Psyllid ID: psy17798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFLT
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHcccEEEEEccccccEEcc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHcccEEEEEcccccccEcc
Coil and Loop (DISEMBL)
mlpyltnaygnphsrthaygweseKAVEDARQEIATLincdpkeiiftsgatesnniAVKGVARFYKEKKKHvittqtehkcvldscrilegegfnvlgsnpgqggnflt
Flexible Loop (DISEMBL)
mlpyltnaygnphsrthayGWESEKAVEDARQEIATLINCDPKEIIftsgatesnniAVKGVARFYKEKKKhvittqtehkcvLDSCRILEgegfnvlgsnpgqggnflt
Low Complexity Region (SEG)
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFLT
Disordered region (IsUnstruct)
*****************AYGWES*KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL************
Disordered Region (DISOPRED)
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL*
Disordered Region (DISEMBL)
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFLT
Disordered Region (DISPRO)
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9VKD3	462	Probable cysteine desulfu	yes	N/A	0.881	0.209	0.845	7e-45
Q99P39	451	Cysteine desulfurase, mit	yes	N/A	0.881	0.215	0.793	1e-44
Q9Y697	457	Cysteine desulfurase, mit	yes	N/A	0.881	0.212	0.804	2e-44
Q5RDE7	457	Cysteine desulfurase, mit	yes	N/A	0.881	0.212	0.804	2e-44
Q9Z1J3	451	Cysteine desulfurase, mit	yes	N/A	0.881	0.215	0.793	2e-44
O74351	501	Probable cysteine desulfu	yes	N/A	0.881	0.193	0.752	6e-41
Q54X04	450	Probable cysteine desulfu	yes	N/A	0.963	0.235	0.679	4e-37
P87185	488	Cysteine desulfurase, mit	N/A	N/A	0.881	0.198	0.711	8e-37
P87187	484	Cysteine desulfurase, mit	N/A	N/A	0.881	0.200	0.701	1e-36
A8GNU0	410	Cysteine desulfurase OS=R	yes	N/A	0.881	0.236	0.670	2e-36

>sp|Q9VKD3|NFS1_DROME Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1

 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYLTN YGNPHSRTHAYGWE+E AVE AR+++ATLI  DPKEIIFTSGATESNNIAVK
Sbjct: 82  MLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVK 141

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY  KK+HVITTQTEHKCVLDSCR LE EGF V
Sbjct: 142 GVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKV 178

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 7

>sp|Q99P39|NFS1_RAT Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 71  MLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 130

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH++TTQTEHKCVLDSCR LE EGF V
Sbjct: 131 GVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRV 167

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9Y697|NFS1_HUMAN Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3

 Score =  177 bits (449), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 77  MLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct: 137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q5RDE7|NFS1_PONAB Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1

 Score =  177 bits (448), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 77  MLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct: 137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9Z1J3|NFS1_MOUSE Cysteine desulfurase, mitochondrial OS=Mus musculus GN=Nfs1 PE=2 SV=2

 Score =  177 bits (448), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 71  MLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 130

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH++TTQTEHKCVLDSCR LE EGF V
Sbjct: 131 GVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRV 167

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|O74351|NFS1_SCHPO Probable cysteine desulfurase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21D10.11c PE=3 SV=2

 Score =  165 bits (418), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 85/97 (87%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLP+ T  YGNPHSRTHAYGWE+EKAVE+ARQEIA++IN DP+EIIFTSGATESNN  +K
Sbjct: 122 MLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINADPREIIFTSGATESNNAILK 181

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFYK +KKH+++ QTEHKCVLDS R L+ EGF V
Sbjct: 182 GVARFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEV 218

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q54X04|NFS1_DICDI Probable cysteine desulfurase, mitochondrial OS=Dictyostelium discoideum GN=nfs1 PE=1 SV=1

 Score =  152 bits (385), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 82/106 (77%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLP  T  YGNPHS+THAYGW S   VEDAR++++ +I  D KEIIFTSGATES NIA+K
Sbjct: 70  MLPLYTENYGNPHSKTHAYGWTSNDLVEDAREKVSKIIGADSKEIIFTSGATESGNIAIK 129

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           GVARFYKEKK H+ITT TEHKC+LDSCR LE EGF V     G+ G
Sbjct: 130 GVARFYKEKKNHIITTVTEHKCILDSCRHLEMEGFKVTYLPVGENG 175

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|P87185|NFS1_CANAL Cysteine desulfurase, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NFS1 PE=3 SV=1

 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           ML + T  YGNPHS THAYGWE++K VE AR  IA +IN DPKEIIFTSGATE+NN+A+K
Sbjct: 107 MLEFYTGLYGNPHSSTHAYGWETDKEVEKARTYIADVINADPKEIIFTSGATETNNMAIK 166

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GV RFYK+ KKH+ITTQTEHKCVLDS R ++ EGF V
Sbjct: 167 GVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFEV 203

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. Involved in both tRNA-processing and mitochondrial metabolism.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|P87187|NFS1_CANMA Cysteine desulfurase, mitochondrial OS=Candida maltosa GN=SPL1 PE=3 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 81/97 (83%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           ML + T  YGNPHS THAYGWE++K VE AR  IA +IN DPKEIIFTSGATE+NN+A+K
Sbjct: 103 MLEFYTGLYGNPHSSTHAYGWETDKEVEKARGYIADVINADPKEIIFTSGATETNNMAIK 162

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GV RFYK+ KKH+ITTQTEHKCVLDS R ++ EGF++
Sbjct: 163 GVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFDI 199

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. Involved in both tRNA-processing and mitochondrial metabolism.

Candida maltosa (taxid: 5479)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|A8GNU0|ISCS_RICAH Cysteine desulfurase OS=Rickettsia akari (strain Hartford) GN=iscS PE=3 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 80/97 (82%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPY T  +GNPHSR+H++GWE+E+AVE+AR  +A LI  D KEIIFTSGATESNN+A+K
Sbjct: 30  MLPYFTTKFGNPHSRSHSFGWEAERAVEEARSRVARLIGADTKEIIFTSGATESNNLAIK 89

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVA+FY  KK H+IT  +EHKCVLD+CR LE EG N+
Sbjct: 90  GVAKFYGNKKNHIITVVSEHKCVLDACRYLEQEGINI 126

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Rickettsia akari (strain Hartford) (taxid: 293614)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
321474166	426	hypothetical protein DAPPUDRAFT_46336 [D	0.881	0.227	0.845	3e-44
395830354	378	PREDICTED: cysteine desulfurase, mitocho	0.881	0.256	0.814	2e-43
195350957	458	GM26695 [Drosophila sechellia] gi|194123	0.881	0.211	0.845	2e-43
284004919	452	cysteine desulfurase, mitochondrial [Ory	0.881	0.214	0.824	2e-43
344279915	457	PREDICTED: cysteine desulfurase, mitocho	0.881	0.212	0.814	3e-43
20129463	462	CG12264 [Drosophila melanogaster] gi|134	0.881	0.209	0.845	3e-43
197215645	455	NFS1 nitrogen fixation 1 homolog (predic	0.881	0.213	0.814	4e-43
189055336	457	unnamed protein product [Homo sapiens]	0.881	0.212	0.804	5e-43
194861456	458	GG23754 [Drosophila erecta] gi|190661653	0.881	0.211	0.845	5e-43
351702537	457	Cysteine desulfurase, mitochondrial [Het	0.881	0.212	0.824	5e-43

>gi|321474166|gb|EFX85132.1| hypothetical protein DAPPUDRAFT_46336 [Daphnia pulex]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 90/97 (92%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPY+TN YGNPHSRTH+YGWESEKAVE AR+++A LIN DPKEIIFTSGATESNNIA+K
Sbjct: 46  MLPYMTNYYGNPHSRTHSYGWESEKAVEVAREQVAKLINADPKEIIFTSGATESNNIAIK 105

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFYK KK H+ITTQTEHKCVLDSCR+LEGEGF V
Sbjct: 106 GVARFYKMKKNHIITTQTEHKCVLDSCRVLEGEGFEV 142

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395830354|ref|XP_003788296.1| PREDICTED: cysteine desulfurase, mitochondrial [Otolemur garnettii]

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/97 (81%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 75  MLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 134

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKHVITTQTEHKCVLDSCR LE EGF V
Sbjct: 135 GVARFYRSRKKHVITTQTEHKCVLDSCRSLEAEGFRV 171

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195350957|ref|XP_002042003.1| GM26695 [Drosophila sechellia] gi|194123827|gb|EDW45870.1| GM26695 [Drosophila sechellia]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 88/97 (90%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYLTN YGNPHSRTHAYGWE+E AVE AR+++ATLI+ DPKEIIFTSGATESNNIAVK
Sbjct: 78  MLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLISADPKEIIFTSGATESNNIAVK 137

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY  KK+HVITTQTEHKCVLDSCR LE EGF V
Sbjct: 138 GVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKV 174

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284004919|ref|NP_001164805.1| cysteine desulfurase, mitochondrial [Oryctolagus cuniculus] gi|217038337|gb|ACJ76630.1| NFS1 nitrogen fixation 1 homolog (predicted) [Oryctolagus cuniculus]

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/97 (82%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE AVE ARQ++A+LI  DP+EIIFTSGATESNNIAVK
Sbjct: 72  MLPYLVNYYGNPHSRTHAYGWESEAAVERARQQVASLIGADPREIIFTSGATESNNIAVK 131

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct: 132 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFKV 168

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344279915|ref|XP_003411731.1| PREDICTED: cysteine desulfurase, mitochondrial-like isoform 1 [Loxodonta africana]

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/97 (81%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 77  MLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFYK +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct: 137 GVARFYKSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|20129463|ref|NP_609533.1| CG12264 [Drosophila melanogaster] gi|13431751|sp|Q9VKD3.1|NFS1_DROME RecName: Full=Probable cysteine desulfurase, mitochondrial; Flags: Precursor gi|7297897|gb|AAF53143.1| CG12264 [Drosophila melanogaster] gi|21064277|gb|AAM29368.1| LD22661p [Drosophila melanogaster] gi|220943882|gb|ACL84484.1| CG12264-PA [synthetic construct] gi|220953760|gb|ACL89423.1| CG12264-PA [synthetic construct]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYLTN YGNPHSRTHAYGWE+E AVE AR+++ATLI  DPKEIIFTSGATESNNIAVK
Sbjct: 82  MLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVK 141

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY  KK+HVITTQTEHKCVLDSCR LE EGF V
Sbjct: 142 GVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKV 178

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197215645|gb|ACH53037.1| NFS1 nitrogen fixation 1 homolog (predicted) [Otolemur garnettii]

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/97 (81%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 75  MLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 134

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKHVITTQTEHKCVLDSCR LE EGF V
Sbjct: 135 GVARFYRSRKKHVITTQTEHKCVLDSCRSLEAEGFRV 171

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189055336|dbj|BAG35220.1| unnamed protein product [Homo sapiens]

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 77  MLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct: 137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194861456|ref|XP_001969786.1| GG23754 [Drosophila erecta] gi|190661653|gb|EDV58845.1| GG23754 [Drosophila erecta]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYLTN YGNPHSRTHAYGWE+E AVE AR+++ATLI  DPKEIIFTSGATESNNIAVK
Sbjct: 78  MLPYLTNFYGNPHSRTHAYGWETETAVEKAREQVATLIGADPKEIIFTSGATESNNIAVK 137

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFY  KK+HVITTQTEHKCVLDSCR LE EGF V
Sbjct: 138 GVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKV 174

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|351702537|gb|EHB05456.1| Cysteine desulfurase, mitochondrial [Heterocephalus glaber]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 87/97 (89%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct: 77  MLPYLINYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GVARFYK +KKHVITTQTEHKCVLDSCR LE EGF V
Sbjct: 137 GVARFYKSRKKHVITTQTEHKCVLDSCRSLEAEGFRV 173

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0032393	462	CG12264 [Drosophila melanogast	0.881	0.209	0.845	1.7e-41
UNIPROTKB|F1PAY2	457	NFS1 "Uncharacterized protein"	0.881	0.212	0.804	2e-40
UNIPROTKB|B6UV57	457	LOC100739236 "Nitrogen fixatio	0.881	0.212	0.804	2e-40
UNIPROTKB|A5PKG4	457	NFS1 "Uncharacterized protein"	0.881	0.212	0.804	3.3e-40
UNIPROTKB|F2Z2E7	204	NFS1 "Cysteine desulfurase, mi	0.881	0.475	0.804	3.3e-40
UNIPROTKB|Q9Y697	457	NFS1 "Cysteine desulfurase, mi	0.881	0.212	0.804	3.3e-40
MGI|MGI:1316706	451	Nfs1 "nitrogen fixation gene 1	0.881	0.215	0.793	3.3e-40
RGD|620912	451	Nfs1 "NFS1 nitrogen fixation 1	0.881	0.215	0.793	3.3e-40
UNIPROTKB|Q3MHT2	459	Nfs1 "Cysteine desulfurase, mi	0.881	0.211	0.793	3.3e-40
UNIPROTKB|F1NNU3	438	LOC100858210 "Uncharacterized	0.881	0.221	0.783	8.7e-40

FB|FBgn0032393 CG12264 [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 82/97 (84%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYLTN YGNPHSRTHAYGWE+E AVE AR+++ATLI  DPKEIIFTSGATESNNIAVK
Sbjct:    82 MLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVK 141

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY  KK+HVITTQTEHKCVLDSCR LE EGF V
Sbjct:   142 GVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKV 178

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS;NAS

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006523 "alanine biosynthetic process" evidence=ISS

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1PAY2 NFS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    77 MLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct:   137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|B6UV57 LOC100739236 "Nitrogen fixation 1-like protein" [Sus scrofa (taxid:9823)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    77 MLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct:   137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|A5PKG4 NFS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    77 MLPYLVNYYGNPHSRTHAYGWESEAAMECARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct:   137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFKV 173

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|F2Z2E7 NFS1 "Cysteine desulfurase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    17 MLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 76

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct:    77 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 113

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q9Y697 NFS1 "Cysteine desulfurase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    77 MLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 136

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH+ITTQTEHKCVLDSCR LE EGF V
Sbjct:   137 GVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQV 173

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0031071 "cysteine desulfurase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0032324 "molybdopterin cofactor biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1316706 Nfs1 "nitrogen fixation gene 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    71 MLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 130

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH++TTQTEHKCVLDSCR LE EGF V
Sbjct:   131 GVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRV 167

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=ISO;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

RGD|620912 Nfs1 "NFS1 nitrogen fixation 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    71 MLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 130

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH++TTQTEHKCVLDSCR LE EGF V
Sbjct:   131 GVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRV 167

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

UNIPROTKB|Q3MHT2 Nfs1 "Cysteine desulfurase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYL N YGNPHSRTHAYGWESE A+E ARQ++A+LI  DP+EIIFTSGATESNNIA+K
Sbjct:    79 MLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIK 138

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFY+ +KKH++TTQTEHKCVLDSCR LE EGF V
Sbjct:   139 GVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRV 175

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

UNIPROTKB|F1NNU3 LOC100858210 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 76/97 (78%), Positives = 85/97 (87%)

Query:     1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
             MLPYLT  YGNPHSRTHAYGWESE A E AR+++A LI  DP+EIIFTSGATESNN+A+K
Sbjct:    58 MLPYLTGCYGNPHSRTHAYGWESEAATERARRQVADLIGADPREIIFTSGATESNNMAIK 117

Query:    61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
             GVARFYK +KKH+ITTQTEHKCVLDSCR LE EGF +
Sbjct:   118 GVARFYKSRKKHIITTQTEHKCVLDSCRSLEAEGFQI 154

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y697	NFS1_HUMAN	2, ., 8, ., 1, ., 7	0.8041	0.8818	0.2122	yes	N/A
Q9Z1J3	NFS1_MOUSE	2, ., 8, ., 1, ., 7	0.7938	0.8818	0.2150	yes	N/A
Q99P39	NFS1_RAT	2, ., 8, ., 1, ., 7	0.7938	0.8818	0.2150	yes	N/A
Q02RW8	ISCS_PSEAB	2, ., 8, ., 1, ., 7	0.5918	0.8909	0.2425	yes	N/A
Q60C64	ISCS_METCA	2, ., 8, ., 1, ., 7	0.5566	0.9636	0.2630	yes	N/A
Q4UL77	ISCS_RICFE	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
A6V0U8	ISCS_PSEA7	2, ., 8, ., 1, ., 7	0.5918	0.8909	0.2425	yes	N/A
Q5F8X4	ISCS_NEIG1	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2400	yes	N/A
A1KUK1	ISCS_NEIMF	2, ., 8, ., 1, ., 7	0.6597	0.8818	0.2400	yes	N/A
O74351	NFS1_SCHPO	2, ., 8, ., 1, ., 7	0.7525	0.8818	0.1936	yes	N/A
A3QFD5	ISCS_SHELP	2, ., 8, ., 1, ., 7	0.5833	0.9636	0.2623	yes	N/A
A9M029	ISCS_NEIM0	2, ., 8, ., 1, ., 7	0.6597	0.8818	0.2400	yes	N/A
C3PNQ8	ISCS_RICAE	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
O60028	NFS1_ASHGO	2, ., 8, ., 1, ., 7	0.6132	0.9636	0.2163	yes	N/A
A4VNY2	ISCS_PSEU5	2, ., 8, ., 1, ., 7	0.5740	0.9636	0.2623	yes	N/A
O49543	NFS1_ARATH	2, ., 8, ., 1, ., 7	0.7415	0.8090	0.1964	yes	N/A
P25374	NFS1_YEAST	2, ., 8, ., 1, ., 7	0.6597	0.8818	0.1951	yes	N/A
Q5RDE7	NFS1_PONAB	2, ., 8, ., 1, ., 7	0.8041	0.8818	0.2122	yes	N/A
Q92HP1	ISCS_RICCN	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
A7MU48	ISCS_VIBHB	2, ., 8, ., 1, ., 7	0.5925	0.9636	0.2623	yes	N/A
A8F204	ISCS_RICM5	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
Q2GGJ4	ISCS_EHRCR	2, ., 8, ., 1, ., 7	0.6494	0.8727	0.2341	yes	N/A
Q9HXI8	ISCS_PSEAE	2, ., 8, ., 1, ., 7	0.5918	0.8909	0.2425	yes	N/A
Q9ZD60	ISCS_RICPR	2, ., 8, ., 1, ., 7	0.6288	0.8818	0.2365	yes	N/A
B4RMB8	ISCS_NEIG2	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2400	yes	N/A
Q1RHY6	ISCS_RICBR	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
Q9VKD3	NFS1_DROME	2, ., 8, ., 1, ., 7	0.8453	0.8818	0.2099	yes	N/A
Q8DEY7	ISCS_VIBVU	2, ., 8, ., 1, ., 7	0.5740	0.9636	0.2623	yes	N/A
A8GNU0	ISCS_RICAH	2, ., 8, ., 1, ., 7	0.6701	0.8818	0.2365	yes	N/A
Q68WP6	ISCS_RICTY	2, ., 8, ., 1, ., 7	0.6391	0.8818	0.2365	yes	N/A
C4K1Z7	ISCS_RICPU	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
Q9JYY0	ISCS_NEIMB	2, ., 8, ., 1, ., 7	0.6288	0.8818	0.2400	yes	N/A
A8GSG4	ISCS_RICRS	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
Q9JTX0	ISCS_NEIMA	2, ., 8, ., 1, ., 7	0.6597	0.8818	0.2400	yes	N/A
Q54X04	NFS1_DICDI	2, ., 8, ., 1, ., 7	0.6792	0.9636	0.2355	yes	N/A
B0BXX6	ISCS_RICRO	2, ., 8, ., 1, ., 7	0.6494	0.8818	0.2365	yes	N/A
A8GWB2	ISCS_RICB8	2, ., 8, ., 1, ., 7	0.6597	0.8818	0.2365	yes	N/A
B7UWH7	ISCS_PSEA8	2, ., 8, ., 1, ., 7	0.5918	0.8909	0.2425	yes	N/A
Q8SQS2	NFS1_ENCCU	2, ., 8, ., 1, ., 7	0.6666	0.8818	0.2245	yes	N/A
Q9KTY2	ISCS_VIBCH	2, ., 8, ., 1, ., 7	0.5648	0.9636	0.2623	yes	N/A
Q486Z0	ISCS_COLP3	2, ., 8, ., 1, ., 7	0.5833	0.9636	0.2623	yes	N/A
Q87S28	ISCS_VIBPA	2, ., 8, ., 1, ., 7	0.5833	0.9636	0.2623	yes	N/A
C3LT01	ISCS_VIBCM	2, ., 8, ., 1, ., 7	0.5648	0.9636	0.2623	yes	N/A
Q8EEU9	ISCS_SHEON	2, ., 8, ., 1, ., 7	0.5925	0.9636	0.2623	yes	N/A
A5F3G4	ISCS_VIBC3	2, ., 8, ., 1, ., 7	0.5648	0.9636	0.2623	yes	N/A
Q7MNG2	ISCS_VIBVY	2, ., 8, ., 1, ., 7	0.5740	0.9636	0.2623	yes	N/A
A1S544	ISCS_SHEAM	2, ., 8, ., 1, ., 7	0.5925	0.9636	0.2623	yes	N/A
A8EYH9	ISCS_RICCK	2, ., 8, ., 1, ., 7	0.6346	0.9272	0.2487	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
PLN02651	364	PLN02651, PLN02651, cysteine desulfurase	2e-59
PRK14012	404	PRK14012, PRK14012, cysteine desulfurase; Provisio	2e-58
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	1e-53
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	6e-48
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	1e-39
TIGR03402	379	TIGR03402, FeS_nifS, cysteine desulfurase NifS	1e-36
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-22
TIGR03403	382	TIGR03403, nifS_epsilon, cysteine desulfurase, Nif	8e-19
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	2e-16
PRK02948	381	PRK02948, PRK02948, cysteine desulfurase; Provisio	1e-15
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	1e-15
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	1e-12
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	1e-11
TIGR03392	398	TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat	1e-08
PRK10874	401	PRK10874, PRK10874, cysteine sulfinate desulfinase	5e-08
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	3e-06
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	3e-06
PRK09295	406	PRK09295, PRK09295, bifunctional cysteine desulfur	6e-04
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	0.001

>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase

 Score =  185 bits (472), Expect = 2e-59
 Identities = 74/97 (76%), Positives = 82/97 (84%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLP+L   +GNPHSRTH YGWESE AVE AR ++A LI  DPKEIIFTSGATESNN+A+K
Sbjct: 19  MLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIK 78

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           GV  FYK+KKKHVITTQTEHKCVLDSCR L+ EGF V
Sbjct: 79  GVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEV 115

Length = 364

>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional

 Score =  184 bits (469), Expect = 2e-58
 Identities = 63/108 (58%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 1   MLPYLTNA--YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
           M+PYLT    +GNP SR+H +GW++E+AV+ AR +IA LI  DP+EI+FTSGATES+N+A
Sbjct: 23  MMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLA 82

Query: 59  VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           +KG A FY++K KH+IT++TEHK VLD+CR LE EGF V   +P   G
Sbjct: 83  IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNG 130

Length = 404

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score =  171 bits (435), Expect = 1e-53
 Identities = 64/106 (60%), Positives = 83/106 (78%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M+PYLT  +GNP SR+H++GWE+E+AVE+AR ++A LI  D +EI+FTSGATESNN+A+K
Sbjct: 23  MMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIK 82

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           G+A FYK K  H+IT++TEHK VLD+CR LE EGF V    P   G
Sbjct: 83  GIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNG 128

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score =  156 bits (397), Expect = 6e-48
 Identities = 58/99 (58%), Positives = 75/99 (75%), Gaps = 3/99 (3%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPYLT  +GNP S  H++G E+ KAVE+AR++IA L+  DP+EIIFTSGATESNN+A+K
Sbjct: 21  MLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIK 79

Query: 61  GVARFY--KEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           G A  Y   +K KH+IT+  EH  VL++CR LE +GF V
Sbjct: 80  GAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEV 118

Length = 386

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score =  134 bits (339), Expect = 1e-39
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLP+L   +GNP SRTH +G  ++KAVE AR+++A  +  D +E+IFTSGATESNN+A+ 
Sbjct: 18  MLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAIL 77

Query: 61  GVARFYKEK-KKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           G+AR  ++K KKH+IT+  EH  VL+  R LE  GF V      + G
Sbjct: 78  GLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESG 124

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS

 Score =  126 bits (320), Expect = 1e-36
 Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 2/97 (2%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPY T  +GNP S  H++G E  KAVE+AR+++A L+  +P EIIFTSG TES+N A+K
Sbjct: 19  MLPYFTEYFGNP-SSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIK 77

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
                  E K+H+ITT  EH  VL  C+ LE +G+ V
Sbjct: 78  SALAAQPE-KRHIITTAVEHPAVLSLCQHLEKQGYKV 113

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 89.6 bits (223), Expect = 1e-22
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAV 59
           +  Y T+  GN H   H  G E+ +A E+AR+++A  IN    +EIIFTSG TE+ N+  
Sbjct: 19  LQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIFTSGTTEAINLVA 78

Query: 60  KGVARFYKEKKKHVITTQTEHKCVLDSCRILE 91
             + R  K     ++ T+ EH   L   + L 
Sbjct: 79  ISLGRSLK-PGDEILVTEMEHHANLVPWQELA 109

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type

 Score = 79.1 bits (195), Expect = 8e-19
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAV 59
           M P+  + YGNP+S  H +G  +  A+ +A  ++   IN  D  +II TS ATESNN  +
Sbjct: 19  MDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVL 77

Query: 60  KGVARFY--KEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           KGV      K  K H+ITT+ EH  V  +C  LE  G  V
Sbjct: 78  KGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEV 117

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 4  YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
          Y  +   N H   H     +  A E AR+++A  IN   P EIIFT   TE+ N+   G+
Sbjct: 22 YYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGL 81

Query: 63 ARFYKEKKKHVITTQTEH 80
           R  K     ++T+  EH
Sbjct: 82 GRANKP-GDEIVTSVMEH 98

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 9   YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE 68
           +GN  S  H  G  +   ++  R+  A +I  + + I FTSG TESN +A++ +     +
Sbjct: 28  FGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQ 86

Query: 69  KKKHVITTQTEHKCVLDSCRILEGEGFNV 97
            KKH+ITT  EH  +    + LE +G+ V
Sbjct: 87  NKKHIITTPMEHASIHSYFQSLESQGYTV 115

Length = 381

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGV 62
           Y      N H   H    E+    E AR+ +A  +N D   EI+FT G TE+ N+  +G+
Sbjct: 45  YYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGL 104

Query: 63  ARFYKEKKKHVITTQTEH 80
            R   +    ++ +  EH
Sbjct: 105 GR-SLKPGDEIVVSDLEH 121

Length = 405

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAV 59
           M  +  N  G+P    +     + + VE+ RQ +A L N      ++FT+ AT + NIA+
Sbjct: 20  MADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIAL 79

Query: 60  KGVARFYKEKKKHVITTQTEHKCVLDSCRILE 91
           KG+    KE   HVITT  EH  V    R LE
Sbjct: 80  KGL---LKE-GDHVITTPMEHNSVA---RPLE 104

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
           Y  N+  N H   H     + +A E  R+++A  IN    +EI+FT G TES N+     
Sbjct: 41  YYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSW 100

Query: 63  ARFYKEKKKHVITTQTEH 80
                +    ++ ++ EH
Sbjct: 101 GDSNLKAGDEIVISEMEH 118

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
           +   + G  H   H          E ARQ++A  +N  D + I++T G TES N+  +  
Sbjct: 39  FYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSY 98

Query: 63  ARFYKEKKKHVITTQTEH 80
           AR   +    +I ++ EH
Sbjct: 99  ARPRLQPGDEIIVSEAEH 116

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398

>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
           + + + GN H    A         E AR+++A L+N  D K I++T G TES N+  +  
Sbjct: 42  FYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSY 101

Query: 63  ARFYKEKKKHVITTQTEH 80
           AR   +    +I ++ EH
Sbjct: 102 ARPRLQPGDEIIVSEAEH 119

Length = 401

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGAT 52
           + +N YGNPHS++ +    S   +E ARQ++    N  P +   +FTSGAT
Sbjct: 58  FSSNVYGNPHSQSDS-SMRSSDTIESARQQVLEYFNAPPSDYACVFTSGAT 107

Length = 805

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 11  NPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEK 69
           N H   HA   ++  A E AR+++A  IN    +EI+FT  ATE+ N+          + 
Sbjct: 62  NVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKP 121

Query: 70  KKHVITTQTEH 80
              VI +  EH
Sbjct: 122 GDEVILSVAEH 132

Length = 424

>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 9   YGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYK 67
           Y   H   H    ++ + +E+ R++ A  IN    +E++F  G TE  N+          
Sbjct: 51  YAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNV 110

Query: 68  EKKKHVITTQTEH 80
               ++I ++ EH
Sbjct: 111 RAGDNIIISEMEH 123

Length = 406

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 31  RQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84
           R+ IA        I+C+P++I+ TSGA ++ ++    + R   +    V+    E     
Sbjct: 138 REAIAAYLLARRGISCEPEQIVITSGAQQALDL----LLRLLLDPGDTVL---VEDPTYP 190

Query: 85  DSCRILEGEGFNVLG 99
            + + LE  G  V+ 
Sbjct: 191 GALQALEALGARVIP 205

Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.93
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.9
KOG1549|consensus	428		99.89
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.78
PLN02651	364	cysteine desulfurase	99.77
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.77
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.75
PRK02948	381	cysteine desulfurase; Provisional	99.74
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.74
PLN02724	805	Molybdenum cofactor sulfurase	99.74
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.73
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.72
PRK14012	404	cysteine desulfurase; Provisional	99.72
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.72
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.71
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.71
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.71
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.66
PLN03032	374	serine decarboxylase; Provisional	99.65
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.5
PRK02769	380	histidine decarboxylase; Provisional	99.5
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.5
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.41
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.4
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.35
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.3
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.29
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.27
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.26
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.24
PRK09105	370	putative aminotransferase; Provisional	99.23
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.22
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.21
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.19
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.17
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.17
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.14
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.13
PRK08960	387	hypothetical protein; Provisional	99.13
PRK07908	349	hypothetical protein; Provisional	99.11
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.1
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.09
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.08
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.08
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.07
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.07
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.07
PRK03321	352	putative aminotransferase; Provisional	99.06
PRK07681	399	aspartate aminotransferase; Provisional	99.05
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.05
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.05
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.04
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.04
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.03
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.03
PRK06225	380	aspartate aminotransferase; Provisional	99.02
PRK07324	373	transaminase; Validated	99.01
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.01
PRK06836	394	aspartate aminotransferase; Provisional	99.01
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.0
PRK09265	404	aminotransferase AlaT; Validated	99.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.0
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	98.99
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	98.99
PRK05957	389	aspartate aminotransferase; Provisional	98.98
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	98.98
PRK07337	388	aminotransferase; Validated	98.98
PRK08361	391	aspartate aminotransferase; Provisional	98.98
PLN02187	462	rooty/superroot1	98.97
PTZ00377	481	alanine aminotransferase; Provisional	98.97
PTZ00433	412	tyrosine aminotransferase; Provisional	98.97
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.96
PRK09148	405	aminotransferase; Validated	98.96
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	98.95
PLN02409	401	serine--glyoxylate aminotransaminase	98.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	98.93
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	98.93
PRK07683	387	aminotransferase A; Validated	98.93
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	98.92
PRK05942	394	aspartate aminotransferase; Provisional	98.92
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	98.91
PRK06108	382	aspartate aminotransferase; Provisional	98.91
PLN02656	409	tyrosine transaminase	98.91
PRK08912	387	hypothetical protein; Provisional	98.91
PRK06290	410	aspartate aminotransferase; Provisional	98.9
PRK07568	397	aspartate aminotransferase; Provisional	98.9
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	98.89
PRK08363	398	alanine aminotransferase; Validated	98.88
PLN00175	413	aminotransferase family protein; Provisional	98.88
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	98.88
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	98.88
PRK07550	386	hypothetical protein; Provisional	98.88
PRK08175	395	aminotransferase; Validated	98.87
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	98.87
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	98.87
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	98.86
PRK06348	384	aspartate aminotransferase; Provisional	98.86
PRK08636	403	aspartate aminotransferase; Provisional	98.85
PRK05764	393	aspartate aminotransferase; Provisional	98.85
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.84
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	98.84
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	98.84
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	98.83
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.83
PRK06207	405	aspartate aminotransferase; Provisional	98.82
PRK08068	389	transaminase; Reviewed	98.82
PLN02368	407	alanine transaminase	98.82
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.81
PRK08637	388	hypothetical protein; Provisional	98.81
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	98.8
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	98.8
PRK08056	356	threonine-phosphate decarboxylase; Provisional	98.8
PRK06358	354	threonine-phosphate decarboxylase; Provisional	98.79
PLN02231	534	alanine transaminase	98.79
PRK06425	332	histidinol-phosphate aminotransferase; Validated	98.79
PRK07682	378	hypothetical protein; Validated	98.78
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	98.78
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	98.78
PRK05839	374	hypothetical protein; Provisional	98.77
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.77
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.76
PRK03080	378	phosphoserine aminotransferase; Provisional	98.75
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.75
cd00609	350	AAT_like Aspartate aminotransferase family. This f	98.75
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	98.74
PRK07309	391	aromatic amino acid aminotransferase; Validated	98.74
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	98.74
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	98.74
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	98.73
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	98.73
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.72
PRK09257	396	aromatic amino acid aminotransferase; Provisional	98.72
PRK12414	384	putative aminotransferase; Provisional	98.72
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.71
PRK06460	376	hypothetical protein; Provisional	98.71
PRK06855	433	aminotransferase; Validated	98.7
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.7
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.69
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	98.69
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.68
PRK07050	394	cystathionine beta-lyase; Provisional	98.68
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.64
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	98.64
PRK07777	387	aminotransferase; Validated	98.63
PRK05367	954	glycine dehydrogenase; Provisional	98.62
PRK09082	386	methionine aminotransferase; Validated	98.61
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.6
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.58
PLN02721	353	threonine aldolase	98.58
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	98.57
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	98.55
PRK06107	402	aspartate aminotransferase; Provisional	98.53
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	98.53
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.52
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	98.51
KOG0259|consensus	447		98.51
PRK08861	388	cystathionine gamma-synthase; Provisional	98.5
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	98.5
PRK08249	398	cystathionine gamma-synthase; Provisional	98.49
PLN02263	470	serine decarboxylase	98.49
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.49
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.48
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	98.48
PRK09028	394	cystathionine beta-lyase; Provisional	98.47
PRK08574	385	cystathionine gamma-synthase; Provisional	98.46
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	98.46
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.46
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	98.45
PRK07582	366	cystathionine gamma-lyase; Validated	98.43
PRK08064	390	cystathionine beta-lyase; Provisional	98.43
PTZ00376	404	aspartate aminotransferase; Provisional	98.43
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	98.42
PRK07503	403	methionine gamma-lyase; Provisional	98.42
PRK08045	386	cystathionine gamma-synthase; Provisional	98.41
PRK07179	407	hypothetical protein; Provisional	98.39
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	98.39
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	98.39
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	98.37
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	98.36
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	98.35
PRK05939	397	hypothetical protein; Provisional	98.34
PRK06234	400	methionine gamma-lyase; Provisional	98.34
PRK08776	405	cystathionine gamma-synthase; Provisional	98.33
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	98.32
PLN02483	489	serine palmitoyltransferase	98.31
PRK08354	311	putative aminotransferase; Provisional	98.3
PLN02672	1082	methionine S-methyltransferase	98.29
PRK05968	389	hypothetical protein; Provisional	98.28
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	98.27
KOG0634|consensus	472		98.27
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	98.26
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.26
PRK07811	388	cystathionine gamma-synthase; Provisional	98.26
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.23
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	98.21
KOG0257|consensus	420		98.2
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	98.2
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	98.19
PRK08247	366	cystathionine gamma-synthase; Reviewed	98.17
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.15
PRK05967	395	cystathionine beta-lyase; Provisional	98.13
PLN02242	418	methionine gamma-lyase	98.13
PRK06767	386	methionine gamma-lyase; Provisional	98.1
PRK06434	384	cystathionine gamma-lyase; Validated	98.1
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	98.1
KOG0256|consensus	471		98.1
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	98.08
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	98.08
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	98.07
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.07
PRK09275	527	aspartate aminotransferase; Provisional	98.05
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.03
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	98.02
PRK04311	464	selenocysteine synthase; Provisional	98.01
PRK07671	377	cystathionine beta-lyase; Provisional	98.0
PRK07049	427	methionine gamma-lyase; Validated	97.98
PRK10534	333	L-threonine aldolase; Provisional	97.97
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	97.96
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	97.95
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	97.94
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	97.93
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	97.92
PRK08114	395	cystathionine beta-lyase; Provisional	97.9
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	97.9
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	97.87
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	97.77
PRK13393	406	5-aminolevulinate synthase; Provisional	97.73
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	97.72
PRK05367	954	glycine dehydrogenase; Provisional	97.69
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.67
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	97.65
PRK13392	410	5-aminolevulinate synthase; Provisional	97.63
PLN02822	481	serine palmitoyltransferase	97.63
PLN02509	464	cystathionine beta-lyase	97.62
KOG0258|consensus	475		97.62
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	97.59
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	97.55
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	97.54
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	97.48
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.42
PRK13578	720	ornithine decarboxylase; Provisional	97.4
PLN02271	586	serine hydroxymethyltransferase	97.36
PRK15029	755	arginine decarboxylase; Provisional	97.35
PRK07269	364	cystathionine gamma-synthase; Reviewed	97.33
PLN02880	490	tyrosine decarboxylase	97.32
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.29
PLN02590	539	probable tyrosine decarboxylase	97.29
PRK15400	714	lysine decarboxylase CadA; Provisional	97.28
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	97.27
PLN02397	423	aspartate transaminase	97.24
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	97.23
PRK13034	416	serine hydroxymethyltransferase; Reviewed	97.1
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	97.08
PRK12566	954	glycine dehydrogenase; Provisional	97.02
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	96.93
KOG2862|consensus	385		96.92
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	96.87
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	96.87
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	96.84
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	96.79
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	96.62
PRK09064	407	5-aminolevulinate synthase; Validated	96.54
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	96.47
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	96.47
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	96.42
PLN03226	475	serine hydroxymethyltransferase; Provisional	96.19
PRK07505	402	hypothetical protein; Provisional	96.16
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	96.04
KOG0633|consensus	375		95.92
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	95.67
PLN02452	365	phosphoserine transaminase	95.38
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	95.2
PRK03244	398	argD acetylornithine aminotransferase; Provisional	94.98
PRK01278	389	argD acetylornithine transaminase protein; Provisi	94.82
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	94.77
PRK12462	364	phosphoserine aminotransferase; Provisional	94.75
KOG0053|consensus	409		94.34
KOG1368|consensus	384		94.16
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	93.78
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	93.76
PLN02955	476	8-amino-7-oxononanoate synthase	93.74
PRK02627	396	acetylornithine aminotransferase; Provisional	93.63
PRK13237	460	tyrosine phenol-lyase; Provisional	92.9
COG1184	301	GCD2 Translation initiation factor 2B subunit, eIF	92.39
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	91.42
PRK04260	375	acetylornithine aminotransferase; Provisional	90.43
COG3844	407	Kynureninase [Amino acid transport and metabolism]	90.24
KOG2142|consensus	728		89.94
COG4100	416	Cystathionine beta-lyase family protein involved i	89.82
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	89.49
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	89.35
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	88.89
PRK02936	377	argD acetylornithine aminotransferase; Provisional	87.88
KOG1383|consensus	491		87.87
PRK13580	493	serine hydroxymethyltransferase; Provisional	87.58
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	87.4
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	87.14
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	86.71
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	86.6
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	83.59
PRK10494	259	hypothetical protein; Provisional	83.55
PTZ00125	400	ornithine aminotransferase-like protein; Provision	83.04
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	83.03
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	82.85
KOG1403|consensus	452		81.4
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	80.97
PRK07523	255	gluconate 5-dehydrogenase; Provisional	80.33
PRK12403	460	putative aminotransferase; Provisional	80.07

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.93  E-value=1e-25  Score=162.12  Aligned_cols=108  Identities=55%  Similarity=0.868  Sum_probs=98.6

Q ss_pred             ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc--cCCCEEEEcCC
Q psy17798          1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK--EKKKHVITTQT   78 (110)
Q Consensus         1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~--~~g~~vl~~~~   78 (110)
                      |.+|++..|+||++ .|.+|+.+.+.++++|+.||+++|++|++|+||+|+||++|+++.+......  ++|.+||++.+
T Consensus        21 m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~i   99 (386)
T COG1104          21 MLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAI   99 (386)
T ss_pred             HHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEccc
Confidence            46788889999998 9999999999999999999999999999999999999999999999543221  36889999999


Q ss_pred             CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      |||+++.+.+.+++.|++|+++|+|++|.++
T Consensus       100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~  130 (386)
T COG1104         100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVD  130 (386)
T ss_pred             ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEc
Confidence            9999999999998889999999999999986

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.9e-23  Score=151.88  Aligned_cols=107  Identities=25%  Similarity=0.361  Sum_probs=98.0

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      ..|++..++|++++.|..+..+++.++++|+.+|+++|+++ ++|+||+|+|+++|+++.++... +++||+||+++.||
T Consensus        43 ~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~-~~~gdeIv~s~~EH  121 (405)
T COG0520          43 AEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEH  121 (405)
T ss_pred             HHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhh-hcCCCEEEEccCcc
Confidence            46788899999999999999999999999999999999985 99999999999999999999632 37899999999999


Q ss_pred             hhHHHHHHHHH-hCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRILE-GEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l~-~~g~~v~~v~~~~~G~~~  109 (110)
                      ||+..+|..+. +.|++++++|++++|.++
T Consensus       122 ~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~  151 (405)
T COG0520         122 HSNIVPWQELAKRTGAKVRVIPLDDDGLLD  151 (405)
T ss_pred             hhhHHHHHHHHHhcCcEEEEEecCCCCCcC
Confidence            99999999995 569999999999888875

>KOG1549|consensus

Probab=99.89  E-value=1.2e-22  Score=147.15  Aligned_cols=107  Identities=60%  Similarity=0.980  Sum_probs=94.8

Q ss_pred             ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-CCCEEEEcCCC
Q psy17798          1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-KKKHVITTQTE   79 (110)
Q Consensus         1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-~g~~vl~~~~e   79 (110)
                      |.+|+...++|||+.  ..++++...++++|+.+|+++|++|++|+||+||||++|++++++.|.+.+ ...+||+...|
T Consensus        63 m~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~e  140 (428)
T KOG1549|consen   63 MLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTE  140 (428)
T ss_pred             HHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEeccc
Confidence            467999999999984  456788889999999999999999989999999999999999999974432 12299999999


Q ss_pred             ChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         80 HKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        80 ~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ||++..+|..+++.|++|+.+|++.+|.+|
T Consensus       141 H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d  170 (428)
T KOG1549|consen  141 HPCVLDSCRALQEEGLEVTYLPVEDSGLVD  170 (428)
T ss_pred             CcchhHHHHHHHhcCeEEEEeccCcccccc
Confidence            999999999999999999999999888765

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.78  E-value=4e-18  Score=124.40  Aligned_cols=108  Identities=19%  Similarity=0.324  Sum_probs=93.3

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+|++..++||+++.|..+....+.++++|+.+|+++++ ++++|+||+|+|+++++++.++....+++||+|++++.||
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~  123 (406)
T PRK09295         44 AEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEH  123 (406)
T ss_pred             HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchh
Confidence            457777778998778888888899999999999999998 6899999999999999999987432347899999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|..+ +..|++++.+|++++|.+|
T Consensus       124 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d  153 (406)
T PRK09295        124 HANIVPWQMLCARVGAELRVIPLNPDGTLQ  153 (406)
T ss_pred             hHHHHHHHHHHHHcCcEEEEEecCCCCCCC
Confidence            9999888877 5689999999998877654

>PLN02651 cysteine desulfurase

Probab=99.77  E-value=9.5e-18  Score=120.93  Aligned_cols=108  Identities=69%  Similarity=1.055  Sum_probs=92.8

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+|+...++||+++.|..++...+.++++|+.+++++|+++++|+||+|+|+++++++.++...+.++|++|+++..|||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~   99 (364)
T PLN02651         20 LPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHK   99 (364)
T ss_pred             HHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccH
Confidence            35666778999975677778888899999999999999999999999999999999988774323368999999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++...|..++..|++++.+|++++|.+|
T Consensus       100 s~~~~~~~~~~~g~~v~~v~~~~~~~~d  127 (364)
T PLN02651        100 CVLDSCRHLQQEGFEVTYLPVKSDGLVD  127 (364)
T ss_pred             HHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence            9999998887789999999998777654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.77  E-value=8.2e-18  Score=122.44  Aligned_cols=108  Identities=26%  Similarity=0.320  Sum_probs=93.6

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+|+++.++||+++.|..+....+.++++|+.+|+++|+ ++++|+||+|+|++++++++++....+++||+||+++.+|
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~  119 (401)
T PRK10874         40 QQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEH  119 (401)
T ss_pred             HHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcch
Confidence            467777789998878888888999999999999999999 7899999999999999999998421137899999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|..+ +..|++++.+|++.+|.+|
T Consensus       120 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d  149 (401)
T PRK10874        120 HANLVPWLMVAQQTGAKVVKLPLGADRLPD  149 (401)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEecCCCCcCC
Confidence            9998888877 6789999999998777554

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.75  E-value=3.6e-17  Score=119.00  Aligned_cols=108  Identities=24%  Similarity=0.282  Sum_probs=91.4

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+|+....+||+++.|..+....+.++++|+.+|+++|+ ++++|+||+|+|+++++++.++....+++||+||+++.+|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~  116 (398)
T TIGR03392        37 QQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEH  116 (398)
T ss_pred             HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcch
Confidence            356666778998767888888889999999999999999 4899999999999999999998421127899999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++...|..+ +..|++++.+|++++|.+|
T Consensus       117 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~  146 (398)
T TIGR03392       117 HANLIPWLMVAQQTGAKVVKLPIGADLLPD  146 (398)
T ss_pred             hHHHHHHHHHHHHcCcEEEEEecCCCCCcC
Confidence            9988888766 6789999999998776543

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.74  E-value=5.9e-17  Score=117.18  Aligned_cols=107  Identities=29%  Similarity=0.421  Sum_probs=93.0

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+|++..++||++ .|..+......++++|+.+|+++|+++++|+||+|+|++++.++.++...+.++|++|+++..|||
T Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~   99 (381)
T PRK02948         21 QKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHA   99 (381)
T ss_pred             HHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccH
Confidence            4577777899986 788888888999999999999999999999999999999999988875322257899999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++...+..++..|++++.+|++++|.+|
T Consensus       100 s~~~~~~~~~~~g~~v~~v~~~~~~~~d  127 (381)
T PRK02948        100 SIHSYFQSLESQGYTVTEIPVDKSGLIR  127 (381)
T ss_pred             HHHHHHHHHHhCCCEEEEEeeCCCCCCC
Confidence            9999998888889999999998877654

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.74  E-value=5.5e-17  Score=118.40  Aligned_cols=108  Identities=58%  Similarity=1.003  Sum_probs=91.8

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+|+...++||+++.+..++...+.++++|+.+++++|+++++|+||+|+|+++++++.++...+.++|++|+++..+|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~  103 (402)
T TIGR02006        24 MPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHK  103 (402)
T ss_pred             HHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccH
Confidence            35666678999865677777777889999999999999999999999999999999988875322368899999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++..+|..++..|++++.+|++++|.+|
T Consensus       104 s~~~~~~~~~~~g~~v~~v~~~~~~~~d  131 (402)
T TIGR02006       104 AVLDTCRYLEREGFEVTYLPPKSNGLID  131 (402)
T ss_pred             HHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence            9999998877789999999998877654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.74  E-value=1.9e-17  Score=129.87  Aligned_cols=97  Identities=27%  Similarity=0.400  Sum_probs=85.6

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      +|+.+.++||++ .|..+..+.+.++++|+.+|+++|++++  +|+||+|+|+|+|+++.++.+   ++||+||++..||
T Consensus        57 ~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~---~~gd~Iv~t~~eH  132 (805)
T PLN02724         57 DFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW---SSESHFCYTLENH  132 (805)
T ss_pred             HHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCC---CCCCeEEEeeccc
Confidence            466678899996 7888888999999999999999999765  589999999999999999863   7899999999999


Q ss_pred             hhHHHHHHHHHhCCcEEEEecCC
Q psy17798         81 KCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        81 ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +++..+|...++.|++++++|++
T Consensus       133 ~svl~~~~~a~~~G~~v~~v~~~  155 (805)
T PLN02724        133 NSVLGIREYALEKGAAAIAVDIE  155 (805)
T ss_pred             cchHHHHHHHHHcCCeEEeccch
Confidence            99987665557789999999987

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.73  E-value=1.3e-16  Score=115.31  Aligned_cols=106  Identities=45%  Similarity=0.738  Sum_probs=90.7

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+|+.+.++||++ .+..+....+.++++|+.+++++|+++++|+||+|+|+++++++.++... ..++++|+++..|||
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-~~~~~~vv~~~~~~~   97 (379)
T TIGR03402        20 LPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-QPEKRHIITTAVEHP   97 (379)
T ss_pred             HHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-cCCCCeEEEcccccH
Confidence            3566667799996 77777788889999999999999999999999999999999999886421 145789999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++..+|..++..|++++.+|++++|.+|
T Consensus        98 s~~~~~~~~~~~G~~v~~v~~~~~g~~~  125 (379)
T TIGR03402        98 AVLSLCQHLEKQGYKVTYLPVDEEGRLD  125 (379)
T ss_pred             HHHHHHHHHHHcCCEEEEEccCCCCcCC
Confidence            9999998887789999999998877654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.72  E-value=1.8e-16  Score=116.32  Aligned_cols=108  Identities=23%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+|+++..+||+++.|..+....+.++++|+.+|++++++ +++|+||+|+|++++++++++....+++|++|+++..||
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~  132 (424)
T PLN02855         53 QDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEH  132 (424)
T ss_pred             HHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCcc
Confidence            3566677789887677777777788999999999999995 689999999999999999876322237899999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |+....|..+ +..|++++.+|+++++.+|
T Consensus       133 ~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~  162 (424)
T PLN02855        133 HSNIVPWQLVAQKTGAVLKFVGLTPDEVLD  162 (424)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCCCCCcC
Confidence            9999888887 6789999999998766543

>PRK14012 cysteine desulfurase; Provisional

Probab=99.72  E-value=1.9e-16  Score=115.57  Aligned_cols=107  Identities=58%  Similarity=0.996  Sum_probs=90.6

Q ss_pred             hhhh--hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          3 PYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         3 ~~~~--~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      +|+.  ..++||+++.+..++...+.++++|+.+|+++|+++++|+||+|+|+++++++.++.....++||+|+++..+|
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~  104 (404)
T PRK14012         25 PYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEH  104 (404)
T ss_pred             HHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCcc
Confidence            4555  56789987566666666788999999999999999999999999999999999887522236899999999999


Q ss_pred             hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|..++..|++++.++++++|.+|
T Consensus       105 ~s~~~~~~~~~~~g~~~~~v~~~~~g~~d  133 (404)
T PRK14012        105 KAVLDTCRQLEREGFEVTYLDPQSNGIID  133 (404)
T ss_pred             HHHHHHHHHHHhCCCEEEEEccCCCCcCC
Confidence            99999998887789999999999888654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.72  E-value=2.2e-16  Score=114.89  Aligned_cols=107  Identities=24%  Similarity=0.343  Sum_probs=91.1

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      +++++.++||+++.+..+......++++|+.+|+++|++ +++|+||+|+|+++++++.++....+++|++|++++.+||
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~  119 (403)
T TIGR01979        40 EYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHH  119 (403)
T ss_pred             HHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhh
Confidence            566677789987667777777889999999999999997 7899999999999999999874322378999999999999


Q ss_pred             hHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++...|..+ +..|++++.+|++++|.++
T Consensus       120 s~~~~~~~~~~~~g~~~~~v~~~~~~~~~  148 (403)
T TIGR01979       120 ANIVPWQLLAERTGATLKFIPLDDDGTLD  148 (403)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCCCCCCC
Confidence            998888877 5689999999999877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.71  E-value=8.5e-17  Score=116.10  Aligned_cols=107  Identities=28%  Similarity=0.386  Sum_probs=94.6

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+++.+.++||+++.+..+....+.++++|+.+|+++|+++ ++|+||+|+|++++.++.++... +++|++|+++..||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~-~~~g~~vl~~~~~~   98 (371)
T PF00266_consen   20 SDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP-LKPGDEVLVTSNEH   98 (371)
T ss_dssp             HHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH-GTTTCEEEEEESSH
T ss_pred             HHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc-cccccccccccccc
Confidence            45677789999777788888889999999999999999988 89999999999999999999422 38999999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |+...+|..+ ++.|++++++|.+.+|.+|
T Consensus        99 ~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~  128 (371)
T PF00266_consen   99 PSNRYPWEEIAKRKGAEVRVIPADPGGSLD  128 (371)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEGTTSSCS
T ss_pred             cccccccccccccchhhhccccccccchhh
Confidence            9999999998 4789999999998877654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.71  E-value=2.7e-16  Score=113.90  Aligned_cols=107  Identities=37%  Similarity=0.515  Sum_probs=90.9

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhc-cC-CCEEEEcCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYK-EK-KKHVITTQT   78 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~-~~-g~~vl~~~~   78 (110)
                      .+|+.+.++||++ .|..+......+.++|+.+++++++ ++++|+||+|+|++++++++++.+..+ ++ +++|+++..
T Consensus        20 ~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~   98 (382)
T TIGR03403        20 DPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEV   98 (382)
T ss_pred             HHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCC
Confidence            4677778899996 7888878888999999999999998 789999999999999999998743111 34 578999999


Q ss_pred             CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      |||++..++..++..|++++.+|++++|.+|
T Consensus        99 e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d  129 (382)
T TIGR03403        99 EHPAVRATCAFLESLGVEVTYLPINEQGTIT  129 (382)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence            9999999998888889999999998877654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.71  E-value=3.2e-16  Score=112.36  Aligned_cols=108  Identities=47%  Similarity=0.738  Sum_probs=89.8

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~   80 (110)
                      .+++...++||++..+.++....+.++++|+.+|+++++++++|+||+|+|++++.++.++.....++| ++|+++..||
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~   98 (353)
T TIGR03235        19 LPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEH   98 (353)
T ss_pred             HHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEccccc
Confidence            345555678998755677777788899999999999999999999999999999999988752111345 7899999999


Q ss_pred             hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|..++..|++++.+|++++|.+|
T Consensus        99 ~s~~~~~~~~~~~G~~v~~v~~~~~~~~d  127 (353)
T TIGR03235        99 PAVLEPIRALERNGFTVTYLPVDESGRID  127 (353)
T ss_pred             HHHHHHHHHHHhcCCEEEEEccCCCCcCC
Confidence            99999998887789999999998777554

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.66  E-value=2.7e-15  Score=108.05  Aligned_cols=106  Identities=27%  Similarity=0.382  Sum_probs=90.5

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      ++++..++||+++.+..+....+.+.++|+.++++++++ +++|++|+|+|+++++++.++.... .+|++|++++.+|+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~-~~g~~vl~~~~~~~   99 (373)
T cd06453          21 DYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRAN-KPGDEIVTSVMEHH   99 (373)
T ss_pred             HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcC-CCCCEEEECcchhH
Confidence            566677899998778888888899999999999999997 8899999999999999999987200 18999999999999


Q ss_pred             hHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      +...++..+ +..|++++.||++.+|.+|
T Consensus       100 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  128 (373)
T cd06453         100 SNIVPWQQLAERTGAKLKVVPVDDDGQLD  128 (373)
T ss_pred             HHHHHHHHHHhhcCcEEEEeecCCCCCcC
Confidence            988777766 4679999999998777554

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN03032 serine decarboxylase; Provisional

Probab=99.65  E-value=9.1e-16  Score=111.54  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=87.9

Q ss_pred             ChhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCC
Q psy17798          1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQT   78 (110)
Q Consensus         1 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~   78 (110)
                      |.+|+.+.++||++ .|..|..+.+..+++++.+|+++|++++++  +||+|+|||++..+.+... . .++++|+++..
T Consensus        43 ~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~-~-~~~~~vi~s~~  119 (374)
T PLN03032         43 LMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGRE-V-FPDGILYASRE  119 (374)
T ss_pred             HHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHH-h-CCCcEEEeCCC
Confidence            34677778999998 899999999999999999999999999887  9999999999988776532 1 35568999999


Q ss_pred             CChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         79 EHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        79 e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +|+|+..+++.+   |++++.||+|++|.+|
T Consensus       120 ~H~Sv~kaa~~l---g~~~~~V~~d~~g~id  147 (374)
T PLN03032        120 SHYSVFKAARMY---RMEAVKVPTLPSGEID  147 (374)
T ss_pred             ceeHHHHHHHHc---CCCCeEeeeCCCCcCc
Confidence            999999887654   6778899999999886

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.50  E-value=5.4e-13  Score=96.13  Aligned_cols=102  Identities=30%  Similarity=0.413  Sum_probs=82.6

Q ss_pred             hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++...+|++.+.|..+....+.++++|+.++++++++ +++|+||+|+++++++++.++.    ++||+|+++..+|++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~----~~gd~vl~~~~~~~~   98 (376)
T TIGR01977        23 FYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNS   98 (376)
T ss_pred             HHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc----CCCCEEEECcchhhH
Confidence            44444456765455555555688999999999999985 4599999999999999998865    799999999999999


Q ss_pred             HHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      +..+|..+ +..|++++.++.+++|.+|
T Consensus        99 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d  126 (376)
T TIGR01977        99 VARPLECLKEQIGVEITIVKCDNEGLIS  126 (376)
T ss_pred             HHHHHHHHHHHcCcEEEEEecCCCCCcC
Confidence            98888776 5569999999998777554

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.50  E-value=1.2e-13  Score=100.80  Aligned_cols=101  Identities=20%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .++.+.++||++ .+..+..+.+..+++++.+|+++|++++++  +||+|+||+++..+.....  +.++++|++++.||
T Consensus        44 ~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~--~~~~~~ii~s~~~H  120 (380)
T PRK02769         44 SFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARE--LFPDGTLYYSKDTH  120 (380)
T ss_pred             HhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHH--hCCCcEEEeCCCce
Confidence            455567899987 788787788899999999999999987775  8999999997765544321  25788999999999


Q ss_pred             hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +|+..+++.+   |++...||++++|.+|
T Consensus       121 ~Sv~ka~~~l---g~~~~~V~~~~~g~id  146 (380)
T PRK02769        121 YSVSKIARLL---RIKSRVITSLPNGEID  146 (380)
T ss_pred             ehHHHHHHHc---CCCCceeccCCCCcCc
Confidence            9999888665   6667788888888765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.50  E-value=7.2e-13  Score=96.25  Aligned_cols=105  Identities=24%  Similarity=0.344  Sum_probs=83.8

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++.....|++. .|.......+.++++|+.+++++|+++++|++++|+++++++++.++.. ..++||+|++++.+|++
T Consensus        39 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~-~~~~gd~vl~~~~~~~s  116 (397)
T TIGR01976        39 AALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR-RWGPGDEVIVTRLDHEA  116 (397)
T ss_pred             HHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh-cCCCCCEEEEcCCchHh
Confidence            344445567764 5666556667899999999999999888999999999999998888731 12789999999999999


Q ss_pred             HHHHHHHH-HhCCcEEEEecCCC-Ccccc
Q psy17798         83 VLDSCRIL-EGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        83 ~~~~~~~l-~~~g~~v~~v~~~~-~G~~~  109 (110)
                      +...|..+ +..|++++.+++++ +|.++
T Consensus       117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (397)
T TIGR01976       117 NISPWLQAAERAGAKVKWARVDEATGELH  145 (397)
T ss_pred             HHHHHHHHHHhcCCEEEEEeccccCCCcC
Confidence            98888665 67899999999886 45443

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.41  E-value=7e-13  Score=98.46  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             hhhhhhc--CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEe---CChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798          3 PYLTNAY--GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFT---SGATESNNIAVKGVARFYKEKKKHVITT   76 (110)
Q Consensus         3 ~~~~~~~--~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t---~gat~a~~~i~~~l~~~~~~~g~~vl~~   76 (110)
                      +.+.+.|  +||++ .|..|.+..+.+++ +|+.+++++++++++++++   +|++++++.++.++.    ++||+|+++
T Consensus        56 ~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~----~~gd~Ii~~  130 (452)
T PTZ00094         56 SCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL----QPHDRIMGL  130 (452)
T ss_pred             chhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc----CCCCEEEec
Confidence            4455666  99997 78999998899995 9999999999999998888   899999999999986    899999999


Q ss_pred             CCCChhHHHHHHHHHh-------CCcEEEEecCCCCcccc
Q psy17798         77 QTEHKCVLDSCRILEG-------EGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        77 ~~e~ps~~~~~~~l~~-------~g~~v~~v~~~~~G~~~  109 (110)
                      ..||+++..++..+++       .++++..++++++|.+|
T Consensus       131 ~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id  170 (452)
T PTZ00094        131 DLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLID  170 (452)
T ss_pred             ccccCCcccccccccccccccceeeeeeeecccCCCCCcC
Confidence            9999999888755421       12456677788778776

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.40  E-value=5.4e-13  Score=99.36  Aligned_cols=82  Identities=21%  Similarity=0.362  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         20 GWESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      .+....+..++|+.+++++.      |++++|++|+|+++|++++++.+.    ++||.|++   |.|+|..+...++..
T Consensus       127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~----~pGd~v~v---E~PtY~~~~~~~~~~  199 (459)
T COG1167         127 QYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL----DPGDTVLV---EDPTYPGALQALEAL  199 (459)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC----CCCCEEEE---cCCCcHHHHHHHHHc
Confidence            33444688899999999873      678999999999999999999987    89999995   888888888888999


Q ss_pred             CcEEEEecCCCCccc
Q psy17798         94 GFNVLGSNPGQGGNF  108 (110)
Q Consensus        94 g~~v~~v~~~~~G~~  108 (110)
                      |+++..||+|++|+.
T Consensus       200 g~~~~~vp~d~~G~~  214 (459)
T COG1167         200 GARVIPVPVDEDGID  214 (459)
T ss_pred             CCcEEecCCCCCCCC
Confidence            999999999999875

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.35  E-value=2.4e-12  Score=92.90  Aligned_cols=99  Identities=18%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             hhhhhhhcCCCCCcCChHH---HHHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-hHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798          2 LPYLTNAYGNPHSRTHAYG---WESEKAVEDARQEIATLINC-DPKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVITT   76 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~---~~~~~~~~~~R~~la~~l~~-~~~~i~~t~g-at~a~~~i~~~l~~~~~~~g~~vl~~   76 (110)
                      .+||.+.. |+++|.|..+   .+..+.++++|+.+++++++ ++++|+||+| +|++++.++.++... .+++++|++.
T Consensus        19 ~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~-~~~~~~i~~g   96 (355)
T cd00611          19 QKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD-KGTADYVVTG   96 (355)
T ss_pred             HHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC-CCeEEEEECC
Confidence            35565544 9999888888   56778999999999999998 5788999988 999999999998621 1367778764


Q ss_pred             CCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         77 QTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        77 ~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..+|.+    .+..++.|++++.++.+++|
T Consensus        97 ~~~~~~----~~~a~~~g~~~~~~~~~~~g  122 (355)
T cd00611          97 AWSAKA----AKEAKRYGGVVVIVAAKEEG  122 (355)
T ss_pred             HHHHHH----HHHHHhcCCCcEEEeccccc
Confidence            444333    22336779999999987544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.30  E-value=1.9e-11  Score=90.48  Aligned_cols=100  Identities=10%  Similarity=0.030  Sum_probs=75.6

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-C-CcEEE--eCChHHHHHHHHHHhHHhhc----c-----
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-P-KEIIF--TSGATESNNIAVKGVARFYK----E-----   68 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~-~~i~~--t~gat~a~~~i~~~l~~~~~----~-----   68 (110)
                      .+++.+.++||++ .   +... +.++++|+.+|+++|++ + +++.|  |+|+|||+++++.+......    +     
T Consensus        62 ~~~l~~~~~np~s-~---~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~  136 (431)
T TIGR01788        62 DETINKNMIDKDE-Y---PQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPT  136 (431)
T ss_pred             HHHHhcCCCCccc-C---ccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4566667789985 2   3344 79999999999999997 4 57776  79999999999877542110    1     


Q ss_pred             CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC-cccc
Q psy17798         69 KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG-GNFL  109 (110)
Q Consensus        69 ~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~-G~~~  109 (110)
                      .+.+|+++..||+|+..+.+.   .|++++.||+|++ |.+|
T Consensus       137 ~~~~ii~s~~~H~sv~ka~~~---lg~~v~~i~~d~~~~~vd  175 (431)
T TIGR01788       137 DKPNLVMGSNVQVCWEKFARY---FDVELREVPMDPGRYVID  175 (431)
T ss_pred             CCcEEEEcCcchHHHHHHHHH---cCceeEEEecCCCceeeC
Confidence            124899999999999877654   4899999999986 4554

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.29  E-value=1.8e-11  Score=87.77  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      .+++|+++|+++++++++|++|+|++++++++++++.    ++||+|++++..|+.+...   .+..|++++.+|+++++
T Consensus        62 ~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~vlv~~P~y~~~~~~---~~~~g~~~~~v~~~~~~  134 (353)
T PRK05387         62 ADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF----NHDRPLLFPDITYSFYPVY---AGLYGIPYEEIPLDDDF  134 (353)
T ss_pred             HHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEeCCCHHHHHHH---HHHcCCEEEEeecCCCC
Confidence            4689999999999999999999999999999999987    8999999887777655433   35579999999998776


Q ss_pred             ccc
Q psy17798        107 NFL  109 (110)
Q Consensus       107 ~~~  109 (110)
                      .+|
T Consensus       135 ~~d  137 (353)
T PRK05387        135 SID  137 (353)
T ss_pred             CCC
Confidence            544

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.27  E-value=5.1e-11  Score=86.85  Aligned_cols=97  Identities=18%  Similarity=0.170  Sum_probs=76.8

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +|. ..++||++-.|..+....+.+.++|+.+|+++|++  +++||+|++++++.++.++.    ++||+|+++..+|++
T Consensus        42 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~--~~~~~~g~t~a~~~al~~l~----~~gd~Vlv~~~~h~s  114 (387)
T PRK09331         42 EYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD--EARVTHGAREGKFAVMHSLC----KKGDYVVLDGLAHYT  114 (387)
T ss_pred             HHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----CCCCEEEECCCchHH
Confidence            344 35567753235556666678999999999999984  58899999999999999986    799999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEecC--CCCcccc
Q psy17798         83 VLDSCRILEGEGFNVLGSNP--GQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~~v~~v~~--~~~G~~~  109 (110)
                      ....   ++..|++++.+|+  +++|.+|
T Consensus       115 ~~~~---~~~~G~~~~~v~~~~~~~~~~d  140 (387)
T PRK09331        115 SYVA---AERAGLNVREVPKTGYPEYKIT  140 (387)
T ss_pred             HHHH---HHHcCCEEEEEeCccCcCCCcC
Confidence            8754   3557999999998  5556544

>TIGR01814 kynureninase kynureninase

Probab=99.26  E-value=1.2e-11  Score=90.48  Aligned_cols=76  Identities=8%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC---CCEEEEcCCCChhHHHHHHHH-HhCCcEE----EE
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK---KKHVITTQTEHKCVLDSCRIL-EGEGFNV----LG   99 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~---g~~vl~~~~e~ps~~~~~~~l-~~~g~~v----~~   99 (110)
                      .+.++.+ +++|++|++|+||+|+|+++++++.++.    ++   +++|+++..|||++..+|... ++.|+++    +.
T Consensus        73 ~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~  147 (406)
T TIGR01814        73 DESLLKL-RLVGAKEDEVVVMNTLTINLHLLLASFY----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQ  147 (406)
T ss_pred             hhhhccc-cccCCCCCcEEEeCCchHHHHHHHHHhc----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEE
Confidence            3444446 8999999999999999999999999874    33   347899899999999988754 6678887    56


Q ss_pred             ecCCCCccc
Q psy17798        100 SNPGQGGNF  108 (110)
Q Consensus       100 v~~~~~G~~  108 (110)
                      ++.+++|.+
T Consensus       148 ~~~~~~g~~  156 (406)
T TIGR01814       148 IEPREEETL  156 (406)
T ss_pred             eccCCCCcc
Confidence            777665554

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.24  E-value=6.6e-11  Score=85.29  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=72.0

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      .++||+...+..+....+.+.++++.+|+++|+  +++++|+|++++++.++.++.    ++||+|+++..+|.+.... 
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----~~gd~Vl~~~~~~~~~~~~-   99 (361)
T cd06452          27 GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----EKGDWVVVDGLAHYTSYVA-   99 (361)
T ss_pred             ccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCcchHHHHH-
Confidence            456665423344444456789999999999998  789999999999999999886    7999999998888887643 


Q ss_pred             HHHHhCCcEEEEecCCCCc
Q psy17798         88 RILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        88 ~~l~~~g~~v~~v~~~~~G  106 (110)
                        ++..|++++.+|++.+|
T Consensus       100 --~~~~g~~~~~v~~~~~~  116 (361)
T cd06452         100 --AERAGLNVREVPNTGHP  116 (361)
T ss_pred             --HHhcCCEEEEEecCCCC
Confidence              45679999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK09105 putative aminotransferase; Provisional

Probab=99.23  E-value=7.7e-11  Score=85.53  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+.+|+++++++++|++|+|+++++++++.++.    ++||+|++++..|+.+..   ..+..|++++.+|.++++
T Consensus        80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~----~~gd~Vli~~P~y~~~~~---~~~~~g~~~~~v~~~~~~  152 (370)
T PRK09105         80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT----SPTAGLVTADPTYEAGWR---AADAQGAPVAKVPLRADG  152 (370)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc----CCCCEEEEeCCChHHHHH---HHHHcCCeEEEecCCCCC
Confidence            6789999999999999999999999999999999887    799999998877777654   345679999999998765


Q ss_pred             ccc
Q psy17798        107 NFL  109 (110)
Q Consensus       107 ~~~  109 (110)
                      .+|
T Consensus       153 ~~d  155 (370)
T PRK09105        153 AHD  155 (370)
T ss_pred             CCC
Confidence            443

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.22  E-value=8.5e-11  Score=84.64  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..++|+++|+++++++++|++|+|++++++++++++.    ++| |+|++....|+.+..   ..+..|++++.+|++++
T Consensus        62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~---~~~~~g~~v~~v~~~~~  134 (354)
T PRK04635         62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAI---SAETFNVGVKALPLTAD  134 (354)
T ss_pred             HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHH---HHHHcCCEEEEEecCCC
Confidence            5789999999999999999999999999999999887    677 899986666655443   33567999999999865


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       135 ~~~  137 (354)
T PRK04635        135 YQL  137 (354)
T ss_pred             CCC
Confidence            544

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.21  E-value=9.5e-11  Score=84.29  Aligned_cols=76  Identities=16%  Similarity=0.137  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+++|+++++++++|++|+|+++++++++.++.    ++||+|+++...|+.+.   ...+..|++++.+++++++
T Consensus        61 ~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~----~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~  133 (351)
T PRK14807         61 AEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI----NKGDVVIYPHPSFAMYS---VYSKIAGAVEIPVKLKEDY  133 (351)
T ss_pred             HHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHH---HHHHHcCCeEEEeecCCCC
Confidence            5789999999999999999999999999999999876    89999998655544332   2335689999999998765


Q ss_pred             ccc
Q psy17798        107 NFL  109 (110)
Q Consensus       107 ~~~  109 (110)
                      .+|
T Consensus       134 ~~d  136 (351)
T PRK14807        134 TYD  136 (351)
T ss_pred             CCC
Confidence            443

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.19  E-value=1.1e-10  Score=84.62  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcc
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGN  107 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~  107 (110)
                      .++|+++|+++++++++|++|+|+++++++++.++.    ++||+|+++...|+.   ....++..|++++.+|+++++.
T Consensus        74 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~vli~~P~y~~---~~~~~~~~g~~~~~v~~~~~~~  146 (371)
T PRK05166         74 RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL----RPGDRVVTLYPSFPL---HEDYPTMMGARVERVTVTPDLG  146 (371)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCChHH---HHHHHHHcCCeEEEeecCCCCC
Confidence            379999999999999999999999999999999886    899999976555554   3444566899999999987654


Q ss_pred             cc
Q psy17798        108 FL  109 (110)
Q Consensus       108 ~~  109 (110)
                      +|
T Consensus       147 ~~  148 (371)
T PRK05166        147 FD  148 (371)
T ss_pred             CC
Confidence            43

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.17  E-value=2e-10  Score=82.08  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcc
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGN  107 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~  107 (110)
                      +++|+.+|+++++++++|++|+|++++++.++.++.    ++||+|++++..|+.+..   ..+..|++++.+|++++|.
T Consensus        57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~----~~gd~v~~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~  129 (346)
T TIGR01141        57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL----EPGDAVLVPPPTYSMYEI---SAKIHGAEVVKVPLDEDGQ  129 (346)
T ss_pred             HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCCHHHHHH---HHHHcCCeEEEeccCCCCC
Confidence            689999999999999999999999999999998876    789999998877765443   2355799999999988775


Q ss_pred             cc
Q psy17798        108 FL  109 (110)
Q Consensus       108 ~~  109 (110)
                      +|
T Consensus       130 ~d  131 (346)
T TIGR01141       130 LD  131 (346)
T ss_pred             CC
Confidence            54

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.17  E-value=2.2e-10  Score=83.08  Aligned_cols=74  Identities=19%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+++|+++++++++|++|+|++++++++++++.    ++||+|++++..|+.+...   .+..|++++.+|++++
T Consensus        65 g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~----~~gd~vlv~~P~y~~~~~~---~~~~g~~v~~v~~~~~  137 (366)
T PRK01533         65 GATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL----KAGDNIVTAGATFPQYRHH---AIIEGCEVKEVALNNG  137 (366)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHH---HHHcCCEEEEeecCCC
Confidence            45789999999999999999999999999999999987    7999999876666555543   4567999999999754


Q ss_pred             c
Q psy17798        106 G  106 (110)
Q Consensus       106 G  106 (110)
                      +
T Consensus       138 ~  138 (366)
T PRK01533        138 V  138 (366)
T ss_pred             C
Confidence            3

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.14  E-value=4.2e-10  Score=81.95  Aligned_cols=75  Identities=13%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+++|+++++++++|++|+|+++++++++.++.    ++||+|+++...|+.+...   .+..|++++.+|.++++
T Consensus        88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~----~~gd~Vlv~~P~y~~y~~~---~~~~g~~~~~v~~~~~~  160 (380)
T PLN03026         88 SRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL----DPGDKIIDCPPTFGMYVFD---AAVNGAEVIKVPRTPDF  160 (380)
T ss_pred             HHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCChHHHHHH---HHHcCCEEEEeecCCCC
Confidence            5689999999999999999999999999999998876    7999999887777654433   24579999999987654


Q ss_pred             cc
Q psy17798        107 NF  108 (110)
Q Consensus       107 ~~  108 (110)
                      .+
T Consensus       161 ~~  162 (380)
T PLN03026        161 SL  162 (380)
T ss_pred             Cc
Confidence            33

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.13  E-value=4.1e-10  Score=90.12  Aligned_cols=80  Identities=11%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChH----HHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGAT----ESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat----~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ...+.+.++|+.+++++|+  ++|+|++|++    ++++++++++..   .+||    +||++..||+++..+|..   .
T Consensus       565 g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~---~~Gd~~r~~vli~~~aH~sn~a~a~~---~  636 (993)
T PLN02414        565 GYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHL---SRGDHHRNVCIIPVSAHGTNPASAAM---C  636 (993)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHh---ccCCCCCCEEEeCCCcCccCHHHHHH---C
Confidence            4567899999999999998  8999999999    999999999962   3377    899999999999999865   6


Q ss_pred             CcEEEEecCCCCcccc
Q psy17798         94 GFNVLGSNPGQGGNFL  109 (110)
Q Consensus        94 g~~v~~v~~~~~G~~~  109 (110)
                      |++++.||+|++|.+|
T Consensus       637 G~~vv~v~~d~~G~vD  652 (993)
T PLN02414        637 GMKIVVVGTDAKGNIN  652 (993)
T ss_pred             CCEEEEeccCCCCCcC
Confidence            9999999999999876

>PRK08960 hypothetical protein; Provisional

Probab=99.13  E-value=1.9e-10  Score=83.66  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+.+++|+++|++++      +++++|++|+|+++++++++.++.    ++||+|++++.+||++...+.   ..|.+++
T Consensus        69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~---~~g~~~~  141 (387)
T PRK08960         69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV----DPGKHWLLADPGYPCNRHFLR---LVEGAAQ  141 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHHHH---hcCCeEE
Confidence            457889999999973      689999999999999999999886    899999999999998876554   4688999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       142 ~v~~~~~~  149 (387)
T PRK08960        142 LVPVGPDS  149 (387)
T ss_pred             EEecCccc
Confidence            99998653

>PRK07908 hypothetical protein; Provisional

Probab=99.11  E-value=3.1e-10  Score=81.47  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+++|+++++++++|++|+|+++++.++++ +     ++++ +++   ++|++...+..++..|++++.+|+++
T Consensus        58 ~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-----~~~~-viv---~~P~y~~~~~~~~~~G~~i~~v~~~~  127 (349)
T PRK07908         58 EDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-----RPRR-AAV---VHPSFTEPEAALRAAGIPVHRVVLDP  127 (349)
T ss_pred             cchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-----CCCe-EEE---eCCCChHHHHHHHHcCCEEEeeccCc
Confidence            457789999999999999999999999999999887 3     4654 443   57888888877788999999999987


Q ss_pred             Cccc
Q psy17798        105 GGNF  108 (110)
Q Consensus       105 ~G~~  108 (110)
                      ++.+
T Consensus       128 ~~~~  131 (349)
T PRK07908        128 PFRL  131 (349)
T ss_pred             ccCc
Confidence            5433

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.10  E-value=1.7e-09  Score=77.81  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++....+++..  +.   ......+++|+.+|+++|+++++++|++|+++++..++.++.....+++++|++++.+|++
T Consensus        42 ~~~~~~~~~~~~--~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s  116 (371)
T PRK13520         42 MFLETNLGDPGL--FP---GTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS  116 (371)
T ss_pred             HHHhcCCCCccc--Cc---cHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH
Confidence            344444556542  32   2345678999999999999888899999999999988877642111357899999999998


Q ss_pred             HHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +....   +..|++++.+|.+++|.+|
T Consensus       117 ~~~~~---~~~g~~~~~v~~~~~~~~d  140 (371)
T PRK13520        117 FDKAA---DMLGVELRRAPLDDDYRVD  140 (371)
T ss_pred             HHHHH---HHcCceEEEecCCCCCcCC
Confidence            65433   4569999999998777654

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.09  E-value=7.1e-10  Score=79.88  Aligned_cols=75  Identities=12%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..++|+.+|+++|+++++|++|+|+++++.++++++.    ++| ++|+++...|+.+...   .+..|++++.+|++++
T Consensus        59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~---~~~~G~~~~~v~~~~~  131 (351)
T PRK01688         59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVS---AETIGVEIRTVPTLDN  131 (351)
T ss_pred             hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHH---HHHcCCEEEEeecCCC
Confidence            3689999999999999999999999999999999876    676 8999877777665433   3557999999999766


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       132 ~~~  134 (351)
T PRK01688        132 WQL  134 (351)
T ss_pred             CCC
Confidence            443

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.08  E-value=8e-10  Score=79.51  Aligned_cols=72  Identities=13%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+++|+++++++++|++|+|+++++.++++++.    ++||+|+++...|+.+...   .+..|++++.+|++.
T Consensus        65 g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~v~~~~p~y~~~~~~---~~~~g~~~~~~~~~~  136 (359)
T PRK03158         65 YAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL----NPGTNTVMAEPTFSQYRHN---AIIEGAEVREVPLKD  136 (359)
T ss_pred             cHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh----CCCCEEEEcCCCHHHHHHH---HHHcCCeEEEEecCC
Confidence            46789999999999999999999999999999999886    7999999877666665443   345799999999873

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.08  E-value=2.3e-09  Score=79.35  Aligned_cols=81  Identities=21%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v  100 (110)
                      ...+.+.+.++.+++++|++++++++|+|+|+++..++.++..   .+|++|++++.+||++..++..+ +..|++++.+
T Consensus       109 g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v  185 (447)
T PRK00451        109 GTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI---TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV  185 (447)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh---cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence            3566788888999999999999999999999999988888752   68999999999999999998876 5579999999


Q ss_pred             cCCCC
Q psy17798        101 NPGQG  105 (110)
Q Consensus       101 ~~~~~  105 (110)
                      |++++
T Consensus       186 ~~~~~  190 (447)
T PRK00451        186 PYEDG  190 (447)
T ss_pred             cCCCC
Confidence            99865

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.07  E-value=8.5e-10  Score=79.97  Aligned_cols=73  Identities=16%  Similarity=0.133  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+++|+++++++++|++|+|+++++.+++.++.    ++||.|++.+..||.+....   +..|.+++.+|.+.++
T Consensus        69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd~vlv~~p~y~~~~~~~---~~~g~~~~~vp~~~~~  141 (369)
T PRK08153         69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV----EPGDPVVTSLGAYPTFNYHV---AGFGGRLVTVPYRDDR  141 (369)
T ss_pred             cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEECCCcchHHHHHH---HHcCCeEEEeeCCCCC
Confidence            5689999999999999999999999999999999876    79999999888888776544   3468999999987664

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.07  E-value=7e-10  Score=83.71  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         24 EKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ..++.++|++||+++      ++++++|++|+|+++++++++.++.    ++||+|+++...|+.+....   +..|+++
T Consensus       184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~----~~Gd~Vli~~P~y~~y~~~~---~~~g~~~  256 (517)
T PRK13355        184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL----DDGDEVLIPSPDYPLWTACV---NLAGGTA  256 (517)
T ss_pred             CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC----CCCCEEEEcCCCCcCHHHHH---HHCCCEE
Confidence            346889999999999      6789999999999999999999886    89999999998888877654   4469999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.++++++
T Consensus       257 v~~~~~~~  264 (517)
T PRK13355        257 VHYRCDEQ  264 (517)
T ss_pred             EEeecCcc
Confidence            99998765

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.07  E-value=2.3e-09  Score=76.40  Aligned_cols=97  Identities=18%  Similarity=0.130  Sum_probs=73.0

Q ss_pred             CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhcc--------C--CCEEEEcC
Q psy17798         10 GNPHSRTHAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYKE--------K--KKHVITTQ   77 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~~--------~--g~~vl~~~   77 (110)
                      .|+....|..+....+..+++++.+++++|++  +++++||+|+|+|+++++.++......        +  ++.|++++
T Consensus        23 ~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (345)
T cd06450          23 KNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD  102 (345)
T ss_pred             cCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC
Confidence            34443345666666777888999999999985  568999999999999999887532111        2  34889999


Q ss_pred             CCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         78 TEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        78 ~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .+|+++..++..   .|++++.+|++++|.+|
T Consensus       103 ~~h~~~~~~~~~---~g~~~~~v~~~~~~~~d  131 (345)
T cd06450         103 QAHVSVEKAAAY---LDVKVRLVPVDEDGRMD  131 (345)
T ss_pred             cchhHHHHHHHH---HhcCeEEeeeCCCCCcC
Confidence            999998777654   38899999998877554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK03321 putative aminotransferase; Provisional

Probab=99.06  E-value=1e-09  Score=78.72  Aligned_cols=76  Identities=12%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..+++|+.+|+++++++++|++|+|+++++..++.++.    ++||+|+++...++.+..   ..+..|++++.+|++++
T Consensus        58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~----~~gd~Vli~~p~y~~~~~---~~~~~g~~~~~v~~~~~  130 (352)
T PRK03321         58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA----GPGDEVIFAWRSFEAYPI---LVQVAGATPVQVPLTPD  130 (352)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc----CCCCEEEeCCCCHHHHHH---HHHHcCCEEEEccCCCC
Confidence            56789999999999999999999999999999988876    899999976544444333   33567999999999855


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       131 ~~~  133 (352)
T PRK03321        131 HTH  133 (352)
T ss_pred             CCC
Confidence            443

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.05  E-value=8.5e-10  Score=80.59  Aligned_cols=75  Identities=8%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhC------CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN------CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|++||++++      +++ ++|++|+|+++++.+++.++.    ++||.|+++...||.+....   +..|+++
T Consensus        69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~---~~~G~~~  141 (399)
T PRK07681         69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA----NPGDIILVPDPGYTAYETGI---QMAGATS  141 (399)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC----CCCCEEEECCCCccchHHHH---HhcCCEE
Confidence            367789999999985      577 799999999999999999886    89999998777777665544   5579999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+++++
T Consensus       142 ~~v~~~~~~  150 (399)
T PRK07681        142 YYMPLKKEN  150 (399)
T ss_pred             EEEecCCCC
Confidence            999998653

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.05  E-value=2.2e-09  Score=68.65  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ++++|+.+++++++++++++|++|+|+|+.++++++.    +++++|+++..+|++...  ...+..|++++.++.+.++
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~   75 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL----GPGDEVIVDANGHGSRYW--VAAELAGAKPVPVPVDDAG   75 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC----CCCCEEEEeecccceehh--hHHHhcCCEEEEeccCCCC
Confidence            5689999999999888999999999999999999986    678999999999999874  3345679999999987654


Q ss_pred             c
Q psy17798        107 N  107 (110)
Q Consensus       107 ~  107 (110)
                      .
T Consensus        76 ~   76 (170)
T cd01494          76 Y   76 (170)
T ss_pred             c
Confidence            3

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.05  E-value=2.9e-09  Score=76.72  Aligned_cols=98  Identities=17%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-h-ccCCCEEEEcCCCCh
Q psy17798          4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-Y-KEKKKHVITTQTEHK   81 (110)
Q Consensus         4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~-~~~g~~vl~~~~e~p   81 (110)
                      +++...++++  .+. +  ..+..+++|+.+|+++|++++++++++|+++++..++.++... . .++|++|++++.+|+
T Consensus        43 ~~~~~~~~~~--~~~-~--~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~  117 (373)
T TIGR03812        43 FIETNLGDPG--LFP-G--TKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHF  117 (373)
T ss_pred             HhhcCCCCcc--cCc-c--HHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchH
Confidence            4444456665  233 2  3456789999999999999889999999999998887765420 0 136689999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++....   +..|++++.+|.++++.+|
T Consensus       118 ~~~~~~---~~~G~~~~~v~~~~~~~~d  142 (373)
T TIGR03812       118 SFEKAA---EMLGLELRYAPLDEDYTVD  142 (373)
T ss_pred             HHHHHH---HHcCCeEEEEeeCCCCCcC
Confidence            865543   4579999999988776544

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.04  E-value=3.2e-09  Score=76.12  Aligned_cols=83  Identities=11%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...+..+++|+.+++++|+++ +.+++|+|+|+++++++.++.    .+|++|+++...|++... ...++..|++++.+
T Consensus        29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~----~~g~~vl~~~~~~~~~~~-~~~~~~~g~~~~~v  103 (356)
T cd06451          29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL----EPGDKVLVGVNGVFGDRW-ADMAERYGADVDVV  103 (356)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC----CCCCEEEEecCCchhHHH-HHHHHHhCCCeEEe
Confidence            345678999999999999954 458899999999999999886    789999998877877421 23346679999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |+++++.+|
T Consensus       104 ~~~~~~~~~  112 (356)
T cd06451         104 EKPWGEAVS  112 (356)
T ss_pred             ecCCCCCCC
Confidence            998765544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.04  E-value=2e-09  Score=77.43  Aligned_cols=77  Identities=8%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+.+|++++.++ ++|++|+|+++++.++++++.    ++||+|+++...|+.+   ....+..|++++.+|+++
T Consensus        64 ~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~----~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~i~~~~  136 (356)
T PRK04870         64 RAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA----KPGATVLAPEPGFVMY---RMSAKLAGLEFVGVPLTA  136 (356)
T ss_pred             CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc----CCCCEEEECCCCHHHH---HHHHHHcCCEEEEecCCC
Confidence            35789999999999865 589999999999999998876    7999999865555443   334466899999999987


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      ++.+|
T Consensus       137 ~~~~d  141 (356)
T PRK04870        137 DFTLD  141 (356)
T ss_pred             CCCCC
Confidence            65544

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.03  E-value=1.5e-09  Score=78.25  Aligned_cols=71  Identities=14%  Similarity=0.167  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      .++|+.+|+++++++++|++|+|+++++++++.++.    ++||+|+++...|+.+...   .+..|++++.+|++..
T Consensus        70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd~vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~  140 (367)
T PRK02731         70 FELKAALAEKFGVDPERIILGNGSDEILELLARAYL----GPGDEVIYSEHGFAVYPIA---AQAVGAKPVEVPAKDY  140 (367)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEecCCHHHHHHH---HHHcCCeEEEecccCC
Confidence            589999999999999999999999999999999886    7899999887776654433   3557999999998543

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.03  E-value=2e-09  Score=77.53  Aligned_cols=72  Identities=8%  Similarity=0.072  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+++|+++++++++|++|+|++++++++++++.    ++||.|++.+..|+.+.   ...+..|.+++.+|++.
T Consensus        66 ~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~----~~gd~V~v~~P~y~~~~---~~~~~~g~~~~~~~l~~  137 (357)
T PRK14809         66 SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML----DPGDTVLVPDPGFAYYG---MSARYHHGEVREYPVSK  137 (357)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHH---HHHHHcCCeEEEEeccc
Confidence            35689999999999999999999999999999999886    89999998665555433   23355788999998864

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.02  E-value=2.4e-09  Score=77.72  Aligned_cols=72  Identities=18%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +...++|+++|+++++++++|++|+|++++++++++++.    .+||+|++++..|+.+.   ..++..|++++++|++
T Consensus        66 ~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~----~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~  137 (380)
T PRK06225         66 EGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL----SPGDNAVTPDPGYLIID---NFASRFGAEVIEVPIY  137 (380)
T ss_pred             cchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCCCcchH---HHHHHhCceEEeeccc
Confidence            457899999999999999999999999999999999886    78999998876666543   3335679999999975

>PRK07324 transaminase; Validated

Probab=99.01  E-value=1.1e-09  Score=79.54  Aligned_cols=74  Identities=23%  Similarity=0.269  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+..++|++||++++ +++++|++|+|+++|+.+++.++.    .+||+|+++...|++   .+...+..|++++.+|++
T Consensus        62 ~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~---~~~~~~~~g~~v~~v~~~  134 (373)
T PRK07324         62 EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGDHVISVYPTYQQ---LYDIPESLGAEVDYWQLK  134 (373)
T ss_pred             CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchh---HHHHHHHcCCEEEEEecc
Confidence            467899999999985 689999999999999999999886    899999986544444   444456689999999998


Q ss_pred             CC
Q psy17798        104 QG  105 (110)
Q Consensus       104 ~~  105 (110)
                      ++
T Consensus       135 ~~  136 (373)
T PRK07324        135 EE  136 (373)
T ss_pred             cc
Confidence            63

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.01  E-value=9.6e-10  Score=79.96  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|+++    |  ++++ +|++|+|+++++.++++++.    .+||+|++....|+.+.   ..++..|+++
T Consensus        68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~---~~~~~~g~~~  140 (388)
T PRK07366         68 HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL----NPGDFALLLDPGYPSHA---GGVYLAGGQI  140 (388)
T ss_pred             CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchH---HHHHhcCCEE
Confidence            45678999999988    3  6788 69999999999999999887    79999998665555554   4445679999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+++++
T Consensus       141 ~~v~~~~~~  149 (388)
T PRK07366        141 YPMPLRAEN  149 (388)
T ss_pred             EEEECCCcc
Confidence            999998654

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.01  E-value=2.4e-09  Score=78.17  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ..+.++|+.+|++++      ++|++|++|+|++++++.+++++.    .+||.|+++...|+.+...   ++..|++++
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vli~~p~~~~~~~~---~~~~g~~v~  145 (394)
T PRK06836         73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL----NPGDEVIVFAPYFVEYRFY---VDNHGGKLV  145 (394)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHH---HHHcCCEEE
Confidence            467789999999884      579999999999999999999886    7999999988777765443   356799999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|++++
T Consensus       146 ~v~~~~~  152 (394)
T PRK06836        146 VVPTDTD  152 (394)
T ss_pred             EEecCCc
Confidence            9999876

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.00  E-value=3e-09  Score=76.49  Aligned_cols=75  Identities=11%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhCCCCCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      .+++|+.+|+++++++++|++ |+|++++++.+++++.    ++||+|+++...|+.+..   .++..|++++.+|.+++
T Consensus        71 ~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~----~~gd~vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~  143 (361)
T PRK00950         71 APELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI----DPGDEVIIPTPTFSYYEI---SAKAHGAKPVYAKREED  143 (361)
T ss_pred             HHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc----CCCCEEEEcCCChHHHHH---HHHHcCCEEEEeecCCC
Confidence            378999999999999999999 7899999999998876    799999987766655433   34567999999997766


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       144 ~~~  146 (361)
T PRK00950        144 FSL  146 (361)
T ss_pred             CCc
Confidence            443

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.00  E-value=3.2e-09  Score=76.11  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+++|+++++++++|++|+|++++++.++..+      +||+|+++...|+.+...   .+..|++++.++++++
T Consensus        56 g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~------~gd~V~v~~P~y~~~~~~---~~~~g~~~~~v~~~~~  126 (337)
T PRK03967         56 TSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF------EGKHIVITPPTFGMYSFY---AKLNGIPVIDVPLKED  126 (337)
T ss_pred             CHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh------CCCeEEEeCCChHHHHHH---HHHcCCeEEEeecCCC
Confidence            5678999999999999999999999999999887653      589999877766644332   2557999999999876


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       127 ~~~  129 (337)
T PRK03967        127 FTI  129 (337)
T ss_pred             CCc
Confidence            444

>PRK09265 aminotransferase AlaT; Validated

Probab=99.00  E-value=3e-09  Score=77.85  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++      ++++++|++|+|+++++.++++++.    ++||+|++++.+|+.+...+   +..|.+++
T Consensus        72 ~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~v  144 (404)
T PRK09265         72 KGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL----NNGDEVLVPAPDYPLWTAAV---SLSGGKPV  144 (404)
T ss_pred             CCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC----CCCCEEEEeCCCCcChHHHH---HHcCCEEE
Confidence            34678999999998      6889999999999999999999876    89999999999998766654   34688888


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .++++.+
T Consensus       145 ~~~~~~~  151 (404)
T PRK09265        145 HYLCDEE  151 (404)
T ss_pred             EEecccc
Confidence            8887743

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.00  E-value=1.8e-09  Score=77.87  Aligned_cols=73  Identities=19%  Similarity=0.081  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+++|+++++++++|++|+|+++++.++++++.     +|+.|++....|+.+.   ..++..|++++.+|+++++
T Consensus        59 ~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-----~g~~vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~  130 (360)
T PRK07392         59 YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-----QLRAVYLITPAFGDYR---RALRAFGATVKELPLPLDQ  130 (360)
T ss_pred             HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----CCCeEEEECCCcHHHH---HHHHHcCCeEEEEeccccc
Confidence            3589999999999999999999999999999988753     5788987655555544   4445689999999998654


Q ss_pred             c
Q psy17798        107 N  107 (110)
Q Consensus       107 ~  107 (110)
                      .
T Consensus       131 ~  131 (360)
T PRK07392        131 P  131 (360)
T ss_pred             C
Confidence            3

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=98.99  E-value=4.9e-09  Score=75.51  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCE-EEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         22 ESEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKH-VITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~-vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ...+.++++|+.+++++|++++  +|+||+|+|++++.++.++.    .++++ |++++.+|++...  ...+..|++++
T Consensus        32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~----~~~~~vlv~~~~~~~~~~~--~~a~~~g~~~~  105 (363)
T TIGR02326        32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV----PKDGKLLVVINGAYGARIV--QIAEYLGIPHH  105 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC----CCCCeEEEEeCChhhHHHH--HHHHHcCCceE
Confidence            5567899999999999999764  79999999999999999987    45655 5556666665321  22366899999


Q ss_pred             EecCCCCcccc
Q psy17798         99 GSNPGQGGNFL  109 (110)
Q Consensus        99 ~v~~~~~G~~~  109 (110)
                      .+|+++++.+|
T Consensus       106 ~v~~~~~~~~d  116 (363)
T TIGR02326       106 VVDTGEVEPPD  116 (363)
T ss_pred             EEeCCCCCCCC
Confidence            99998766544

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=98.99  E-value=2.2e-09  Score=80.86  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         24 EKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ..+..++|++||++++        ++|++|++|+|+++++.+++.++.    ++||.|+++...||.+...+.  ...|+
T Consensus        93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~--~~~G~  166 (496)
T PLN02376         93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLR--WRTGV  166 (496)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHH--hhCCC
Confidence            3466889999999985        689999999999999999999987    899999988877777665332  14699


Q ss_pred             EEEEecCCC
Q psy17798         96 NVLGSNPGQ  104 (110)
Q Consensus        96 ~v~~v~~~~  104 (110)
                      +++.||++.
T Consensus       167 ~vv~v~~~~  175 (496)
T PLN02376        167 EIIPVPCSS  175 (496)
T ss_pred             EEEEEeCCC
Confidence            999999963

>PRK05957 aspartate aminotransferase; Provisional

Probab=98.98  E-value=4.1e-09  Score=76.86  Aligned_cols=79  Identities=10%  Similarity=0.037  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhCC--C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         24 EKAVEDARQEIATLINC--D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~--~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ....+.+++.+++++|+  + +++|++|+|+++++..++.++.    ++||+|++++..|+.+...+   +..|++++.+
T Consensus        68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v  140 (389)
T PRK05957         68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT----DPGDEIILNTPYYFNHEMAI---TMAGCQPILV  140 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCCcCHHHHH---HhcCCEEEEe
Confidence            34455666666666676  4 6789999999999999998876    79999999887777665433   4579999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |+++++.+|
T Consensus       141 ~~~~~~~~d  149 (389)
T PRK05957        141 PTDDNYQLQ  149 (389)
T ss_pred             ecCCCCCcC
Confidence            998665443

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=98.98  E-value=4.2e-09  Score=76.27  Aligned_cols=70  Identities=14%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..++|+++|+++++++++|++|+|++++++++++++.    .+| +.|++++..|+.+..   ..+..|++++.+|++
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~---~~~~~g~~~~~v~~~  131 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAV---CARLQNAPLVEVPLV  131 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHH---HHHHcCCEEEEEecC
Confidence            5799999999999999999999999999999999886    677 788876655543332   225579999999985

>PRK07337 aminotransferase; Validated

Probab=98.98  E-value=3.5e-09  Score=77.02  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ...+++|+++|+++    +  +++++|++|+|+++|+++++.++.    ++||+|+++...|+++...+   +..|++++
T Consensus        67 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~  139 (388)
T PRK07337         67 LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV----ERGDEVLMPDPSYPCNRHFV---AAAEGRPV  139 (388)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHH---HHcCCEEE
Confidence            35778999999987    3  588999999999999999999886    89999999988888876544   45689999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|+++
T Consensus       140 ~~~~~~  145 (388)
T PRK07337        140 LVPSGP  145 (388)
T ss_pred             EeecCC
Confidence            999975

>PRK08361 aspartate aminotransferase; Provisional

Probab=98.98  E-value=3.2e-09  Score=77.37  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++      ++++++|++|+|+++++.+++.++.    ++|++|++++..|+++...   ++..|++++
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~g~~Vlv~~p~y~~~~~~---~~~~g~~~~  142 (391)
T PRK08361         70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL----EEGDEVIIPDPAFVCYVED---AKIAEAKPI  142 (391)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCCcccHHH---HHHcCCEEE
Confidence            35678999999987      3678999999999999999999886    7999999988888776543   345799999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|++++|
T Consensus       143 ~v~~~~~~  150 (391)
T PRK08361        143 RIPLREEN  150 (391)
T ss_pred             EEecCCcc
Confidence            99998653

>PLN02187 rooty/superroot1

Probab=98.97  E-value=4.9e-09  Score=78.31  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|++++      ++|++|++|+|+++++.++++++.    ++||+|+++...||.+....   +..|++++
T Consensus       108 ~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~---~~~g~~~~  180 (462)
T PLN02187        108 AGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA----RPNANILLPRPGFPHYDARA---AYSGLEVR  180 (462)
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc----CCCCEEEEeCCCCccHHHHH---HHcCCEEE
Confidence            457789999999983      689999999999999999999987    89999999888888765433   45799999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+++.
T Consensus       181 ~~~l~  185 (462)
T PLN02187        181 KFDLL  185 (462)
T ss_pred             EEeCc
Confidence            99874

>PTZ00377 alanine aminotransferase; Provisional

Probab=98.97  E-value=1.4e-09  Score=81.44  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         21 WESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +....++.++|++||++++      +++++|++|+|+++++.++++++..   ++||.|++....||.+...+   +..|
T Consensus       111 Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~~gD~Vlv~~P~y~~y~~~~---~~~g  184 (481)
T PTZ00377        111 YTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG---DPSDGVMIPIPQYPLYSAAI---TLLG  184 (481)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc---CCCCEEEECCCCchhHHHHH---HHcC
Confidence            3345578899999999985      5789999999999999999998751   58999998877777765544   4579


Q ss_pred             cEEEEecCCCC
Q psy17798         95 FNVLGSNPGQG  105 (110)
Q Consensus        95 ~~v~~v~~~~~  105 (110)
                      ++++.+|++++
T Consensus       185 ~~~v~v~~~~~  195 (481)
T PTZ00377        185 GKQVPYYLDEE  195 (481)
T ss_pred             CEEEEEEeccc
Confidence            99999999853

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=98.97  E-value=2.7e-09  Score=78.34  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhC------------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         25 KAVEDARQEIATLIN------------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      .+..++|+++|++++            +++++|++|+|+++++.+++.++.    ++||+|+++...|+.+...   ++.
T Consensus        75 ~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~P~y~~~~~~---~~~  147 (412)
T PTZ00433         75 VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC----DEGDNILVPAPGFPHYETV---CKA  147 (412)
T ss_pred             CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCcccHHHH---HHH
Confidence            457789999999885            578999999999999999999886    8999999887777776544   456


Q ss_pred             CCcEEEEecCCC
Q psy17798         93 EGFNVLGSNPGQ  104 (110)
Q Consensus        93 ~g~~v~~v~~~~  104 (110)
                      .|++++.+|+++
T Consensus       148 ~g~~~~~i~~~~  159 (412)
T PTZ00433        148 YGIEMRFYNCRP  159 (412)
T ss_pred             cCCEEEEEecCc
Confidence            799999999875

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.96  E-value=4e-09  Score=76.22  Aligned_cols=73  Identities=8%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+++|+++      ++++++|++|+|+++++.++++++.    ++||.|++....|+.+..   ..+..|++++.
T Consensus        66 g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd~v~v~~P~y~~~~~---~~~~~g~~~~~  138 (368)
T PRK03317         66 DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFG----GPGRTALGFVPSYSMHPI---IARGTHTEWVE  138 (368)
T ss_pred             chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHHH---HHHhcCCeeEE
Confidence            4568999999999      4689999999999999999999987    899999976555555443   34567888888


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|.+++
T Consensus       139 ~~~~~~  144 (368)
T PRK03317        139 GPRAAD  144 (368)
T ss_pred             cccCCC
Confidence            887654

>PRK09148 aminotransferase; Validated

Probab=98.96  E-value=4.4e-09  Score=77.16  Aligned_cols=75  Identities=11%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|+++    |  ++++ +|++|+|+++++.+++.++.    .+||+|+++...|+.+...+   +..|+++
T Consensus        68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~---~~~g~~v  140 (405)
T PRK09148         68 KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT----APGDVILCPNPSYPIHAFGF---IMAGGVI  140 (405)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc----CCCCEEEEcCCCCcccHHHH---HhcCCEE
Confidence            45678999999987    3  5677 89999999999999999987    79999999888888876555   4579999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+++++
T Consensus       141 ~~v~~~~~~  149 (405)
T PRK09148        141 RSVPAEPDE  149 (405)
T ss_pred             EEEeCCCCC
Confidence            999998654

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=98.95  E-value=2.2e-09  Score=78.23  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      ++|+. .+..+....+.+++ .|+.+++++|++..+|++++ +++|+..++.++.    ++||+|+++..+|+++...+.
T Consensus        50 g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~s-gt~a~~~~l~~l~----~~Gd~Vl~~~~~~~~~~~~~~  123 (402)
T cd00378          50 GYPGK-RYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHS-GSQANLAVYFALL----EPGDTIMGLDLSHGGHLTHGS  123 (402)
T ss_pred             CCCCC-cccCCchHHHHHHHHHHHHHHHHhCCCceeeecCC-cHHHHHHHHHHhc----CCCCEEEEecCccCccccccc
Confidence            67775 45555555556666 67888999999877777765 5799999999986    899999999999988766544


Q ss_pred             H--HHhCCcEEEEecCCC
Q psy17798         89 I--LEGEGFNVLGSNPGQ  104 (110)
Q Consensus        89 ~--l~~~g~~v~~v~~~~  104 (110)
                      .  ++..|.+++.++++.
T Consensus       124 ~~~~~~~g~~~~~~~~~~  141 (402)
T cd00378         124 FTKVSASGKLFESVPYGV  141 (402)
T ss_pred             cccccccceeEEEecCCc
Confidence            3  455788777777653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=98.95  E-value=1.3e-08  Score=74.72  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +....+.++++|+.+++++++++ +.+++++++|++++.++.++.    ++||+|+++..+|++... ...+++.|++++
T Consensus        37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~----~~Gd~Vlv~~~~~~~~~~-~~~~~~~g~~v~  111 (401)
T PLN02409         37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL----SPGDKVVSFRIGQFSLLW-IDQMQRLNFDVD  111 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC----CCCCEEEEeCCCchhHHH-HHHHHHcCCceE
Confidence            34567789999999999999975 568999999999998888765    899999999988987652 233467899999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .++.+.++
T Consensus       112 ~v~~~~~~  119 (401)
T PLN02409        112 VVESPWGQ  119 (401)
T ss_pred             EEECCCCC
Confidence            99987643

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=98.93  E-value=4.6e-09  Score=77.52  Aligned_cols=75  Identities=19%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhC--CC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLIN--CD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~--~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..++|+.++++++  .+ +++|++|+|+++++.++++++.    ++||.|++.+..|+.   ....++..|++++.+|+
T Consensus       122 g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~---~~~~~~~~g~~~~~v~~  194 (431)
T PRK15481        122 VSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLS---SINMLRYAGFSASPVSV  194 (431)
T ss_pred             CCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHH---HHHHHHHcCCeEEeecc
Confidence            45789999999987  33 5699999999999999999887    899999975544444   44455668999999999


Q ss_pred             CCCcc
Q psy17798        103 GQGGN  107 (110)
Q Consensus       103 ~~~G~  107 (110)
                      +++|.
T Consensus       195 ~~~g~  199 (431)
T PRK15481        195 DAEGM  199 (431)
T ss_pred             CCCCC
Confidence            87763

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=98.93  E-value=2.5e-09  Score=78.39  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      +++++ .+..+....+.+++ +|+.+++++|+++++|++++| |+|+..++.++.    ++||+|+++..+|+++...+.
T Consensus        56 ~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sg-t~al~~~l~~l~----~~gd~Vl~~~~~~~~~~~~~~  129 (416)
T PRK00011         56 GYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSG-SQANAAVYFALL----KPGDTILGMDLAHGGHLTHGS  129 (416)
T ss_pred             CCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecCCc-hHHHHHHHHHhc----CCCCEEEEeccccCCcccccc
Confidence            56665 45555555666766 899999999998877877765 679999998886    899999999999987654432


Q ss_pred             HH--HhCCcEEEEecCCC-Ccccc
Q psy17798         89 IL--EGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        89 ~l--~~~g~~v~~v~~~~-~G~~~  109 (110)
                      ..  ...|++++.+|++. ++.+|
T Consensus       130 ~~~~~~~g~~~~~~~~~~~~~~~d  153 (416)
T PRK00011        130 PVNFSGKLYNVVSYGVDEETGLID  153 (416)
T ss_pred             ccccccceeeEeecCcCcccCCcC
Confidence            22  34578888888874 35443

>PRK07683 aminotransferase A; Validated

Probab=98.93  E-value=8.2e-09  Score=75.21  Aligned_cols=76  Identities=21%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ....++|+++|++++      ++++ +|++|+|+++|+.++++++.    ++||+|+++...|+.+...+   +..|+++
T Consensus        65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~  137 (387)
T PRK07683         65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL----EPGTEVILPAPIYPGYEPII---RLCGAKP  137 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC----CCCCEEEEcCCCccchHHHH---HHcCCEE
Confidence            456789999999883      4788 99999999999999999876    79999999877777655444   4579999


Q ss_pred             EEecCCCCcc
Q psy17798         98 LGSNPGQGGN  107 (110)
Q Consensus        98 ~~v~~~~~G~  107 (110)
                      +.+|++++|.
T Consensus       138 ~~~~~~~~~~  147 (387)
T PRK07683        138 VFIDTRSTGF  147 (387)
T ss_pred             EEeecCcccC
Confidence            9999987654

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=98.92  E-value=4.8e-09  Score=78.46  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         25 KAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      .+..++|++||++++        +++++|++|+|+++++.+++.++.    ++||.|+++...|+.+...+..  ..|++
T Consensus        86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~  159 (468)
T PLN02450         86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKW--RTGVE  159 (468)
T ss_pred             CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhh--cCCcE
Confidence            467789999999985        588999999999999999999987    8999999887777776554321  36999


Q ss_pred             EEEecCCC-Cc
Q psy17798         97 VLGSNPGQ-GG  106 (110)
Q Consensus        97 v~~v~~~~-~G  106 (110)
                      ++.+|+++ +|
T Consensus       160 ~v~v~~~~~~~  170 (468)
T PLN02450        160 IVPIHCSSSNG  170 (468)
T ss_pred             EEEEecCCccC
Confidence            99999873 44

>PRK05942 aspartate aminotransferase; Provisional

Probab=98.92  E-value=5.7e-09  Score=76.18  Aligned_cols=74  Identities=14%  Similarity=0.062  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+.+++|+++|+++    +  ++++ +|++|+|+++++.+++.++.    ++||+|+++...||.+...+   +..|+++
T Consensus        73 ~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~  145 (394)
T PRK05942         73 EGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV----NPGDVVLVPSPAYPAHFRGP---LIAGAQI  145 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCEE
Confidence            35678999999988    4  4677 48999999999999998876    89999999888888776554   3479999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++.+
T Consensus       146 ~~v~~~~~  153 (394)
T PRK05942        146 YPIILKPE  153 (394)
T ss_pred             EEeecCCc
Confidence            99999854

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.91  E-value=5.6e-09  Score=76.65  Aligned_cols=74  Identities=20%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHhC------CCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         24 EKAVEDARQEIATLIN------CDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~------~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      .+++.++|++||+++.      .++++ |++|+|+++|+..++.++.    .+||+|++++..||++.....   -.|++
T Consensus        64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~----~pGDeVlip~P~Y~~y~~~~~---~~gg~  136 (393)
T COG0436          64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL----NPGDEVLIPDPGYPSYEAAVK---LAGGK  136 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc----CCCCEEEEeCCCCcCHHHHHH---hcCCE
Confidence            4578899999998873      45655 9999999999999999988    899999999999999877654   36999


Q ss_pred             EEEecCCC
Q psy17798         97 VLGSNPGQ  104 (110)
Q Consensus        97 v~~v~~~~  104 (110)
                      ++.+|++.
T Consensus       137 ~v~v~l~~  144 (393)
T COG0436         137 PVPVPLDE  144 (393)
T ss_pred             EEEEeCCc
Confidence            99999863

>PRK06108 aspartate aminotransferase; Provisional

Probab=98.91  E-value=7.5e-09  Score=74.85  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+.+++|+++|+++    +  +++++|++|+|+++++.+++.++.    ++||.|+++...|+.+...+   +..|++++
T Consensus        61 ~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~  133 (382)
T PRK06108         61 LGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----GPGDEVVAVTPLWPNLVAAP---KILGARVV  133 (382)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCccchHHHH---HHCCCEEE
Confidence            45678899999876    5  688999999999999999999886    79999999888888766544   55799999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|++.
T Consensus       134 ~v~~~~  139 (382)
T PRK06108        134 CVPLDF  139 (382)
T ss_pred             EeeCCC
Confidence            999974

>PLN02656 tyrosine transaminase

Probab=98.91  E-value=7.3e-09  Score=76.08  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|++++++++      +++++|++|+|+++|+.+++.++.    ++||+|++++..|+.+....   +..|++++
T Consensus        73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~  145 (409)
T PLN02656         73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA----RPGANILLPRPGFPIYELCA---AFRHLEVR  145 (409)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh----CCCCeEEEeCCCCCcHHHHH---HHcCCEEE
Confidence            466789999999984      578999999999999999999886    89999999998888765443   34699999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|+++
T Consensus       146 ~i~~~~  151 (409)
T PLN02656        146 YVDLLP  151 (409)
T ss_pred             EEeCCC
Confidence            999863

>PRK08912 hypothetical protein; Provisional

Probab=98.91  E-value=9.5e-09  Score=74.74  Aligned_cols=73  Identities=25%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++++++    +  ++++ +|++|+|+++++..++.++.    ++||+|+++...|+.+...+   +..|+++
T Consensus        63 ~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~  135 (387)
T PRK08912         63 MGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV----EPGDEVVLFQPLYDAYLPLI---RRAGGVP  135 (387)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHH---HHcCCEE
Confidence            34678999999876    3  5787 99999999999999998876    79999999887777665443   5679999


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      +.+|+++
T Consensus       136 ~~~~~~~  142 (387)
T PRK08912        136 RLVRLEP  142 (387)
T ss_pred             EEEecCc
Confidence            9999875

>PRK06290 aspartate aminotransferase; Provisional

Probab=98.90  E-value=1e-08  Score=75.47  Aligned_cols=75  Identities=12%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHh----C---CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         25 KAVEDARQEIATLI----N---CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~---~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      .+..++|+++|+++    |   ++++ +|++|+|+++++..++.++.    ++||.|++....|+.+....   +..|++
T Consensus        81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~  153 (410)
T PRK06290         81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI----NPGDVTLMTVPGYPVTGTHT---KYYGGE  153 (410)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC----CCCCEEEEeCCCCccHHHHH---HHcCCE
Confidence            35679999999987    3   6676 79999999999999999887    89999998777776655433   557999


Q ss_pred             EEEecCCCCc
Q psy17798         97 VLGSNPGQGG  106 (110)
Q Consensus        97 v~~v~~~~~G  106 (110)
                      ++.+|+++++
T Consensus       154 v~~v~~~~~~  163 (410)
T PRK06290        154 VYNLPLLEEN  163 (410)
T ss_pred             EEEEecCCCc
Confidence            9999998653

>PRK07568 aspartate aminotransferase; Provisional

Probab=98.90  E-value=1e-08  Score=74.65  Aligned_cols=76  Identities=14%  Similarity=0.306  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHh-----CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         25 KAVEDARQEIATLI-----NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        25 ~~~~~~R~~la~~l-----~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      .+..++|+++++++     ++++++|++|+|+++++++++.++.    ++||+|+++...|+.+..   .++..|++++.
T Consensus        66 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~  138 (397)
T PRK07568         66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC----DPGDEILVPEPFYANYNG---FATSAGVKIVP  138 (397)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc----CCCCEEEEecCCCccHHH---HHHHcCCEEEE
Confidence            46788999999998     4789999999999999999998875    799999998766665443   23567999999


Q ss_pred             ecCC-CCcc
Q psy17798        100 SNPG-QGGN  107 (110)
Q Consensus       100 v~~~-~~G~  107 (110)
                      +|++ ++|.
T Consensus       139 v~~~~~~g~  147 (397)
T PRK07568        139 VTTKIEEGF  147 (397)
T ss_pred             eecCcccCC
Confidence            9987 3453

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=98.89  E-value=1e-08  Score=75.13  Aligned_cols=73  Identities=14%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhCC------CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLINC------DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~------~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ....++|+++|++++.      ++++|++|+|+|+|+.+++.++.    ++||+|+++..+|+.+...   .+..|++++
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~  145 (403)
T TIGR01265        73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA----NPGANILVPRPGFPLYDTR---AAFSGLEVR  145 (403)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHH---HHHcCCEEE
Confidence            4577899999999974      67899999999999999999987    7999999988887765443   356799999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+++++
T Consensus       146 ~~~~~~  151 (403)
T TIGR01265       146 LYDLLP  151 (403)
T ss_pred             EecCCc
Confidence            998754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK08363 alanine aminotransferase; Validated

Probab=98.88  E-value=1.2e-08  Score=74.50  Aligned_cols=75  Identities=11%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ....++|+++|+++      ++++++|++|+|+++|+.+++.++.    ++||+|+++...|+.+....   +..|.+++
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~v  142 (398)
T PRK08363         70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----DPGDEILIPGPSYPPYTGLV---KFYGGVPV  142 (398)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCEEE
Confidence            45678999999987      3588999999999999999999886    89999999888888776544   45688877


Q ss_pred             Ee-cCCCCc
Q psy17798         99 GS-NPGQGG  106 (110)
Q Consensus        99 ~v-~~~~~G  106 (110)
                      .+ +++++|
T Consensus       143 ~~~~~~~~~  151 (398)
T PRK08363        143 EYRTIEEEG  151 (398)
T ss_pred             EeccccccC
Confidence            77 565555

>PLN00175 aminotransferase family protein; Provisional

Probab=98.88  E-value=1.3e-08  Score=74.99  Aligned_cols=74  Identities=22%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|++++++++      ++++ +|++|+|+++|+.+++.++.    ++||+|++.+..|+.+...   ++..|+++
T Consensus        91 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~---~~~~g~~~  163 (413)
T PLN00175         91 FGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI----NPGDEVILFAPFYDSYEAT---LSMAGAKI  163 (413)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHH---HHHcCCEE
Confidence            357789999998874      5676 79999999999999999876    8999999887777665544   35579999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       164 ~~v~~~~~  171 (413)
T PLN00175        164 KTVTLRPP  171 (413)
T ss_pred             EEEECCcc
Confidence            99999753

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=98.88  E-value=6.8e-09  Score=77.31  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         24 EKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ..+..++|+++|++++        ++|++|++|+|+++++.+++.++.    .+||.|+++...|+.+...+.  .+.|+
T Consensus        94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~--~~~g~  167 (447)
T PLN02607         94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLR--WRTGV  167 (447)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHH--hcCCc
Confidence            3478899999999985        578999999999999999999887    899999999888888765442  13689


Q ss_pred             EEEEecCCCC
Q psy17798         96 NVLGSNPGQG  105 (110)
Q Consensus        96 ~v~~v~~~~~  105 (110)
                      +++.|+++++
T Consensus       168 ~vv~v~~~~~  177 (447)
T PLN02607        168 KIVPIHCDSS  177 (447)
T ss_pred             EEEEEeCCCC
Confidence            9999998753

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=98.88  E-value=1.7e-08  Score=72.63  Aligned_cols=76  Identities=13%  Similarity=0.082  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCC---CEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKK---KHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g---~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      .+..++|+++++++    |  ++++ +|++|+|++++++.++.++.    ++|   |+|+++...|+.+...+   +..|
T Consensus        36 ~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~----~~g~~~d~Vl~~~p~y~~~~~~~---~~~g  108 (350)
T TIGR03537        36 LGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI----DPEEDRRRVIFGTPGYPVYERGA---LFAG  108 (350)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc----CCCCCCceEEEcCCCCcchHHHH---HhcC
Confidence            35678999999987    5  5787 89999999999999998876    565   69998887777766555   4579


Q ss_pred             cEEEEecCCC-Ccc
Q psy17798         95 FNVLGSNPGQ-GGN  107 (110)
Q Consensus        95 ~~v~~v~~~~-~G~  107 (110)
                      ++++.+|+++ +|.
T Consensus       109 ~~~~~v~~~~~~~~  122 (350)
T TIGR03537       109 GEPTAVKLKKEDGF  122 (350)
T ss_pred             CEEEEcccCcccCC
Confidence            9999999974 453

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07550 hypothetical protein; Provisional

Probab=98.88  E-value=1.5e-08  Score=73.63  Aligned_cols=73  Identities=16%  Similarity=0.090  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+.+++|++++++++      .++++|++|+|+++++.+++.++.    ++||+|++....|+.+..   .++..|++++
T Consensus        67 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~  139 (386)
T PRK07550         67 EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA----GAGDEVILPLPWYFNHKM---WLDMLGIRPV  139 (386)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc----CCCCEEEEcCCCCcchHH---HHHhcCCEEE
Confidence            357788999998874      578999999999999999999886    799999987766666544   3356899999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+++++
T Consensus       140 ~v~~~~  145 (386)
T PRK07550        140 YLPCDE  145 (386)
T ss_pred             EEecCC
Confidence            999985

>PRK08175 aminotransferase; Validated

Probab=98.87  E-value=1.2e-08  Score=74.47  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +..++|++++++++      ++++ +|++|+|+++++++++.++.    ++||+|+++...|+.+...+   +..|++++
T Consensus        68 G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~  140 (395)
T PRK08175         68 GIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL----DHGDTVLVPNPSYPIHIYGA---VIAGAQVR  140 (395)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HHcCCeEE
Confidence            46789999999872      5676 79999999999999998876    89999999888888776655   34699999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       141 ~v~~~~~~  148 (395)
T PRK08175        141 SVPLVEGV  148 (395)
T ss_pred             EEecccCC
Confidence            99998654

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=98.87  E-value=1.6e-08  Score=73.42  Aligned_cols=75  Identities=15%  Similarity=0.049  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +++++|+++|++++      ++++ +|++|+|+++++++++.++.    ++||+|++++..|+.+....   +..|++++
T Consensus        70 G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~----~~gd~Vl~~~P~y~~~~~~~---~~~g~~~~  142 (385)
T PRK09276         70 GMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV----NPGDVVLVPDPGYPVYKIGT---IFAGGEPY  142 (385)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC----CCCCEEEEcCCCCcChHHHH---HHcCCEEE
Confidence            56789999999883      4666 59999999999999999886    89999999887777665443   45799999


Q ss_pred             EecCCCC-cc
Q psy17798         99 GSNPGQG-GN  107 (110)
Q Consensus        99 ~v~~~~~-G~  107 (110)
                      .+|++.+ |.
T Consensus       143 ~v~~~~~~g~  152 (385)
T PRK09276        143 FMPLKEENGF  152 (385)
T ss_pred             EEecCCCCCC
Confidence            9999753 54

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=98.87  E-value=1.4e-08  Score=73.73  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-EEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         26 AVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKK-HVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        26 ~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      +..++|+++|++++        +++++|++|+|+++++..++.++.    .+|+ +|++....|+.+.   ..++..|++
T Consensus        67 G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~----~~g~~~Vlv~~P~y~~~~---~~~~~~g~~  139 (374)
T PRK02610         67 GHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC----LGGEGSILVAEPTFSMYG---ILAQTLGIP  139 (374)
T ss_pred             chHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc----CCCCCeEEEcCCChHHHH---HHHHHcCCE
Confidence            46789999999997        789999999999999998877765    4665 7887555554444   444667999


Q ss_pred             EEEecCCCC
Q psy17798         97 VLGSNPGQG  105 (110)
Q Consensus        97 v~~v~~~~~  105 (110)
                      ++.+|++++
T Consensus       140 ~~~~~~~~~  148 (374)
T PRK02610        140 VVRVGRDPE  148 (374)
T ss_pred             EEEecCCcc
Confidence            999998753

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=98.86  E-value=1.3e-08  Score=73.87  Aligned_cols=74  Identities=14%  Similarity=0.044  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|++++      ++++ +|++|+|++++++++++++.    ++||+|++....|+.+...+   +..|+++
T Consensus        67 ~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~---~~~G~~v  139 (383)
T TIGR03540        67 EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV----NPGDIVLVPDPGYPVYRIGT---LFAGGEP  139 (383)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC----CCCCEEEEeCCCCcchHHHH---HhcCCEE
Confidence            356789999999874      3565 69999999999999999886    89999999888887766544   4579999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       140 ~~v~~~~~  147 (383)
T TIGR03540       140 YEMPLKEE  147 (383)
T ss_pred             EEEecCcc
Confidence            99999854

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06348 aspartate aminotransferase; Provisional

Probab=98.86  E-value=1.7e-08  Score=73.50  Aligned_cols=71  Identities=18%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      +..++|+++|+++      ++++++|++|+|+++|+.+++.++.    ++||+|++....|+.+...+   +..|.+++.
T Consensus        67 G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~---~~~g~~~~~  139 (384)
T PRK06348         67 GDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL----DPGDEVIIHEPYFTPYKDQI---EMVGGKPII  139 (384)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHH---HHcCCEEEE
Confidence            4568999999988      3689999999999999999999987    79999998776666655544   456889999


Q ss_pred             ecCC
Q psy17798        100 SNPG  103 (110)
Q Consensus       100 v~~~  103 (110)
                      +|++
T Consensus       140 ~~~~  143 (384)
T PRK06348        140 LETY  143 (384)
T ss_pred             ecCC
Confidence            9875

>PRK08636 aspartate aminotransferase; Provisional

Probab=98.85  E-value=4.5e-09  Score=76.92  Aligned_cols=73  Identities=21%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         24 EKAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..+..++|+++|+++    +  ++++ +|++|+|+++++.++++++.    ++||.|++.+..|+.+..   .++..|++
T Consensus        70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~---~~~~~g~~  142 (403)
T PRK08636         70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT----NPGDVAIVPDPAYPIHSQ---AFILAGGN  142 (403)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHH---HHHhcCCE
Confidence            356778999999987    4  5677 79999999999999999987    899999987666665544   44557999


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      ++.+|++
T Consensus       143 ~~~v~~~  149 (403)
T PRK08636        143 VHKMPLE  149 (403)
T ss_pred             EEEEecc
Confidence            9999885

>PRK05764 aspartate aminotransferase; Provisional

Probab=98.85  E-value=2e-08  Score=73.05  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+.+|+++      ++++++|++|+|+++++..++.++.    ++||+|+++...|+.+....   +..|++++.
T Consensus        69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~~  141 (393)
T PRK05764         69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL----DPGDEVIIPAPYWVSYPEMV---KLAGGVPVF  141 (393)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc----CCCCEEEecCCCCcchHHHH---HHcCCEEEE
Confidence            4678999999987      3578999999999999999999876    79999999988888765543   456999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       142 ~~~~~~  147 (393)
T PRK05764        142 VPTGEE  147 (393)
T ss_pred             EecCcc
Confidence            999743

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.84  E-value=3.5e-08  Score=71.95  Aligned_cols=74  Identities=16%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +...++++.+|+++|++  ++++|+|+|+|+++++.++.   +++||+||++..+|+++..++   ...|++++.+++++
T Consensus        33 ~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~---~~~Gd~Viv~~~~~~~~~~~~---~~~G~~~v~vd~~~  104 (379)
T PRK11658         33 PKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALG---IGPGDEVITPSLTWVSTLNMI---VLLGATPVMVDVDR  104 (379)
T ss_pred             HhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcC---CCCCCEEEECCCcHHHHHHHH---HHcCCEEEEEecCC
Confidence            35789999999999985  68899999999999999883   279999999999999987655   34799999999987


Q ss_pred             Cc
Q psy17798        105 GG  106 (110)
Q Consensus       105 ~G  106 (110)
                      ++
T Consensus       105 ~~  106 (379)
T PRK11658        105 DT  106 (379)
T ss_pred             Cc
Confidence            64

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.84  E-value=1.6e-08  Score=74.88  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ..+.++|+++|++++      +++++|++|+|+++|+.+++.++.    ++||+|+++...|+.+....   ...|++++
T Consensus        94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~----~~Gd~Vlv~~P~y~~y~~~~---~~~g~~~~  166 (430)
T PLN00145         94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA----QPGANILLPRPGYPLYEARA---VFSGLEVR  166 (430)
T ss_pred             ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHH---HHcCCEEE
Confidence            467899999999984      478999999999999999999986    79999999888888765433   34688998


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+++.
T Consensus       167 ~~~~~  171 (430)
T PLN00145        167 HFDLL  171 (430)
T ss_pred             EeeCC
Confidence            88864

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.84  E-value=2.6e-08  Score=73.99  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      |..++...+..+++++.+|++.++..  .++|+|+++|+++++.++.    ++||+||++..+|++....+.. +++.|+
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~~~--av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi  129 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGGVG--AIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGI  129 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCe
Confidence            44445555779999999999999764  6999999999999998885    7999999999999987766544 467899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++++++++
T Consensus       130 ~v~~vd~~  137 (433)
T PRK08134        130 ETTFVKPG  137 (433)
T ss_pred             EEEEECCC
Confidence            99999875

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=98.83  E-value=1.4e-08  Score=74.30  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhC-----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         25 KAVEDARQEIATLIN-----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        25 ~~~~~~R~~la~~l~-----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ....++|+++|++++     +++++|++|+|+++++.+++.++.    ++||+|+++...|+.+.   ..++..|++++.
T Consensus        73 ~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~v~i~~P~y~~~~---~~~~~~g~~v~~  145 (401)
T TIGR01264        73 VGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA----NAGQNILVPRPGFPLYE---TLAESMGIEVKL  145 (401)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC----CCCCEEEEeCCCChhHH---HHHHHcCCEEEE
Confidence            356789999999997     688999999999999999999887    79999998766555443   344667999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      ++++.
T Consensus       146 ~~~~~  150 (401)
T TIGR01264       146 YNLLP  150 (401)
T ss_pred             eecCC
Confidence            98864

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.83  E-value=3e-08  Score=71.14  Aligned_cols=73  Identities=10%  Similarity=0.013  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhC---CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLIN---CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~---~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ...++|+++|++++   +++++|++|+|+++++.++++++        ++|++.+   |++......++..|++++.+|+
T Consensus        57 ~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~--------d~v~v~~---P~y~~~~~~~~~~g~~~~~v~~  125 (335)
T PRK14808         57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--------DRSVFFP---PTYSCYRIFAKAVGAKFLEVPL  125 (335)
T ss_pred             ChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh--------CcEEECC---CCHHHHHHHHHHcCCeEEEecC
Confidence            35789999999998   88999999999999999998764        3577655   5544444444667999999999


Q ss_pred             CCCcccc
Q psy17798        103 GQGGNFL  109 (110)
Q Consensus       103 ~~~G~~~  109 (110)
                      ++++.++
T Consensus       126 ~~~~~~~  132 (335)
T PRK14808        126 TKDLRIP  132 (335)
T ss_pred             CCcCCCC
Confidence            8776553

>PRK06207 aspartate aminotransferase; Provisional

Probab=98.82  E-value=4.1e-08  Score=72.08  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHh----C--CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|+++    |  +++ ++|++|+|+++++.++++++.    ++||+|++....|+.+..   .++..|+++
T Consensus        78 ~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~---~~~~~g~~v  150 (405)
T PRK06207         78 RGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV----ARGDKVAIVQPDYFANRK---LVEFFEGEM  150 (405)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhHHH---HHHHcCCEE
Confidence            34567888887776    6  467 899999999999999999887    899999987777766553   345679999


Q ss_pred             EEecCC
Q psy17798         98 LGSNPG  103 (110)
Q Consensus        98 ~~v~~~  103 (110)
                      +.+|++
T Consensus       151 ~~v~~~  156 (405)
T PRK06207        151 VPVQLD  156 (405)
T ss_pred             EEEecc
Confidence            999986

>PRK08068 transaminase; Reviewed

Probab=98.82  E-value=2.6e-08  Score=72.58  Aligned_cols=74  Identities=8%  Similarity=-0.006  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|+++    +  ++++ +|++|+|+++++.+++.++.    ++||+|++....|+.+....   +..|+++
T Consensus        70 ~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~---~~~g~~~  142 (389)
T PRK08068         70 RGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM----NPGDTILVPDPGYPDYLSGV---ALARAQF  142 (389)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHH---HhcCCEE
Confidence            45678999999987    4  6787 89999999999999988876    89999998777776665443   4579999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       143 ~~i~~~~~  150 (389)
T PRK08068        143 ETMPLIAE  150 (389)
T ss_pred             EEeecccc
Confidence            99999854

>PLN02368 alanine transaminase

Probab=98.82  E-value=1.7e-08  Score=74.38  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         24 EKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ..++.++|++||+++    |  +++++|++|+|+++++.+++.++..   ++||.|++....||.+....   +..|+++
T Consensus       106 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~pGd~Vli~~P~Y~~y~~~~---~~~g~~~  179 (407)
T PLN02368        106 SRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATI---SLLGGTL  179 (407)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC---CCCCEEEEeCCCCccHHHHH---HHcCCEE
Confidence            346789999999988    4  5789999999999999999988751   58999999887777776544   4578999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       180 v~v~~~~~  187 (407)
T PLN02368        180 VPYYLEES  187 (407)
T ss_pred             EEEecccc
Confidence            99998753

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.81  E-value=7.2e-08  Score=70.10  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHH-HhCCcEEEE
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRIL-EGEGFNVLG   99 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~   99 (110)
                      ..+..+++++.+++++++++++++|+++++.+.+.++.++..   .+  ||+|++++.+|+++..+|..+ +..|++++.
T Consensus        62 ~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~---~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~  138 (398)
T cd00613          62 RLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIR---AYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVE  138 (398)
T ss_pred             HHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHh---cccCCCEEEEcCccCcchHHHHHHhcccCCcEEEE
Confidence            446778899999999999888898888766555544444432   44  999999999999999998877 456799999


Q ss_pred             ecCCCCccc
Q psy17798        100 SNPGQGGNF  108 (110)
Q Consensus       100 v~~~~~G~~  108 (110)
                      +|+++++.+
T Consensus       139 v~~~~~~~~  147 (398)
T cd00613         139 VPSDEGGTV  147 (398)
T ss_pred             eccCCCCCc
Confidence            998765543

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK08637 hypothetical protein; Provisional

Probab=98.81  E-value=1.5e-08  Score=73.90  Aligned_cols=79  Identities=8%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-----CCC---CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH
Q psy17798         19 YGWESEKAVEDARQEIATLIN-----CDP---KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~-----~~~---~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l   90 (110)
                      +++....+..++|+.+++++.     .++   ++|++|+|+++++.+++.++.    ++||+|++....|+.+.....  
T Consensus        38 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~--  111 (388)
T PRK08637         38 FPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV----DQGDTVLLPDHNWGNYKLTFN--  111 (388)
T ss_pred             cCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHH--
Confidence            344456678899999998773     232   579999999999999999887    899999986666666554322  


Q ss_pred             HhCCcEEEEecCC
Q psy17798         91 EGEGFNVLGSNPG  103 (110)
Q Consensus        91 ~~~g~~v~~v~~~  103 (110)
                      ...|++++.+|++
T Consensus       112 ~~~g~~vv~v~~~  124 (388)
T PRK08637        112 TRRGAEIVTYPIF  124 (388)
T ss_pred             HhcCCEEEEeccc
Confidence            2369999999983

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=98.80  E-value=2.7e-08  Score=72.58  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHh--------CCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCE--EEEcCCCChhHHHHHHHHHhC
Q psy17798         25 KAVEDARQEIATLI--------NCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKH--VITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        25 ~~~~~~R~~la~~l--------~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~--vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      .+..++|+++|+++        +++++ +|++|+|+++++.++++++.    ++||+  |+++...|+.+..   ..+..
T Consensus        64 ~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~----~~gd~~~vlv~~P~y~~~~~---~~~~~  136 (393)
T TIGR03538        64 KGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI----NPGQAPLVVMPNPFYQIYEG---AALLA  136 (393)
T ss_pred             CCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc----CCCCcceEEecCCCCcchHH---HHHhc
Confidence            35678999999998        36775 79999999999999999887    78886  8876655655543   33567


Q ss_pred             CcEEEEecCCCC
Q psy17798         94 GFNVLGSNPGQG  105 (110)
Q Consensus        94 g~~v~~v~~~~~  105 (110)
                      |++++.+|++++
T Consensus       137 g~~~~~v~~~~~  148 (393)
T TIGR03538       137 GAEPYFLNCTAE  148 (393)
T ss_pred             CCeEEEeecccc
Confidence            999999999754

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.80  E-value=2.7e-08  Score=73.16  Aligned_cols=72  Identities=15%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++      ++++++|++|+|+++++.++++++.    ++||.|++....|+.+....   +..|++++
T Consensus        74 ~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~v~v~~P~y~~~~~~~---~~~g~~~~  146 (409)
T PLN00143         74 GGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA----RPEANILLPRPGFPDVETYA---IFHHLEIR  146 (409)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc----CCCCEEEEcCCCCcCHHHHH---HHcCCEEE
Confidence            35678999999998      3688999999999999999999987    89999998887777765443   45799999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .++++
T Consensus       147 ~~~~~  151 (409)
T PLN00143        147 HFDLL  151 (409)
T ss_pred             EEecc
Confidence            99985

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=98.80  E-value=3.1e-08  Score=71.40  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+++|+++++++++|++|+|+++++.++++++     .+|+.|+ ..   |++......++..|++++.+|+++
T Consensus        56 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-----~~g~viv-~~---P~y~~~~~~~~~~g~~~~~v~~~~  125 (356)
T PRK08056         56 EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-----KPRRAMI-VT---PGFAEYRRALQQVGCEIRRYSLRE  125 (356)
T ss_pred             cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-----CCCCEEE-eC---CCcHHHHHHHHHcCCeEEEEeccc
Confidence            3689999999999999999999999999999998875     3566544 33   444333334466899999999874

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=98.79  E-value=2.6e-08  Score=71.87  Aligned_cols=71  Identities=21%  Similarity=0.143  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+++|+++++++++|++|+|++++++++++++.     + +.|++....|+.+   ...++..|++++.+|++++
T Consensus        55 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-----~-~~v~i~~P~y~~~---~~~~~~~g~~~~~~~~~~~  125 (354)
T PRK06358         55 DYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-----P-KKVLILAPTFAEY---ERALKAFDAEIEYAELTEE  125 (354)
T ss_pred             cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-----C-CcEEEecCChHHH---HHHHHHcCCeeEEEeCccc
Confidence            36799999999999999999999999999999988753     3 4677655555544   3444667999999998754

>PLN02231 alanine transaminase

Probab=98.79  E-value=1.9e-08  Score=76.42  Aligned_cols=79  Identities=18%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         21 WESEKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +....++.++|+.||+++    |  +++++|++|+|+++|+.++++++..   .+||.|++....||.+...+   +..|
T Consensus       164 Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~---~~gd~Vli~~P~Y~~y~~~~---~~~g  237 (534)
T PLN02231        164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEKDGILCPIPQYPLYSASI---ALHG  237 (534)
T ss_pred             cCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc---CCCCEEEEeCCCChhHHHHH---HHcC
Confidence            445678999999999988    3  5789999999999999999998861   37999998777777665544   5579


Q ss_pred             cEEEEecCCCC
Q psy17798         95 FNVLGSNPGQG  105 (110)
Q Consensus        95 ~~v~~v~~~~~  105 (110)
                      .+++.+|++++
T Consensus       238 ~~~v~~~l~~~  248 (534)
T PLN02231        238 GTLVPYYLDEA  248 (534)
T ss_pred             CEEEEEecCcc
Confidence            99999999864

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=98.79  E-value=3.1e-08  Score=70.84  Aligned_cols=72  Identities=8%  Similarity=-0.016  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+++|++++.++++|++|+|+++++.+++. +.    .+|+ |++.+   |++......++..|++++.+|+++.
T Consensus        41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~~-vv~~~---P~y~~y~~~~~~~G~~v~~vp~~~~  111 (332)
T PRK06425         41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVGN-IIIVE---PNFNEYKGYAFTHGIRISALPFNLI  111 (332)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCCc-EEEeC---CChHHHHHHHHHcCCeEEEEeCCcc
Confidence            46899999999999999999999999999999986 33    5665 55444   5655555555778999999999754


Q ss_pred             c
Q psy17798        106 G  106 (110)
Q Consensus       106 G  106 (110)
                      +
T Consensus       112 ~  112 (332)
T PRK06425        112 N  112 (332)
T ss_pred             c
Confidence            3

>PRK07682 hypothetical protein; Validated

Probab=98.78  E-value=5.2e-08  Score=70.64  Aligned_cols=73  Identities=22%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ....++|+++|++++      ++++ +|++|+|+++|+.++++++.    ++||+|++....|+.+....   +..|.++
T Consensus        57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~  129 (378)
T PRK07682         57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII----NPGDEVLIVEPSFVSYAPLV---TLAGGVP  129 (378)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC----CCCCEEEEeCCCchhhHHHH---HHcCCEE
Confidence            457789999999884      4565 79999999999999999886    89999999888887655433   4468888


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      +.++++.
T Consensus       130 ~~~~~~~  136 (378)
T PRK07682        130 VPVATTL  136 (378)
T ss_pred             EEeecCC
Confidence            8888763

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=98.78  E-value=8.6e-08  Score=68.44  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++++.++++++.  +++++++|+|+|++.++.++..   ++||+|+++..+|+++..++.   ..|++++++++++
T Consensus        18 ~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~---~~gd~vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~   89 (352)
T cd00616          18 PKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGI---GPGDEVIVPSFTFVATANAIL---LLGATPVFVDIDP   89 (352)
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCC---CCCCEEEeCCcchHHHHHHHH---HcCCeEEEEecCC
Confidence            3677899999999996  4789999999999999998842   789999999999999877664   4699999999986


Q ss_pred             -Cccc
Q psy17798        105 -GGNF  108 (110)
Q Consensus       105 -~G~~  108 (110)
                       ++.+
T Consensus        90 ~~~~~   94 (352)
T cd00616          90 DTYNI   94 (352)
T ss_pred             CcCCc
Confidence             4543

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=98.78  E-value=9.7e-08  Score=68.88  Aligned_cols=81  Identities=11%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         24 EKAVEDARQEIATLINCDP--KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~--~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .+.++++|+.+++++|+++  +.|++|+|+|++++.++.++.    .+|++|++....+.+.. .....+..|++++.+|
T Consensus        36 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~----~~~~~vlv~~~~~~~~~-~~~~~~~~g~~~~~i~  110 (368)
T PRK13479         36 NALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV----PRDGKVLVPDNGAYGAR-IAQIAEYLGIAHVVLD  110 (368)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc----CCCCeEEEEeCCchHHH-HHHHHHHcCCcEEEEE
Confidence            3589999999999999964  568899999999999999987    67777776543332221 1233467899999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      +++++.+|
T Consensus       111 ~~~~~~~d  118 (368)
T PRK13479        111 TGEDEPPD  118 (368)
T ss_pred             CCCCCCCC
Confidence            98665443

>PRK05839 hypothetical protein; Provisional

Probab=98.77  E-value=5.5e-08  Score=70.66  Aligned_cols=76  Identities=13%  Similarity=-0.026  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++    +  +++++|++|+|+++++..++..+..  -++||.|++....|+.+...   ++..|++++
T Consensus        60 ~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~--~~~gd~vlv~~P~y~~~~~~---~~~~g~~v~  134 (374)
T PRK05839         60 AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF--DKQNPTIAYPNPFYQIYEGA---AIASRAKVL  134 (374)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc--CCCCCEEEECCCCchhhHHH---HHhcCCEEE
Confidence            35678889988776    4  5899999999999999998887641  14789999765555555444   456799999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|++++
T Consensus       135 ~v~~~~~  141 (374)
T PRK05839        135 LMPLTKE  141 (374)
T ss_pred             Eeecccc
Confidence            9999854

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.77  E-value=8.6e-08  Score=77.11  Aligned_cols=81  Identities=15%  Similarity=0.167  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      ....+.+.+.+..+|+++|++++++.++.|+|.+.+.++.++.+   +  ++++|++++.+||++..+|+.+ +..|++|
T Consensus       144 QG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~---~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV  220 (993)
T PLN02414        144 QGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNI---LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEV  220 (993)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhc---ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEE
Confidence            34557799999999999999999999999999999999888763   4  4478999999999999999887 6789999


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      +.+|++.
T Consensus       221 ~~v~~~~  227 (993)
T PLN02414        221 VVADEKD  227 (993)
T ss_pred             EEecchh
Confidence            9999864

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.76  E-value=1.2e-07  Score=69.21  Aligned_cols=73  Identities=10%  Similarity=0.031  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..+++.+.+++++++  +++++|+|+|+|+++++.++.   +++||+|+++...|+++..++.   ..|++++.++++++
T Consensus        32 ~~~~~e~~la~~~g~--~~~v~~~sgt~aL~~~l~al~---~~pGd~Viv~~~t~~~~~~~~~---~~G~~~v~vd~d~~  103 (376)
T TIGR02379        32 FSRRCETWLENRTGT--KKALLTPSCTAALEMAALLLD---IQPGDEVIMPSYTFVSTANAFV---LRGAKIVFVDIRPD  103 (376)
T ss_pred             HHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecCCC
Confidence            345666677777665  689999999999999998873   2899999999999999877664   46999999999976


Q ss_pred             c
Q psy17798        106 G  106 (110)
Q Consensus       106 G  106 (110)
                      +
T Consensus       104 ~  104 (376)
T TIGR02379       104 T  104 (376)
T ss_pred             c
Confidence            5

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.75  E-value=9.2e-08  Score=69.74  Aligned_cols=80  Identities=6%  Similarity=-0.024  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCC-CCcEEEeC-ChHHHHHHHHHHhHHhhccC-CCEEEEcCCCChhHHHHHHHH-HhCCc-E
Q psy17798         22 ESEKAVEDARQEIATLINCD-PKEIIFTS-GATESNNIAVKGVARFYKEK-KKHVITTQTEHKCVLDSCRIL-EGEGF-N   96 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~-~~~i~~t~-gat~a~~~i~~~l~~~~~~~-g~~vl~~~~e~ps~~~~~~~l-~~~g~-~   96 (110)
                      ...+.++++|+.++++++++ +++|+|++ |+|++++.++.++.    ++ ++.|+. ..||++....  .+ ++.|+ +
T Consensus        45 ~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~----~~~~~~vi~-~g~f~~~~~~--~~~~~~g~~~  117 (378)
T PRK03080         45 PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL----GARRVDHLA-WESFGSKWAT--DVVKQLKLED  117 (378)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC----CCCcceEEE-eCHHHHHHHH--HHHhhcCCCC
Confidence            56789999999999999984 56899885 99999999999985    54 455554 6899985432  23 45788 9


Q ss_pred             EEEecCCCCccc
Q psy17798         97 VLGSNPGQGGNF  108 (110)
Q Consensus        97 v~~v~~~~~G~~  108 (110)
                      ++.++.+.++.+
T Consensus       118 v~~~~~~~g~~~  129 (378)
T PRK03080        118 PRVLEADYGSLP  129 (378)
T ss_pred             ceEeccCCCCCC
Confidence            999988754443

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.75  E-value=6.1e-08  Score=69.92  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHh-------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLI-------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l-------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +..++|+++++++       ++++++|++|+|+++++..++..+.   .++||+|++.+..||++....   +..|++++
T Consensus        57 G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~---~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~  130 (357)
T TIGR03539        57 GTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG---LGPGDTVVIPELAYPTYEVGA---LLAGATPV  130 (357)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc---CCCCCEEEECCCCcHHHHHHH---HhcCCEEe
Confidence            4678899999988       4778999999999999999888773   179999999988888876554   34687777


Q ss_pred             Eec
Q psy17798         99 GSN  101 (110)
Q Consensus        99 ~v~  101 (110)
                      .++
T Consensus       131 ~v~  133 (357)
T TIGR03539       131 AAD  133 (357)
T ss_pred             ccC
Confidence            664

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd00609 AAT_like Aspartate aminotransferase family

Probab=98.75  E-value=4.5e-08  Score=69.20  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhCCC------CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         24 EKAVEDARQEIATLINCD------PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~------~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ...+.++|+.++++++..      ++++++++|+++++..++.++.    ++|++|+++...|+++...++   ..|+++
T Consensus        35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~---~~~~~~  107 (350)
T cd00609          35 DPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAAR---LAGAEV  107 (350)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHH---HCCCEE
Confidence            346778888999888754      7899999999999999999987    789999999999999877654   468999


Q ss_pred             EEecCCCCccc
Q psy17798         98 LGSNPGQGGNF  108 (110)
Q Consensus        98 ~~v~~~~~G~~  108 (110)
                      +.+|.++++..
T Consensus       108 ~~i~~~~~~~~  118 (350)
T cd00609         108 VPVPLDEEGGF  118 (350)
T ss_pred             EEEecccccCC
Confidence            99999877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=98.74  E-value=3.1e-08  Score=72.65  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE-
Q psy17798         24 EKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN-   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~-   96 (110)
                      ..+..++|+++|+++      +++|++|++|+|+++++.+++ .+.    .+||+|++.+..|+.+....   +..|.+ 
T Consensus        75 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~----~~gd~V~v~~P~Y~~~~~~~---~~~g~~~  146 (409)
T PRK07590         75 EQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF----GPDNTIAVTDPVYPVYVDTN---VMAGRTG  146 (409)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc----CCCCEEEEeCCCCcchHHHH---HHcCCcc
Confidence            346778999999986      578999999999999999864 333    79999998776666655444   445765 


Q ss_pred             ----------EEEecCCCC
Q psy17798         97 ----------VLGSNPGQG  105 (110)
Q Consensus        97 ----------v~~v~~~~~  105 (110)
                                ++.+|++++
T Consensus       147 ~~~~~~~~~~~~~v~~~~~  165 (409)
T PRK07590        147 EANEDGRYSGIVYLPCTAE  165 (409)
T ss_pred             cccccccccceeEeecccc
Confidence                      899999754

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=98.74  E-value=5.9e-08  Score=70.83  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhC------CC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLIN------CD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +.+++|++++++++      ++ +++|++|+|+++++++++.++.    .+||+|++....|+.+...+   +..|++++
T Consensus        68 g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~  140 (391)
T PRK07309         68 GLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL----EPGDKVLLPAPAYPGYEPIV---NLVGAEIV  140 (391)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHH---HHcCCEEE
Confidence            46789999999874      23 4789999999999999999876    79999998877777765433   55799999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       141 ~~~~~~~~  148 (391)
T PRK07309        141 EIDTTEND  148 (391)
T ss_pred             EEecCCcC
Confidence            99987654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=98.74  E-value=5.9e-08  Score=70.49  Aligned_cols=77  Identities=14%  Similarity=0.315  Sum_probs=59.0

Q ss_pred             hhhh-hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          4 YLTN-AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         4 ~~~~-~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      .++. ..+++++ .+..|.  .+...++|+.+|++++++  ++++++|+++|++.++.++.    ++||+|++++.+||+
T Consensus        64 ~~~~~~~~~~~s-~~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~~~~l~----~~gd~vi~~~~~~~s  134 (393)
T TIGR01822        64 ALDEHGFGMSSV-RFICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGLFETLL----GAEDAIISDALNHAS  134 (393)
T ss_pred             HHHHhCCCCCCc-CcccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHHHHHhC----CCCCEEEEeccccHH
Confidence            3444 2466665 344443  456789999999999973  56777888999999988875    899999999999999


Q ss_pred             HHHHHHH
Q psy17798         83 VLDSCRI   89 (110)
Q Consensus        83 ~~~~~~~   89 (110)
                      +...+..
T Consensus       135 ~~~~~~~  141 (393)
T TIGR01822       135 IIDGVRL  141 (393)
T ss_pred             HHHHHHh
Confidence            8876643

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=98.74  E-value=8.8e-08  Score=69.92  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHh----C---CCCC-cEEEeCChHHHHHHHHHHhHHhhccC---CCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         26 AVEDARQEIATLI----N---CDPK-EIIFTSGATESNNIAVKGVARFYKEK---KKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        26 ~~~~~R~~la~~l----~---~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~---g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +..++|+++|+++    +   ++++ +|++|+|+++++.++++++.    ++   ||.|+++...|+.+...   ++..|
T Consensus        66 G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~~~~gd~vlv~~P~y~~~~~~---~~~~g  138 (396)
T PRK09147         66 GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI----DRDGPGPLVVCPNPFYQIYEGA---ALLAG  138 (396)
T ss_pred             CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc----CCCCCCCEEEEcCCCccchHHH---HHhcC
Confidence            4678999999976    5   5665 89999999999999999887    77   88999866655554443   35579


Q ss_pred             cEEEEecCCCC
Q psy17798         95 FNVLGSNPGQG  105 (110)
Q Consensus        95 ~~v~~v~~~~~  105 (110)
                      ++++.||++++
T Consensus       139 ~~~~~vp~~~~  149 (396)
T PRK09147        139 AEPYFLNCDPA  149 (396)
T ss_pred             CEEEEeccCcc
Confidence            99999999854

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=98.73  E-value=8.6e-08  Score=70.28  Aligned_cols=77  Identities=10%  Similarity=0.091  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEE
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLG   99 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~   99 (110)
                      +...+..+++++.+|+++|++  ++++|+|+++|+..++.++.    ++||+||++...|++....+.. ++..|+++++
T Consensus        57 r~~~p~~~~le~~la~l~g~~--~~v~~ssG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~  130 (390)
T PRK08133         57 RFTNPTVTMFQERLAALEGAE--ACVATASGMAAILAVVMALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTF  130 (390)
T ss_pred             CCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEE
Confidence            334567889999999999974  68899999999999998876    8999999999999988877654 4678999999


Q ss_pred             ecCC
Q psy17798        100 SNPG  103 (110)
Q Consensus       100 v~~~  103 (110)
                      ++++
T Consensus       131 vd~~  134 (390)
T PRK08133        131 VDLT  134 (390)
T ss_pred             ECCC
Confidence            9875

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=98.73  E-value=1.7e-07  Score=66.92  Aligned_cols=81  Identities=11%  Similarity=0.079  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEE-EEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         23 SEKAVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHV-ITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~v-l~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..+.++++|+.+++++|++++  +|++++|+|+++..++.++.    .+++++ ++++.+|++..  ....+..|++++.
T Consensus        29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~----~~~~~vi~~~~~~~~~~~--~~~a~~~g~~~~~  102 (355)
T TIGR03301        29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV----PRDGKLLVLINGAYGERL--AKICEYLGIPHTD  102 (355)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc----CCCCeEEEECCCchhhHH--HHHHHHcCCceEE
Confidence            347899999999999999765  68899999999999999987    566664 45555555422  1222567999999


Q ss_pred             ecCCCCcccc
Q psy17798        100 SNPGQGGNFL  109 (110)
Q Consensus       100 v~~~~~G~~~  109 (110)
                      +++++++.+|
T Consensus       103 i~~~~~~~~d  112 (355)
T TIGR03301       103 LNFSEYEPPD  112 (355)
T ss_pred             EecCCCCCCC
Confidence            9987655443

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.72  E-value=4.8e-08  Score=69.40  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++++.++++++  ++++++++|+++++..++.++.    ++||+|+++...|+++...+...+..|++++.+|.+.
T Consensus        32 ~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  105 (338)
T cd06502          32 PTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN  105 (338)
T ss_pred             HHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC
Confidence            457889999999999  6789999999999999998876    7999999999999876543222233699999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=98.72  E-value=1.7e-08  Score=73.74  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHhC------CCCCcE--EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         21 WESEKAVEDARQEIATLIN------CDPKEI--IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~------~~~~~i--~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      +....+..++|+++++++.      +++++|  ++|+|+++|+.++++.+..  .++||+|++.+.-||.+..   .++.
T Consensus        65 Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~--~~pGd~Vlv~~P~y~~~~~---~~~~  139 (396)
T PRK09257         65 YLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKR--AFPDAKVWVSDPTWPNHRA---IFEA  139 (396)
T ss_pred             cCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHH--hCCCCeEEECCCCcccHHH---HHHH
Confidence            3345678899999999873      368887  9999999999999887641  2699999986666665554   4456


Q ss_pred             CCcEEEEecC
Q psy17798         93 EGFNVLGSNP  102 (110)
Q Consensus        93 ~g~~v~~v~~  102 (110)
                      .|++++.+|+
T Consensus       140 ~g~~~v~v~~  149 (396)
T PRK09257        140 AGLEVKTYPY  149 (396)
T ss_pred             cCCcEEEEec
Confidence            7999999997

>PRK12414 putative aminotransferase; Provisional

Probab=98.72  E-value=1.1e-07  Score=69.33  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHH----hCC--CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATL----INC--DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~----l~~--~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +..++|+.++++    +|+  ++ ++|++|+|+++++.++++++.    .+||+|+++...|+.+...+   +..|++++
T Consensus        67 G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~  139 (384)
T PRK12414         67 GIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV----HPGDEVIYFEPSFDSYAPIV---RLQGATPV  139 (384)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc----CCCCEEEEeCCCccchHHHH---HHcCCEEE
Confidence            455666666655    466  34 689999999999999999886    89999999888887755443   44699999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       140 ~v~~~~~~  147 (384)
T PRK12414        140 AIKLSPED  147 (384)
T ss_pred             EEecCccc
Confidence            99998543

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.71  E-value=1.8e-07  Score=65.96  Aligned_cols=72  Identities=15%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++++.+|+++|++ +-+++|+|+|+++..++.++.    ++||+|+++...|+++..++.   ..|+++++++++.
T Consensus        59 g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~---~~g~~~~~v~~~~  130 (294)
T cd00615          59 GPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLV---LSGAVPVYLKPER  130 (294)
T ss_pred             hHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHH---HCCCEEEEecCcc
Confidence            46889999999999975 345559999999999999886    899999999999999887764   3689999987763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06460 hypothetical protein; Provisional

Probab=98.71  E-value=5.2e-08  Score=71.13  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=69.0

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      .+..++.+.|..++......+++|+.+|++.++++ .++|++| ++|+..++.++.    ++||+|+++...++.....+
T Consensus        28 ~~~~~~~~~~~y~r~~~p~~~~L~~~lA~l~g~~~-~v~~~sG-~~ai~~~l~al~----~~Gd~Vl~~~~~~~~ty~~~  101 (376)
T PRK06460         28 AYHYPEGEKYRYSREANPTVLELTKKIVELENAEM-GVAFSSG-MGAISTTALALL----KPGNSVLVHRDMFGRSYRFF  101 (376)
T ss_pred             ceeeCCCCCcceeCCCCccHHHHHHHHHHHhCCCc-EEEeCCH-HHHHHHHHHHHh----CCCCEEEEecCCcCcHHHHH
Confidence            34444433567777788899999999999999854 5777555 689999988876    89999999876665444444


Q ss_pred             -HHHHhCCcEEEEecCCCCc
Q psy17798         88 -RILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        88 -~~l~~~g~~v~~v~~~~~G  106 (110)
                       ..++..|++++.++.++++
T Consensus       102 ~~~~~~~G~~v~~~~~~~~~  121 (376)
T PRK06460        102 TDYLKNWGVNVDASNPGSDN  121 (376)
T ss_pred             HHHHHhhCcEEEEECCCCHH
Confidence             3447789999999876543

>PRK06855 aminotransferase; Validated

Probab=98.70  E-value=3e-08  Score=73.42  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         24 EKAVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ..+..++|+++|+++    +  +++++|++|+|+++++.+++. +.    .+||.|++....||.+....  ....|+++
T Consensus        72 ~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~----~~Gd~Vlv~~P~Y~~~~~~~--~~~~g~~~  144 (433)
T PRK06855         72 TKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL----RREARVIGPSPAYSTHSSAE--AAHAGYPP  144 (433)
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc----CCCCeEEEeCCCCchHHHHH--HHhcCCeE
Confidence            346789999999998    3  578999999999999999874 54    79999998887777643221  12358888


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      +.+|+++
T Consensus       145 v~v~~~~  151 (433)
T PRK06855        145 VTYRLDP  151 (433)
T ss_pred             EEEeccc
Confidence            9999875

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.70  E-value=2.2e-07  Score=67.56  Aligned_cols=71  Identities=15%  Similarity=0.056  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+.+|++++++  +.++++|+|+|+++++.++.   +++||+|+++..+|+++..++   +..|++++++++++
T Consensus        30 ~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~---~~~Gd~Viv~~~~~~~~~~~~---~~~G~~~~~~~~~~  100 (380)
T TIGR03588        30 TVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALG---VGPGDRVWTTPITFVATANCA---LYCGAKVDFVDIDP  100 (380)
T ss_pred             hHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcC---CCCCCEEEeCCcchHHHHHHH---HHcCCEEEEEecCC
Confidence            4678999999999984  45666788999999999984   279999999999998876554   45799999999975

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.69  E-value=1.1e-07  Score=68.69  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHh-------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI-------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l-------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|+++       ++++++|++|+|+++++.+++..+.   .++||+|+++...||.+....   +..|+++
T Consensus        62 ~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~---~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~  135 (364)
T PRK07865         62 AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG---LGPGDVVVIPELAYPTYEVGA---RLAGATV  135 (364)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc---CCCCCEEEECCCCcccHHHHH---HhcCCEE
Confidence            35678899999988       3678999999999999999887762   179999999888888776554   3468887


Q ss_pred             EEec
Q psy17798         98 LGSN  101 (110)
Q Consensus        98 ~~v~  101 (110)
                      +.++
T Consensus       136 ~~~~  139 (364)
T PRK07865        136 VRAD  139 (364)
T ss_pred             EecC
Confidence            7765

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=98.69  E-value=8.8e-08  Score=70.15  Aligned_cols=73  Identities=18%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHh---CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc------
Q psy17798         25 KAVEDARQEIATLI---NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF------   95 (110)
Q Consensus        25 ~~~~~~R~~la~~l---~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~------   95 (110)
                      .+.+++|+++|+++   ++++|+|++|+|+++++.+++ .+.    .+||+|++....|+.+...+   +..|+      
T Consensus        75 ~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~-~l~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~~~  146 (402)
T TIGR03542        75 QGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ-SLF----GSDNTVAVQDPVYPAYVDSN---VMAGRAGVLDD  146 (402)
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH-Hhc----CCCCEEEEeCCCCcchHHHH---HHcCCcccccc
Confidence            46789999999987   688999999999999999864 443    68999998776666655444   45688      


Q ss_pred             -----EEEEecCCCC
Q psy17798         96 -----NVLGSNPGQG  105 (110)
Q Consensus        96 -----~v~~v~~~~~  105 (110)
                           +++.+|++++
T Consensus       147 ~~~~~~~~~v~~~~~  161 (402)
T TIGR03542       147 DGRYSKITYLPCTKE  161 (402)
T ss_pred             ccccceEEEeecchh
Confidence                 9999998753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.68  E-value=1.5e-07  Score=68.20  Aligned_cols=93  Identities=16%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             hhhhhhcCCCCCcCChHHHHHH---HHHHHHHHHHHHHhCCC-CCcEEEeCC-hHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESE---KAVEDARQEIATLINCD-PKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVITTQ   77 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~---~~~~~~R~~la~~l~~~-~~~i~~t~g-at~a~~~i~~~l~~~~~~~g~~vl~~~   77 (110)
                      +|+.... |.++|.+..+....   +.++++|+.++++++++ ..+|+|++| +|+|++.++.++.    .+++++++..
T Consensus        13 ~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~----~~~~~~l~i~   87 (349)
T TIGR01364        13 KELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL----AEGKVADYIV   87 (349)
T ss_pred             HHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC----CCCCeEEEEE
Confidence            4555444 88888776666555   88999999999999973 457988877 9999999999987    5777765432


Q ss_pred             CCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798         78 TEHKCVLDSCRIL-EGEGFNVLGSNPG  103 (110)
Q Consensus        78 ~e~ps~~~~~~~l-~~~g~~v~~v~~~  103 (110)
                        ...+-.-|..+ ++.|+ +..++.+
T Consensus        88 --~G~fg~r~~~~a~~~g~-~~~~~~~  111 (349)
T TIGR01364        88 --TGAWSKKAAKEAKKYGV-VNVVASG  111 (349)
T ss_pred             --CCHHHHHHHHHHHHhCC-cEEEecc
Confidence              23333333444 67788 7777654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.68  E-value=1.4e-07  Score=69.24  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798         18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN   96 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~   96 (110)
                      ..++...+..+++++.+|++.|+  +++++++|+++|+++++.++.    ++||+||++...|+++...+..+ +..|++
T Consensus        58 ~Y~r~~~pt~~~Le~~lA~l~g~--~~~l~~~sgt~Ai~~~l~al~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~  131 (394)
T PRK07050         58 RYGLHATPTSLALAQRLAEIEGG--RHALLQPSGLAAISLVYFGLV----KAGDDVLIPDNAYGPNRDHGEWLARDFGIT  131 (394)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCC--CeEEEeccHHHHHHHHHHHHh----CCCCEEEEecCCcccHHHHHHHHHHhcCeE
Confidence            34444556778999999999985  589999999999999999986    89999999999999888766544 677999


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      +++++.+
T Consensus       132 v~~vd~~  138 (394)
T PRK07050        132 VRFYDPL  138 (394)
T ss_pred             EEEECCC
Confidence            9988754

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.64  E-value=4.7e-07  Score=65.91  Aligned_cols=73  Identities=10%  Similarity=0.062  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..+++.+.+++++++  +++++|+|+++|+++++.++.   +++||+|+++...|+++..++   +..|++++++++|++
T Consensus        32 ~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~---~~~Gd~Viv~~~t~~~~~~~~---~~~G~~~v~~d~d~~  103 (375)
T PRK11706         32 FTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLD---IQPGDEVIMPSYTFVSTANAF---VLRGAKIVFVDIRPD  103 (375)
T ss_pred             HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhC---CCCCCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCC
Confidence            345666777877776  589999999999999887664   279999999999999987665   446999999999877


Q ss_pred             c
Q psy17798        106 G  106 (110)
Q Consensus       106 G  106 (110)
                      +
T Consensus       104 ~  104 (375)
T PRK11706        104 T  104 (375)
T ss_pred             c
Confidence            5

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.64  E-value=4.8e-07  Score=65.65  Aligned_cols=72  Identities=19%  Similarity=0.254  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+.+.++++.+|+++|++  ++++++|+++++..++.++.    ++||+|+++..+|.+....   ++..|++++.+|.+
T Consensus        50 ~~~~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~h~s~~~~---~~~~g~~~~~~~~~  120 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALC----KEGDWVVLDGLAHYTSYVA---AERAGLNVKEVPHT  120 (370)
T ss_pred             chHHHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhh----CCCCEEEECCcccHHHHHH---HHHcCCEEEEEecC
Confidence            346788999999999986  46678999999999999987    7999999988999887643   35679999999986


Q ss_pred             C
Q psy17798        104 Q  104 (110)
Q Consensus       104 ~  104 (110)
                      +
T Consensus       121 ~  121 (370)
T TIGR02539       121 G  121 (370)
T ss_pred             C
Confidence            3

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK07777 aminotransferase; Validated

Probab=98.63  E-value=3.8e-07  Score=66.38  Aligned_cols=74  Identities=23%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHh----CC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----NC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++++++    +.  +++ +|++|+|+++|+..++.++.    .+||+|++....|+++...   ++..|+++
T Consensus        61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~vli~~p~y~~~~~~---~~~~g~~~  133 (387)
T PRK07777         61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV----EPGDEVLLIEPYYDSYAAV---IAMAGAHR  133 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHH---HHHCCCEE
Confidence            34677888888764    44  465 79999999999999988876    7999999887777776533   34568999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       134 ~~~~~~~~  141 (387)
T PRK07777        134 VPVPLVPD  141 (387)
T ss_pred             EEeecCCc
Confidence            99998865

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.62  E-value=4.4e-07  Score=73.03  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ..-+.+.+.+..+++++|+++.++.+..++|.+...++.++.+   ++  +++|++++.+||++..+|+.+ +..|++|+
T Consensus       118 G~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~---~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~  194 (954)
T PRK05367        118 GRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRV---SKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV  194 (954)
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhh---ccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence            3446788899999999999999999999999999999988763   44  489999999999999999887 67899999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|.+.
T Consensus       195 ~~~~~~  200 (954)
T PRK05367        195 VGDAAK  200 (954)
T ss_pred             EecCcc
Confidence            999865

>PRK09082 methionine aminotransferase; Validated

Probab=98.61  E-value=4.1e-07  Score=66.29  Aligned_cols=73  Identities=23%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHH----hCC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATL----INC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~----l~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +..++|++++++    ++.  +++ +|++|+|+++++.+++.++.    .+||+|+++...|+++...+   +..|++++
T Consensus        68 G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~Vli~~p~y~~~~~~~---~~~g~~~~  140 (386)
T PRK09082         68 GVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV----RPGDEVIVFDPSYDSYAPAI---ELAGGRAV  140 (386)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc----CCCCEEEEeCCCchhhHHHH---HHcCCEEE
Confidence            455677777765    454  344 79999999999999999886    79999999988888876555   34699999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|++.+
T Consensus       141 ~~~~~~~  147 (386)
T PRK09082        141 RVALQPP  147 (386)
T ss_pred             EEecCcc
Confidence            9999743

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.60  E-value=8e-08  Score=62.24  Aligned_cols=53  Identities=21%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHh----C----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798         25 KAVEDARQEIATLI----N----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+..++|+++|+++    +    ++|++|++|+|+++++.++++++.    ++||.|++...-||
T Consensus        92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~----dpGD~VlVp~P~Y~  152 (153)
T PLN02994         92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA----DPGDAFLVPTPYYA  152 (153)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc----CCCCEEEEeCCCCC
Confidence            36788999999988    3    468999999999999999999988    89999998766554

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.58  E-value=3.5e-07  Score=65.46  Aligned_cols=66  Identities=6%  Similarity=0.015  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      .++|+++|++++.  ++|++|+|+++++.+++.  .    .+||+|++.+..|+.+.   ..++..|++++.+|+++
T Consensus        52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~--~----~~gd~v~v~~P~y~~~~---~~~~~~g~~~~~v~~~~  117 (330)
T PRK05664         52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPR--L----RAPGRVGVLSPCYAEHA---HAWRRAGHQVRELDEAE  117 (330)
T ss_pred             HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHH--c----cCCCEEEEcCCChHHHH---HHHHHcCCeEEEechhh
Confidence            7899999999984  799999999999998853  2    68999997555555444   44466799999998753

>PLN02721 threonine aldolase

Probab=98.58  E-value=2.7e-07  Score=65.90  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc-CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE-KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~-~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+++|++++.+.  +++++++++++..++.++.    + +||+|++++..|.+........+..|++++.+|.++
T Consensus        41 ~~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  114 (353)
T PLN02721         41 TALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHC----DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNE  114 (353)
T ss_pred             HHHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHc----cCCCCeEEEcCccceehhcccchhhhcCceeEecCCCc
Confidence            36899999999999753  5777777877766666654    5 899999988887654432112345799999999887


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      +|.+|
T Consensus       115 ~~~~d  119 (353)
T PLN02721        115 DGTMD  119 (353)
T ss_pred             CCCcC
Confidence            77554

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=98.57  E-value=7.8e-07  Score=64.71  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         27 VEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        27 ~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..++|+++|++.+ .++++|++++|++|.+.++++++.    .+||.|+++...|+.+...+   +..|++++.+|.++
T Consensus        59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~----~~gd~vl~~~Ptf~~Y~~~a---~~~g~~~~~v~~~~  130 (356)
T COG0079          59 YRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV----EPGDTVLIPEPTFSMYEIAA---QLAGAEVVKVPLKE  130 (356)
T ss_pred             HHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh----cCCCEEEEcCCChHHHHHHH---HhcCCeEEEecccc
Confidence            5689999999999 788999999999999999999988    89999998877776665544   45799999999876

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.55  E-value=4e-07  Score=67.81  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=62.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~   95 (110)
                      +..++...+..+.+++.+|++.|+ ++.|+|++|+ .|+.+++.++.    ++||+||++..+|++....+ ..+++.|+
T Consensus        61 ~~Y~r~~~pt~~~le~~la~l~g~-~~~v~fsSG~-~Ai~~al~~ll----~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi  134 (437)
T PRK05613         61 PIYSRLTNPTVEALENRIASLEGG-VHAVAFASGQ-AAETAAILNLA----GAGDHIVTSPRLYGGTETLFLVTLNRLGI  134 (437)
T ss_pred             ceeeCccChHHHHHHHHHHHHhCC-CeEEEeCCHH-HHHHHHHHHhc----CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence            445555667889999999999998 3567777776 77777777765    89999999999999985544 44577899


Q ss_pred             EEEEec
Q psy17798         96 NVLGSN  101 (110)
Q Consensus        96 ~v~~v~  101 (110)
                      ++++++
T Consensus       135 ~v~~vd  140 (437)
T PRK05613        135 EVTFVE  140 (437)
T ss_pred             EEEEEC
Confidence            999997

>PRK06107 aspartate aminotransferase; Provisional

Probab=98.53  E-value=6.6e-07  Score=65.56  Aligned_cols=72  Identities=15%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHh----CC--CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI----NC--DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~--~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      +..++|+++++++    +.  ++++|++|+|+++|+++++.++.    ++||+|++++..|+.+....   ...|..++.
T Consensus        71 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~----~~gd~vl~~~p~y~~y~~~~---~~~~~~~~~  143 (402)
T PRK06107         71 GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL----EAGDEVIIPAPYWVSYPDMV---LANDGTPVI  143 (402)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCCCcCHHHHH---HHcCCEEEE
Confidence            4557777777655    44  68999999999999999998875    89999999888777765443   335677778


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +++++
T Consensus       144 v~~~~  148 (402)
T PRK06107        144 VACPE  148 (402)
T ss_pred             ecCCc
Confidence            88763

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=98.53  E-value=9.7e-07  Score=63.88  Aligned_cols=67  Identities=9%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC---CCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ---TEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~---~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +...++++.+|+++|++++++++++|+++++..++.++.    ++||+|+++.   ..|+++...   .+..|+++.
T Consensus        54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~----~~gd~Vli~~~d~p~~~s~~~~---~~l~ga~~~  123 (346)
T TIGR03576        54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE----PPGRKVVHYLPEKPAHPSIPRS---CKLAGAEYF  123 (346)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC----CCCCEEEECCCCCCCchhHHHH---HHHcCCEEe
Confidence            567889999999999999999999999999999999987    8999999754   355554433   344566653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.52  E-value=1.2e-06  Score=65.35  Aligned_cols=74  Identities=9%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-----hccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-----YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-----~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...++++.+|++++++  ++++++|+|+|+.+++.++...     .+++||+||++..+|+++..++.   ..|++++++
T Consensus        64 ~~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~---~~G~~pv~v  138 (438)
T PRK15407         64 FNDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII---QNGLVPVFV  138 (438)
T ss_pred             hHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH---HcCCEEEEE
Confidence            4578999999999974  6999999999999998876310     13789999999999999887764   469999999


Q ss_pred             cCCC
Q psy17798        101 NPGQ  104 (110)
Q Consensus       101 ~~~~  104 (110)
                      +++.
T Consensus       139 dvd~  142 (438)
T PRK15407        139 DVEL  142 (438)
T ss_pred             ecCC
Confidence            9874

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=98.51  E-value=8.2e-07  Score=63.50  Aligned_cols=66  Identities=12%  Similarity=0.132  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ..++|+.+|+++++++++|++|+|+++++..+++++     .+| .|++++..|+.+...   ++..|++++.+|
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-----~~g-~vl~~~p~y~~~~~~---~~~~g~~~~~~~  114 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-----APG-RVLVLAPTYSEYARA---WRAAGHEVVELP  114 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-----CCC-eEEEeCCCcHHHHHH---HHHcCCEEEEeC
Confidence            489999999999999999999999999999987653     466 688776666665544   456799999887

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0259|consensus

Probab=98.51  E-value=3.4e-07  Score=66.56  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         21 WESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +....++..+|+++|++++      .++++|++|+|.++|+.+++.++.    +||.+|+++..-||-+....   +..|
T Consensus        99 Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA----~p~aNILlPrPGfp~Y~~~a---~~~~  171 (447)
T KOG0259|consen   99 YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA----NPGANILLPRPGFPLYDTRA---IYSG  171 (447)
T ss_pred             cCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc----CCCCceecCCCCCchHHHhh---hhcC
Confidence            3445678899999999986      367999999999999999999998    89999999887777655432   4468


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++|+...+-
T Consensus       172 lEVR~ydlL  180 (447)
T KOG0259|consen  172 LEVRYYDLL  180 (447)
T ss_pred             ceeEeeccc
Confidence            898886543

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=98.50  E-value=7.6e-07  Score=65.40  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798         18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN   96 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~   96 (110)
                      ..++........+++.+|++.++  +++++|+|+++|+++++.++.    ++||+|+++...|++....+... ...|++
T Consensus        46 ~Y~R~~npt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~  119 (388)
T PRK08861         46 DYTRSGNPNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGDFK  119 (388)
T ss_pred             cccCCCCchHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCCeE
Confidence            34444556788899999999984  799999999999999999886    89999999988888766666554 456788


Q ss_pred             EEEecC
Q psy17798         97 VLGSNP  102 (110)
Q Consensus        97 v~~v~~  102 (110)
                      +++++.
T Consensus       120 v~~vd~  125 (388)
T PRK08861        120 VQFVDQ  125 (388)
T ss_pred             EEEECC
Confidence            888764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=98.50  E-value=1.1e-06  Score=64.24  Aligned_cols=74  Identities=8%  Similarity=0.035  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~  101 (110)
                      .....+++++.+|+++|+  ++++++++++.|++.++. +.    ++||+||++..+|+++...|..+ +..|+++++++
T Consensus        45 ~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd  117 (378)
T TIGR01329        45 GNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVD  117 (378)
T ss_pred             CChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence            344578999999999998  455555666679888765 44    79999999999999988877765 67899999998


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      ++
T Consensus       118 ~~  119 (378)
T TIGR01329       118 TT  119 (378)
T ss_pred             CC
Confidence            75

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=98.49  E-value=1.4e-06  Score=64.21  Aligned_cols=80  Identities=11%  Similarity=0.092  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      |..++...+..+++++.+|++.|++  +.++++++++|+..++.++.    ++||+|+++...|++....+.. ++..|+
T Consensus        56 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         56 HIYSRNTNPTVQAFEEKVRILEGAE--AATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            5556666778899999999999964  45666666889999988876    7999999999999988777765 467899


Q ss_pred             EEEEecC
Q psy17798         96 NVLGSNP  102 (110)
Q Consensus        96 ~v~~v~~  102 (110)
                      ++++++.
T Consensus       130 ~v~~vd~  136 (398)
T PRK08249        130 DVTLCET  136 (398)
T ss_pred             EEEEcCC
Confidence            9988764

>PLN02263 serine decarboxylase

Probab=98.49  E-value=2.4e-06  Score=64.09  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798          7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus         7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      +..++|-. ....+..+.+...++-+.+++++|.++++  -+||+|+|||+-..+.+....  .++..++++..-|.|+.
T Consensus       116 nN~Gdp~~-~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~--~~~~vvy~S~~aH~Sv~  192 (470)
T PLN02263        116 NNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVF  192 (470)
T ss_pred             cCCCCccc-cCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh--cCCcEEEEcCCccHHHH
Confidence            33444443 22223356777888999999999987643  688999999998887765421  24558899999999999


Q ss_pred             HHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         85 DSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        85 ~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .+...   .|++++.||+|++|.+|
T Consensus       193 KAa~l---lgi~~~~Vp~d~~g~mD  214 (470)
T PLN02263        193 KAARM---YRMECVKVDTLVSGEID  214 (470)
T ss_pred             HHHHh---cCCcceEeccCCCCcCc
Confidence            87765   58899999999988876

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.49  E-value=1.6e-06  Score=62.92  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++-+.+++++++  ..++.++|+|.|+.+++.++..   ++||+|+++...+++...++.   ..|++++++.+|+
T Consensus        25 ~~~~~fE~~~a~~~g~--~~~~~~~sgt~Al~~al~~l~~---~~gdeVi~p~~t~~~~~~ai~---~~G~~pv~~Di~~   96 (363)
T PF01041_consen   25 PYVEEFEKEFAEYFGV--KYAVAVSSGTSALHLALRALGL---GPGDEVIVPAYTFPATASAIL---WAGAEPVFVDIDP   96 (363)
T ss_dssp             HHHHHHHHHHHHHHTS--SEEEEESSHHHHHHHHHHHTTG---GTTSEEEEESSS-THHHHHHH---HTT-EEEEE-BET
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEeCChhHHHHHHHHhcCC---CcCceEecCCCcchHHHHHHH---HhccEEEEEeccC
Confidence            3567888899999984  6899999999999999999873   899999999999999888774   4699999999994


Q ss_pred             -Ccccc
Q psy17798        105 -GGNFL  109 (110)
Q Consensus       105 -~G~~~  109 (110)
                       ++.+|
T Consensus        97 ~~~~id  102 (363)
T PF01041_consen   97 ETLNID  102 (363)
T ss_dssp             TTSSB-
T ss_pred             CcCCcC
Confidence             56554

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.48  E-value=9.7e-07  Score=63.52  Aligned_cols=68  Identities=7%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         28 EDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        28 ~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      .++|+.+|++++++ +++|++|+|+++++.++.. +.    ++|+ |++..   |++......++..|++++.+|++.
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~---P~y~~y~~~~~~~g~~~~~v~~~~  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAP---LAYSEYAPAFARHGHRVVPLDEAA  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcC---CCcHHHHHHHHHCCCEEEeecccc
Confidence            78999999999996 6999999999999997754 33    5666 66544   555544445566799999998864

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=98.48  E-value=7.1e-07  Score=63.59  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+..+++|+.++++++++ + .++++++++++..+++++.    ++||+|+++..+|+++...+   +..|++++.++.
T Consensus        44 ~~~~~~~l~~~la~~~~~~-~-~iv~~sg~~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~  114 (349)
T cd06454          44 TSDLHEELEEELAEFHGKE-A-ALVFSSGYAANDGVLSTLA----GKGDLIISDSLNHASIIDGI---RLSGAKKRIFKH  114 (349)
T ss_pred             CchHHHHHHHHHHHHhCCC-C-EEEeccHHHHHHHHHHHhc----CCCCEEEEehhhhHHHHHHH---HHcCCceEEecC
Confidence            4567789999999999974 3 4555555778877777765    79999999998998876554   446888887753

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=98.47  E-value=2.6e-06  Score=62.72  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v~~v~~  102 (110)
                      .+....+|+.||++.++  +++++++|+++|++.++.++.    ++||+||+++..|++....+ ..+++.|+++.+++.
T Consensus        60 npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~all----~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~  133 (394)
T PRK09028         60 TPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSFL----KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDP  133 (394)
T ss_pred             CchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECC
Confidence            34567899999999765  479999999999999999886    89999999999997776543 445678999988875


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       134 ~  134 (394)
T PRK09028        134 M  134 (394)
T ss_pred             C
Confidence            4

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=98.46  E-value=2.4e-06  Score=62.68  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .++...+...++++.+|+++++  +++++++|++.|+..++.++.    ++||+|+++...|+++...+..++..|++++
T Consensus        47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ll----~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~  120 (385)
T PRK08574         47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSLL----KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVV  120 (385)
T ss_pred             EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHhhccCcEEE
Confidence            3344455688899999999986  467778889999999998876    8999999999999998887776666789888


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+..+
T Consensus       121 ~~~~d  125 (385)
T PRK08574        121 LAYPS  125 (385)
T ss_pred             EECCC
Confidence            87654

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=98.46  E-value=1.2e-06  Score=64.24  Aligned_cols=79  Identities=11%  Similarity=0.100  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798         18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN   96 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~   96 (110)
                      ..++.......++++.+|++.+.  +++++|+|+++|+.+++.++.    ++||+|+++...|++....+..+ ...|++
T Consensus        44 ~Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all----~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~  117 (382)
T TIGR02080        44 DYSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL----GPDDLLVAPHDCYGGTYRLLNALAKKGCFR  117 (382)
T ss_pred             cccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhcCeE
Confidence            34444556678899999999984  689999999999999999986    89999999999999877777665 445678


Q ss_pred             EEEecC
Q psy17798         97 VLGSNP  102 (110)
Q Consensus        97 v~~v~~  102 (110)
                      +..++.
T Consensus       118 v~~~d~  123 (382)
T TIGR02080       118 VLFVDQ  123 (382)
T ss_pred             EEEECC
Confidence            877753

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.46  E-value=7.9e-07  Score=63.81  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHh-HHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         24 EKAVEDARQEIATLIN------CDPK-EIIFTSGATESNNIAVKGV-ARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~------~~~~-~i~~t~gat~a~~~i~~~l-~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ..+.+++|+++|++++      .+++ +|++++|+++++..+...+ .    ++|+.|++....|+.+....   +..|+
T Consensus        43 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~---~~~g~  115 (363)
T PF00155_consen   43 PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAA---RLLGA  115 (363)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHH---HHTTS
T ss_pred             chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCccccccccc---cccCc
Confidence            3467899999999998      7888 9999999999999988887 4    78999999888888876555   45699


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.+|++
T Consensus       116 ~~~~~~~~  123 (363)
T PF00155_consen  116 EVIPVPLD  123 (363)
T ss_dssp             EEEEEEEE
T ss_pred             eeeecccc
Confidence            99999965

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=98.45  E-value=1.4e-06  Score=63.73  Aligned_cols=78  Identities=14%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ++...+...++++.+|+++|+  +.+++++|+++|+..++.++.    ++||+|+++...|++....+..+ +..|++++
T Consensus        49 ~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~  122 (380)
T TIGR01325        49 SRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLL----QAGDHVVASRSLFGSTVGFISEILPRFGIEVS  122 (380)
T ss_pred             ecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEecCCcchHHHHHHHHHHHhCCEEE
Confidence            333455688999999999987  467889999999999998876    79999999988888776666544 67899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .++++
T Consensus       123 ~v~~~  127 (380)
T TIGR01325       123 FVDPT  127 (380)
T ss_pred             EECCC
Confidence            99875

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=98.43  E-value=2.4e-06  Score=62.17  Aligned_cols=80  Identities=13%  Similarity=0.106  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v   97 (110)
                      .++...+...++++++|++.  . ++.++++++++|++.++.++.    ++||+||++...|+.+.... ..++..|+++
T Consensus        45 y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v  117 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALL----RPGDTVVVPADGYYQVRALAREYLAPLGVTV  117 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEE
Confidence            33344567889999999998  3 455666666789999998875    89999999888886665443 3456789999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.++.+++
T Consensus       118 ~~v~~~~~  125 (366)
T PRK07582        118 REAPTAGM  125 (366)
T ss_pred             EEECCCCh
Confidence            99998754

>PRK08064 cystathionine beta-lyase; Provisional

Probab=98.43  E-value=1.4e-06  Score=63.95  Aligned_cols=80  Identities=18%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      +..++...+...++++.+|++.|++ +.+++++| +.++..++. +.    ++||+||++..+|++....|..+ +..|+
T Consensus        46 ~~y~r~~~p~~~~le~~lA~l~g~~-~~v~~~sG-~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~  118 (390)
T PRK08064         46 YDYSRSGNPTREALEDIIAELEGGT-KGFAFASG-MAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGI  118 (390)
T ss_pred             CcccCCCChhHHHHHHHHHHHhCCC-CeEEECCH-HHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence            3445555677889999999999987 46666555 567776664 33    78999999999999887777654 67899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.++++
T Consensus       119 ~v~~v~~~  126 (390)
T PRK08064        119 EHTFVDMT  126 (390)
T ss_pred             EEEEECCC
Confidence            99999874

>PTZ00376 aspartate aminotransferase; Provisional

Probab=98.43  E-value=3.5e-07  Score=67.07  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC------CCCCcEE--EeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         21 WESEKAVEDARQEIATLIN------CDPKEII--FTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~------~~~~~i~--~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      +....++.++|+++|+++.      +++++|+  .|.|+++|+.+++..+. .++++||+|++.+..||.+.   ..++.
T Consensus        68 Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~-~~~~~Gd~Vlv~~P~y~~~~---~~~~~  143 (404)
T PTZ00376         68 YLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLK-RFLPAGTTVYVSNPTWPNHV---NIFKS  143 (404)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHH-HhcCCCCEEEEcCCCchhHH---HHHHH
Confidence            3345678899999999872      4778998  49999999998876432 12389999997665555554   44466


Q ss_pred             CCcEEEEecCC
Q psy17798         93 EGFNVLGSNPG  103 (110)
Q Consensus        93 ~g~~v~~v~~~  103 (110)
                      .|++++.+|++
T Consensus       144 ~G~~~~~v~l~  154 (404)
T PTZ00376        144 AGLNVKEYRYY  154 (404)
T ss_pred             cCCceeecccc
Confidence            89999999983

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=98.42  E-value=2.6e-06  Score=61.99  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      +..++...+...++++.+|++.++  ++.+++++++.|+..++.++.    ++||+|+++...|++....+... +..|+
T Consensus        32 ~~y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          32 YIYSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALL----KAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             ceeECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHc----CCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            455555567888999999999986  456777888999999999886    79999999999998887766554 56899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.+++.+
T Consensus       106 ~~~~v~~~  113 (369)
T cd00614         106 EVTFVDPD  113 (369)
T ss_pred             EEEEeCCC
Confidence            99998875

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07503 methionine gamma-lyase; Provisional

Probab=98.42  E-value=1.9e-06  Score=63.54  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH-HHHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR-ILEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~-~l~~~g~   95 (110)
                      +..++...+...++++.+|++.|++.  .++++|++.|+.+++.++.    ++||+||++...|+.....+. .++..|+
T Consensus        57 ~~y~r~~~p~~~~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~ll----~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~  130 (403)
T PRK07503         57 HFYSRISNPTLALLEQRMASLEGGEA--AVALASGMGAITATLWTLL----RPGDEVIVDQTLYGCTFAFLHHGLGEFGV  130 (403)
T ss_pred             ceeeCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHc----CCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence            44444455678899999999999853  4666677889999988775    899999998888876554443 3467899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.++++
T Consensus       131 ~v~~vd~~  138 (403)
T PRK07503        131 TVRHVDLT  138 (403)
T ss_pred             EEEEeCCC
Confidence            99999875

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=98.41  E-value=1.5e-06  Score=63.77  Aligned_cols=79  Identities=10%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++......+++++.+|++.+.  +++++++|+++++..++.++.    ++||+|+++...|++....+..+ ...|+
T Consensus        44 ~~Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         44 HDYSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             ceeeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            344455556788999999999985  469999999999999998876    89999999999999877777666 34556


Q ss_pred             EEEEec
Q psy17798         96 NVLGSN  101 (110)
Q Consensus        96 ~v~~v~  101 (110)
                      ++..++
T Consensus       118 ~v~~vd  123 (386)
T PRK08045        118 RVLFVD  123 (386)
T ss_pred             EEEEeC
Confidence            777765

>PRK07179 hypothetical protein; Provisional

Probab=98.39  E-value=5.2e-06  Score=60.92  Aligned_cols=87  Identities=8%  Similarity=0.035  Sum_probs=61.7

Q ss_pred             hhhhhhcCCCCC-cCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          3 PYLTNAYGNPHS-RTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         3 ~~~~~~~~n~~~-~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      +.++....|++. +.|..+..   ...++.+.+|++++++  .++|++|+++|+..+++++.    .+|+.|+++..+|+
T Consensus        79 ~~~~~~~~~~~~s~~~~~~~~---~~~~le~~la~~~g~~--~~~~~~sG~~An~~~l~~l~----~~g~~v~~~~~~h~  149 (407)
T PRK07179         79 AALQEEGDSLVMSAVFLHDDS---PKPQFEKKLAAFTGFE--SCLLCQSGWAANVGLLQTIA----DPNTPVYIDFFAHM  149 (407)
T ss_pred             HHHHHhCCCCCccccccCCch---HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhC----CCCCEEEEECCcCH
Confidence            344444555632 24443322   4556678999999974  57889999999999999987    78999999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEec
Q psy17798         82 CVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~  101 (110)
                      ++....   +..|+++..++
T Consensus       150 s~~~~~---~~~g~~~~~~~  166 (407)
T PRK07179        150 SLWEGV---RAAGAQAHPFR  166 (407)
T ss_pred             HHHHHH---HHCCCeEEEec
Confidence            986543   33566666554

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=98.39  E-value=2.2e-06  Score=63.45  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ++...+...++++.+|++.|+  +..+++++++.|+..++.++.    ++||+||++...|++....+... +..|++++
T Consensus        52 sr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~  125 (418)
T TIGR01326        52 SRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLA----QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVR  125 (418)
T ss_pred             ECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEE
Confidence            333445678999999999996  467899999999999998876    79999999999998877666554 67899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      +++.+
T Consensus       126 ~v~~~  130 (418)
T TIGR01326       126 FVDPD  130 (418)
T ss_pred             EECCC
Confidence            98864

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=98.39  E-value=1e-06  Score=64.72  Aligned_cols=62  Identities=18%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhh-ccCCCEEEE-cCCCChhHHHH
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFY-KEKKKHVIT-TQTEHKCVLDS   86 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~-~~~g~~vl~-~~~e~ps~~~~   86 (110)
                      .+..++|++||+++      ++++++|++|+|+++++.+++.++.... ..+||.|++ ...+||.+...
T Consensus        74 ~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~  143 (416)
T PRK09440         74 QGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADA  143 (416)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHH
Confidence            45678999999988      3689999999999999999999886100 015889998 58888887654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=98.37  E-value=1.7e-06  Score=62.81  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             CCCcCChHHHH----HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798         12 PHSRTHAYGWE----SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus        12 ~~~~~~~~~~~----~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      |++|.|..|..    ..+.++++|+.+|++++++ +.++|++|++ ++..++..+.    ++++.|+++..+|+|+..++
T Consensus        39 p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~~l~~~sG~~-a~~~~~~~~~----~~~d~ii~d~~~H~sv~~~~  112 (370)
T PRK05937         39 PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-EAFIVPSGYM-ANLGLCAHLS----SVTDYVLWDEQVHISVVYSL  112 (370)
T ss_pred             CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-eEEEECChHH-HHHHHHHHhC----CCCCEEEEEhhhhHHHHHHH
Confidence            54434555555    7789999999999999984 4578888774 4433333333    67889999899999999888


Q ss_pred             HHH
Q psy17798         88 RIL   90 (110)
Q Consensus        88 ~~l   90 (110)
                      ..+
T Consensus       113 ~~~  115 (370)
T PRK05937        113 SVI  115 (370)
T ss_pred             HHc
Confidence            654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=98.36  E-value=3.1e-06  Score=63.46  Aligned_cols=71  Identities=10%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ...+.++|++++++++.  ++|++|+|+++|+++++.++.    ++|| |++++..++++....   +..|++++.+|++
T Consensus        77 ~~g~~~Lreaia~~~~~--~~vv~t~ggt~A~~~~~~all----~pGD-Vii~~p~~~~~~~~i---~~~G~~~v~v~~~  146 (460)
T PRK13238         77 SRSYYRLEDAVKDIFGY--PYTIPTHQGRAAEQILFPVLI----KKGD-VVPSNYHFDTTRAHI---ELNGATAVDLVID  146 (460)
T ss_pred             CCCHHHHHHHHHHHhCC--CcEEECCCHHHHHHHHHHHhC----CCCC-EEccCCcccchHHHH---HHcCCEEEEEecc
Confidence            34678999999999986  579999999999999998886    8999 888887777765433   3479999999986


Q ss_pred             C
Q psy17798        104 Q  104 (110)
Q Consensus       104 ~  104 (110)
                      +
T Consensus       147 ~  147 (460)
T PRK13238        147 E  147 (460)
T ss_pred             c
Confidence            4

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=98.35  E-value=2.9e-06  Score=62.10  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v   97 (110)
                      .++...+....+.+.+|++.++  +++++++|+++|+..++.++.    ++||+||+++..|++....+.. ++..|+++
T Consensus        44 Y~r~gnPt~~~lE~~lA~l~g~--~~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v  117 (377)
T TIGR01324        44 YGRRGTLTHFALQDAMCELEGG--AGCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDI  117 (377)
T ss_pred             ccCCCCccHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEE
Confidence            3344446677899999999986  479999999999999999886    8999999999999876654433 46678998


Q ss_pred             EEecCC
Q psy17798         98 LGSNPG  103 (110)
Q Consensus        98 ~~v~~~  103 (110)
                      ..++.+
T Consensus       118 ~~~d~~  123 (377)
T TIGR01324       118 TYYDPL  123 (377)
T ss_pred             EEECCC
Confidence            887653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05939 hypothetical protein; Provisional

Probab=98.34  E-value=3.6e-06  Score=62.01  Aligned_cols=81  Identities=12%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      |..++...+...++.+.+|++.++.. .|+|++| +.|+..++.++.    ++||+||++..+|++....+..++..|++
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~~~-~v~~ssG-~~Ai~~~l~all----~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~  112 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGGVG-TVCFATG-MAAIAAVFLTLL----RAGDHLVSSQFLFGNTNSLFGTLRGLGVE  112 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCCe-EEEeCCH-HHHHHHHHHHHc----CCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence            33444445678889999999998753 4555555 799999988876    89999999999999887777777778999


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      +++++++
T Consensus       113 v~~v~~~  119 (397)
T PRK05939        113 VTMVDAT  119 (397)
T ss_pred             EEEECCC
Confidence            9999874

>PRK06234 methionine gamma-lyase; Provisional

Probab=98.34  E-value=6.6e-06  Score=60.60  Aligned_cols=75  Identities=12%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~v~  101 (110)
                      ......++++.+|++.+.+  ++++++|++.|+..++.++.    ++||+|+++...|++....+.. ++..|+++++++
T Consensus        62 ~~p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd  135 (400)
T PRK06234         62 GNPTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD  135 (400)
T ss_pred             CCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence            3466789999999999963  67888888899988888776    8999999999999887766544 367899999988


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      .+
T Consensus       136 ~~  137 (400)
T PRK06234        136 TS  137 (400)
T ss_pred             CC
Confidence            64

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=98.33  E-value=3.8e-06  Score=62.06  Aligned_cols=80  Identities=10%  Similarity=0.131  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798         18 AYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN   96 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~   96 (110)
                      ..++...+..+++++.+|++.++ ++.|+ ++|+++|+++++.++.    ++||+|+++...|++....+..+ +..|++
T Consensus        53 ~y~R~~~p~~~~Le~~lA~l~g~-~~~v~-~~sG~~Ai~~~l~all----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~  126 (405)
T PRK08776         53 DYTRSGNPTRDLLGEALAELEGG-AGGVI-TATGMGAINLVLNALL----QPGDTLVVPHDAYGGSWRLFNALAKKGHFA  126 (405)
T ss_pred             cccCCCChHHHHHHHHHHHHhCC-CceEE-EcCHHHHHHHHHHHHh----CCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence            33444455677899999999997 34555 5555799999999886    89999999888887766555554 556888


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      ++.++.+
T Consensus       127 v~~v~~~  133 (405)
T PRK08776        127 LITADLT  133 (405)
T ss_pred             EEEECCC
Confidence            8888764

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=98.32  E-value=5.8e-06  Score=60.73  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+...++++.+|++.|++.  .++++|++.|+.+++.++.    ++||+|+++...|++....+... ...|+
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~~~--av~~~sG~~Ai~~~l~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGTEA--AVATSSGMGAIAATLLTIL----KAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            33344344567899999999999854  6777778889999888876    79999999988888776665554 66899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++++++++
T Consensus       125 ~~~~vd~~  132 (391)
T TIGR01328       125 QVDFINMA  132 (391)
T ss_pred             EEEEECCC
Confidence            99998875

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PLN02483 serine palmitoyltransferase

Probab=98.31  E-value=3.6e-06  Score=63.51  Aligned_cols=73  Identities=16%  Similarity=0.317  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ...+...++++.+|+++|. ++.|+|++|... +..++.++.    ++||.|++++..|+++....   +..|++++.+|
T Consensus       143 g~~~~~~ele~~lA~~~g~-~~ai~~~~G~~a-n~~~i~al~----~~Gd~Vi~d~~~h~s~~~~~---~~~Ga~v~~~~  213 (489)
T PLN02483        143 GTTKLHRELEELVARFVGK-PAAIVFGMGYAT-NSTIIPALI----GKGGLIISDSLNHNSIVNGA---RGSGATIRVFQ  213 (489)
T ss_pred             CCcHHHHHHHHHHHHHhCC-CcEEEECCHHHH-HHHHHHHhC----CCCCEEEEcchhhHHHHHHH---HHcCCeEEEEe
Confidence            3456889999999999994 678888887544 445666665    89999999999999977654   45799999998


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      .+
T Consensus       214 ~~  215 (489)
T PLN02483        214 HN  215 (489)
T ss_pred             CC
Confidence            65

>PRK08354 putative aminotransferase; Provisional

Probab=98.30  E-value=6e-06  Score=58.62  Aligned_cols=67  Identities=16%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...+|+++|++++   ++|++|+|+++++.+++.. .    .+||+|++....|+.+....   +..|++++.+++|.
T Consensus        42 ~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~-~----~~gd~vlv~~P~y~~~~~~~---~~~g~~~~~~~~d~  108 (311)
T PRK08354         42 YEWLEEEFSKLFG---EPIVITAGITEALYLIGIL-A----LRDRKVIIPRHTYGEYERVA---RFFAARIIKGPNDP  108 (311)
T ss_pred             hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHh-h----CCCCeEEEeCCCcHHHHHHH---HHcCCEEeecCCCH
Confidence            4568999999987   5899999999999988743 3    48999998776666665444   55788888877653

>PLN02672 methionine S-methyltransferase

Probab=98.29  E-value=8.8e-06  Score=66.20  Aligned_cols=71  Identities=8%  Similarity=-0.057  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhCCCC---CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         27 VEDARQEIATLINCDP---KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~---~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ...+++.+++..|.+.   ++|++|+|+++++..+++++.    ++||.|++....|+.+....   +..|++++.+|++
T Consensus       736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl----~pGD~VLVp~PtY~~Y~~~a---~~~Ga~vv~Vpl~  808 (1082)
T PLN02672        736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV----QEGGTLCFPAGSNGTYVSAA---KFLKANFRRIPTK  808 (1082)
T ss_pred             HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc----CCCCEEEEeCCChHHHHHHH---HHcCCEEEEEecc
Confidence            3556666666667644   489999999999999999887    89999998777777766554   4579999999997


Q ss_pred             C
Q psy17798        104 Q  104 (110)
Q Consensus       104 ~  104 (110)
                      +
T Consensus       809 ~  809 (1082)
T PLN02672        809 S  809 (1082)
T ss_pred             c
Confidence            4

>PRK05968 hypothetical protein; Provisional

Probab=98.28  E-value=7.2e-06  Score=60.20  Aligned_cols=76  Identities=11%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v  100 (110)
                      ...+...++++.+|+++|++ +.+++ ++++.|+..++.++.    ++||+||++...|++....+... +..|++++++
T Consensus        60 ~~~p~~~~le~~lA~l~g~~-~av~~-~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v  133 (389)
T PRK05968         60 GDNPTVRAFEEMLAKLEGAE-DARGF-ASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYV  133 (389)
T ss_pred             CCChhHHHHHHHHHHHhCCC-cEEEE-CCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEe
Confidence            33456889999999999985 34555 555679988887765    89999999999999877766544 6789999998


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      +.+
T Consensus       134 d~~  136 (389)
T PRK05968        134 DGR  136 (389)
T ss_pred             CCC
Confidence            764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=98.27  E-value=7.8e-06  Score=59.45  Aligned_cols=74  Identities=15%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC---------------EEEEcCCCChhHHHHHH
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK---------------HVITTQTEHKCVLDSCR   88 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~---------------~vl~~~~e~ps~~~~~~   88 (110)
                      .+..+++++.+|+++|++  ++++|+|+|+|+++++.++.    ++||               +|+++...++.+..++.
T Consensus        44 ~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al~----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~  117 (363)
T TIGR01437        44 KELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAVI----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVE  117 (363)
T ss_pred             HHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHHh----cCCCcchhhcccccccccceEEEECccchhcCCchH
Confidence            456788999999999874  78999999999999999986    6777               88886633333321222


Q ss_pred             -HHHhCCcEEEEecCC
Q psy17798         89 -ILEGEGFNVLGSNPG  103 (110)
Q Consensus        89 -~l~~~g~~v~~v~~~  103 (110)
                       .+...|+++++++.+
T Consensus       118 ~~~~~~g~~~v~v~~~  133 (363)
T TIGR01437       118 TMVRLGGGKVVEAGYA  133 (363)
T ss_pred             HHHHhcCCeEEEEcCC
Confidence             225578899888753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG0634|consensus

Probab=98.27  E-value=1.7e-06  Score=63.68  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CC--CC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         20 GWESEKAVEDARQEIATLIN----CD--PK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~----~~--~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      .+....++.+++..+.++.+    ..  .+ +|++|+|.|.++..+++.+.    ++||+|++   |.+++..++..++.
T Consensus        95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~----N~gd~vli---e~~ty~~AL~s~~a  167 (472)
T KOG0634|consen   95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI----NRGDHVLI---EEYTYPSALQSMEA  167 (472)
T ss_pred             ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh----cCCCceEE---ecccchHHHHhccc
Confidence            34455678888888888765    22  13 79999999999999999998    89999995   66777778888888


Q ss_pred             CCcEEEEecCCCCccc
Q psy17798         93 EGFNVLGSNPGQGGNF  108 (110)
Q Consensus        93 ~g~~v~~v~~~~~G~~  108 (110)
                      .|+.++.|++|++|++
T Consensus       168 ~gv~~ipv~md~~Gi~  183 (472)
T KOG0634|consen  168 LGVKIIPVKMDQDGID  183 (472)
T ss_pred             cCceEEeccccCCCCC
Confidence            9999999999999975

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=98.26  E-value=6.4e-06  Score=59.72  Aligned_cols=70  Identities=13%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      .+..+++++.++++++++ ++|++|+| ++++..+++++.    ++||+|++++..||++...+.   ..|+++..++.
T Consensus        86 ~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~gd~vi~~~~~~~~~~~~~~---~~~~~~~~~~~  155 (397)
T PRK06939         86 QDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKEDAIISDALNHASIIDGVR---LCKAKRYRYAN  155 (397)
T ss_pred             cHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCCCEEEEEhhhhHHHHHHHH---hcCCceEEeCC
Confidence            345678889999999965 78888888 778888887775    899999999999999876553   34666666654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.26  E-value=1.9e-05  Score=59.54  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH--HHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA--VKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i--~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      +....+.+.++++.+++++|++...+..++|+++.+..+  ++.+.   .++||    +|+++..+||++...+   +..
T Consensus       108 sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~---~~~Gd~~~~~Vlv~~~~hp~~~~~~---~~~  181 (481)
T PRK04366        108 VQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH---EARGDTKRTEVIVPDSAHGTNPASA---AMA  181 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh---hccCcCCCCEEEEcCCccHhHHHHH---HHc
Confidence            444567888999999999998754455555555554432  22222   24555    9999999999998764   457


Q ss_pred             CcEEEEecCCCCcccc
Q psy17798         94 GFNVLGSNPGQGGNFL  109 (110)
Q Consensus        94 g~~v~~v~~~~~G~~~  109 (110)
                      |++++.+|++++|.+|
T Consensus       182 G~~vv~v~~~~~~~~D  197 (481)
T PRK04366        182 GFKVVEIPSNEDGLVD  197 (481)
T ss_pred             CCEEEEeecCCCCCcC
Confidence            9999999998777654

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=98.26  E-value=5.6e-06  Score=60.73  Aligned_cols=78  Identities=9%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ++.......++++.+|++.+.+. .+++ +++++|+.+++.++.    ++||+|+++...|++....+..+ +..|++++
T Consensus        56 ~r~~~p~~~~Le~~lA~~~g~~~-~i~~-~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~  129 (388)
T PRK07811         56 ARTGNPTRTALEEQLAALEGGAY-GRAF-SSGMAATDCLLRAVL----RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYT  129 (388)
T ss_pred             cCCCCccHHHHHHHHHHHhCCCc-eEEe-CCHHHHHHHHHHHHh----CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEE
Confidence            33344678899999999999864 3555 556899999999986    89999999999999776665544 55688888


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .++..
T Consensus       130 ~~d~~  134 (388)
T PRK07811        130 PVDLS  134 (388)
T ss_pred             EeCCC
Confidence            87753

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.23  E-value=1.1e-05  Score=58.62  Aligned_cols=80  Identities=20%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-CcEEEe-CChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDP-KEIIFT-SGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      +....+.++++|+.+++++++++ .+|+|+ +|+|.+++.++.++.    .+ +.++++..+|.+....+..+...+.++
T Consensus        36 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~----~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~  110 (361)
T TIGR01366        36 QAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI----EK-KSLHLSFGEFSSKFAKAVKLAPWLGEP  110 (361)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc----cc-cccEEecCHHHHHHHHHHHhhhccCCc
Confidence            34567899999999999999954 589997 669999999999986    22 344555678877665555543222367


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      ..++.+.
T Consensus       111 ~~~~~~~  117 (361)
T TIGR01366       111 IIVTADP  117 (361)
T ss_pred             eEEecCC
Confidence            7776654

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.21  E-value=8.2e-06  Score=60.76  Aligned_cols=78  Identities=12%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~   98 (110)
                      ++...+....+.+.+|++.|+  +..++++|++.|+..++.++.    ++||+|+++...|++....+.. ++..|++++
T Consensus        59 ~r~~~p~~~~Le~~lA~leg~--~~al~~~sG~~Ai~~al~~ll----~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~  132 (431)
T PRK08248         59 TRIMNPTTDVFEKRIAALEGG--IGALAVSSGQAAITYSILNIA----SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVK  132 (431)
T ss_pred             ECCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEccCchhhHHHHHHHHHHhCCEEEE
Confidence            344445677889999999985  467889999999999988876    8999999999999887776655 477899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      +++++
T Consensus       133 ~vd~~  137 (431)
T PRK08248        133 FVDPS  137 (431)
T ss_pred             EECCC
Confidence            99874

>KOG0257|consensus

Probab=98.20  E-value=8.2e-06  Score=59.86  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         20 GWESEKAVEDARQEIATLINC--D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~--~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ++...+....+++.++.++|.  + .+||++|.|+.+++...+.++.    .+||+|++-+.-++++....   +-.|..
T Consensus        68 ~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~~GDeVii~eP~fd~Y~~~~---~maG~t  140 (420)
T KOG0257|consen   68 GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----NPGDEVIVFEPFFDCYIPQV---VMAGGT  140 (420)
T ss_pred             cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----CCCCEEEEecCcchhhhhHH---hhcCCc
Confidence            444455566666666776663  3 5789999999999999998887    89999999988888887655   346888


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      .++||+.
T Consensus       141 pv~v~~~  147 (420)
T KOG0257|consen  141 PVFVPLK  147 (420)
T ss_pred             ceeeccc
Confidence            8888887

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=98.20  E-value=1.1e-05  Score=59.48  Aligned_cols=78  Identities=8%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~   98 (110)
                      ++......+++.+.+|++.+++  +.+++++++.|+..++.++.    ++||+|+++...|++....+.. ++..|++++
T Consensus        65 ~r~~~p~~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~  138 (403)
T PRK07810         65 SRYGNPTVSMFEERLRLIEGAE--ACFATASGMSAVFTALGALL----GAGDRLVAARSLFGSCFVVCNEILPRWGVETV  138 (403)
T ss_pred             eCCCCchHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHHh----CCCCEEEEccCCcchHHHHHHHHHHHcCcEEE
Confidence            3334456788999999999964  77888888899988888876    8999999998888666655554 467899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      +++.+
T Consensus       139 ~vd~~  143 (403)
T PRK07810        139 FVDGE  143 (403)
T ss_pred             EECCC
Confidence            99764

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=98.19  E-value=1.2e-05  Score=57.43  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..+++|+.++++++. +++|++++|+++.+ .++.++.    ++||+|+++..+|+++...+   +..|++++.++.
T Consensus        61 ~~~~~l~~~la~~~~~-~~~i~~~~G~~~~~-~~l~~~~----~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~  129 (360)
T TIGR00858        61 PLHEELEEELAEWKGT-EAALLFSSGYLANV-GVISALV----GKGDLILSDALNHASLIDGC---RLSGARVRRYRH  129 (360)
T ss_pred             HHHHHHHHHHHHHhCC-CCEEEECchHHHHH-HHHHHhC----CCCCEEEEEccccHHHHHHH---HhcCCceEEecC
Confidence            4577899999999985 57888888865544 4666654    79999999999999887655   346888887764

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=98.17  E-value=9.9e-06  Score=58.93  Aligned_cols=80  Identities=11%  Similarity=0.019  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++.......++++.+|++.|++.  .++++|+++|+..++ ++.    ++||+||++...|++....+... +..|+
T Consensus        44 ~~y~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         44 FDYSRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLF----RSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHh----CCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            44555555678899999999999865  366777788998765 444    79999999999998876655543 66899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++++++.+
T Consensus       117 ~v~~vd~~  124 (366)
T PRK08247        117 RFVYVNTA  124 (366)
T ss_pred             eEEEECCC
Confidence            99998864

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.15  E-value=2.8e-05  Score=56.98  Aligned_cols=76  Identities=14%  Similarity=0.045  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++-+.+|+++|+.  ..+.++|+|.|+.++++++.   ..+||+||++...+.+...+..   ..|+++++|.+|++
T Consensus        35 ~v~~FE~~~ae~~G~k--~ava~~sgT~AL~laL~al~---ig~GDeVI~ps~TfvATan~i~---~~Ga~PVFvDid~~  106 (374)
T COG0399          35 FVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALA---IGPGDEVIVPSFTFVATANAVL---LVGAKPVFVDIDPD  106 (374)
T ss_pred             HHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhcC---CCCCCEEEecCCchHHHHHHHH---HcCCeEEEEecCCc
Confidence            4556677899999874  68999999999999999776   3899999999999988776653   47999999999964


Q ss_pred             -cccc
Q psy17798        106 -GNFL  109 (110)
Q Consensus       106 -G~~~  109 (110)
                       +.+|
T Consensus       107 T~nid  111 (374)
T COG0399         107 TLNID  111 (374)
T ss_pred             ccCCC
Confidence             6555

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.13  E-value=2.2e-05  Score=57.98  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~   98 (110)
                      ++...+..+.+++.++.+-+. ++. ++++++++|++.++.++.    ++||+||++...|+++...+.. ++..|++++
T Consensus        59 sR~gnPt~~~Le~~la~le~~-~~~-v~~sSG~aAi~~~l~all----~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~  132 (395)
T PRK05967         59 GTRGTPTTDALCKAIDALEGS-AGT-ILVPSGLAAVTVPFLGFL----SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVE  132 (395)
T ss_pred             CCCCChHHHHHHHHHHHHhCC-CCE-EEECcHHHHHHHHHHHhc----CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEE
Confidence            344455666777777766543 334 555557899999998886    8999999999999988766543 477899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      +++.+
T Consensus       133 ~vd~~  137 (395)
T PRK05967        133 YYDPE  137 (395)
T ss_pred             EeCCC
Confidence            98764

>PLN02242 methionine gamma-lyase

Probab=98.13  E-value=1.8e-05  Score=58.66  Aligned_cols=81  Identities=10%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH--HhCC
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL--EGEG   94 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l--~~~g   94 (110)
                      |..++...+..+++++.+|++.|+.  .+++++|+++|+..++.++.    ++||+|+++...|+.+...+...  +..|
T Consensus        68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~--~~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         68 YIYSRHFNPTVLNLGRQMAALEGTE--AAYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            3445545678889999999999874  46789999999999999887    89999999888888776655433  3378


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++++.++.+
T Consensus       142 ~~~~~~d~~  150 (418)
T PLN02242        142 ITTTFVDIT  150 (418)
T ss_pred             ceEEEcCCC
Confidence            888887764

>PRK06767 methionine gamma-lyase; Provisional

Probab=98.10  E-value=2.2e-05  Score=57.55  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      .++...+...++++.+|++.|++ +.| ++++++.++..++.++.    ++||+||++...|++....+..+ +..|+++
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~~-~al-~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~  128 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGGE-EAL-AFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMITH  128 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCCC-cEE-EECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEE
Confidence            33334456788999999999963 444 45555678988888876    89999999999998887776665 5568888


Q ss_pred             EEecCC
Q psy17798         98 LGSNPG  103 (110)
Q Consensus        98 ~~v~~~  103 (110)
                      ..++..
T Consensus       129 ~~~~~~  134 (386)
T PRK06767        129 SFCDME  134 (386)
T ss_pred             EEeCCC
Confidence            777653

>PRK06434 cystathionine gamma-lyase; Validated

Probab=98.10  E-value=2.4e-05  Score=57.49  Aligned_cols=79  Identities=14%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH-HHHHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC-RILEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~-~~l~~~g~~v~   98 (110)
                      ++...+..+++-+.+|++.+++  ..+.+++++.|+++++.++.    ++||+||++...|......+ ..+...|++++
T Consensus        59 ~r~~~P~~~~lE~~la~leg~~--~av~~sSG~aAi~~al~all----~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~  132 (384)
T PRK06434         59 TRWGNPTVQAFEEKYAVLENAE--HALSFSSGMGAITSAILSLI----KKGKRILSISDLYGQTFYFFNKVLKTLGIHVD  132 (384)
T ss_pred             eCCCChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHHhcCcEEE
Confidence            3334566777888899998874  46777777899999999876    89999999766555555444 33467899999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      ++++++
T Consensus       133 fvd~~~  138 (384)
T PRK06434        133 YIDTDR  138 (384)
T ss_pred             EECCCC
Confidence            999875

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.10  E-value=3.4e-05  Score=57.59  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v   97 (110)
                      .++...+..+++.+.+|++.|++.  .+++++++.|+..++.++.    ++||+||++..+|.+....+.. +++.|+++
T Consensus        63 Ysr~~~p~~~~Le~~lA~l~g~~~--av~~sSG~aAi~~al~all----~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v  136 (436)
T PRK07812         63 YTRIMNPTQDVVEQRIAALEGGVA--ALLLASGQAAETFAILNLA----GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV  136 (436)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHh----CCCCEEEEeCCcchHHHHHHHHHhhcCeEEE
Confidence            344344567789999999998753  6777788889999998876    8999999999999888766655 46689999


Q ss_pred             EEec
Q psy17798         98 LGSN  101 (110)
Q Consensus        98 ~~v~  101 (110)
                      +.++
T Consensus       137 ~~vd  140 (436)
T PRK07812        137 SFVE  140 (436)
T ss_pred             EEEC
Confidence            9885

>KOG0256|consensus

Probab=98.10  E-value=5.1e-06  Score=61.00  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         23 SEKAVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      ...++...|+++|+++.        -+|+++++|.|+|.++.++...|.    .|||..+++..=||++..-.+  =+.|
T Consensus       119 dy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa----dpgdafLvPtPyY~gfdrdl~--~rTg  192 (471)
T KOG0256|consen  119 DYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA----DPGDAFLVPTPYYPGFDRDLR--WRTG  192 (471)
T ss_pred             cccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc----CCCceeeecCCCCCcccccce--eccC
Confidence            34678899999999983        379999999999999999999988    899999999888888754332  1469


Q ss_pred             cEEEEecCCC-Cc
Q psy17798         95 FNVLGSNPGQ-GG  106 (110)
Q Consensus        95 ~~v~~v~~~~-~G  106 (110)
                      +++++|.+++ +|
T Consensus       193 veivpv~c~Ss~~  205 (471)
T KOG0256|consen  193 VEIVPVHCSSSNG  205 (471)
T ss_pred             ceEEEEEeecCCC
Confidence            9999998875 44

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=98.08  E-value=3e-05  Score=55.93  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ....+++++.++++++. ++.|++++ +++++..++.++.    ++||+|++++.+|+++...+.   ..|++++.+|..
T Consensus        83 ~~~~~~l~~~la~~~~~-~~~i~~~~-g~~~~~~~l~~~~----~~gd~V~~~~~~~~~~~~~~~---~~g~~~~~~~~~  153 (385)
T PRK05958         83 SPAHEALEEELAEWFGA-ERALLFSS-GYAANLAVLTALA----GKGDLIVSDKLNHASLIDGAR---LSRARVRRYPHN  153 (385)
T ss_pred             cHHHHHHHHHHHHHhCC-CcEEEECc-HHHHHHHHHHHhC----CCCCEEEEeCccCHHHHHHHH---hcCCceEEeCCC
Confidence            34578899999999984 45555555 5566655666654    899999999999999886653   368888888753

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.08  E-value=2.3e-05  Score=58.31  Aligned_cols=74  Identities=7%  Similarity=0.067  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~  102 (110)
                      ......+.+.+|++.+.+  ..+++++++.|+.+++.++.    ++||+||++...|++....+... +..|++++++++
T Consensus        62 ~p~~~~le~~lA~l~g~~--~al~~~SG~~Ai~~al~all----~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         62 NPTNAVLEERVAALEGGT--AALAVASGHAAQFLVFHTLL----QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             CccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            445678899999999875  37788899999999998876    89999999999999887766554 678999999886


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       136 ~  136 (427)
T PRK05994        136 D  136 (427)
T ss_pred             C
Confidence            4

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=98.07  E-value=2e-05  Score=58.03  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ++...+...++++.+|+++|+++.  +++++++.++..++.++.    ++||+|+++...|+++...+..+ +..|++++
T Consensus        60 ~r~~~p~~~~Le~~lA~l~G~~~~--~~~~sG~~Ai~~~l~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~  133 (398)
T PRK07504         60 SRYSNPTVDMFEKRMCALEGAEDA--RATASGMAAVTAAILCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIEST  133 (398)
T ss_pred             ecCCCchHHHHHHHHHHHhCCCee--eEecCHHHHHHHHHHHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEE
Confidence            333345678999999999998754  346677888877776655    89999999999999887776554 56789888


Q ss_pred             Eec
Q psy17798         99 GSN  101 (110)
Q Consensus        99 ~v~  101 (110)
                      .++
T Consensus       134 ~vd  136 (398)
T PRK07504        134 LVD  136 (398)
T ss_pred             EEC
Confidence            876

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.07  E-value=4.5e-05  Score=58.15  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCC-----------C--CcEEEeCChHHHHHHHHHHhHHhhcc----------------
Q psy17798         18 AYGWESEKAVEDARQEIATLINCD-----------P--KEIIFTSGATESNNIAVKGVARFYKE----------------   68 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~-----------~--~~i~~t~gat~a~~~i~~~l~~~~~~----------------   68 (110)
                      ..+...+..-.++-+.++++++..           +  ..-+||+|+|+|+-..+.+.....+.                
T Consensus       122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~  201 (522)
T TIGR03799       122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA  201 (522)
T ss_pred             ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence            334445556666777777777421           1  23689999999998877654322111                


Q ss_pred             ------CCCEEEEcCCCChhHHHHHHHHHhCCc---EEEEecCCCCcccc
Q psy17798         69 ------KKKHVITTQTEHKCVLDSCRILEGEGF---NVLGSNPGQGGNFL  109 (110)
Q Consensus        69 ------~g~~vl~~~~e~ps~~~~~~~l~~~g~---~v~~v~~~~~G~~~  109 (110)
                            ++..|+++..+|+|+..+...+   |+   +++.||+|++|.+|
T Consensus       202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d  248 (522)
T TIGR03799       202 LKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRID  248 (522)
T ss_pred             hhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCC
Confidence                  2457999999999998766554   55   79999999999876

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK09275 aspartate aminotransferase; Provisional

Probab=98.05  E-value=3.5e-05  Score=58.76  Aligned_cols=79  Identities=9%  Similarity=0.063  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHH-HhC----C---C--CCcEEEeCChHHHHHHHHHHhHH-hhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         25 KAVEDARQEIAT-LIN----C---D--PKEIIFTSGATESNNIAVKGVAR-FYKEKKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        25 ~~~~~~R~~la~-~l~----~---~--~~~i~~t~gat~a~~~i~~~l~~-~~~~~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      .++.++|+++++ ++.    .   .  +++|++|+|+++|+..++.++.. ..+++||+|++...-|+.+..... +...
T Consensus       134 ~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~-l~g~  212 (527)
T PRK09275        134 DRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE-LPRY  212 (527)
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH-HcCC
Confidence            455688888887 321    1   2  24899999999999999987421 113899999998877777654432 2234


Q ss_pred             CcEEEEecCCC
Q psy17798         94 GFNVLGSNPGQ  104 (110)
Q Consensus        94 g~~v~~v~~~~  104 (110)
                      |++++.++.++
T Consensus       213 ~~~~v~v~~~~  223 (527)
T PRK09275        213 DLEVVHINADE  223 (527)
T ss_pred             CeEEEEeecCc
Confidence            66777777654

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.03  E-value=3.7e-05  Score=57.35  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++|++++++++.  +++++|+|++.|+.+++.++.    ++||.| +++.-++++....   ...|++++.+++++
T Consensus        53 ~g~~~Leeaia~~~g~--~~vv~t~~Gt~Al~la~~al~----~pGD~V-~~~~~f~~~~~~i---~~~Ga~pv~v~i~~  122 (431)
T cd00617          53 KSFYDLEDAVQDLFGF--KHIIPTHQGRGAENILFSILL----KPGRTV-PSNMHFDTTRGHI---EANGAVPVDLVIDE  122 (431)
T ss_pred             CCHHHHHHHHHHHHCC--CeEEEcCCHHHHHHHHHHHhC----CCCCEE-ccCCcccchHHHH---HhCCCEeEEEeccc
Confidence            3578999999999987  479999999999999999886    899987 4665566654433   45799999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=98.02  E-value=3.8e-05  Score=56.31  Aligned_cols=80  Identities=10%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+....+++.+|++.|+.. .+++ ++++.|+..++. +.    ++||+|++++..|++....+... +..|+
T Consensus        42 ~~y~r~~~p~~~~Le~~la~l~g~~~-al~~-~SG~~Al~~~l~-~l----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi  114 (380)
T PRK06176         42 YEYSRSGNPTRFALEELIADLEGGVK-GFAF-ASGLAGIHAVFS-LF----QSGDHVLLGDDVYGGTFRLFDKVLVKNGL  114 (380)
T ss_pred             CcccCCCChhHHHHHHHHHHHhCCCC-EEEE-CCHHHHHHHHHH-Hc----CCCCEEEEcCCChhHHHHHHHHHHHhcCe
Confidence            45555556678899999999998643 3555 555668886664 43    79999999999999887777654 67899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.++.+
T Consensus       115 ~v~~vd~~  122 (380)
T PRK06176        115 SCTIIDTS  122 (380)
T ss_pred             EEEEcCCC
Confidence            99988764

>PRK04311 selenocysteine synthase; Provisional

Probab=98.01  E-value=6.5e-05  Score=56.54  Aligned_cols=71  Identities=10%  Similarity=0.152  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH----HHHHHHHHhCCcEEEEe
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV----LDSCRILEGEGFNVLGS  100 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~----~~~~~~l~~~g~~v~~v  100 (110)
                      ..++.+++.+|+++|+.  ..++++|++.|+++++.++     .+|++||++..||+++    ..+ ..++..|++++++
T Consensus       127 ~r~~~~e~~lA~l~Gae--~a~vv~sgtaAl~l~l~~l-----~~GdeVIvs~~e~~~~ggs~~i~-~~~~~~G~~l~~v  198 (464)
T PRK04311        127 SRDRALAALLCALTGAE--DALVVNNNAAAVLLALNAL-----AAGKEVIVSRGELVEIGGAFRIP-DVMRQAGARLVEV  198 (464)
T ss_pred             hHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHh-----CCCCEEEEcchhhhhcCcchhhH-HHHHHCCcEEEEE
Confidence            45789999999999985  5778888889999988764     5899999999888743    222 2346789999999


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      +.+
T Consensus       199 ~~~  201 (464)
T PRK04311        199 GTT  201 (464)
T ss_pred             CCC
Confidence            864

>PRK07671 cystathionine beta-lyase; Provisional

Probab=98.00  E-value=4.3e-05  Score=55.94  Aligned_cols=80  Identities=15%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      +..++...+...++++.+|++.|++. .+++.+ ++.++..++ .+.    ++||+|+++...|++....+.. ++..|+
T Consensus        42 ~~y~r~~~p~~~~Le~~lA~l~g~~~-~~~~~s-G~aai~~~~-~~l----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         42 YEYSRTGNPTRAALEELIAVLEGGHA-GFAFGS-GMAAITAVM-MLF----SSGDHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             CCcCCCCChHHHHHHHHHHHHhCCCc-eEEeCC-HHHHHHHHH-HHh----CCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence            44555556778899999999999753 455445 556777654 343    7999999999999866665554 367899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.++.+
T Consensus       115 ~v~~v~~~  122 (377)
T PRK07671        115 EHTFVDTS  122 (377)
T ss_pred             EEEEECCC
Confidence            99998754

>PRK07049 methionine gamma-lyase; Validated

Probab=97.98  E-value=4.6e-05  Score=56.70  Aligned_cols=76  Identities=8%  Similarity=0.008  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~   98 (110)
                      ++........+++.||++.++  +++++++|++.|+..++.++.    ++||+|+++..-|+.+...... ++..|++++
T Consensus        78 ~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~al~----~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v  151 (427)
T PRK07049         78 SRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLAFV----RPGDVILHSQPLYGGTETLLAKTFRNFGVGAV  151 (427)
T ss_pred             cCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEE
Confidence            444445677899999999985  468888888899999998887    8999999988888887666443 466799866


Q ss_pred             Eec
Q psy17798         99 GSN  101 (110)
Q Consensus        99 ~v~  101 (110)
                      .++
T Consensus       152 ~~~  154 (427)
T PRK07049        152 GFA  154 (427)
T ss_pred             EEe
Confidence            665

>PRK10534 L-threonine aldolase; Provisional

Probab=97.97  E-value=4.2e-05  Score=54.49  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .....++|+++|+++|.++.  ++++|+++++.+.+.++.    .+||+|+++...|.............+++++.++++
T Consensus        33 ~~~~~~L~~~la~~~g~~~~--~v~~~g~~a~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (333)
T PRK10534         33 DPTVNALQDYAAELSGKEAA--LFLPTGTQANLVALLSHC----ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA  106 (333)
T ss_pred             CHHHHHHHHHHHHHhCCCeE--EEeCchHHHHHHHHHHhc----CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC
Confidence            34678999999999998654  577777888777777665    789999976555543221110111123677888877


Q ss_pred             CCcccc
Q psy17798        104 QGGNFL  109 (110)
Q Consensus       104 ~~G~~~  109 (110)
                      +++.+|
T Consensus       107 ~~~~~d  112 (333)
T PRK10534        107 ADGTLP  112 (333)
T ss_pred             CCCCCC
Confidence            665543

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.96  E-value=0.00016  Score=54.08  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~v~~  102 (110)
                      .+....+.+.+|++.++.  ..+.++|++.|+.+++.++.    ++||+||++...|.+....... +...|++++++..
T Consensus        60 nPtv~~lE~~la~leg~~--~av~~~SG~aAi~~al~all----~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGV--GAVATASGQAAIMLAVLNIC----SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             CcHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            356778889999998874  47889999999999998876    8999999999888877766555 4778999999875

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.95  E-value=0.00018  Score=52.68  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChHHHHHHHHHHhHHhhc----c------CCCEEEEcCCCC
Q psy17798         18 AYGWESEKAVEDARQEIATLINCDP-------KEIIFTSGATESNNIAVKGVARFYK----E------KKKHVITTQTEH   80 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~la~~l~~~~-------~~i~~t~gat~a~~~i~~~l~~~~~----~------~g~~vl~~~~e~   80 (110)
                      ..+........++-+.+++++|.+.       ..=+||+|+|+++...+.+......    .      +.-.|++++..|
T Consensus        72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH  151 (373)
T PF00282_consen   72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH  151 (373)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred             ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence            3344566677789999999999762       3478999999999887765532211    1      223788999899


Q ss_pred             hhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .|+..+...   .|+.++.||+|++|.+|
T Consensus       152 ~S~~Kaa~~---lGlg~~~I~~~~~~~md  177 (373)
T PF00282_consen  152 YSIEKAARI---LGLGVRKIPTDEDGRMD  177 (373)
T ss_dssp             THHHHHHHH---TTSEEEEE-BBTTSSB-
T ss_pred             cHHHHhcce---eeeEEEEecCCcchhhh
Confidence            999877755   58889999999988765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=97.94  E-value=0.00011  Score=56.04  Aligned_cols=60  Identities=12%  Similarity=0.106  Sum_probs=44.9

Q ss_pred             cEEEeCChHHHHHHHHHHhHH-hhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         44 EIIFTSGATESNNIAVKGVAR-FYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        44 ~i~~t~gat~a~~~i~~~l~~-~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +|++|+|+++|+..++.++.. ..+.+||+|++...-||.+..... +...|++++.++.++
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-l~~~g~~vv~i~~~~  217 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-LPRYDFEVVRIKADE  217 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-HhcCCcEEEEeeccc
Confidence            899999999999999887421 113899999988877777665432 234578888888764

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=97.93  E-value=0.00013  Score=53.56  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .....++++.+|++++.+ +.++|++|.+... .++.++.    ++||+|++++..|+++...+ .+  .++++++++.+
T Consensus        42 ~~~~~~LE~~lA~~~g~e-~al~~~sG~~a~~-~~i~~l~----~~GD~Vl~~~~~h~s~~~~~-~l--~~~~~~~~~~~  112 (392)
T PLN03227         42 IDAHLELEQCMAEFLGTE-SAILYSDGASTTS-STVAAFA----KRGDLLVVDRGVNEALLVGV-SL--SRANVRWFRHN  112 (392)
T ss_pred             hHHHHHHHHHHHHHhCCC-cEEEecCcHHHHH-HHHHHhC----CCCCEEEEeccccHHHHHHH-HH--cCCeEEEeCCC
Confidence            347889999999999986 7788988888777 4555555    89999999999999987665 22  35677766654

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=97.92  E-value=8.7e-05  Score=54.03  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=53.9

Q ss_pred             CCCCcCChHHHHH---HHHHHHHHHHHHHHhCC-CCCcEEEe-CChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798         11 NPHSRTHAYGWES---EKAVEDARQEIATLINC-DPKEIIFT-SGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus        11 n~~~~~~~~~~~~---~~~~~~~R~~la~~l~~-~~~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      |.++|.+..+...   .+.++++|+.+++++++ ++.+|+|+ +++|.++..++..+.    .+|+++++.  ....+-.
T Consensus        31 ~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~----~~g~~~l~i--~~G~fg~  104 (360)
T PRK05355         31 GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL----GGGKKADYV--DTGSWSK  104 (360)
T ss_pred             cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC----CCCCeEEEE--ECCHHHH
Confidence            5555555444433   48999999999999998 34567777 556667777777776    677665543  2233333


Q ss_pred             HHHHH-HhCCcEEEEecCC
Q psy17798         86 SCRIL-EGEGFNVLGSNPG  103 (110)
Q Consensus        86 ~~~~l-~~~g~~v~~v~~~  103 (110)
                      -|..+ ++.|.. ..++.+
T Consensus       105 r~~~~a~~~g~~-~~~~~~  122 (360)
T PRK05355        105 KAIKEAKKYGEV-NVAASS  122 (360)
T ss_pred             HHHHHHHHhCCc-eEEecc
Confidence            33333 667864 555544

>PRK08114 cystathionine beta-lyase; Provisional

Probab=97.90  E-value=9.4e-05  Score=54.64  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      |..+|...+....+-+.||++-++  +..+++++++.|++.++.++.    ++||+||++...|.+....+.. +++.|+
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~--~~a~~~~SGmaAi~~~~~~ll----~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi  127 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGG--AGCALYPCGAAAVANAILAFV----EQGDHVLMTGTAYEPTQDFCSKILSKLGV  127 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCC--CeEEEEhHHHHHHHHHHHHHc----CCCCEEEEeCCCcHHHHHHHHHHHHhcCc
Confidence            444555556667778888887664  467788889999999998876    8999999999999887777654 477899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.+++..
T Consensus       128 ~v~~vd~~  135 (395)
T PRK08114        128 TTTWFDPL  135 (395)
T ss_pred             EEEEECCC
Confidence            99998753

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.90  E-value=6.3e-05  Score=55.94  Aligned_cols=81  Identities=10%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+...++.+.+|++.++  +..++++++++|+..++.++.    ++||+|+++...|++....+... +..|+
T Consensus        50 ~~y~r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~----~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi  123 (425)
T PRK06084         50 NIYTRIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIA----EAGDNIVSVAKLYGGTYNLLAHTLPRIGI  123 (425)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHhccccee
Confidence            444555556778999999999985  346677888899999999887    79999999988888666555443 44688


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.+++.+
T Consensus       124 ~v~~~d~~  131 (425)
T PRK06084        124 ETRFAAHD  131 (425)
T ss_pred             EEEEECCC
Confidence            88877643

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=97.87  E-value=0.00015  Score=54.50  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH----HHHHHHHHhCCcEEEEe
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV----LDSCRILEGEGFNVLGS  100 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~----~~~~~~l~~~g~~v~~v  100 (110)
                      ..++.+++.+|+++|++.  .++++|++.|+++++.++     .+||+||++..||+.+    .. ...++..|++++++
T Consensus       122 ~r~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l-----~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v  193 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL-----AKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEV  193 (454)
T ss_pred             hHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh-----CCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEe
Confidence            457899999999999864  455677788898888653     6899999999997543    33 23456789999999


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      +.+
T Consensus       194 ~~~  196 (454)
T TIGR00474       194 GTT  196 (454)
T ss_pred             CCC
Confidence            764

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=97.77  E-value=0.00014  Score=53.46  Aligned_cols=82  Identities=15%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH--HHHHhHHhhc--------cCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNI--AVKGVARFYK--------EKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~--i~~~l~~~~~--------~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      ..+++.++|+..|++|++++++|++..|++--+..  +.+++.....        .+.-++|++   -|.|.+.+...+.
T Consensus        67 ~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP---vPGYDRHFai~E~  143 (425)
T PF12897_consen   67 GLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP---VPGYDRHFAITEH  143 (425)
T ss_dssp             -SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE---ES--HHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec---CCCchHHHHHHHh
Confidence            34689999999999999999999998887544332  2222221100        123356764   3888888888899


Q ss_pred             CCcEEEEecCCCCcc
Q psy17798         93 EGFNVLGSNPGQGGN  107 (110)
Q Consensus        93 ~g~~v~~v~~~~~G~  107 (110)
                      .|++.+.||++++|-
T Consensus       144 ~Giemi~VpM~~dGP  158 (425)
T PF12897_consen  144 FGIEMIPVPMTEDGP  158 (425)
T ss_dssp             CT-EEEEEEEETTEE
T ss_pred             hCcEEEecCCCCCCC
Confidence            999999999999884

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=97.73  E-value=0.00039  Score=51.08  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +...++.+.+|++++. ++.++|++| ++|+..++..+..  ..+++.|++...+|+++...+..   .|.+++.+|.
T Consensus        90 ~~~~~le~~la~~~g~-~~~~~~~SG-~~An~~ai~~l~~--~~~g~~I~~~~~~H~s~~~~~~~---~g~~~~~~~~  160 (406)
T PRK13393         90 HYHVLLEAELADLHGK-EAALLFTSG-YVSNWAALSTLGS--RLPGCVILSDELNHASMIEGIRH---SRAEKRIFRH  160 (406)
T ss_pred             HHHHHHHHHHHHHhCC-CcEEEeCCc-HHHHHHHHHHhhc--CCCCCEEEEccchhHHHHHHHHH---cCCeEEEeCC
Confidence            3578899999999986 345556655 5688878776652  12788888888999998877743   4677777664

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=97.72  E-value=0.0002  Score=53.22  Aligned_cols=71  Identities=18%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+.++.+.+|+.+|++ ...++|+|+|.++..++.++.    ++||.|++..-.|-|+..++..   .|++++++++.
T Consensus        66 G~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~----~~gd~VLv~RN~HkSv~~alil---~ga~Pvyi~p~  136 (417)
T PF01276_consen   66 GIIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALC----RPGDKVLVDRNCHKSVYNALIL---SGAIPVYIPPE  136 (417)
T ss_dssp             THHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHT----TTTCEEEEETT--HHHHHHHHH---HTEEEEEEEEE
T ss_pred             cHHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHHHHH---cCCeEEEecCC
Confidence            36788999999999986 458888999999999999988    8999999999999999876543   58999998765

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.69  E-value=0.00053  Score=55.72  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChH-HHHH---HHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhC
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGAT-ESNN---IAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat-~a~~---~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ...+.+.++-+.+++++|.+  ++.+.++++ +|..   ++++.+.+   ++|+    +|+++...|+++...+   +..
T Consensus       539 G~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~agL~a~r~~~~---~~G~~~r~~vlis~~aH~snp~sa---~~~  610 (954)
T PRK05367        539 GYRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAGLLAIRAYHE---SRGEGHRDVCLIPSSAHGTNPASA---VMA  610 (954)
T ss_pred             HHHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHHHHHHHHHhh---ccCCCCCCEEEEEchhhhhhHHHH---HHC
Confidence            35677888889999999975  688887655 3332   23333321   3444    6999999999988765   446


Q ss_pred             CcEEEEecCCCCcccc
Q psy17798         94 GFNVLGSNPGQGGNFL  109 (110)
Q Consensus        94 g~~v~~v~~~~~G~~~  109 (110)
                      |++++++|+|++|.+|
T Consensus       611 G~~vv~v~~d~~G~iD  626 (954)
T PRK05367        611 GMKVVVVACDENGNID  626 (954)
T ss_pred             CCEEEEECCCCCCCcC
Confidence            9999999999888765

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00046  Score=52.00  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=70.5

Q ss_pred             hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhcc-C---------CCE
Q psy17798          4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKE-K---------KKH   72 (110)
Q Consensus         4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~-~---------g~~   72 (110)
                      ++....++++.  ++   .+...-.++-..++++++++ .-.-.||+|+|||+.+.+.+..+...+ .         ..+
T Consensus        85 ~~~~nl~d~~~--~p---~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~  159 (460)
T COG0076          85 ALNKNLGDPDE--SP---AAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPN  159 (460)
T ss_pred             HHhhcCCCccc--Ch---hHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCe
Confidence            44445555553  33   34456667888899999984 445799999999999888777543320 1         237


Q ss_pred             EEEcCCCChhHHHHHHHHHhCCcEEEEecCCC-Ccccc
Q psy17798         73 VITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        73 vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~-~G~~~  109 (110)
                      |+++..-|.|+..+...+   |++++.+|+++ +..+|
T Consensus       160 ii~s~~aH~s~~Kaa~~l---G~~~~~v~~~~~~~~id  194 (460)
T COG0076         160 IVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRID  194 (460)
T ss_pred             EEecCcchhHHHHHHHHh---CCCceeEEeccCccccC
Confidence            999999999998877654   89999999887 56554

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=97.65  E-value=0.00047  Score=49.95  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .+..+++++.++++++. ++.|++++| ++++..++.++.    ++||.|+++...|+++...+.   ..|+++..++
T Consensus        77 ~~l~~~l~~~l~~~~g~-~~~i~~~sG-~~a~~~a~~~~~----~~gd~vi~~~~~~~~~~~~~~---~~g~~~~~~~  145 (385)
T TIGR01825        77 LRLHEELEEKLAKFKKT-EAALVFQSG-FNTNQGVLSALL----RKGDIVLSDELNHASIIDGLR---LTKATKKIYK  145 (385)
T ss_pred             cHHHHHHHHHHHHHhCC-CcEEEECcH-HHHHHHHHHHhC----CCCCEEEEEccccHHHHHHHH---hcCCceEEeC
Confidence            34567788888888885 467888888 556666777765    799999999999999876553   2466665553

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=97.63  E-value=0.00061  Score=50.08  Aligned_cols=70  Identities=17%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ...++++.+|+++|. ++.|+|++| ++++..++..+..  ..+|+.|+++..+|+++...+   +..|+++..++.
T Consensus        92 ~~~~Le~~la~~~g~-~~~i~~~sG-~~a~~~~i~~l~~--~~~g~~vi~~~~~h~s~~~~~---~~~g~~~~~~~~  161 (410)
T PRK13392         92 PHVLLERELADLHGK-ESALLFTSG-YVSNDAALSTLGK--LLPGCVILSDALNHASMIEGI---RRSGAEKQVFRH  161 (410)
T ss_pred             HHHHHHHHHHHHhCC-CCEEEECcH-HHHHHHHHHHHhc--CCCCCEEEEehhhhHHHHHHH---HHcCCeEEEEeC
Confidence            467899999999995 567888777 4677777776652  147899998888898876544   346788777654

>PLN02822 serine palmitoyltransferase

Probab=97.63  E-value=0.00069  Score=51.22  Aligned_cols=73  Identities=11%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ...+...++++.||++++. ++.|+|++|.+ ++..++.++.    ++||.|++...-|+++.....   -.|.++++++
T Consensus       151 g~~~~~~~Lee~La~~~~~-~~~i~~s~G~~-a~~sai~a~~----~~gd~Ii~d~~~H~s~~~~~~---ls~~~~~~~~  221 (481)
T PLN02822        151 GTIDVHLDCETKIAKFLGT-PDSILYSYGLS-TIFSVIPAFC----KKGDIIVADEGVHWGIQNGLY---LSRSTIVYFK  221 (481)
T ss_pred             cCHHHHHHHHHHHHHHhCC-CCEEEECCHHH-HHHHHHHHhC----CCCCEEEEeCCccHHHHHHHH---HcCCeEEEEC
Confidence            3456789999999999995 47899998887 5667777776    899999998888888755432   2467788887


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      .+
T Consensus       222 ~n  223 (481)
T PLN02822        222 HN  223 (481)
T ss_pred             CC
Confidence            65

>PLN02509 cystathionine beta-lyase

Probab=97.62  E-value=0.001  Score=50.16  Aligned_cols=72  Identities=7%  Similarity=0.010  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~  103 (110)
                      +..+.+.+.+|++.+.  ++.+++++++.++.+++. +.    ++||+||++...|+++...+... ...|++++.++..
T Consensus       133 pt~~aLE~~lA~leg~--e~ai~~~SG~aAi~~il~-ll----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~  205 (464)
T PLN02509        133 PTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT  205 (464)
T ss_pred             HHHHHHHHHHHHHhCC--CEEEEeCcHHHHHHHHHH-Hh----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC
Confidence            4567788888888764  455666666788876553 43    79999999999999987666543 6789999888654

>KOG0258|consensus

Probab=97.62  E-value=8.8e-05  Score=54.45  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         22 ESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ...++++-.|+.+|+|+.      ++|++|.+|.||+.|+..++..+..   .+++-|+++-..||-+......   .|.
T Consensus       110 S~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~---~~~~GvliPiPQYPLYsAti~l---~~~  183 (475)
T KOG0258|consen  110 SDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA---GKKTGVLIPIPQYPLYSATISL---LGG  183 (475)
T ss_pred             ccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc---CCCCceEeecCCCchhHHHHHH---hCC
Confidence            345689999999999994      6789999999999999999998874   6788899999999988766543   355


Q ss_pred             EEEEecCCC
Q psy17798         96 NVLGSNPGQ  104 (110)
Q Consensus        96 ~v~~v~~~~  104 (110)
                      ..+.--+|+
T Consensus       184 ~~v~YyLdE  192 (475)
T KOG0258|consen  184 TQVPYYLDE  192 (475)
T ss_pred             cccceeecc
Confidence            555444554

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=97.59  E-value=0.0006  Score=48.28  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +-+.+..+.+|+|+|+|  .+=+|.|+-++=..++.++.    ++||.|++....|.+...+.   ++.|.+|..||-
T Consensus        61 PpI~~F~~dlaeFlg~D--~~R~t~GARe~KfavMhal~----~~gd~vV~D~~aHYttyvAA---Eragl~v~eVp~  129 (382)
T COG1103          61 PPIKDFLEDLAEFLGMD--EVRVTAGAREAKFAVMHALC----KEGDWVVVDSLAHYTTYVAA---ERAGLNVAEVPN  129 (382)
T ss_pred             CcHHHHHHHHHHHhCCc--eeeecccchhhHHHHHHHhc----cCCCEEEEcCcchHHHHHHH---HhcCCeEEecCC
Confidence            34667777899999985  67899999999999999998    89999999999998877665   457999999994

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=97.55  E-value=0.0014  Score=49.19  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-CcEEEeCChH-HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         23 SEKAVEDARQEIATLINCDP-KEIIFTSGAT-ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~-~~i~~t~gat-~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ......++-+.+++++|+++ ...++++|+| .++.+++.++... ..+++.||++...|.|+..+...   .|++++++
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~~kAi~~---~G~~pv~V  178 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSCIKAIST---AGFEPRVI  178 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHHHHHHHH---cCCeEEEe
Confidence            34577788889999999864 4588999999 6877777766410 01589999999999998876644   69999999


Q ss_pred             cC
Q psy17798        101 NP  102 (110)
Q Consensus       101 ~~  102 (110)
                      ++
T Consensus       179 d~  180 (444)
T TIGR03531       179 ET  180 (444)
T ss_pred             ee
Confidence            85

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=97.54  E-value=0.0016  Score=50.69  Aligned_cols=99  Identities=14%  Similarity=0.061  Sum_probs=70.0

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-----ccC-------------
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEK-------------   69 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-----~~~-------------   69 (110)
                      ..-||....+..+...+....++-+.+++++|.++..=.||+|+|+|+-..+.......     .+.             
T Consensus       106 ~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~  185 (608)
T TIGR03811       106 MLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWE  185 (608)
T ss_pred             HHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchh
Confidence            34455544455666677778889999999999866566799999999987655432110     000             


Q ss_pred             ------------------------------------CCEEEEcCCCChhHHHHHHHHHhCCc---EEEEecCCCCcccc
Q psy17798         70 ------------------------------------KKHVITTQTEHKCVLDSCRILEGEGF---NVLGSNPGQGGNFL  109 (110)
Q Consensus        70 ------------------------------------g~~vl~~~~e~ps~~~~~~~l~~~g~---~v~~v~~~~~G~~~  109 (110)
                                                          -.+++++..-|.|+..+...+   |+   .++.||+|++|.+|
T Consensus       186 l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il---GlG~~~vv~VpvD~~~rmd  261 (608)
T TIGR03811       186 LLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII---GIGLDQVIPVPVDSNYRMD  261 (608)
T ss_pred             hcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc---CCCcccEEEeecCCCCcCC
Confidence                                                015788887799998887665   65   58999999998876

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.48  E-value=0.0011  Score=48.84  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      +..+|...+....+.+.||++-++  +..++++++..|+..++.++.    ++||+||.+..-|......++.+ .+.|+
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~ll----~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv  120 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLALL----KPGDHIVASDDLYGGTYRLLEELLPRFGV  120 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS-----TTBEEEEESSSSHHHHHHHHHCHHHTTS
T ss_pred             cceeccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhhc----ccCCceEecCCccCcchhhhhhhhcccCc
Confidence            555666677888899999999887  578889999999999988886    89999999998898888777764 77899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++..+
T Consensus       121 ~v~~~d~~  128 (386)
T PF01053_consen  121 EVTFVDPT  128 (386)
T ss_dssp             EEEEESTT
T ss_pred             EEEEeCch
Confidence            99998764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.42  E-value=0.00067  Score=48.21  Aligned_cols=81  Identities=19%  Similarity=0.270  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+...++.+.+++++|.+  ..+|++++|.|+.++++++.    ++++.||+...-|..+...-..-...|++++.+|.
T Consensus        27 ~D~~~~~l~~~i~~l~g~e--~a~f~~sGT~An~~al~~~~----~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~  100 (290)
T PF01212_consen   27 EDPTTARLEERIAELFGKE--AALFVPSGTMANQLALRAHL----RPGESVICADTAHIHFDETGAIEELSGAKLIPLPS  100 (290)
T ss_dssp             SSHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHHH----HTTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBE
T ss_pred             CChhHHHHHHHHHHHcCCC--EEEEeCCCChHHHHHHHHHH----hcCCceeccccceeeeeccchhhHhcCcEEEECCC
Confidence            3457788999999999964  45799999999999999988    68999998765554433221111237999999998


Q ss_pred             CCCcccc
Q psy17798        103 GQGGNFL  109 (110)
Q Consensus       103 ~~~G~~~  109 (110)
                      +++|.++
T Consensus       101 ~~~G~l~  107 (290)
T PF01212_consen  101 DDDGKLT  107 (290)
T ss_dssp             CTGTBB-
T ss_pred             cccCCCC
Confidence            7657664

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.40  E-value=0.0018  Score=51.15  Aligned_cols=73  Identities=19%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++-+.+|+.+|++ ...++++|+|.++..++.+..    ++||.||+..-.|-|+.....  .-.|+..++++...
T Consensus       174 G~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~----~~Gd~VLvdRN~HKSv~hgaL--iLsGa~PVYl~P~~  246 (720)
T PRK13578        174 GAAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALL----TPGDLVLFDRNNHKSNHHGAL--IQAGATPVYLETAR  246 (720)
T ss_pred             hHHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHH--HHcCCeEEEeeccc
Confidence            35778889999999986 568899999999999999987    899999999999999876422  23699999987653

>PLN02271 serine hydroxymethyltransferase

Probab=97.36  E-value=0.0013  Score=50.62  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=64.0

Q ss_pred             cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCC----CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798          9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDP----KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus         9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~----~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      .+-|+.+ |..|-+.-+.++. +.+.+.+++++++    -+|--- +++.|+..++.++.    +|||+|+..+.+|.+.
T Consensus       178 EG~pG~R-yy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl----~PGD~IL~ldl~~GGH  251 (586)
T PLN02271        178 EGMPGAR-YYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLL----LPGDRIMGLDSPSGGH  251 (586)
T ss_pred             CCCCCCc-CCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhc----CCCCEEEEecCCCCCc
Confidence            3566664 4445554455544 6667778889876    455444 77788999999986    8999999999999988


Q ss_pred             HHHHH------HHHhCCcEEEEec--CC-CCcccc
Q psy17798         84 LDSCR------ILEGEGFNVLGSN--PG-QGGNFL  109 (110)
Q Consensus        84 ~~~~~------~l~~~g~~v~~v~--~~-~~G~~~  109 (110)
                      .....      .....|..+..+|  +| ++|.+|
T Consensus       252 lshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ID  286 (586)
T PLN02271        252 MSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYID  286 (586)
T ss_pred             hhcccccccccccccccceEEEEEcccccccCccC
Confidence            76542      2233465555554  75 457765

>PRK15029 arginine decarboxylase; Provisional

Probab=97.35  E-value=0.0018  Score=51.55  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+.++-+.+|+.+|++ ...++|+|+|.++..++.+..    ++||.|++..-.|-|+..++.   -.|+..+++++.
T Consensus       205 G~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~----~~gd~Vlv~RN~HKSv~~al~---L~ga~Pvyl~P~  275 (755)
T PRK15029        205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLI---LTGAKPVYMVPS  275 (755)
T ss_pred             cHHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHH---HcCCeEEEeccc
Confidence            46788999999999986 578899999999999999887    899999999999999887553   369999998754

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=97.33  E-value=0.00085  Score=49.01  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      |..++...+...++++++|++.+  .+++++++|+++|+.+++. +.    ++||+||++...|.+....+..
T Consensus        46 ~~Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~-~l----~~GD~VI~~~~~yg~~~~~~~~  111 (364)
T PRK07269         46 FDYTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFS-VF----PVGSKVVAVRDLYGGSFRWFNQ  111 (364)
T ss_pred             cceeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHH-Hh----CCCCEEEEecCCcCchHHHHHH
Confidence            34455556678899999999987  4689999999999998884 43    7999999998777766543333

>PLN02880 tyrosine decarboxylase

Probab=97.32  E-value=0.0033  Score=47.78  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCC-------cEEEeCChHHHHHHHHHHhHHhhcc-------CCCEEEEcCCCChh
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPK-------EIIFTSGATESNNIAVKGVARFYKE-------KKKHVITTQTEHKC   82 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~-------~i~~t~gat~a~~~i~~~l~~~~~~-------~g~~vl~~~~e~ps   82 (110)
                      +..+........++-+.+++++|.+.+       .-+||+|+|+|+...+.+......+       ++-.|++++.-|.|
T Consensus       114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S  193 (490)
T PLN02880        114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA  193 (490)
T ss_pred             cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence            344445566777899999999998643       4789999999987776554321111       22356778888999


Q ss_pred             HHHHHHHHHhCCc---EEEEecCCC--Ccccc
Q psy17798         83 VLDSCRILEGEGF---NVLGSNPGQ--GGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~---~v~~v~~~~--~G~~~  109 (110)
                      +..+...+   |+   .++.||+|+  ++.+|
T Consensus       194 v~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md  222 (490)
T PLN02880        194 LQKACQIA---GIHPENCRLLKTDSSTNYALA  222 (490)
T ss_pred             HHHHHHHc---CCCHHHEEEeecCCCcCCcCC
Confidence            98887665   55   488899975  34443

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.29  E-value=0.0027  Score=50.18  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+.++-+.+|+.+|++ ...++++|+|.++..++.+..    ++||.|++..-.|-|+..++   .-.|+..+++++.
T Consensus       195 G~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~~aL---ilsga~PVYl~P~  265 (713)
T PRK15399        195 GPHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAA----PAGSTLLIDRNCHKSLAHLL---MMSDVVPIWLKPT  265 (713)
T ss_pred             hHHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHH---HHcCCeeEEeccc
Confidence            35678888899999986 568889999999999999987    89999999999999987753   3479999998765

>PLN02590 probable tyrosine decarboxylase

Probab=97.29  E-value=0.0041  Score=47.80  Aligned_cols=91  Identities=12%  Similarity=0.007  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChHHHHHHHHHHhHHhhc-------cCCCEEEEcCCCCh
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDP-------KEIIFTSGATESNNIAVKGVARFYK-------EKKKHVITTQTEHK   81 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~-------~~i~~t~gat~a~~~i~~~l~~~~~-------~~g~~vl~~~~e~p   81 (110)
                      .+..+........++-+.++++++.++       ..-+||+|+|+|+-..+.+......       .++-.|++|+.-|.
T Consensus       161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~  240 (539)
T PLN02590        161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS  240 (539)
T ss_pred             CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence            444555566777789999999999864       3478899999998776655332111       12235667888899


Q ss_pred             hHHHHHHHHHhCCc---EEEEecCCC--Ccccc
Q psy17798         82 CVLDSCRILEGEGF---NVLGSNPGQ--GGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~---~v~~v~~~~--~G~~~  109 (110)
                      |+..+...+   |+   .++.||+|+  ++.+|
T Consensus       241 Sv~KAa~il---Glg~~~vr~Vp~d~~~~~~md  270 (539)
T PLN02590        241 SFRKACLIG---GIHEENIRLLKTDSSTNYGMP  270 (539)
T ss_pred             HHHHHHHHc---CCCcccEEEEeCCCCCCCcCC
Confidence            988877664   55   588999984  34544

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.28  E-value=0.0031  Score=49.86  Aligned_cols=72  Identities=19%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++-+.+|+.+|++ ...++|+|+|.++..++.+..    .+||.||+..-.|-|+..++   .-.|+..++++++.
T Consensus       195 G~i~eAe~~AA~~fgAd-~tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~haL---ilsga~PVYl~P~r  266 (714)
T PRK15400        195 GPHKEAEEYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTVLIDRNCHKSLTHLM---MMSDVTPIYFRPTR  266 (714)
T ss_pred             hHHHHHHHHHHHHhCCC-cEEEEeCchHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHH---HHcCCeEEEecccc
Confidence            36778888999999986 468889999999999999887    89999999999999987753   34799999987653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=97.27  E-value=0.0044  Score=45.46  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .+...++++.+|++++. ++ .++.+++++|+..++..+..  ..+++.|+.+..+|++....+.   ..|+++..++
T Consensus        89 ~~~~~~Le~~la~~~g~-~~-~l~~~sG~~an~~ai~~l~~--~~~~~~v~~~~~~h~s~~~~~~---~~g~~~~~~~  159 (402)
T TIGR01821        89 NIPHVELEAELADLHGK-ES-ALVFTSGYVANDATLATLAK--IIPGCVIFSDELNHASMIEGIR---HSGAEKFIFR  159 (402)
T ss_pred             cHHHHHHHHHHHHHhCC-Ce-EEEECchHHHHHHHHHHhhC--CCCCCEEEEcchHhHHHHHHHH---HcCCeEEEEC
Confidence            44667899999999985 33 45555568888888877651  1367788877788988876653   3566665554

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02397 aspartate transaminase

Probab=97.24  E-value=0.0013  Score=48.75  Aligned_cols=77  Identities=12%  Similarity=0.020  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCC-C-----CCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         21 WESEKAVEDARQEIATLINC-D-----PKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~-~-----~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      +....++.++|+++++++.- .     +++|..  +.+++.+..+++..+..  +.+||+|++++..||.+....   +.
T Consensus        87 Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~--~~pGd~Vlv~~P~y~~y~~~~---~~  161 (423)
T PLN02397         87 YLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLAR--FYPGSTIYIPNPTWGNHHNIF---RD  161 (423)
T ss_pred             CCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHH---HH
Confidence            34456888999999998742 1     234421  33443443333322221  269999998776666665444   55


Q ss_pred             CCcEEEEecC
Q psy17798         93 EGFNVLGSNP  102 (110)
Q Consensus        93 ~g~~v~~v~~  102 (110)
                      .|++++.+|+
T Consensus       162 ~g~~~~~v~l  171 (423)
T PLN02397        162 AGVPVRTYRY  171 (423)
T ss_pred             cCCeEEEeec
Confidence            7999999987

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=97.23  E-value=0.0027  Score=46.35  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l   90 (110)
                      +...++.+.++++++.++++|+|++|+++|+..+++.+..  ..++++|++.+..|++.......+
T Consensus        79 ~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~--~~~~~~ii~~~~~yhg~~~~~~~~  142 (413)
T cd00610          79 EPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARA--YTGRKKIISFEGAYHGRTLGALSL  142 (413)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHH--HcCCCeEEEECCCcCCccHHHHHh
Confidence            4567888999999987789999999999999999987642  156888988877777765544433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=97.10  E-value=0.0024  Score=47.38  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             HHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         20 GWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        20 ~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      |....+.+++ +++.+|+++|.+ .-++++++++.|+..++.++.    ++||+|+++...|.+
T Consensus        68 G~~~~~~lE~~~~~~la~l~g~~-~alv~~~SG~~A~~~~l~al~----~~GD~Vl~~~~~~~~  126 (416)
T PRK13034         68 GCEFVDEVEALAIERAKQLFGCD-YANVQPHSGSQANGAVYLALL----KPGDTILGMSLSHGG  126 (416)
T ss_pred             CChHHHHHHHHHHHHHHHHhCCC-ceEEecCCcHHHHHHHHHHhc----CCCCEEEEcCcccee
Confidence            3344566666 888999999976 333566788999999999986    899999999888876

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.013  Score=43.26  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFN   96 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~   96 (110)
                      .+......+.++++.+...++++. +-+++++++|-++...+.++.    +|||+|++.  ....+-.-|..+ ++.|.+
T Consensus        32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~----~pgdkVLv~--~nG~FG~R~~~ia~~~g~~  105 (383)
T COG0075          32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV----EPGDKVLVV--VNGKFGERFAEIAERYGAE  105 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc----CCCCeEEEE--eCChHHHHHHHHHHHhCCc
Confidence            345667788999999999999874 667888999999999999987    899999874  455555555555 788999


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      ++.+...
T Consensus       106 v~~~~~~  112 (383)
T COG0075         106 VVVLEVE  112 (383)
T ss_pred             eEEEeCC
Confidence            9888765

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.02  E-value=0.0052  Score=49.95  Aligned_cols=84  Identities=10%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeC-ChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTS-GATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~-gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ....+.+.++-+.++++.|.+.-  .+-+ +++.+....+.++...+-    ..+++|+++..+|+++...+   ...|+
T Consensus       539 QG~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa---~~~Gi  613 (954)
T PRK12566        539 EGYRAMIDELEAWLCAITGFDAI--CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASA---QMAGM  613 (954)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeE--eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHH---HHCCC
Confidence            34567888888999999998643  5555 444455455555431000    23568999999998886553   45799


Q ss_pred             EEEEecCCCCcccc
Q psy17798         96 NVLGSNPGQGGNFL  109 (110)
Q Consensus        96 ~v~~v~~~~~G~~~  109 (110)
                      ++++||.|++|.+|
T Consensus       614 eVv~Vp~D~~G~iD  627 (954)
T PRK12566        614 RVVIVECDPDGNVD  627 (954)
T ss_pred             EEEEeccCCCCCcC
Confidence            99999999899876

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0021  Score=46.59  Aligned_cols=57  Identities=21%  Similarity=0.353  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      |...+...++-+.+++.++.  ..++|++++|.++.+.+.+..    +|+..|++....|-..
T Consensus        31 YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~----~~~~~vi~~~~aHi~~   87 (342)
T COG2008          31 YGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC----QPGESVICHETAHIYT   87 (342)
T ss_pred             CCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc----CCCCeEEEecccccee
Confidence            33445677888889998887  889999999999999999988    8999999876666443

>KOG2862|consensus

Probab=96.92  E-value=0.022  Score=41.20  Aligned_cols=92  Identities=12%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798          7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus         7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      ..+.+|.-  ...+.+..+.+++.++-+...+.. .+...+|..+++-++..++..+.    .|||+|++-..--=+ .+
T Consensus        34 ~A~~~~~l--gh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l----ePgd~vLv~~~G~wg-~r  106 (385)
T KOG2862|consen   34 EAMSRPSL--GHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL----EPGDNVLVVSTGTWG-QR  106 (385)
T ss_pred             HhhcCCcc--ccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc----CCCCeEEEEEechHH-HH
Confidence            34556654  234567788999999999998886 45668888888888888877766    899999874432222 34


Q ss_pred             HHHHHHhCCcEEEEecCCCC
Q psy17798         86 SCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        86 ~~~~l~~~g~~v~~v~~~~~  105 (110)
                      +....++.|++|..|+.+..
T Consensus       107 a~D~~~r~ga~V~~v~~~~G  126 (385)
T KOG2862|consen  107 AADCARRYGAEVDVVEADIG  126 (385)
T ss_pred             HHHHHHhhCceeeEEecCcc
Confidence            45555789999999988754

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=96.87  E-value=0.0096  Score=43.72  Aligned_cols=78  Identities=13%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         23 SEKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..+.++......++..+  .+++.|+|++|.--++.++++++-    ++||.|++...-||.+....   +..|-++...
T Consensus        62 ~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T----~~gd~Vvi~tPvY~PF~~~i---~~n~R~~i~~  134 (388)
T COG1168          62 SDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT----KPGDGVVIQTPVYPPFYNAI---KLNGRKVIEN  134 (388)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC----cCCCeeEecCCCchHHHHHH---hhcCcEEEec
Confidence            33455555556655544  468889999999999999999987    89999999887787777655   4578889999


Q ss_pred             cCC-CCcc
Q psy17798        101 NPG-QGGN  107 (110)
Q Consensus       101 ~~~-~~G~  107 (110)
                      |+. ++|.
T Consensus       135 pL~~~~~~  142 (388)
T COG1168         135 PLVEDDGR  142 (388)
T ss_pred             cccccCCc
Confidence            987 3454

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=96.87  E-value=0.0092  Score=48.57  Aligned_cols=85  Identities=11%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ....+.+.++-+.++++.|.+. --+..++++.|....+.++...+-    ..++.|+++...|+++...+   +..|++
T Consensus       526 qG~lq~i~elq~~l~eltGmd~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa---~~~G~~  601 (939)
T TIGR00461       526 EGYQELIAQLEKWLCSITGFDA-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASA---AMAGMQ  601 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHH---HHCCCE
Confidence            3466889999999999999883 223444455544434433321000    13468999999997776553   446999


Q ss_pred             EEEecCCCCcccc
Q psy17798         97 VLGSNPGQGGNFL  109 (110)
Q Consensus        97 v~~v~~~~~G~~~  109 (110)
                      +++||+|++|.+|
T Consensus       602 Vv~V~~d~~G~iD  614 (939)
T TIGR00461       602 VVPVNCDQDGNID  614 (939)
T ss_pred             EEEeccCCCCCcC
Confidence            9999999999886

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=96.84  E-value=0.024  Score=41.75  Aligned_cols=77  Identities=8%  Similarity=0.034  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH--HHHHhCCc
Q psy17798         20 GWESEKAVEDARQEIATLINCDPK-E-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC--RILEGEGF   95 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~-~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~--~~l~~~g~   95 (110)
                      +....+.+.++++.+.++++.+.+ + +++++|+|.++..++.++..   ++|+++++..    .+-.-|  +..+..|+
T Consensus        34 s~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~---~~g~~vLv~g----~FG~r~~~eia~~~g~  106 (374)
T TIGR01365        34 SKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG---CRGVDVLAWE----SFGKGWVTDVTKQLKL  106 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC---CCCCeEEEEC----HHHHHHHHHHHHhcCC
Confidence            345567889999999999997433 3 66799999999999988762   3788888643    443333  33467888


Q ss_pred             -EEEEecCC
Q psy17798         96 -NVLGSNPG  103 (110)
Q Consensus        96 -~v~~v~~~  103 (110)
                       ++..+...
T Consensus       107 ~~v~~l~~~  115 (374)
T TIGR01365       107 PDVRVLEAE  115 (374)
T ss_pred             CCcEEEcCC
Confidence             47777654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=96.79  E-value=0.012  Score=43.64  Aligned_cols=81  Identities=14%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      +..++...+....+-+.++.+-|  .+..+.++++..|+..++.++.    ++||+||.+..-|.+.......+ ++.|+
T Consensus        55 ~~Y~R~~nPT~~~lE~~~a~LEg--~~~~~afsSGmaAI~~~~l~ll----~~GD~vl~~~~~YG~t~~~~~~~l~~~gi  128 (396)
T COG0626          55 YDYSRTGNPTRDALEEALAELEG--GEDAFAFSSGMAAISTALLALL----KAGDHVLLPDDLYGGTYRLFEKILQKFGV  128 (396)
T ss_pred             cccccCCCccHHHHHHHHHHhhC--CCcEEEecCcHHHHHHHHHHhc----CCCCEEEecCCccchHHHHHHHHHHhcCe
Confidence            44444444455556666666554  3567778888889998887776    89999999988888888777776 78899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++...
T Consensus       129 ~~~~~d~~  136 (396)
T COG0626         129 EVTFVDPG  136 (396)
T ss_pred             EEEEECCC
Confidence            99988654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=96.62  E-value=0.024  Score=43.68  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      .+.++-+.+|+.+|++ ...++++|+|.|+..++.+..    .+||.|++..-.|-|....+   -..|+..+++....
T Consensus        71 ~i~eAqe~aA~~fgAd-~tyFvvNGTS~ank~vi~a~~----~~GD~VLvdRN~HKSi~~gl---ilaGa~Pvyl~p~~  141 (557)
T COG1982          71 PIKEAQELAARVFGAD-HTYFVVNGTSTANKAVINAVL----TPGDKVLVDRNCHKSIHHGL---ILAGATPVYLEPSR  141 (557)
T ss_pred             cHHHHHHHHHHHhCCC-ceEEEECCccHHHHHHHHhhc----CCCCEEEecCCccHHHHHHH---HHcCCceEEecCCC
Confidence            5678888899999986 368889999999999999988    89999999999999987663   33688888876554

>PRK09064 5-aminolevulinate synthase; Validated

Probab=96.54  E-value=0.037  Score=40.63  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      .+...++++.+|++++. ++.++|++| ++++..++..+..  ..+++.|+....+|.+....+..   .|+++..++.
T Consensus        90 ~~~~~~l~~~la~~~g~-~~~~~~~sG-~~an~~ai~~l~~--~~~~~~i~~~~~~h~s~~~~~~~---~~~~~~~~~~  161 (407)
T PRK09064         90 NHYHVELERELADLHGK-EAALVFTSG-YVSNDATLSTLAK--LIPDCVIFSDELNHASMIEGIRR---SRCEKHIFRH  161 (407)
T ss_pred             HHHHHHHHHHHHHHhCC-CcEEEECcH-HHHHHHHHHHHhC--CCCCCEEEEeCcchHHHHHHHHH---cCCcEEEECC
Confidence            45678999999999984 556666665 4666666665541  13677777777888887665532   4566555553

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=96.47  E-value=0.03  Score=42.05  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v  100 (110)
                      ...+.+-+.-..++++.|.+.-+.-+-.++|.+-..++.+.... .+++++|+++..-||.+....+.. ...|++++.+
T Consensus       107 G~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~-~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~  185 (429)
T PF02347_consen  107 GRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRAT-KRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEV  185 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHH-TT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhc-ccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEe
Confidence            45567889999999999988666677777776666555554321 133469999999999998877766 5689999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |.+++|..|
T Consensus       186 ~~~~~~~~d  194 (429)
T PF02347_consen  186 PLDEDGTTD  194 (429)
T ss_dssp             -BBTTCSB-
T ss_pred             cccccCCcc
Confidence            999887764

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=96.47  E-value=0.023  Score=46.37  Aligned_cols=81  Identities=10%  Similarity=0.037  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v  100 (110)
                      ...+.+-+....++++.|.+..|..+..++|.+...++.+.... .+++++|++++..||.....++.. +..|++++.+
T Consensus       106 G~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~-~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~  184 (939)
T TIGR00461       106 GRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVS-KKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV  184 (939)
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhh-cCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE
Confidence            34567888899999999999999999999999888777775321 133489999999999999888854 7789999998


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      +++
T Consensus       185 ~~~  187 (939)
T TIGR00461       185 DCS  187 (939)
T ss_pred             cHH
Confidence            764

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=96.42  E-value=0.0063  Score=45.19  Aligned_cols=95  Identities=19%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEE---EeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEII---FTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~---~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      +.|+.+ |..|-+..+.+++ +.+.+.++++++|++-.   =..|++.|+..++.+|.    +|||+|+.-+.+|...+.
T Consensus        51 g~pg~r-yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl----~pGD~Im~l~l~~GGHls  125 (399)
T PF00464_consen   51 GYPGKR-YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL----KPGDTIMGLSLPHGGHLS  125 (399)
T ss_dssp             EETTEE-SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-----TT-EEEEEEGGGT--GG
T ss_pred             cCCCcc-cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH----hhcCcEEecChhhccccc
Confidence            455553 4445555555555 77778889999876532   23567789999999987    899999987766533221


Q ss_pred             ---HHHH----HHhCCcEEEEecCC-CCcccc
Q psy17798         86 ---SCRI----LEGEGFNVLGSNPG-QGGNFL  109 (110)
Q Consensus        86 ---~~~~----l~~~g~~v~~v~~~-~~G~~~  109 (110)
                         ....    .....+++...++| +++.||
T Consensus       126 hg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID  157 (399)
T PF00464_consen  126 HGSSVNFKKISASGLYFESVPYPVDPDTGLID  157 (399)
T ss_dssp             GT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-
T ss_pred             ccccccccccccccceEEEEeeeeecCCCeEC
Confidence               1111    01124678888998 467766

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=96.19  E-value=0.046  Score=41.47  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhHHhhccCCCEEEEcCC
Q psy17798          9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIF---TSGATESNNIAVKGVARFYKEKKKHVITTQT   78 (110)
Q Consensus         9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~---t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~   78 (110)
                      .+.|+++ +..|....+.+++ +++..++.+++..+.+.+   ..+++.|+..++.++.    ++||+|+..+.
T Consensus        64 ~G~~g~r-~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~----~pgD~Il~~d~  132 (475)
T PLN03226         64 EGLPGAR-YYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL----QPHDRIMGLDL  132 (475)
T ss_pred             CCCCCCc-CcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC----CCCCEEEECCC
Confidence            3556653 3445455566665 666688889998887766   3667788888888887    89999998553

>PRK07505 hypothetical protein; Provisional

Probab=96.16  E-value=0.12  Score=38.02  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..+...++++.++++++.  +.+++++| ++|+..++..+......  +++.|+.....|+++.... .+...+.+++.+
T Consensus        89 ~~~~~~~l~~~la~~~~~--~~~~~~sG-~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~-~~~~~~~~v~~~  164 (402)
T PRK07505         89 RSQILKDLEEALSELFGA--SVLTFTSC-SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILK-GICADETEVETI  164 (402)
T ss_pred             hhHHHHHHHHHHHHHhCC--CEEEECCh-HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhh-hhhhcCCeEEEe
Confidence            466889999999999986  55555554 56776666543211112  2335565668888764322 222245677777


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      |..
T Consensus       165 ~~~  167 (402)
T PRK07505        165 DHN  167 (402)
T ss_pred             CCC
Confidence            753

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=96.04  E-value=0.081  Score=39.99  Aligned_cols=68  Identities=9%  Similarity=-0.018  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      -+.++.+.+++++|.+  .+++|+++|.|++++.....    ++||.|  +...|-+...+  ..+..|+..+-++.+
T Consensus        72 s~~~lE~~va~~~G~~--~av~v~sGT~Al~ll~~l~l----~pGDeV--psn~~f~Tt~a--hIe~~Gav~vDi~~d  139 (450)
T TIGR02618        72 NFYHLERTVRELYGFK--YVVPTHQGRGAENLLSQIAI----KPGDYV--PGNMYFTTTRY--HQEKNGATFVDIIID  139 (450)
T ss_pred             cHHHHHHHHHHHHCCC--eEEEcCCHHHHHHHHHHhCC----CCcCEE--CCceeHHHHHH--HHHhCCeEEEeeecc
Confidence            4668889999999975  69999999999998754433    899977  33444222222  124467766666443

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG0633|consensus

Probab=95.92  E-value=0.0044  Score=43.83  Aligned_cols=63  Identities=8%  Similarity=0.073  Sum_probs=47.1

Q ss_pred             CCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         40 CDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        40 ~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ..+|+|.++-|+.|.+..++++..    .|| ++|+.++..|.-+....   .-.+++|+.+|.+++-..+
T Consensus        84 Lt~dnic~GvGsDE~ID~iiR~~c----~PGkeKIl~cPPtysMY~v~A---~iNd~eVvkvpl~pdF~ln  147 (375)
T KOG0633|consen   84 LTSDNICVGVGSDELIDLIIRCVC----DPGKEKILDCPPTYSMYVVDA---AINDAEVVKVPLNPDFSLN  147 (375)
T ss_pred             CCccceEEecCcHHHHHHHHhhee----cCCccceeecCCcceeEEEEe---ecCCceEEEecCCCCcccc
Confidence            468999999999999999999987    677 78987665554332211   2368999999998865443

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=95.67  E-value=0.016  Score=42.83  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      +-|+.+ |.-|-+..+.++. +.+...+++|++--+|--.||+ .|+..++.++.    +|||.|+.-++.|...+.-..
T Consensus        57 GyPgkR-yYgGce~VD~vE~laierak~LFga~~anVQPhSGs-~AN~av~~All----~pGDtimgm~l~~GGHltHg~  130 (413)
T COG0112          57 GYPGKR-YYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGS-QANQAVYLALL----QPGDTIMGLDLSHGGHLTHGS  130 (413)
T ss_pred             CCCCcc-ccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCch-HHHHHHHHHHc----CCCCeEecccCCCCCcccCCC
Confidence            567774 5556676667666 6667778999987787777765 66777888887    899999988777666544321


Q ss_pred             HHHhCC--cEEEEecCCC-Ccccc
Q psy17798         89 ILEGEG--FNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        89 ~l~~~g--~~v~~v~~~~-~G~~~  109 (110)
                      ..--.|  ++++..|+|+ ++.||
T Consensus       131 ~v~~sG~~~~~v~Y~vd~et~~ID  154 (413)
T COG0112         131 PVNFSGKLFNVVSYGVDPETGLID  154 (413)
T ss_pred             CCCccceeEEeEecccccccCccC
Confidence            111112  6788889995 58776

>PLN02452 phosphoserine transaminase

Probab=95.38  E-value=0.28  Score=36.08  Aligned_cols=73  Identities=10%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC-cE-EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH-HHHHHHHhCCcE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPK-EI-IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL-DSCRILEGEGFN   96 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~-~i-~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~-~~~~~l~~~g~~   96 (110)
                      +....+.++++++.+.++++.+.+ +| ++..|+|.++..++..+.    .+|+++++..  ...+- +..+..++.|..
T Consensus        47 s~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~----~~~~~~l~~~--~G~fg~r~~~~a~~~g~~  120 (365)
T PLN02452         47 GKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC----KPGDKADFVV--TGSWSKKAAKEAKKYCKT  120 (365)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC----CCCCeEEEEE--CCHHHHHHHHHHHHhCCC
Confidence            445678999999999999998432 45 555889999999998887    6788776543  33333 333444667754


Q ss_pred             EE
Q psy17798         97 VL   98 (110)
Q Consensus        97 v~   98 (110)
                      .+
T Consensus       121 ~~  122 (365)
T PLN02452        121 NV  122 (365)
T ss_pred             cE
Confidence            33

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=95.20  E-value=0.1  Score=37.72  Aligned_cols=55  Identities=18%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc----CCCEEEEcCCCChh
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE----KKKHVITTQTEHKC   82 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~----~g~~vl~~~~e~ps   82 (110)
                      +...++.+.++++++.  +++++++|+++++..+++.+.. +..    ++++|++....|+.
T Consensus        69 ~~~~~l~~~la~~~g~--~~~~~~~sg~~a~~~a~~~~~~-~~~~~~~~~~~vi~~~~~yh~  127 (379)
T TIGR00707        69 EPQEELAEKLVEHSGA--DRVFFCNSGAEANEAALKLARK-YTGDKGKEKKKIIAFENSFHG  127 (379)
T ss_pred             HHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHH-HhhccCCCCCeEEEECCCcCC
Confidence            3456678888888875  4999999999999999886531 112    36888887655543

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=94.98  E-value=0.12  Score=37.88  Aligned_cols=54  Identities=11%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         28 EDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        28 ~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      .++.+.++++++. ++++|+|++|+++|+..+++.+..   ..++.|+..+..|+...
T Consensus        88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~---~g~~~ii~~~~~yhg~~  142 (398)
T PRK03244         88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL---TGRTKIVAAEGGFHGRT  142 (398)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH---HCCCeEEEECCCcCCcc
Confidence            4677777887775 358999999999999999987652   22356666554565543

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=94.82  E-value=0.14  Score=37.43  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHH
Q psy17798         30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCR   88 (110)
Q Consensus        30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~   88 (110)
                      +-+.++++.  ..++|+|++|+++|+..+++.+......+|+    +||+.+..||+....+.
T Consensus        78 la~~l~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~  138 (389)
T PRK01278         78 LAERLVENS--FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI  138 (389)
T ss_pred             HHHHHHhhC--CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH
Confidence            334444433  3479999999999999998876321113454    88888777777655443

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=94.77  E-value=0.096  Score=38.74  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEE
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLG   99 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~   99 (110)
                      |.+.+..+.+-+.||.+=|.-  --+.+++++.|+..++..+.    ++||+||.+..=|......+... ++.|++|++
T Consensus        58 Ri~NPT~~vlE~RiAaLEGG~--aa~a~aSG~AA~~~ai~~la----~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~f  131 (426)
T COG2873          58 RIMNPTTDVLEERIAALEGGV--AALAVASGQAAITYAILNLA----GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRF  131 (426)
T ss_pred             eccCchHHHHHHHHHHhhcch--hhhhhccchHHHHHHHHHhc----cCCCeeEeeccccCchHHHHHHHHHhcCcEEEE
Confidence            344455556666777665421  12456777788888888887    89999999988888777666665 889999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +..++
T Consensus       132 vd~~d  136 (426)
T COG2873         132 VDPDD  136 (426)
T ss_pred             eCCCC
Confidence            97664

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=94.75  E-value=0.55  Score=34.64  Aligned_cols=51  Identities=8%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-CcEEEe-CChHHHHHHHHHHhHHhhccCCCEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDP-KEIIFT-SGATESNNIAVKGVARFYKEKKKHVI   74 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t-~gat~a~~~i~~~l~~~~~~~g~~vl   74 (110)
                      +....+.+.++++.+.++++.+. .+|+|. +|+|.++..+...+.    .+|++++
T Consensus        44 s~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll----~~g~~~~   96 (364)
T PRK12462         44 SSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS----RPGAAAP   96 (364)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC----CCCCcEE
Confidence            45667889999999999999843 456555 559999999988886    6888543

>KOG0053|consensus

Probab=94.34  E-value=0.18  Score=37.61  Aligned_cols=80  Identities=14%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      .++...+....+-+.++.+-++.  ..+..+++..|+..++..+.    ..|++||.+..-|......+..+ .+.|++.
T Consensus        71 Ysr~~nPt~~~le~~iaal~ga~--~~l~fsSGmaA~~~al~~L~----~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~  144 (409)
T KOG0053|consen   71 YSRSGNPTRDVLESGIAALEGAA--HALLFSSGMAAITVALLHLL----PAGDHIVATGDVYGGTLRILRKFLPKFGGEG  144 (409)
T ss_pred             cccCCCCchHHHHHHHHHHhCCc--eEEEecccHHHHHHHHHHhc----CCCCcEEEeCCCcccHHHHHHHHHHHhCcee
Confidence            33333344445556666666653  37777777778888888877    79999999988888888888777 7889999


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      ..+.+++
T Consensus       145 ~~vd~~~  151 (409)
T KOG0053|consen  145 DFVDVDD  151 (409)
T ss_pred             eeechhh
Confidence            9987664

>KOG1368|consensus

Probab=94.16  E-value=0.14  Score=37.06  Aligned_cols=78  Identities=17%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++-+.+|+++|-  +-=+|++++|.++.+.++.-.-   ++|.+||+.+..|--.+..-..-.-.|+.++.+...+||
T Consensus        58 t~rLE~~vA~l~GK--EAgLFv~SGTmgNllaIm~Hc~---~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dg  132 (384)
T KOG1368|consen   58 TNRLEQRVAELFGK--EAGLFVPSGTMGNLLAIMVHCH---QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDG  132 (384)
T ss_pred             HHHHHHHHHHHhCc--cceeeecccccccHHHHHHHhc---CCCceEEeccchheeehhccChhhhccceeEeeeeCCCC
Confidence            34566677777763  4467888889999988887763   799999987666533222211112357888888887787


Q ss_pred             ccc
Q psy17798        107 NFL  109 (110)
Q Consensus       107 ~~~  109 (110)
                      -++
T Consensus       133 tm~  135 (384)
T KOG1368|consen  133 TMD  135 (384)
T ss_pred             eee
Confidence            653

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=93.78  E-value=0.35  Score=35.76  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      +...+++++|++++.. .++|+|++|++||+..+++.... + ..+++||+....|+..
T Consensus        88 ~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~ar~-~-~gr~~ii~~~~~yhG~  143 (423)
T TIGR00713        88 EAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARG-Y-TGRDKIIKFEGCYHGH  143 (423)
T ss_pred             HHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHHHH-h-hCCCEEEEEcCCCCCC
Confidence            3556788888887754 36899999999999998885432 2 3557777665555553

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=93.76  E-value=0.099  Score=38.60  Aligned_cols=76  Identities=12%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhCCCCCcEE---EeCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH-------HHHHhCCcE
Q psy17798         28 EDARQEIATLINCDPKEII---FTSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC-------RILEGEGFN   96 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~---~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~-------~~l~~~g~~   96 (110)
                      +.+-+..|+.+++.. -++   |+ ++|+|+.+++.++.    +|||+++... .=|.+.....       -.|++.|++
T Consensus        57 d~le~iyA~vfgaE~-ALVRpq~v-SGTHAi~~~Lfg~L----rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~  130 (403)
T PF06838_consen   57 DKLERIYADVFGAED-ALVRPQFV-SGTHAIALALFGVL----RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK  130 (403)
T ss_dssp             HHHHHHHHHHCT-SE-EEEETTS--SHHHHHHHHHHHH------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred             HHHHHHHHHHhCchh-hhhccccc-chHHHHHHHHHhcC----CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence            344455677788642 111   22 67899999999987    8999998542 2222222221       123567999


Q ss_pred             EEEecCCCCcccc
Q psy17798         97 VLGSNPGQGGNFL  109 (110)
Q Consensus        97 v~~v~~~~~G~~~  109 (110)
                      ...||+.+||.+|
T Consensus       131 Y~~v~L~~dg~~D  143 (403)
T PF06838_consen  131 YREVPLTEDGTID  143 (403)
T ss_dssp             EEE--B-TTSSB-
T ss_pred             eEEEeecCCCCcC
Confidence            9999999999876

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=93.74  E-value=0.88  Score=34.80  Aligned_cols=79  Identities=14%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh----------hccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF----------YKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~----------~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      ..+...++-+.||++++.+  ..++.+++..|+..++.++.-.          ...+++.|++....|.|.....+..+.
T Consensus       145 ~~~~h~~LE~~LA~f~g~e--~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~  222 (476)
T PLN02955        145 YTTYHRLLESSLADLKKKE--DCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER  222 (476)
T ss_pred             ChHHHHHHHHHHHHHHCCC--cEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccc
Confidence            3456678999999999853  4566666667777777665200          014567888888999998877654433


Q ss_pred             C-CcEEEEecCC
Q psy17798         93 E-GFNVLGSNPG  103 (110)
Q Consensus        93 ~-g~~v~~v~~~  103 (110)
                      . ++++...+.+
T Consensus       223 ~~~a~~~~f~HN  234 (476)
T PLN02955        223 QGNVEVFVYRHC  234 (476)
T ss_pred             cCCceEEEeCCC
Confidence            3 4777776654

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=93.63  E-value=0.2  Score=36.49  Aligned_cols=51  Identities=18%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc---CCCEEEEcCCCChh
Q psy17798         30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE---KKKHVITTQTEHKC   82 (110)
Q Consensus        30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~---~g~~vl~~~~e~ps   82 (110)
                      +.+.++++.  ..++++||+|+++|+..+++.+....-+   ++++|++....|+.
T Consensus        86 la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg  139 (396)
T PRK02627         86 LAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHG  139 (396)
T ss_pred             HHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCc
Confidence            334444443  4589999999999999999866421001   12667766555543

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=92.90  E-value=1.5  Score=33.39  Aligned_cols=65  Identities=8%  Similarity=-0.027  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      -+.++.+.+++++|.+  .+++|+++|.|+++++....    ++||.|  +...|-+...+.  ....|+..+-+
T Consensus        79 s~~~LE~~vAe~lG~e--~aV~v~sGTaAl~ll~~l~v----~pGd~V--p~n~~f~Tt~ah--I~~~Ga~fvDi  143 (460)
T PRK13237         79 NFYHLEETVQEYYGFK--HVVPTHQGRGAENLLSRIAI----KPGQYV--PGNMYFTTTRYH--QELNGGIFVDI  143 (460)
T ss_pred             cHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHhCC----CCcCEE--CCccchHhhHHH--HHhCCcEEEee
Confidence            3567888999999975  59999999999998644333    789965  444444333321  24467644433

>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=92.39  E-value=2  Score=30.96  Aligned_cols=74  Identities=22%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhHHH--HHHHHHhCCcE
Q psy17798         23 SEKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCVLD--SCRILEGEGFN   96 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~~~--~~~~l~~~g~~   96 (110)
                      ..+.++++++.+++.--  ....+++.|.+.+.++..++....    +++.  +|++++ ..|.+.+  ..+.|++.|++
T Consensus        98 ~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~----~~~k~~~V~VtE-SRP~~eG~~~ak~L~~~gI~  172 (301)
T COG1184          98 FIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAA----DRGKRFKVIVTE-SRPRGEGRIMAKELRQSGIP  172 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhh----hcCCceEEEEEc-CCCcchHHHHHHHHHHcCCc
Confidence            33455556666665432  246789999888888877777655    4444  566654 4565543  35667888998


Q ss_pred             EEEec
Q psy17798         97 VLGSN  101 (110)
Q Consensus        97 v~~v~  101 (110)
                      +..|+
T Consensus       173 ~~~I~  177 (301)
T COG1184         173 VTVIV  177 (301)
T ss_pred             eEEEe
Confidence            88876

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=91.42  E-value=1.9  Score=32.77  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCCh-HHH---HHHHHHHhHHhh-ccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGA-TES---NNIAVKGVARFY-KEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~ga-t~a---~~~i~~~l~~~~-~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+.+.++.+.+.+.-|-  |.|.+.+++ .++   =-++++.+-... -..++.+|+++..|..+.....   -.|++|+
T Consensus       108 l~li~~Lq~~L~~ITG~--DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa---m~G~~VV  182 (496)
T COG1003         108 LELIYELQEWLKEITGM--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAA---MAGFKVV  182 (496)
T ss_pred             HHHHHHHHHHHHHhcCC--ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHh---hcCceEE
Confidence            34555555555555444  567776553 222   223444443211 0234689999999999886553   3699999


Q ss_pred             EecCCCCcccc
Q psy17798         99 GSNPGQGGNFL  109 (110)
Q Consensus        99 ~v~~~~~G~~~  109 (110)
                      .|+.+++|.+|
T Consensus       183 ~V~~~~~G~VD  193 (496)
T COG1003         183 VVKCDENGNVD  193 (496)
T ss_pred             EEecCCCCCcc
Confidence            99999999987

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=90.43  E-value=1.2  Score=32.35  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798         28 EDARQEIATLINCDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .++++.+|+.+...++. ++|++++++|+..+++.... . .++++|++.+..|+
T Consensus        69 ~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~-~-~~~~~vv~~~~~yH  121 (375)
T PRK04260         69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK-A-TGKQEIITFQNSFH  121 (375)
T ss_pred             CHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH-h-cCCCeEEEECCCcC
Confidence            34566777766444454 68999999999988876532 1 45667777655444

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=90.24  E-value=1.1  Score=32.90  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHHHH
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSCRI   89 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~~~   89 (110)
                      +.+-..+|-++|+.+.|++++.+++--++.++.+..+  .++|+.||+++ ..+|+-+.+.+-
T Consensus        79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr--~~~~r~vIv~E~~~fpTdly~a~g  139 (407)
T COG3844          79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALR--PQEGRRVIVSEGDNFPTDLYIAEG  139 (407)
T ss_pred             hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhc--cCCCceEEeecCCCCCcchhhhcc
Confidence            3456678888999999999999999988888777653  25678777774 455665555443

>KOG2142|consensus

Probab=89.94  E-value=0.79  Score=36.26  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             hhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHH
Q psy17798          6 TNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVAR   64 (110)
Q Consensus         6 ~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~   64 (110)
                      .....|||+ ....++...+..++.|-.+..+++..  ..+++||. .++|+.+++.++++
T Consensus        46 ~~e~~nphs-~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae~fp~  104 (728)
T KOG2142|consen   46 SSENANPHS-HLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAEAFPF  104 (728)
T ss_pred             ccccCCCcc-cccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHHhCcc
Confidence            346688997 67778888889999998888899854  46799999 99999999999985

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=89.82  E-value=0.85  Score=33.22  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC-hhHHHH-------HHHHHhCCcEEE
Q psy17798         29 DARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH-KCVLDS-------CRILEGEGFNVL   98 (110)
Q Consensus        29 ~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~-ps~~~~-------~~~l~~~g~~v~   98 (110)
                      .+-+.-|+.+++...  ..-|.+| |+|+..++.++.    +|||+.+.-...- ......       ...|+..|+..+
T Consensus        69 tLe~vyA~vf~aE~a~VRpq~isG-THAI~~aLfg~L----RpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~  143 (416)
T COG4100          69 TLERVYAQVFGAEAALVRPQIISG-THAIACALFGIL----RPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYK  143 (416)
T ss_pred             HHHHHHHHHhccccceeeeeeecc-hhHHHHHHHhcc----CCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCccee
Confidence            344456677886432  3445554 688999998887    8999987543221 111111       123556788899


Q ss_pred             EecCCCCcccc
Q psy17798         99 GSNPGQGGNFL  109 (110)
Q Consensus        99 ~v~~~~~G~~~  109 (110)
                      -||+.++|.+|
T Consensus       144 ~v~Lt~~gkiD  154 (416)
T COG4100         144 AVPLTADGKID  154 (416)
T ss_pred             ecccccCCccc
Confidence            99999999887

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=89.49  E-value=4.3  Score=30.33  Aligned_cols=72  Identities=15%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ...+...++-+.||+|+|.+ +-++|++|- .|+.-++.++.    +++|.|+.....|-|.....+   -.+++++..+
T Consensus        81 G~~~~h~~LE~~lA~f~g~e-~al~f~SGy-~AN~~~i~~l~----~~~dli~~D~lnHASiidG~r---ls~a~~~~f~  151 (388)
T COG0156          81 GTSDLHVELEEELADFLGAE-AALLFSSGF-VANLGLLSALL----KKGDLIFSDELNHASIIDGIR---LSRAEVRRFK  151 (388)
T ss_pred             CCcHHHHHHHHHHHHHhCCC-cEEEEcccc-hhHHHHHHHhc----CCCcEEEEechhhhhHHHHHH---hCCCcEEEec
Confidence            34567788999999999975 567777775 45666777777    789999999999998766553   2456666555


Q ss_pred             C
Q psy17798        102 P  102 (110)
Q Consensus       102 ~  102 (110)
                      .
T Consensus       152 H  152 (388)
T COG0156         152 H  152 (388)
T ss_pred             C
Confidence            4

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=89.35  E-value=1.7  Score=31.82  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-----cc-CCCEEEEcCCCChhH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KE-KKKHVITTQTEHKCV   83 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-----~~-~g~~vl~~~~e~ps~   83 (110)
                      ...++-+.++++.+.  +.++|++++++|+..+++.+....     .. .+++|++....+++.
T Consensus        84 ~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~  145 (401)
T PRK00854         84 QLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGR  145 (401)
T ss_pred             HHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCc
Confidence            445566677777654  589999999999999998774210     01 235677666555543

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=88.89  E-value=2.4  Score=31.25  Aligned_cols=65  Identities=14%  Similarity=0.215  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhC-C--CCCcEEEeCChHHHHHHHHHHhHHh--hccCCCEEEEcCCCChhHHHHHHHH
Q psy17798         26 AVEDARQEIATLIN-C--DPKEIIFTSGATESNNIAVKGVARF--YKEKKKHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        26 ~~~~~R~~la~~l~-~--~~~~i~~t~gat~a~~~i~~~l~~~--~~~~g~~vl~~~~e~ps~~~~~~~l   90 (110)
                      .+++.-+.|=+.+| +  +..-|+|+.|+|+.++.++.+|...  ...+--+||.+..=||++...-..+
T Consensus        47 eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f  116 (363)
T PF04864_consen   47 ELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF  116 (363)
T ss_dssp             HHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT
T ss_pred             HHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc
Confidence            33444444444444 3  4557999999999999999999743  1112237887777777777655444

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=87.88  E-value=2.2  Score=30.91  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHhCC-C-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798         28 EDARQEIATLINC-D-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus        28 ~~~R~~la~~l~~-~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      .+.++.+++++.. . .+.++|++++++|+..+++.... . ..+++|++.+..+++.
T Consensus        70 ~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~-~-~g~~~vi~~~~~~Hg~  125 (377)
T PRK02936         70 NSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARK-H-TGKSKIVTFEQSFHGR  125 (377)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHH-h-cCCCeEEEECCCcCCC
Confidence            3455666666653 2 36899999999999999885321 1 3446677766555543

>KOG1383|consensus

Probab=87.87  E-value=3.7  Score=31.41  Aligned_cols=77  Identities=19%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcE-EEeCChHHHHHHHHHHhHHhhcc----CCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         24 EKAVEDARQEIATLINCDPKEI-IFTSGATESNNIAVKGVARFYKE----KKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i-~~t~gat~a~~~i~~~l~~~~~~----~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      .....++-..++.+++++++.+ .-|+|+||++-.....+.....+    ...+|+++    .+...+|+.. +..++++
T Consensus       119 ~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~----~~v~~a~eK~a~yf~v~l  194 (491)
T KOG1383|consen  119 RKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTP----QNVHAAFEKAARYFEVEL  194 (491)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccch----HHHHHHHHHHHhhEEEEE
Confidence            3456677788999999987654 56788999966665555421112    12345443    2334556666 5578999


Q ss_pred             EEecCCC
Q psy17798         98 LGSNPGQ  104 (110)
Q Consensus        98 ~~v~~~~  104 (110)
                      +.||+++
T Consensus       195 ~~V~~~~  201 (491)
T KOG1383|consen  195 REVPLDE  201 (491)
T ss_pred             Eeeeccc
Confidence            9999995

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=87.58  E-value=2.2  Score=32.88  Aligned_cols=53  Identities=25%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             cCCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798          9 YGNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVA   63 (110)
Q Consensus         9 ~~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~   63 (110)
                      .+-|+.. |+.|-+..+.++. +.+.+.++|+++.-+|=.-||+ .|+..++.++.
T Consensus        79 eg~pg~r-yy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~-~An~~v~~all  132 (493)
T PRK13580         79 EGTPGHR-FYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGA-DANLVAFWAIL  132 (493)
T ss_pred             CCCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcH-HHHHHHHHHHh
Confidence            3556663 4445554555544 7777778999987777666654 56777777776

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=87.40  E-value=3.5  Score=27.69  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc-EEEEecCC
Q psy17798         42 PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF-NVLGSNPG  103 (110)
Q Consensus        42 ~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~-~v~~v~~~  103 (110)
                      ||-|++ .|+ ..+..++..... .+++|.++|....--.+...+...+++.|. +++.+-+.
T Consensus       103 ~daiFI-GGg-~~i~~ile~~~~-~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is  162 (187)
T COG2242         103 PDAIFI-GGG-GNIEEILEAAWE-RLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQIS  162 (187)
T ss_pred             CCEEEE-CCC-CCHHHHHHHHHH-HcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEee
Confidence            444544 444 566666666543 458999999887777777788888888888 77766543

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=87.14  E-value=3.2  Score=30.52  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      .++-+.++++.+  .+.++|++++++|+..+++.... . ..+++|++....|+...
T Consensus        69 ~~la~~l~~~~~--~~~v~~~~SGseA~e~Alklar~-~-~gr~~Ii~~~~syHG~t  121 (364)
T PRK04013         69 EEMLEELSKWVN--YEYVYMGNSGTEAVEAALKFARL-Y-TGRKEIIAMTNAFHGRT  121 (364)
T ss_pred             HHHHHHHHhhcC--CCEEEEeCchHHHHHHHHHHHHH-H-hCCCEEEEECCccccCc
Confidence            344455555543  36899999999999999887653 1 34478887766565543

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=86.71  E-value=3.8  Score=30.58  Aligned_cols=55  Identities=11%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      ..++++.+++.+. ..+.+.|++++++|+..+++.... + ..+++||.....|+...
T Consensus        92 ~~~la~~L~~~~~-~~~~v~~~~sGseA~e~Aik~a~~-~-~g~~~ii~~~~~yHG~t  146 (426)
T PRK00062         92 EVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLARG-Y-TGRDKIIKFEGCYHGHA  146 (426)
T ss_pred             HHHHHHHHHHhCC-CCCEEEEecCHHHHHHHHHHHHHH-H-hCCCeEEEEcCccCCch
Confidence            3456666665542 357899999999999999887542 1 34567777666666643

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=86.60  E-value=0.94  Score=26.37  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTS   49 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~   49 (110)
                      --.+.|+.||++++++++.|++-+
T Consensus        14 sr~ei~~klA~~~~~~~~~ivv~~   37 (84)
T PF01282_consen   14 SRKEIREKLAAMLNVDPDLIVVFG   37 (84)
T ss_dssp             -HHHHHHHHHHHHTSTGCCEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEec
Confidence            345899999999999999987543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=83.59  E-value=7.9  Score=28.92  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ..++-+.|++++.-..+.+.|+++++||+..+++... .. ..+.+|+.-...|+.
T Consensus        88 ~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr-~~-tgr~~ii~~~~~yHG  141 (433)
T PRK08117         88 ILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAK-HV-TKRPYIISFTGCFHG  141 (433)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHH-Hh-cCCCeEEEECCCcCC
Confidence            3455566666653334689999999999999888432 22 344566654444443

>PRK10494 hypothetical protein; Provisional

Probab=83.55  E-value=7.2  Score=27.37  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         71 KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        71 ~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .-+++|..-|  ..++...+++.|+++.+.|+|
T Consensus       180 ~iiLVTsa~H--m~RA~~~f~~~Gl~v~p~Ptd  210 (259)
T PRK10494        180 PFLLVTSASH--LPRAMIFFQQEGLNPLPAPAN  210 (259)
T ss_pred             CEEEECCHHH--HHHHHHHHHHcCCceeecCCc
Confidence            3456554333  366777778899999999986

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=83.04  E-value=5.2  Score=29.18  Aligned_cols=57  Identities=16%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-hc-----cCCCEEEEcCCCChhH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-YK-----EKKKHVITTQTEHKCV   83 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~~-----~~g~~vl~~~~e~ps~   83 (110)
                      +...++++.++++++.  +.++|++++++|+..+++..... ..     .++++|+..+..+++.
T Consensus        73 ~~~~~~~~~l~~~~~~--~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~  135 (400)
T PTZ00125         73 DVLGLAEKYITDLFGY--DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGR  135 (400)
T ss_pred             HHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCc
Confidence            3566778888877654  58999999999999998865310 00     1346677666554443

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=83.03  E-value=16  Score=27.18  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC-cEEEe-CChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhH
Q psy17798         20 GWESEKAVEDARQEIATLINCDPK-EIIFT-SGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCV   83 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~-~i~~t-~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~   83 (110)
                      +......+.++++.+.++|+.+.+ +|+|. .|+|..+..+...|.    .++.  .|.+...+.-+.
T Consensus        45 sk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl----~~~~~~yv~~g~Ws~~a~  108 (365)
T COG1932          45 SKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLL----GKRGTDYVDTGAWSEFAI  108 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhh----cccCceeEeeeehhHhHH
Confidence            456678899999999999999654 67777 557888888888876    3443  466655544443

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=82.85  E-value=19  Score=27.46  Aligned_cols=79  Identities=19%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~  102 (110)
                      .+.+-+.-..++++.|.+-.+--+--++|.+-..++.+.... ..++++|+++..-||.....++.. +..|++++.++.
T Consensus       119 LqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~-k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~  197 (450)
T COG0403         119 LEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVT-KKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA  197 (450)
T ss_pred             HHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhh-cCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc
Confidence            355667778899999877655555556665555444443310 133689999999999999888877 567899888877


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       198 ~  198 (450)
T COG0403         198 D  198 (450)
T ss_pred             c
Confidence            6

>KOG1403|consensus

Probab=81.40  E-value=4.5  Score=29.63  Aligned_cols=46  Identities=22%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEE
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVI   74 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl   74 (110)
                      ..+.+|+..+.+=+  -+-+.|+++++||+.++++.. +.|.+..|.|.
T Consensus        88 lv~cA~~l~stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkhqDvIt  133 (452)
T KOG1403|consen   88 LVQCARTLTSTLPE--LSVCFFVNSGSEANDLALRLA-RNFTKHQDVIT  133 (452)
T ss_pred             HHHHHHHHhhcCCC--ceEEEEecCCchhhHHHHHHH-HhhcccCceEE
Confidence            33444444443322  356899999999999998854 44545556555

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=80.97  E-value=9.6  Score=28.68  Aligned_cols=50  Identities=18%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCC
Q psy17798         29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEH   80 (110)
Q Consensus        29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~   80 (110)
                      ++-+.+++... ..|.|+|+++++||+..++..... +..  .+.+||...-.+
T Consensus        88 ~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk-~~~~~~k~~Iia~~nsF  139 (404)
T COG4992          88 ELAEKLVELSP-FADRVFFCNSGAEANEAALKLARK-YTGDPEKSKIIAFENSF  139 (404)
T ss_pred             HHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCc
Confidence            34444444444 478999999999999998876542 211  234676554333

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=80.33  E-value=14  Score=25.03  Aligned_cols=57  Identities=14%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         43 KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        43 ~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+++|.++...=..++..+.    +.|-+|++..-..+........++..|.++..++.|
T Consensus        11 k~vlItGa~g~iG~~ia~~l~----~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D   67 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLA----QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD   67 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence            455555554433333334443    566666665443333333333344445556655554

>PRK12403 putative aminotransferase; Provisional

Probab=80.07  E-value=8.9  Score=29.07  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhH
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA   63 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~   63 (110)
                      ..++-+.+++++..+-+.++|+++++||+..+++...
T Consensus       100 ~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr  136 (460)
T PRK12403        100 VIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVR  136 (460)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHH
Confidence            3445555666655334789999999999999888664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
3lvj_A	423	Crystal Structure Of E.Coli Iscs-Tusa Complex (Form		4e-32
1p3w_B	404	X-Ray Crystal Structure Of E. Coli Iscs Length = 40		4e-32
4eb5_A	382	A. Fulgidus Iscs-Iscu Complex Structure Length = 38		1e-20
3vax_A	400	Crytal Structure Of Dnda From Streptomyces Lividans		1e-19
1ecx_A	384	Nifs-Like Protein Length = 384		7e-16
1eg5_A	384	Nifs-like Protein Length = 384		1e-14
3gzd_A	440	Human Selenocysteine Lyase, P1 Crystal Form Length		1e-08
3gzc_A	440	Structure Of Human Selenocysteine Lyase Length = 44		1e-08
3a9x_A	432	Crystal Structure Of Rat Selenocysteine Lyase Lengt		4e-08
1t3i_A	420	Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De		4e-04

>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 1   MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
           M+ ++T    +GNP SR+H +GW++E+AV+ AR +IA L+  DP+EI+FTSGATES+N+A
Sbjct: 42  MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 101
Query: 59  VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           +KG A FY++K KH+IT++TEHK VLD+CR LE EGF V    P + G
Sbjct: 102 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 149

>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 1   MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
           M+ ++T    +GNP SR+H +GW++E+AV+ AR +IA L+  DP+EI+FTSGATES+N+A
Sbjct: 23  MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 82
Query: 59  VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           +KG A FY++K KH+IT++TEHK VLD+CR LE EGF V    P + G
Sbjct: 83  IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 130

>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPY+T ++GNP S  H+YG+++ +AV++AR+++A L+N     ++FTSGATE+NN+A+ 
Sbjct: 20  MLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78
Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           G A     K KH++ +  EH  V++  + L+ +GF V
Sbjct: 79  GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115

>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           +L ++T  +GN  SR H YG  +++ VE AR+ +A+ ++ +P E+IFTSGATESNNIA+ 
Sbjct: 40  VLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALL 98
Query: 61  GVARF-YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           G+A +  +  ++H+IT+  EHK VL+    L G GF V    PG  G
Sbjct: 99  GLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSG 145

>pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M+ +    YGNP+S  H  G E+   +E AR+++A ++   P EI FTS ATES N  +K
Sbjct: 21  MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79
Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
            VA  ++++K+ +ITT  EHK VL++ + L  +GF V
Sbjct: 80  TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116

>pdb|1EG5|A Chain A, Nifs-like Protein Length = 384

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 9   YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE 68
           YGNP+S  H  G E+    E AR+++A ++   P EI FTS ATES N  +K VA  +++
Sbjct: 29  YGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEK 87
Query: 69  KKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           +K+ +ITT  EHK VL++ + L  +GF V
Sbjct: 88  RKRTIITTPIEHKAVLETXKYLSXKGFKV 116

>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M   +  A+GNP S  ++ G +++  +  AR+ +A +I   P++IIFTSG TESNN+ + 
Sbjct: 45  MTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIH 103
Query: 61  GVARFY-----------------KEKKKHVITTQTEHKCVLDSCRI 89
            V + +                 K  K H IT+  EH    DS R+
Sbjct: 104 SVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH----DSIRL 145

>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M   +  A+GNP S  ++ G +++  +  AR+ +A +I   P++IIFTSG TESNN+ + 
Sbjct: 45  MTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIH 103
Query: 61  GVARFY-----------------KEKKKHVITTQTEHKCVLDSCRI 89
            V + +                 K  K H IT+  EH    DS R+
Sbjct: 104 SVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH----DSIRL 145

>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 5   LTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVAR 64
           +  A+GNP S ++  G +++  +  AR  +A +I   P++IIFTSG TESNN+ +    R
Sbjct: 42  MKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVR 100
Query: 65  FYKEK-----------------KKHVITTQTEHKCVLDSCRI 89
            + E+                 + H IT   EH    DS R+
Sbjct: 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEH----DSIRL 138

>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAV 59
           ++ Y  N   N H   H     +  A E  R ++A  IN   P+EI++T  ATE+ N+  
Sbjct: 48  LMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 107
Query: 60  KGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL 98
                   +    +ITT  EH   L   +++  +   VL
Sbjct: 108 YSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	3e-66
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	3e-64
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	4e-64
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	3e-57
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	6e-14
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	3e-13
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	2e-11
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	3e-11
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	1e-10
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	2e-05
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	6e-05
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	4e-04

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423

 Score =  204 bits (521), Expect = 3e-66
 Identities = 57/99 (57%), Positives = 80/99 (80%), Gaps = 2/99 (2%)

Query: 1   MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
           M+ ++T    +GNP SR+H +GW++E+AV+ AR +IA L+  DP+EI+FTSGATES+N+A
Sbjct: 42  MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 101

Query: 59  VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           +KG A FY++K KH+IT++TEHK VLD+CR LE EGF V
Sbjct: 102 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV 140

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382

 Score =  198 bits (505), Expect = 3e-64
 Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           MLPY+T ++GNP S  H+YG+++ +AV++AR+++A L+N     ++FTSGATE+NN+A+ 
Sbjct: 20  MLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
           G A     K KH++ +  EH  V++  + L+ +GF V
Sbjct: 79  GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384

 Score =  197 bits (504), Expect = 4e-64
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M+ +    YGNP+S  H  G E+   +E AR+++A ++   P EI FTS ATES N  +K
Sbjct: 21  MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
            VA  ++++K+ +ITT  EHK VL++ + L  +GF V
Sbjct: 80  TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432

 Score =  181 bits (462), Expect = 3e-57
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 19/115 (16%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           +   +  A+GNP S ++  G +++  +  AR  +A +I   P++IIFTSG TESNN+ + 
Sbjct: 38  VTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIH 96

Query: 61  GVARFYKEK-----------------KKHVITTQTEHKCVLDSCRIL-EGEGFNV 97
              R + E+                 + H IT   EH  +      L E +   V
Sbjct: 97  STVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEV 151

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 6/81 (7%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           +         N      A     +  +   RQ +A   N DP  I  T   T   +I   
Sbjct: 36  ITAMYGYLQENGPFSIAANQHIQQ-LIAQLRQALAETFNVDPNTITITDNVTTGCDI--- 91

Query: 61  GVARFYKEKKK-HVITTQTEH 80
            V       +   ++ T  EH
Sbjct: 92  -VLWGLDWHQGDEILLTDCEH 111

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63
               +  +     H     S   ++ AR+ +A L+N DP  ++  +      ++    +A
Sbjct: 49  AFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSL----LA 103

Query: 64  RFYKEKKK---HVITTQTEH 80
                +      VI ++ + 
Sbjct: 104 EASSSRAGLGYEVIVSRLDD 123

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGV 62
           Y  N   N H   H     +  A E  R ++A  IN   P+EI++T  ATE+ N+     
Sbjct: 51  YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSW 110

Query: 63  ARFYKEKKKHVITTQTEH 80
                +    +ITT  EH
Sbjct: 111 GMNNLKAGDEIITTVMEH 128

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 1   MLPYLTNAYGNPHSRTHAY-GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAV 59
           +L +           T      ++    +    ++   + CD      T+GA E+     
Sbjct: 29  LLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFA-- 84

Query: 60  KGVARFYKEKKKHVITTQTEHK 81
             V     +K   V+  +  H 
Sbjct: 85  --VMHSLAKKDAWVVMDENCHY 104

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 4   YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
           +  + Y   H   H    ++ + +E+ R+  +  IN    +E++F  G TE  N+     
Sbjct: 46  FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 105

Query: 63  ARFYKEKKKHVITTQTEH 80
                    ++I +Q EH
Sbjct: 106 GNSNVRAGDNIIISQMEH 123

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 4   YLTNAYGNPHSRTHAY-GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62
            +   +GN   R+    GW      E     +ATLI     E++ T   +   N+  K +
Sbjct: 51  VIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSI--NLF-KVL 105

Query: 63  ARFYK------EKKKHVITTQTEH 80
           +   +       +++ ++T  +  
Sbjct: 106 SAALRVQATRSPERRVIVTETSNF 129

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 17  HAYGWESE-KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVIT 75
           H  G        E     +  ++  + KEI   +  T + ++ +    +   ++ K ++ 
Sbjct: 102 HEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYK-ILL 160

Query: 76  TQTEH 80
                
Sbjct: 161 EAKAF 165

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 31 RQEIATLINCDPKEIIFTSGATE 53
          R+ +A     +P+ ++ TSGATE
Sbjct: 67 REALAEEFAVEPESVVVTSGATE 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.69
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.65
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.63
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.62
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.6
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.58
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.58
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.52
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.52
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.45
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.43
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.4
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.34
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.3
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.28
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.28
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.27
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.23
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.23
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.22
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.21
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.2
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.19
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.18
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.17
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.17
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.16
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.16
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.16
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.15
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.15
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.14
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.12
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.12
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.11
1svv_A	359	Threonine aldolase; structural genomics, structura	99.1
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.09
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.09
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.08
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.08
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.08
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.08
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.07
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.07
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.05
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.05
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.05
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.04
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.03
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.03
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.03
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.02
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.02
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.02
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.02
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.01
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.01
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.01
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.0
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.99
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.99
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	98.98
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.98
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	98.98
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	98.97
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	98.96
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	98.96
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.96
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.95
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	98.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	98.95
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	98.94
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	98.94
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.94
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	98.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.93
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	98.93
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.93
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.93
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	98.92
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	98.92
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	98.91
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	98.91
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.91
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	98.91
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	98.91
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	98.91
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	98.9
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	98.89
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	98.89
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	98.89
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.89
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.89
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.88
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	98.88
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.88
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.88
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.87
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	98.87
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	98.86
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	98.86
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.86
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.86
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.86
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.86
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	98.86
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.85
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	98.85
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	98.85
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.85
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	98.85
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.85
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	98.84
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.84
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	98.84
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	98.83
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	98.83
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.83
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.82
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	98.82
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.81
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.81
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	98.81
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.81
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	98.81
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	98.81
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	98.81
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	98.8
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	98.8
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	98.8
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	98.8
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.79
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	98.79
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	98.78
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	98.78
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.78
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.78
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.77
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	98.77
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	98.76
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	98.75
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.75
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.75
3rq1_A	418	Aminotransferase class I and II; structural genomi	98.74
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	98.74
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.73
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.72
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	98.71
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	98.71
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.71
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.7
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	98.68
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	98.68
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.67
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	98.67
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.67
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	98.66
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	98.64
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.55
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.55
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	98.55
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	98.53
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	98.5
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.48
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.47
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.46
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	98.43
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	98.43
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.42
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	98.41
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	98.4
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	98.38
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	97.73
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.34
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.34
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	98.32
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.29
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.26
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	98.25
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.25
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	98.23
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.21
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.13
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.13
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.13
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.11
3pj0_A	359	LMO0305 protein; structural genomics, joint center	98.11
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	98.11
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	98.08
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	98.07
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.93
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	97.84
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	97.8
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	97.78
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	97.7
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	97.66
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	97.66
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.62
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	97.54
1z7d_A	433	Ornithine aminotransferase; structural genomics co	97.46
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	97.38
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	97.36
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	97.31
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	97.29
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.18
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	97.15
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	97.11
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	97.09
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.07
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	97.06
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	97.04
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.03
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.03
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	96.99
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	96.9
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.89
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	96.88
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	96.86
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	96.85
3hmu_A	472	Aminotransferase, class III; structural genomics,	96.71
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	96.61
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	96.32
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	95.05
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	94.62
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	94.21
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.54
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	88.18
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.63
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	83.29
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.38
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	82.13
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	81.7
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	81.34

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.69  E-value=6.9e-16  Score=108.54  Aligned_cols=106  Identities=39%  Similarity=0.688  Sum_probs=92.6

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++...++||+. .|..++...+.++++|+.+|+++++++++|++|+|+++|+.++++++.....++||+|+++..+||+
T Consensus        22 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~  100 (382)
T 4hvk_A           22 PYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS  100 (382)
T ss_dssp             HHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH
T ss_pred             HHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHH
Confidence            455567889987 7888888889999999999999999999999999999999999998863223689999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +...+..++..|++++.+|++++|.+|
T Consensus       101 ~~~~~~~~~~~g~~~~~v~~~~~~~~d  127 (382)
T 4hvk_A          101 VINPAKFLQKQGFEVEYIPVGKYGEVD  127 (382)
T ss_dssp             HHHHHHHHHHTTCEEEEECBCTTSCBC
T ss_pred             HHHHHHHHHhcCCEEEEeccCCCCCcC
Confidence            999988887889999999999887654

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.65  E-value=3.7e-15  Score=105.23  Aligned_cols=106  Identities=39%  Similarity=0.688  Sum_probs=89.0

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++.+.++||++ .|..+....+.++++|+.+|+++++++++|++|+|+++|+++++.++...+.++||+|+++..+||+
T Consensus        22 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~  100 (382)
T 4eb5_A           22 PYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMS  100 (382)
T ss_dssp             HHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHH
T ss_pred             HHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchH
Confidence            344455678886 6777777788999999999999999989999999999999999998862112589999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +...+..++..|++++.+|++++|.+|
T Consensus       101 ~~~~~~~~~~~g~~~~~v~~~~~~~~d  127 (382)
T 4eb5_A          101 VINPAKFLQKQGFEVEYIPVGKYGEVD  127 (382)
T ss_dssp             HHHHHHHHTTTTCEEEEECBCTTSCBC
T ss_pred             HHHHHHHHHhCCcEEEEeccCCCCccC
Confidence            988888776789999999998877554

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.63  E-value=2.9e-15  Score=106.61  Aligned_cols=106  Identities=42%  Similarity=0.707  Sum_probs=89.9

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-EEEEcCCCCh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK-HVITTQTEHK   81 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-~vl~~~~e~p   81 (110)
                      +++...++||++ .|..++...+.++++|+.+|+++++++++|++|+|+++|++++++++.....++|| +|+++..+||
T Consensus        42 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~  120 (400)
T 3vax_A           42 HWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHK  120 (400)
T ss_dssp             HHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCH
T ss_pred             HHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccH
Confidence            345556788986 67777777888999999999999999999999999999999999988521125799 9999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++...+..++..|++++.+|++++|.+|
T Consensus       121 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d  148 (400)
T 3vax_A          121 AVLEPLEHLAGRGFEVDFLTPGPSGRIS  148 (400)
T ss_dssp             HHHHHHHHHHTTTCEEEEECCCTTCCCC
T ss_pred             hHHHHHHHHHhcCCeEEEEccCCCCCcC
Confidence            9999998887789999999999887654

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.62  E-value=1.3e-14  Score=102.35  Aligned_cols=106  Identities=38%  Similarity=0.572  Sum_probs=89.2

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++...++||+. .+..++...+...++|+.+|+++++++++|++|+|+++|++++++++.....++||+|+++..+|++
T Consensus        23 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~  101 (384)
T 1eg5_A           23 VFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKA  101 (384)
T ss_dssp             HHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHH
T ss_pred             HHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchH
Confidence            344445678886 6788888889999999999999999999999999999999999998862112589999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +...+..++..|++++.+|++++|.+|
T Consensus       102 ~~~~~~~~~~~g~~~~~v~~~~~~~~d  128 (384)
T 1eg5_A          102 VLETMKYLSMKGFKVKYVPVDSRGVVK  128 (384)
T ss_dssp             HHHHHHHHHHTTCEEEECCBCTTSCBC
T ss_pred             HHHHHHHHHhcCCEEEEEccCCCCccC
Confidence            988887777789999999998777554

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.60  E-value=2e-14  Score=103.06  Aligned_cols=103  Identities=55%  Similarity=0.956  Sum_probs=89.1

Q ss_pred             hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHH
Q psy17798          7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDS   86 (110)
Q Consensus         7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~   86 (110)
                      ..++||+++.+..++...+.++++|+.+++++++++++|+||+|+++|+.++++++...+.++||+|+++..+||++...
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~  129 (423)
T 3lvm_A           50 GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDT  129 (423)
T ss_dssp             SCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHH
T ss_pred             ccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHH
Confidence            46778886467888888899999999999999999999999999999999999988732224799999999999999988


Q ss_pred             HHHHHhCCcEEEEecCCCCcccc
Q psy17798         87 CRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        87 ~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      +..++..|++++.+|++++|.+|
T Consensus       130 ~~~~~~~g~~~~~v~~~~~~~~d  152 (423)
T 3lvm_A          130 CRQLEREGFEVTYLAPQRNGIID  152 (423)
T ss_dssp             HHHHHHTTCEEEEECCCTTSCCC
T ss_pred             HHHHHHcCCEEEEeccCCCCccC
Confidence            88777789999999999877654

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2.3e-14  Score=102.22  Aligned_cols=105  Identities=13%  Similarity=0.176  Sum_probs=86.0

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +++...++||+. .|..+....+.++++|+.+|+++++++++|+||+|+|+++++++.++... +++||+|+++..+|++
T Consensus        48 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~-~~~gd~vi~~~~~~~~  125 (406)
T 3cai_A           48 TAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSR-AGLGYEVIVSRLDDEA  125 (406)
T ss_dssp             HHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGG-GBTTCEEEEETTSCGG
T ss_pred             HHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhc-cCCCCEEEEcCCccHH
Confidence            344445678864 67777777889999999999999999899999999999999999987210 2789999999999999


Q ss_pred             HHHHHHHH-HhCCcEEEEecCC-CCcccc
Q psy17798         83 VLDSCRIL-EGEGFNVLGSNPG-QGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l-~~~g~~v~~v~~~-~~G~~~  109 (110)
                      +..++..+ +..|++++.+|++ ++|.+|
T Consensus       126 ~~~~~~~~~~~~g~~v~~v~~~~~~~~~d  154 (406)
T 3cai_A          126 NIAPWLRAAHRYGAKVKWAEVDIETGELP  154 (406)
T ss_dssp             GTHHHHHHHHHHBCEEEEECCCTTTCCCC
T ss_pred             HHHHHHHHHHhcCCeEEEEecCcccCCcC
Confidence            98888776 4469999999998 566543

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.58  E-value=3e-14  Score=101.09  Aligned_cols=107  Identities=19%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      +++...++||+++.+..++...+...++|+.+|+++++ ++++|+||+|+|+|+++++.++.....++||+|+++..+|+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~  124 (406)
T 1kmj_A           45 EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHH  124 (406)
T ss_dssp             HHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCG
T ss_pred             HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccch
Confidence            34555667888756777777788999999999999999 78999999999999999999983111278999999999999


Q ss_pred             hHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      +....+..+ +..|++++.+|++++|.+|
T Consensus       125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d  153 (406)
T 1kmj_A          125 ANIVPWQMLCARVGAELRVIPLNPDGTLQ  153 (406)
T ss_dssp             GGTHHHHHHHHHHTCEEEEECBCTTSCBC
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCCCCCcC
Confidence            987776665 5579999999998776543

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.52  E-value=1.6e-13  Score=97.91  Aligned_cols=106  Identities=25%  Similarity=0.325  Sum_probs=82.5

Q ss_pred             hhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         4 ~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ++....+||+++.+..+....+.++++|+.+|+++++ ++++|+||+|+++|+.+++.++....+++||+|+++...|++
T Consensus        51 ~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~  130 (420)
T 1t3i_A           51 YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS  130 (420)
T ss_dssp             HHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGG
T ss_pred             HHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHH
Confidence            4444566787555666655567899999999999999 789999999999999999999821112789999999999999


Q ss_pred             HHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         83 VLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        83 ~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      ...++..+ +..|++++.+|++++|.+|
T Consensus       131 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d  158 (420)
T 1t3i_A          131 NLVPWQMVAAKTGAVLKFVQLDEQESFD  158 (420)
T ss_dssp             GTHHHHHHHHHHCCEEEEECBCTTSSBC
T ss_pred             HHHHHHHHHHhcCcEEEEeccCCCCCcC
Confidence            76665554 5579999999998776543

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.52  E-value=2.4e-13  Score=97.82  Aligned_cols=106  Identities=30%  Similarity=0.455  Sum_probs=85.5

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCC--------
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKK--------   70 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g--------   70 (110)
                      +++...++||+. .|..+....+.++++|+.+|+++++++++|+||+|+++|+++++.++...++    ++|        
T Consensus        40 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p  118 (432)
T 3a9z_A           40 EAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISP  118 (432)
T ss_dssp             HHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCcccccccc
Confidence            344456788885 6887877888999999999999999989999999999999999998752111    256        


Q ss_pred             -----CEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCCC-Ccccc
Q psy17798         71 -----KHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        71 -----~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~~-~G~~~  109 (110)
                           ++|+++..+|+++..+|..+ +..|++++.+|+++ +|.+|
T Consensus       119 ~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d  164 (432)
T 3a9z_A          119 EEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVE  164 (432)
T ss_dssp             ---CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCC
T ss_pred             ccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcC
Confidence                 58899999999999998887 45699999999986 56443

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=97.86  Aligned_cols=101  Identities=10%  Similarity=-0.019  Sum_probs=78.3

Q ss_pred             hhhhhhhcCCCCCcC---ChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798          2 LPYLTNAYGNPHSRT---HAYGWESEKAVEDARQEIATLINCDP-KEIIF-TSGATESNNIAVKGVARFYKEKKKHVITT   76 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~---~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~   76 (110)
                      .+++.+.++||.+ .   +..+....+.++++|+.+++++|+++ ++|+| |+|+|+++++++.++..  .++||+|++.
T Consensus        33 ~~~~~~~~~n~~s-~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~--~~~Gd~v~~~  109 (377)
T 3e77_A           33 QKELLDYKGVGIS-VLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG--LKAGRCADYV  109 (377)
T ss_dssp             HHTSSSGGGSSSC-TTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG--GSTTCEEEEC
T ss_pred             HHHHHhcccCCcc-ccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC--CCCCCeEEEE
Confidence            4566677788765 4   45577888999999999999999965 68999 58999999999999872  1348999888


Q ss_pred             CCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         77 QTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        77 ~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..+|.+. .+.+.+++.|+.++.+|++.++
T Consensus       110 ~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~  138 (377)
T 3e77_A          110 VTGAWSA-KAAEEAKKFGTINIVHPKLGSY  138 (377)
T ss_dssp             CCSHHHH-HHHHHHTTTSEEEECSCCCSSS
T ss_pred             ECCHHHH-HHHHHHHHhCCceEEeccCCCc
Confidence            7888774 3334447789999888887543

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.43  E-value=1.2e-12  Score=91.42  Aligned_cols=84  Identities=14%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ....+.+.++|+.+|+++++++++|++|+|+++|+++++.++.    ++||+|+++..+|+++. ....++..|++++.+
T Consensus        30 ~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v  104 (352)
T 1iug_A           30 EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF----APGERVLVPVYGKFSER-FYEIALEAGLVVERL  104 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc----CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEE
Confidence            3456678999999999999988999999999999999999985    79999999999999986 334446689999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |++++|.+|
T Consensus       105 ~~~~~~~~d  113 (352)
T 1iug_A          105 DYPYGDTPR  113 (352)
T ss_dssp             ECCTTCCCC
T ss_pred             eCCCCCCCC
Confidence            998777554

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.40  E-value=2.3e-13  Score=98.33  Aligned_cols=98  Identities=15%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             hhhhhhhcCCCCCcCC---hHHHHHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798          2 LPYLTNAYGNPHSRTH---AYGWESEKAVEDARQEIATLINCDP-KEIIF-TSGATESNNIAVKGVARFYKEKKKHVITT   76 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~---~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~   76 (110)
                      .+++.+.++||++ .|   ..+....+.++++|+.+|+++|+++ ++|+| |+|+|+++++++.++.    ++||+|++.
T Consensus        47 ~~~~~~~~~n~~s-~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~----~~gd~v~~~  121 (386)
T 3qm2_A           47 QQELCDWHGLGTS-VMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLL----GDKTTADYV  121 (386)
T ss_dssp             TCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHC----TTCCEEEEE
T ss_pred             HHHHHhccccCcc-ccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcc----CCCCeEEEE
Confidence            3456666788875 33   3456677899999999999999954 58999 6999999999999986    789988766


Q ss_pred             CCCChhHHHHHHH-HHhCCcEEEEecCC--CCcc
Q psy17798         77 QTEHKCVLDSCRI-LEGEGFNVLGSNPG--QGGN  107 (110)
Q Consensus        77 ~~e~ps~~~~~~~-l~~~g~~v~~v~~~--~~G~  107 (110)
                      ..++.+.  .|.. .++.| +|+.+|++  ++|.
T Consensus       122 ~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~  152 (386)
T 3qm2_A          122 DAGYWAA--SAIKEAKKYC-APQIIDAKITVDGK  152 (386)
T ss_dssp             ESSHHHH--HHHHHHTTTS-EEEEEECEEEETTE
T ss_pred             eCCHHHH--HHHHHHHHhC-CeEEEecCcccCCC
Confidence            5666664  3333 36778 99999998  6674

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.34  E-value=5.2e-12  Score=89.49  Aligned_cols=84  Identities=7%  Similarity=-0.094  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ....+.++++|+.+|+++++++++|++|+|+|+|++++++++.    ++||+|+++..+|+++. .....+..|++++.+
T Consensus        38 ~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v  112 (392)
T 2z9v_A           38 PAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI----SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEI  112 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC----CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc----CCCCEEEEecCCcccHH-HHHHHHHcCCceEEe
Confidence            3456678999999999999988999999999999999999885    79999999999999874 222335579999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |++++|.+|
T Consensus       113 ~~~~~~~~d  121 (392)
T 2z9v_A          113 EVPYNEAID  121 (392)
T ss_dssp             ECCTTSCCC
T ss_pred             eCCCCCCCC
Confidence            998877544

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=2.3e-11  Score=85.73  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh---------hccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF---------YKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~---------~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      ...+..+++++.+++++++++++|+||+|+++|+.+++.++...         ...+||+|+++...|+++...+..   
T Consensus        66 ~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~---  142 (397)
T 3f9t_A           66 GTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM---  142 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH---
Confidence            34667889999999999999999999999999999999988631         001489999999999998766644   


Q ss_pred             CCcEEEEecCCCCcccc
Q psy17798         93 EGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        93 ~g~~v~~v~~~~~G~~~  109 (110)
                      .|++++.+|++++|.+|
T Consensus       143 ~g~~~~~v~~~~~~~~d  159 (397)
T 3f9t_A          143 MDLEYIYAPIKEDYTID  159 (397)
T ss_dssp             HTCEEEEECBCTTSSBC
T ss_pred             cCceeEEEeeCCCCcCC
Confidence            59999999999877654

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.28  E-value=7.4e-12  Score=89.72  Aligned_cols=96  Identities=18%  Similarity=0.074  Sum_probs=71.4

Q ss_pred             hhhhhhhcCCCCCcCC---hHHHHHHHHHHHHHHHHHHHhCCC-CCcEEE-eCChHHHHHHHHHHhHHhhccCCC---EE
Q psy17798          2 LPYLTNAYGNPHSRTH---AYGWESEKAVEDARQEIATLINCD-PKEIIF-TSGATESNNIAVKGVARFYKEKKK---HV   73 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~---~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~---~v   73 (110)
                      .+++.+.++||.+ .|   ..+.+..+.++++|+.++++++++ +++|+| |+|+|+++++++.++.     ++|   +|
T Consensus        25 ~~~~~~~~~~~~s-~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-----~~~~~~~i   98 (361)
T 3m5u_A           25 QKELCDYQGRGYS-IMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-----LNGVCEYA   98 (361)
T ss_dssp             HHTSSSGGGSSSC-GGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----CSSCEEEE
T ss_pred             HHHHHhcccCCce-eeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----CCCeEEEE
Confidence            3456666778764 43   235678899999999999999996 568999 9999999999999875     445   34


Q ss_pred             EEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcc
Q psy17798         74 ITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGN  107 (110)
Q Consensus        74 l~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~  107 (110)
                      +++..+|+.    ....++.|++|++++++++|.
T Consensus        99 ~~~~~~~~~----~~~a~~~G~~v~~~~~~~~g~  128 (361)
T 3m5u_A           99 NTGVWTKKA----IKEAQILGVNVKTVASSEESN  128 (361)
T ss_dssp             ECSHHHHHH----HHHHHHTTCCEEEEEECTTTT
T ss_pred             eCCHHHHHH----HHHHHHcCCceEEEecccCcC
Confidence            544444432    223366799999999998773

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.28  E-value=3e-11  Score=85.33  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~  102 (110)
                      .....++|+.+++++++++++|+||+|+++|++++++++.   +++||+|+++...|+++...+..+ +..|++++.+|+
T Consensus        58 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~---~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  134 (390)
T 1elu_A           58 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV  134 (390)
T ss_dssp             HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC---CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcC
Confidence            4678999999999999999999999999999999999983   178999999999999998877665 557999999998


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       135 ~  135 (390)
T 1elu_A          135 A  135 (390)
T ss_dssp             G
T ss_pred             C
Confidence            6

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.27  E-value=3.6e-11  Score=84.24  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...+++|+.+|+++++++++|++|+|++++++++++++.    ++||+|+++...|+++...+   +..|++++.+|+++
T Consensus        51 ~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~  123 (354)
T 3ly1_A           51 NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA----SLEAQLVIPELTYGDGEHFA---KIAGMKVTKVKMLD  123 (354)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEESSSCTHHHHHH---HHTTCEEEEECCCT
T ss_pred             CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh----CCCCeEEECCCCchHHHHHH---HHcCCEEEEecCCC
Confidence            367899999999999999999999999999999999886    79999999998888876544   45799999999986


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      ++.+|
T Consensus       124 ~~~~d  128 (354)
T 3ly1_A          124 NWAFD  128 (354)
T ss_dssp             TSCCC
T ss_pred             CCCCC
Confidence            65544

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.23  E-value=8.8e-11  Score=83.27  Aligned_cols=82  Identities=9%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ....++++|+.+|++++++++ +|++|+|+++++.+++.++.    ++||+|+++...|+++. .....+..|++++.+|
T Consensus        49 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~  123 (396)
T 2ch1_A           49 LFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL----EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIE  123 (396)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc----CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEec
Confidence            345689999999999999888 89999999999999999886    79999999999999863 1233466899999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      ++++|.+|
T Consensus       124 ~~~~~~~d  131 (396)
T 2ch1_A          124 GPPDRPFS  131 (396)
T ss_dssp             CCTTSCCC
T ss_pred             CCCCCCCC
Confidence            98776544

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.23  E-value=8.7e-11  Score=83.21  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...+..+++|+.++++++++++ +|++|+|+++|+.+++.++.    ++||+|+++..+|+++. .....+..|++++.+
T Consensus        49 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v  123 (393)
T 2huf_A           49 ETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL----EDGDVILIGHTGHWGDR-SADMATRYGADVRVV  123 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh----CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEE
Confidence            3457889999999999999876 89999999999999999885    79999999999999853 222335679999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |++++|.+|
T Consensus       124 ~~~~~~~~d  132 (393)
T 2huf_A          124 KSKVGQSLS  132 (393)
T ss_dssp             ECCTTCCCC
T ss_pred             eCCCCCCCC
Confidence            998776543

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.22  E-value=6.8e-11  Score=83.18  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+.+|+++++++++|+||+|++++++++++++.    ++||+|+++...|+++....   +..|++++.+|+++
T Consensus        67 ~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~  139 (363)
T 3ffh_A           67 GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL----DTTTNTVMATPTFVQYRQNA---LIEGAEVREIPLLQ  139 (363)
T ss_dssp             --CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----STTCEEEEEESSCHHHHHHH---HHHTCEEEEEECCT
T ss_pred             cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc----cCCCEEEEcCCChHHHHHHH---HHcCCEEEEecCCC
Confidence            356899999999999999999999999999999999886    79999999988888866554   44699999999986


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      ++.+|
T Consensus       140 ~~~~d  144 (363)
T 3ffh_A          140 DGEHD  144 (363)
T ss_dssp             TSCCC
T ss_pred             CCCcC
Confidence            66544

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.21  E-value=1e-10  Score=82.32  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+++|+++++++++|+||+|+++|++++++++.    ++||+|+++...|+++...+   +..|++++.+|+++++
T Consensus        67 ~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~v~~~~~~  139 (360)
T 3hdo_A           67 SQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA----AEGEEIGYVHPSYSYYGTLA---EVQGARVRTFGLTGDF  139 (360)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCTHHHHHH---HHHTCEEEEECBCTTS
T ss_pred             hHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh----CCCCEEEEcCCChHHHHHHH---HHCCCEEEEeeCCCCC
Confidence            3689999999999999999999999999999999886    89999999988888876544   4569999999998764


Q ss_pred             c
Q psy17798        107 N  107 (110)
Q Consensus       107 ~  107 (110)
                      .
T Consensus       140 ~  140 (360)
T 3hdo_A          140 R  140 (360)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.20  E-value=9e-11  Score=82.87  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..++|+++|+++++++++|++|+|++++++++++++.    ++| |+|+++...|+++...+.   ..|++++.+|++++
T Consensus        60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~---~~g~~~~~v~~~~~  132 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAE---TIGVECRTVPTLDN  132 (356)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHH---HHTCEEEECCCCTT
T ss_pred             HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHH---HcCCEEEEeeCCCC
Confidence            6789999999999999999999999999999999886    789 999999888888776553   46999999998865


Q ss_pred             ccc
Q psy17798        106 GNF  108 (110)
Q Consensus       106 G~~  108 (110)
                      +.+
T Consensus       133 ~~~  135 (356)
T 1fg7_A          133 WQL  135 (356)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            443

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.19  E-value=1.1e-10  Score=82.10  Aligned_cols=72  Identities=10%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC-CCCc
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP-GQGG  106 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~-~~~G  106 (110)
                      .++|+.+|+++++++++|++|+|+++++++++.++.    ++||+|+++...|+++...+   +..|++++.+|+ ++++
T Consensus        68 ~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~  140 (365)
T 3get_A           68 IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL----NSKNAFLQAGVTFAMYEIYA---KQCGAKCYKTQSITHNL  140 (365)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEECSSCCTHHHHHH---HHHTCEEEECSSSSCCH
T ss_pred             HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh----CCCCEEEEeCCChHHHHHHH---HHcCCEEEEEecCCCCC
Confidence            489999999999999999999999999999999886    79999999888888776554   446999999998 4444

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.18  E-value=4.4e-10  Score=80.00  Aligned_cols=84  Identities=14%  Similarity=0.045  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEE-EeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         21 WESEKAVEDARQEIATLINCDPKEII-FTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~i~-~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ....+...++|+.+++++++++++++ +++|+|+++..++.++.    ++||+|+++...|+++. ....++..|++++.
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~  114 (416)
T 3isl_A           40 PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----EPEDDVLIPIYGRFGYL-LTEIAERYGANVHM  114 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----CCCCEEEEecCCcccHH-HHHHHHhcCCeeEE
Confidence            34467889999999999999888765 99999999999999885    89999999998888743 12233667999999


Q ss_pred             ecCCCCcccc
Q psy17798        100 SNPGQGGNFL  109 (110)
Q Consensus       100 v~~~~~G~~~  109 (110)
                      +|++++|.+|
T Consensus       115 v~~~~~~~~d  124 (416)
T 3isl_A          115 LECEWGTVFD  124 (416)
T ss_dssp             EECCTTCCCC
T ss_pred             EecCCCCCCC
Confidence            9999877654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.17  E-value=1.6e-10  Score=80.38  Aligned_cols=76  Identities=9%  Similarity=0.090  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+.+|+++++++++|+||+|+++++++++.++      +||+|+++...|+++...   ++..|++++.+|+++
T Consensus        51 ~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~------~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~  121 (337)
T 3p1t_A           51 DAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF------SSMRFVTAWPGFDGYRAR---IAVSGLRHFEIGLTD  121 (337)
T ss_dssp             THHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS------TTSEEEEESSSCSHHHHH---HTTSCCEEEEECBCT
T ss_pred             CchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc------CCCeEEEeCCCcHHHHHH---HHHcCCEEEEecCCC
Confidence            46789999999999999999999999999999998875      689999988888776543   456799999999987


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      ++.+|
T Consensus       122 ~~~~d  126 (337)
T 3p1t_A          122 DLLLD  126 (337)
T ss_dssp             TSSBC
T ss_pred             CCCCC
Confidence            65554

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.17  E-value=6e-11  Score=83.56  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         27 VEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        27 ~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ..++|+.+|+++++ ++++|+||+|++++++++++++.    ++||+|+++...|+++...+   +..|++++.+|++++
T Consensus        69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~  141 (367)
T 3euc_A           69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA----RPGAKVMAPVPGFVMYAMSA---QFAGLEFVGVPLRAD  141 (367)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC----CTTCEEEEEESCSCCSCHHH---HTTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc----CCCCEEEEcCCCHHHHHHHH---HHcCCeEEEecCCCC
Confidence            57899999999999 78999999999999999999886    79999999888888876544   557999999999887


Q ss_pred             cccc
Q psy17798        106 GNFL  109 (110)
Q Consensus       106 G~~~  109 (110)
                      +.+|
T Consensus       142 ~~~d  145 (367)
T 3euc_A          142 FTLD  145 (367)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6554

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.16  E-value=1.3e-10  Score=80.79  Aligned_cols=81  Identities=7%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         22 ESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...+...++|+.++++++++  +++|+||+|+++|++++++++.    +  |+|+++..+|+++ ......+..|++++.
T Consensus        30 ~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~  102 (353)
T 2yrr_A           30 EVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEV  102 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc----C--CcEEEEcCCCchH-HHHHHHHHcCCceEE
Confidence            44567899999999999985  7889999999999999998875    4  7899988899997 323334678999999


Q ss_pred             ecCCCCcccc
Q psy17798        100 SNPGQGGNFL  109 (110)
Q Consensus       100 v~~~~~G~~~  109 (110)
                      +|++++|.+|
T Consensus       103 v~~~~~~~~d  112 (353)
T 2yrr_A          103 LDFPPGEPVD  112 (353)
T ss_dssp             EECCTTSCCC
T ss_pred             EeCCCCCCCC
Confidence            9998877554

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.16  E-value=1.8e-10  Score=81.03  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         21 WESEKAVEDARQEIATLINCDP--KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~--~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      ....+.++++|+.+++++++++  ++|+||+|+++|++ ++.++.    ++||+|+++...|++.  .+..+ +..|+++
T Consensus        31 ~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~----~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~  103 (384)
T 3zrp_A           31 KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL----KPNDKILVVSNGVFGD--RWEQIFKRYPVNV  103 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC----CTTCEEEEECSSHHHH--HHHHHHTTSSCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc----CCCCEEEEecCCcchH--HHHHHHHHcCCcE
Confidence            3456788999999999999987  89999999999999 887775    8999999988888773  34344 5679999


Q ss_pred             EEecCCCCcccc
Q psy17798         98 LGSNPGQGGNFL  109 (110)
Q Consensus        98 ~~v~~~~~G~~~  109 (110)
                      +.+|++++|.+|
T Consensus       104 ~~v~~~~~~~~d  115 (384)
T 3zrp_A          104 KVLRPSPGDYVK  115 (384)
T ss_dssp             EEECCSTTCCCC
T ss_pred             EEecCCCCCCCC
Confidence            999999877554

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.16  E-value=1.4e-10  Score=81.53  Aligned_cols=83  Identities=17%  Similarity=0.202  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHHH-HHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         18 AYGWESEKAVEDARQE-IATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        18 ~~~~~~~~~~~~~R~~-la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..++...+...++|+. +|++++++  +|+||+|+|+|+.++++++.    ++||+|+++...|+++...+   +..|++
T Consensus        46 ~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~  116 (371)
T 2e7j_A           46 RLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----KKDAWVVMDENCHYSSYVAA---ERAGLN  116 (371)
T ss_dssp             -------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH---HHTTCE
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHHh----CCCCEEEEccCcchHHHHHH---HHcCCe
Confidence            3344456778999999 99999987  99999999999999999985    79999999999999988764   557999


Q ss_pred             EEEec--CCCCcccc
Q psy17798         97 VLGSN--PGQGGNFL  109 (110)
Q Consensus        97 v~~v~--~~~~G~~~  109 (110)
                      ++.+|  +++++.+|
T Consensus       117 ~~~v~~~~~~~~~~d  131 (371)
T 2e7j_A          117 IALVPKTDYPDYAIT  131 (371)
T ss_dssp             EEEECCCCTTTCCCC
T ss_pred             EEEeecccCCCCCcC
Confidence            99999  87665543

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.15  E-value=1e-10  Score=84.26  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH--HHHHHHhHHhhcc--C----------CCEEEEcCCCChhHHHHHHH
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESN--NIAVKGVARFYKE--K----------KKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~--~~i~~~l~~~~~~--~----------g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ...+.++|+++|+++++++++|++|+|+++++  +++++++.    .  +          ||+|++....|+++..   .
T Consensus        77 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~---~  149 (427)
T 3ppl_A           77 LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFS---I  149 (427)
T ss_dssp             SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHH---H
T ss_pred             CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHH---H
Confidence            34678999999999999999999999999999  58888876    4  5          8999987767766554   4


Q ss_pred             HHhCCcEEEEecCCCCc
Q psy17798         90 LEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        90 l~~~g~~v~~v~~~~~G  106 (110)
                      ++..|++++.+|++++|
T Consensus       150 ~~~~g~~~~~v~~~~~g  166 (427)
T 3ppl_A          150 TERFGFEMISVPMNEDG  166 (427)
T ss_dssp             HHHTTCEEEEEEEETTE
T ss_pred             HHHcCCEEEEeCCCCCC
Confidence            45679999999998876

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.15  E-value=3.5e-10  Score=79.56  Aligned_cols=78  Identities=10%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+.+|++++++  ++++|+|+++|+++++.++.. .+++||+|+++..+|+++..++.   ..|++++.+|++++
T Consensus        33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~-~~~~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~~  106 (375)
T 2fnu_A           33 RSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSE-FSADRNEIITTPISFVATANMLL---ESGYTPVFAGIKND  106 (375)
T ss_dssp             HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSC-CCTTSCEEEECSSSCTHHHHHHH---HTTCEEEECCBCTT
T ss_pred             HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcc-cCCCCCEEEECCCccHhHHHHHH---HCCCEEEEeccCCC
Confidence            5779999999999986  999999999999999999820 01789999999999999887764   47999999999877


Q ss_pred             cccc
Q psy17798        106 GNFL  109 (110)
Q Consensus       106 G~~~  109 (110)
                      |.+|
T Consensus       107 ~~~d  110 (375)
T 2fnu_A          107 GNID  110 (375)
T ss_dssp             SSBC
T ss_pred             CCCC
Confidence            6443

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.14  E-value=4.1e-10  Score=79.84  Aligned_cols=82  Identities=10%  Similarity=0.021  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ..+..+++++.+++++|++++ +|+||+|+++|++.++.++.    ++||+|+++...|++.. ....++..|++++.+|
T Consensus        65 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~  139 (393)
T 1vjo_A           65 FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV----EPGDVVLIGVAGYFGNR-LVDMAGRYGADVRTIS  139 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc----CCCCEEEEEcCChhHHH-HHHHHHHcCCceEEEe
Confidence            456788999999999999888 99999999999999999886    79999999988888821 1222356799999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      ++++|.+|
T Consensus       140 ~~~~~~~d  147 (393)
T 1vjo_A          140 KPWGEVFS  147 (393)
T ss_dssp             CCTTCCCC
T ss_pred             cCCCCCCC
Confidence            98776543

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.12  E-value=3.7e-10  Score=83.58  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh----ccCCC------EEEEcC
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY----KEKKK------HVITTQ   77 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~~~g~------~vl~~~   77 (110)
                      .+.||+...|..+....+...++++.+++++|+++++++||+|+|+|+.+++.++....    .++|+      +|+++.
T Consensus       131 ~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~  210 (515)
T 2jis_A          131 ESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSK  210 (515)
T ss_dssp             HHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET
T ss_pred             HHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC
Confidence            35577764566666667788899999999999998999999999999988887763211    02454      899999


Q ss_pred             CCChhHHHHHHHHHhCCc-EEEEecCCCCcccc
Q psy17798         78 TEHKCVLDSCRILEGEGF-NVLGSNPGQGGNFL  109 (110)
Q Consensus        78 ~e~ps~~~~~~~l~~~g~-~v~~v~~~~~G~~~  109 (110)
                      .+|+++..++..+. .|. +++.||++++|.+|
T Consensus       211 ~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~d  242 (515)
T 2jis_A          211 ECHYSIQKGAAFLG-LGTDSVRVVKADERGKMV  242 (515)
T ss_dssp             TSCTHHHHHHHHTT-SCGGGEEEECBCTTSCBC
T ss_pred             CccHHHHHHHHHcC-CCCCcEEEEecCCCCcCC
Confidence            99999998776541 233 89999998877664

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.12  E-value=5.6e-10  Score=79.74  Aligned_cols=77  Identities=9%  Similarity=0.020  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +...++|+.+|+++++  ++|++|+|+++|+++++.++.   .++||+|+++..+|+++..++..   .|++++.+|+++
T Consensus        32 ~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~---~~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~  103 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG---VKQDDIVLASSFTFIASVAPICY---LKAKPVFIDCDE  103 (394)
T ss_dssp             HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCGGGTHHHHH---TTCEEEEECBCT
T ss_pred             hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC---CCCCCEEEECCCccHHHHHHHHH---cCCEEEEEEeCC
Confidence            3578999999999987  689999999999999999982   17899999999999999877643   699999999987


Q ss_pred             Ccccc
Q psy17798        105 GGNFL  109 (110)
Q Consensus       105 ~G~~~  109 (110)
                      +|.+|
T Consensus       104 ~~~~d  108 (394)
T 1o69_A          104 TYNID  108 (394)
T ss_dssp             TSSBC
T ss_pred             CCCcC
Confidence            66554

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.11  E-value=1.2e-09  Score=77.70  Aligned_cols=83  Identities=8%  Similarity=0.036  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...+.+.++|+.+++++++++++ |++|+|+++|++.++.++.    ++||+|+++..+|++.. ....++..|++++.+
T Consensus        43 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v  117 (411)
T 3nnk_A           43 AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI----RPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTI  117 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc----CCCCEEEEecCCchHHH-HHHHHHHcCCeEEEE
Confidence            34567899999999999998766 8899999999999999885    89999999998888743 233446689999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |+++++.+|
T Consensus       118 ~~~~~~~~d  126 (411)
T 3nnk_A          118 EVPWGEVFT  126 (411)
T ss_dssp             ECCTTCCCC
T ss_pred             ecCCCCCCC
Confidence            998777654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.10  E-value=2.3e-10  Score=79.85  Aligned_cols=79  Identities=24%  Similarity=0.311  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+..+++++.+++++++++++|+||+|+++|+..+++++.    ++||+|+++...|+++..+ ..++..|++++.+|.+
T Consensus        48 ~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~  122 (359)
T 1svv_A           48 DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL----RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP  122 (359)
T ss_dssp             SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC----CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT
T ss_pred             cHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh----CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC
Confidence            3467789999999999999999999999999999999886    7899999999999988764 1235579999999986


Q ss_pred             CCccc
Q psy17798        104 QGGNF  108 (110)
Q Consensus       104 ~~G~~  108 (110)
                       ++.+
T Consensus       123 -~~~~  126 (359)
T 1svv_A          123 -DGKL  126 (359)
T ss_dssp             -TSCC
T ss_pred             -CCee
Confidence             4433

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.09  E-value=7.2e-10  Score=78.10  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ..+..+++++.+++++|++ +++|++|+|+++|+.+++.++.    ++||+|+++...|++.. ....++..|++++.+|
T Consensus        51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~  125 (386)
T 2dr1_A           51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV----SKGGKVLVTIIGAFGKR-YKEVVESNGRKAVVLE  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh----cCCCeEEEEcCCchhHH-HHHHHHHhCCceEEEe
Confidence            4667889999999999997 7789999999999999999875    79999999998998842 1223356799999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      ++++|.+|
T Consensus       126 ~~~~~~~d  133 (386)
T 2dr1_A          126 YEPGKAVK  133 (386)
T ss_dssp             CCTTCCCC
T ss_pred             cCCCCCCC
Confidence            98776543

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.09  E-value=3.4e-10  Score=80.13  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ...++|+.+++++++++++|+||+|+++|+.+++.++.    ++||+|+++...|+++...+   +..|++++.+|++
T Consensus        62 ~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~  132 (381)
T 1v2d_A           62 GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGDEVVVLEPFFDVYLPDA---FLAGAKARLVRLD  132 (381)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEEEECE
T ss_pred             CCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHH---HHcCCEEEEEeCC
Confidence            46789999999999999999999999999999999885    79999999999999977543   5579999999987

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.08  E-value=4.1e-10  Score=80.79  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH--HHHHHhHHhhcc--C---------CCEEEEcCCCChhHHHHHHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNN--IAVKGVARFYKE--K---------KKHVITTQTEHKCVLDSCRILE   91 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~--~i~~~l~~~~~~--~---------g~~vl~~~~e~ps~~~~~~~l~   91 (110)
                      ....++|+++|+++++++++|++|+|++++++  ++++++.    .  +         ||+|++....|+++...+   +
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~---~  142 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL---Q  142 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHH---H
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHH---H
Confidence            45779999999999999999999999999998  8888876    5  6         599998777777665544   4


Q ss_pred             hCCcEEEEecCCCCc
Q psy17798         92 GEGFNVLGSNPGQGG  106 (110)
Q Consensus        92 ~~g~~v~~v~~~~~G  106 (110)
                      ..|++++.+|++++|
T Consensus       143 ~~g~~~~~v~~~~~g  157 (423)
T 3ez1_A          143 TLGFELLTVDMQSDG  157 (423)
T ss_dssp             HHTCEEEEEEEETTE
T ss_pred             HcCCEEEeccCCCCC
Confidence            569999999998776

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.08  E-value=2e-10  Score=81.56  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ....++|+.+|++++      +++++|+||+|+++|++++++++.    ++||+|++....|+++...+   +..|++++
T Consensus        68 ~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~  140 (391)
T 3h14_A           68 LGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF----DSGDRVGIGAPGYPSYRQIL---RALGLVPV  140 (391)
T ss_dssp             -CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HHTTCEEE
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHH---HHcCCEEE
Confidence            346789999999885      688999999999999999999886    79999998888887766544   55799999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       141 ~v~~~~~~  148 (391)
T 3h14_A          141 DLPTAPEN  148 (391)
T ss_dssp             EEECCGGG
T ss_pred             EeecCccc
Confidence            99998654

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.08  E-value=3.2e-10  Score=80.77  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++|+.+|+++|+++++|++|+|+++++.++++++.    ++||+|++....|+++...+   +..|++++.+|++++
T Consensus        75 ~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~~~~~~~  147 (397)
T 2zyj_A           75 GYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL----DEGSPVLLEAPSYMGAIQAF---RLQGPRFLTVPAGEE  147 (397)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HTTCCEEEEEEEETT
T ss_pred             CCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHH---HHcCCEEEecCcCCC
Confidence            35789999999999989999999999999999999886    78999999888888766544   457999999998766


Q ss_pred             c
Q psy17798        106 G  106 (110)
Q Consensus       106 G  106 (110)
                      |
T Consensus       148 ~  148 (397)
T 2zyj_A          148 G  148 (397)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.08  E-value=1.3e-10  Score=81.49  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             CCCCCcCChH---HHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh-HHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         10 GNPHSRTHAY---GWESEKAVEDARQEIATLINCD-PKEIIFTSGA-TESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        10 ~n~~~~~~~~---~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~ga-t~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      .|++.+.|..   +....+..+++|+.+++++|++ +++|+||+|+ |+|+..++.++...- ++++.|+++..+|++. 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~-~~g~~vi~~~~~~~~~-  107 (360)
T 1w23_A           30 NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG-TIGNYVLTGSWSEKAL-  107 (360)
T ss_dssp             TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT-CEEEEEECSHHHHHHH-
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC-CcccEEEecchhHHHH-
Confidence            5666533322   4456678899999999999996 5799999999 999999998876200 2356777665555542 


Q ss_pred             HHHHHHHhCCcEEEEecCCC-Ccccc
Q psy17798         85 DSCRILEGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        85 ~~~~~l~~~g~~v~~v~~~~-~G~~~  109 (110)
                         ...+..| +++.+|+++ +|.+|
T Consensus       108 ---~~~~~~g-~~~~v~~~~~~~~~d  129 (360)
T 1w23_A          108 ---KEAKLLG-ETHIAASTKANSYQS  129 (360)
T ss_dssp             ---HHHHTTS-EEEEEEECGGGTSCS
T ss_pred             ---HHHHHhC-CeEEeecccccCcCC
Confidence               2235579 999999975 55443

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.07  E-value=5.7e-10  Score=80.87  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      +....+.+.++|+.+++++|+++++|++++|+|.++..+..++..   ++||+|+++..+||++..+|..+ +..|++++
T Consensus       103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~  179 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL  179 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence            445667899999999999999988999999999443433333322   68999999999999999998776 56899999


Q ss_pred             EecCCCCcccc
Q psy17798         99 GSNPGQGGNFL  109 (110)
Q Consensus        99 ~v~~~~~G~~~  109 (110)
                      .+|+ ++|.+|
T Consensus       180 ~v~~-~~~~~d  189 (438)
T 1wyu_A          180 TLPL-EGGRTP  189 (438)
T ss_dssp             EECC-BTTBCC
T ss_pred             EEcC-cCCccC
Confidence            9997 455544

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.07  E-value=5.7e-10  Score=81.34  Aligned_cols=74  Identities=11%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHh----CC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLI----NC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...++|+++|+++    |+ ++++|++|+|+++|++++++++.    ++||+|++....|+++...+   +..|++++.+
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~----~~Gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v  191 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL----NPGDIVVVEAPTYLAALQAF---NFYEPQYIQI  191 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HTTCCEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc----CCCCEEEEeCCChHHHHHHH---HHcCCEEEEe
Confidence            3568999999999    88 78999999999999999999986    79999999888888766544   4579999999


Q ss_pred             cCCCCc
Q psy17798        101 NPGQGG  106 (110)
Q Consensus       101 ~~~~~G  106 (110)
                      |++++|
T Consensus       192 ~~~~~g  197 (448)
T 3aow_A          192 PLDDEG  197 (448)
T ss_dssp             EEETTE
T ss_pred             ccCCCC
Confidence            998776

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.05  E-value=5.4e-10  Score=81.38  Aligned_cols=82  Identities=10%  Similarity=0.078  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE-----EEe
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV-----LGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v-----~~v  100 (110)
                      .+++|+.+|+++|+++++|+||+|+|+++++++.++... ..++++|+++..+||++..++..+ +..|+++     ..+
T Consensus       113 ~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~-~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~  191 (465)
T 3e9k_A          113 DESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKP-TPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK  191 (465)
T ss_dssp             THHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCC-CSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred             HHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccc-cCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence            356899999999999999999999999999999998510 124556999999999998888754 6678774     455


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |.+++|.+|
T Consensus       192 ~~~~~~~~d  200 (465)
T 3e9k_A          192 PREGEETLR  200 (465)
T ss_dssp             CCTTCSSCC
T ss_pred             cCCCCCccC
Confidence            666666654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.05  E-value=1.5e-09  Score=76.75  Aligned_cols=77  Identities=16%  Similarity=0.067  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +..+++|+.+|++++++  +++||+|+|+|++.++.++.   +++||+|+++..+|+++..++   +..|++++.+++++
T Consensus        36 ~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~---~~~gd~Vi~~~~~~~~~~~~~---~~~g~~~~~~~~~~  107 (373)
T 3frk_A           36 DEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYD---IGFGDEVIVPSNTFIATALAV---SYTGAKPIFVEPDI  107 (373)
T ss_dssp             HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEETTSCTHHHHHH---HHHSCEEEEECEET
T ss_pred             chHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCCcHHHHHHH---HHcCCEEEEEeccc
Confidence            46789999999999985  89999999999999999983   179999999999999988765   34599999999884


Q ss_pred             -Ccccc
Q psy17798        105 -GGNFL  109 (110)
Q Consensus       105 -~G~~~  109 (110)
                       ++.+|
T Consensus       108 ~~~~~d  113 (373)
T 3frk_A          108 RTYNID  113 (373)
T ss_dssp             TTTEEC
T ss_pred             cccCcC
Confidence             44443

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.05  E-value=8.6e-10  Score=77.92  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             HHHHHHHHHH------hCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         28 EDARQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        28 ~~~R~~la~~------l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .++|+.+|++      +++++++|++|+|++++++.+++++.    ++||+|+++...|+++...+   +..|++++.+|
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~---~~~g~~~~~v~  144 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG----GPGRTALGFQPSYSMHPILA---KGTHTEFIAVS  144 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----STTCEEEEEESSCTHHHHHH---HHTTCEEEEEE
T ss_pred             HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc----CCCCEEEEcCCChHHHHHHH---HHcCCEEEEec
Confidence            5789999998      56788999999999999999999886    78999999999999876644   45799999999


Q ss_pred             CCCCccc
Q psy17798        102 PGQGGNF  108 (110)
Q Consensus       102 ~~~~G~~  108 (110)
                      .++++.+
T Consensus       145 ~~~~~~~  151 (369)
T 3cq5_A          145 RGADFRI  151 (369)
T ss_dssp             CCTTSSC
T ss_pred             CCcCCCC
Confidence            8765443

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.04  E-value=2.7e-09  Score=77.58  Aligned_cols=85  Identities=8%  Similarity=-0.065  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCc-----EEEeCChHHHHHHHHHHhHHhhc----cCC-----CEEEEcCCCChhHHHH
Q psy17798         21 WESEKAVEDARQEIATLINCDPKE-----IIFTSGATESNNIAVKGVARFYK----EKK-----KHVITTQTEHKCVLDS   86 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~~-----i~~t~gat~a~~~i~~~l~~~~~----~~g-----~~vl~~~~e~ps~~~~   86 (110)
                      ....+...++++.+++++|+++++     ++||+|+|+|+.+++.++.....    ++|     ++|+++. .|+++...
T Consensus        77 ~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~  155 (452)
T 2dgk_A           77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKF  155 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHH
Confidence            355667889999999999998765     99999999999999888752110    144     6999999 99998766


Q ss_pred             HHHHHhCCcEEEEecCCC-Ccccc
Q psy17798         87 CRILEGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        87 ~~~l~~~g~~v~~v~~~~-~G~~~  109 (110)
                      .   +..|++++.||+++ +|.+|
T Consensus       156 ~---~~~G~~v~~v~~~~~~~~~d  176 (452)
T 2dgk_A          156 A---RYWDVELREIPMRPGQLFMD  176 (452)
T ss_dssp             H---HHTTCEEEECCCBTTBCSCC
T ss_pred             H---HHcCceEEEEecCCCCCeEC
Confidence            5   34699999999986 56554

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.03  E-value=2.9e-09  Score=75.70  Aligned_cols=80  Identities=11%  Similarity=0.062  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh---hccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF---YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~---~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      +..+++|+.+|++++++  +++|++|+|+|+++++.++...   ..++||+|+++..+|+++..++.   ..|++++.+|
T Consensus        34 ~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~---~~g~~~~~~~  108 (390)
T 3b8x_A           34 EYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ---QYGLRVKFVD  108 (390)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH---HTTCEEEEEC
T ss_pred             hHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEe
Confidence            46789999999999986  6888888899999999988100   02789999999999999988764   4799999999


Q ss_pred             CCCC-cccc
Q psy17798        102 PGQG-GNFL  109 (110)
Q Consensus       102 ~~~~-G~~~  109 (110)
                      ++++ +.+|
T Consensus       109 ~~~~~~~~d  117 (390)
T 3b8x_A          109 IDINTLNID  117 (390)
T ss_dssp             BCTTTCSBC
T ss_pred             cCccccCcC
Confidence            9875 5544

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.03  E-value=3e-09  Score=75.35  Aligned_cols=73  Identities=16%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-HHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGV-ARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l-~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ....++|+.+|++++++  ++++|+|+++|+++++.++ .    ++||+|+++..+|+++..++   +..|++++.+|++
T Consensus        39 ~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~  109 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI----GEGDEVITPSMTWVSTLNMI---VLLGANPVMVDVD  109 (393)
T ss_dssp             HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC----CTTCEEEEESSSCHHHHHHH---HHTTCEEEEECBC
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC----CCCCEEEeCCCccHhHHHHH---HHCCCEEEEEecc
Confidence            46779999999999974  8999999999999999998 4    78999999999999987655   4579999999998


Q ss_pred             CCc
Q psy17798        104 QGG  106 (110)
Q Consensus       104 ~~G  106 (110)
                      ++|
T Consensus       110 ~~~  112 (393)
T 1mdo_A          110 RDT  112 (393)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.03  E-value=1.4e-09  Score=77.17  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+.+|++++++ ++|++++| |+|+++++.++.   .++||+|+++..+|+++...+   +..|++++.+|+++
T Consensus        38 ~~~~~l~~~la~~~~~~-~~i~~~sG-t~al~~~l~~l~---~~~gd~Vi~~~~~~~~~~~~~---~~~g~~~~~v~~~~  109 (388)
T 1b9h_A           38 DEVNSFEREFAAHHGAA-HALAVTNG-THALELALQVMG---VGPGTEVIVPAFTFISSSQAA---QRLGAVTVPVDVDA  109 (388)
T ss_dssp             SHHHHHHHHHHHHTTCS-EEEEESCH-HHHHHHHHHHTT---CCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCT
T ss_pred             HHHHHHHHHHHHHhCCC-eEEEeCCH-HHHHHHHHHHcC---CCCcCEEEECCCccHHHHHHH---HHcCCEEEEEecCC
Confidence            46789999999999986 56777766 899999999982   178999999999999987655   45799999999986


Q ss_pred             C-cccc
Q psy17798        105 G-GNFL  109 (110)
Q Consensus       105 ~-G~~~  109 (110)
                      + +.+|
T Consensus       110 ~~~~~d  115 (388)
T 1b9h_A          110 ATYNLD  115 (388)
T ss_dssp             TTCCBC
T ss_pred             CcCCCC
Confidence            4 4443

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.02  E-value=2.1e-09  Score=79.24  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=73.2

Q ss_pred             CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhc----cCC-----C-EEEEcC
Q psy17798         10 GNPHSRTHAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYK----EKK-----K-HVITTQ   77 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~----~~g-----~-~vl~~~   77 (110)
                      .|+....|..+........++++.+++++|++  +++++||+|+|+|+.+++.++.....    ++|     + +|+++.
T Consensus       117 ~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~  196 (504)
T 2okj_A          117 ANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE  196 (504)
T ss_dssp             HCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET
T ss_pred             hccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC
Confidence            35543345555445556667789999999997  78999999999999999988752110    134     5 799999


Q ss_pred             CCChhHHHHHHHHHhCCc-EEEEecCCCCcccc
Q psy17798         78 TEHKCVLDSCRILEGEGF-NVLGSNPGQGGNFL  109 (110)
Q Consensus        78 ~e~ps~~~~~~~l~~~g~-~v~~v~~~~~G~~~  109 (110)
                      .+|+++..++..+. .|. +++.||++++|.+|
T Consensus       197 ~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~d  228 (504)
T 2okj_A          197 QSHYSIKKAGAALG-FGTDNVILIKCNERGKII  228 (504)
T ss_dssp             TSCTHHHHHHHHTT-SCGGGEEEECBCTTSCBC
T ss_pred             cchHHHHHHHHHcC-CCcccEEEEecCCCCCCC
Confidence            99999988876542 244 89999998877665

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.02  E-value=9.3e-10  Score=78.96  Aligned_cols=82  Identities=9%  Similarity=0.029  Sum_probs=70.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g   94 (110)
                      .|..++...+..+++|+.+|++++++  ++++++|+++|++.++.++.    ++||+|+++..+|+++...+..+ +..|
T Consensus        57 ~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g  130 (392)
T 3qhx_A           57 GYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWN  130 (392)
T ss_dssp             TBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence            46666666778999999999999975  79999999999999999875    79999999999999988777555 6789


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++++.+|++
T Consensus       131 ~~~~~v~~~  139 (392)
T 3qhx_A          131 VEYTPVALA  139 (392)
T ss_dssp             CEEEEECTT
T ss_pred             cEEEEeCCC
Confidence            999999875

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.02  E-value=2.9e-09  Score=76.16  Aligned_cols=77  Identities=10%  Similarity=-0.042  Sum_probs=64.5

Q ss_pred             HHHHHHHHH-HHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEI-ATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~l-a~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+.+ |++++ .++++++++|+|+|+++++.++.   +++||+|+++..+|+++..++   +..|++++++++++
T Consensus        37 ~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~---~~~Gd~Vi~~~~~~~~~~~~~---~~~G~~~~~v~~~~  109 (377)
T 3ju7_A           37 INQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK---RKKGKYALMPSFTFPATPLAA---IWCGLEPYFIDISI  109 (377)
T ss_dssp             HHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS---CTTCCEEEEESSSCTHHHHHH---HHTTCEEEEECBCT
T ss_pred             HHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCCcHHHHHHH---HHcCCEEEEEecCC
Confidence            467899999 99999 45789999999999999999873   289999999999999987665   45799999999984


Q ss_pred             -Ccccc
Q psy17798        105 -GGNFL  109 (110)
Q Consensus       105 -~G~~~  109 (110)
                       ++.+|
T Consensus       110 ~~~~~d  115 (377)
T 3ju7_A          110 DDWYMD  115 (377)
T ss_dssp             TTCSBC
T ss_pred             ccCCcC
Confidence             45444

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.02  E-value=9.7e-10  Score=78.43  Aligned_cols=76  Identities=16%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCE-EEEcCCCChhHHHHHHHHHh-C--CcE
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKH-VITTQTEHKCVLDSCRILEG-E--GFN   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~-vl~~~~e~ps~~~~~~~l~~-~--g~~   96 (110)
                      +.++++|+.+++++++++++|+||+|+++++..++.++..  +    ++||+ |+++..+|+++..++..+.+ .  |++
T Consensus        71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~--~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~  148 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR--VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT  148 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH--HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcc--cccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence            5778999999999999989999999999999888887641  2    47775 77778899998888776633 3  999


Q ss_pred             EEEecC
Q psy17798         97 VLGSNP  102 (110)
Q Consensus        97 v~~v~~  102 (110)
                      ++.+|+
T Consensus       149 ~~~v~~  154 (416)
T 1qz9_A          149 LRLVDS  154 (416)
T ss_dssp             EEEESS
T ss_pred             EEEeCc
Confidence            998884

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.01  E-value=1.5e-09  Score=76.56  Aligned_cols=73  Identities=12%  Similarity=-0.078  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHh----CC--CCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         27 VEDARQEIATLI----NC--DPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        27 ~~~~R~~la~~l----~~--~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ..++|+.+|+++    ++  ++++|+||+|++++++++++++.    ++  ||+|++....|+++....   +..|++++
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~----~~~~gd~vl~~~p~~~~~~~~~---~~~g~~~~  133 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL----FDYQNPTIAYPNPFYQIYEGAA---KFIKAKSL  133 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT----TTCSSCEEEEEESCCTHHHHHH---HHTTCEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc----CCCCCCEEEEecCCcHhHHHHH---HHcCCEEE
Confidence            467888888877    76  78999999999999999999986    78  999999888888766543   55799999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|+++++
T Consensus       134 ~~~~~~~~  141 (376)
T 3ezs_A          134 LMPLTKEN  141 (376)
T ss_dssp             EEECCGGG
T ss_pred             EcccCCCC
Confidence            99998764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.01  E-value=3.8e-09  Score=74.62  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +...++|+.+|++++++  ++++|+|+|+|+..++.++.   .++||+|+++..+|+++...+   +..|++++.+++++
T Consensus        35 ~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~---~~~gd~Vi~~~~~~~~~~~~~---~~~G~~~~~~~~~~  106 (367)
T 3nyt_A           35 PEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALG---VGPGDEVITPGFTYVATAETV---ALLGAKPVYVDIDP  106 (367)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCT
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhC---CCCcCEEEECCCccHHHHHHH---HHcCCEEEEEecCC
Confidence            35789999999999985  89999999999999999883   279999999999999987765   45699999999986


Q ss_pred             C-cccc
Q psy17798        105 G-GNFL  109 (110)
Q Consensus       105 ~-G~~~  109 (110)
                      + +.+|
T Consensus       107 ~~~~~d  112 (367)
T 3nyt_A          107 RTYNLD  112 (367)
T ss_dssp             TTCSBC
T ss_pred             ccCCcC
Confidence            5 5443

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.01  E-value=1.6e-09  Score=75.90  Aligned_cols=70  Identities=17%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC-CCCc
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP-GQGG  106 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~-~~~G  106 (110)
                      +++|+++|+++++++++|++|+|++++++++++++     . ||+|+++...|+++...+   +..|++++.+|+ ++++
T Consensus        53 ~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l-----~-gd~Vi~~~p~~~~~~~~~---~~~g~~~~~v~~~~~~~  123 (350)
T 3fkd_A           53 GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAF-----R-GSRSLIAIPSFAEYEDAC---RMYEHEVCFYPSNEDIG  123 (350)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHT-----T-TCEEEEEESCCHHHHHHH---HHTTCEEEEEETTSCGG
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHH-----C-CCEEEEeCCCcHHHHHHH---HHcCCeEEEEecCCccc
Confidence            47999999999999999999999999999999875     3 899999887777766443   557999999999 6633

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.00  E-value=9.8e-10  Score=79.11  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~~v~  101 (110)
                      ..+..+++|+.+|++++++  +++||+|+++|++.++.++.    ++||+|+++..+|+++...+.. ++..|++++.+|
T Consensus        54 ~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~  127 (412)
T 2cb1_A           54 KDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD  127 (412)
T ss_dssp             CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEEC
T ss_pred             CChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence            3467889999999999975  89999999999999999885    7999999999999998888776 466799999998


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      +|
T Consensus       128 ~~  129 (412)
T 2cb1_A          128 PE  129 (412)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.00  E-value=1.2e-09  Score=78.61  Aligned_cols=76  Identities=12%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH--HHHHHHhHHhhccC------------CCEEEEcCCCChhHHHHHHH
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESN--NIAVKGVARFYKEK------------KKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~--~~i~~~l~~~~~~~------------g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ..+..++|+++|+++++++++|++|+|+++++  +++++++.    .+            +++|++....|+++....  
T Consensus        75 ~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~--  148 (422)
T 3d6k_A           75 LLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT--  148 (422)
T ss_dssp             SSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH--
T ss_pred             CCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHH--
Confidence            34578999999999999999999999999997  77778776    33            347998777777766544  


Q ss_pred             HHhCCcEEEEecCCCCc
Q psy17798         90 LEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        90 l~~~g~~v~~v~~~~~G  106 (110)
                       +..|++++.+|++++|
T Consensus       149 -~~~g~~~~~v~~~~~g  164 (422)
T 3d6k_A          149 -EHFGFEMINVPMTDEG  164 (422)
T ss_dssp             -HHHTCEEEEEEEETTE
T ss_pred             -HHcCCEEEecCCCCCC
Confidence             4569999999998776

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.00  E-value=6.2e-12  Score=90.81  Aligned_cols=84  Identities=7%  Similarity=-0.020  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC--------------EEEEc
Q psy17798         17 HAYGWESEKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKK--------------HVITT   76 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~--------------~vl~~   76 (110)
                      +..++......+++|+++|+++      ++++++|+||+|+|+|++++++++.    ++||              +|+++
T Consensus        75 ~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~~~~~g~~~~vi~~  150 (444)
T 3if2_A           75 SMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG----GAFVNEHSQDKESKSVDKSILLP  150 (444)
T ss_dssp             HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS----EEEECC-------CEEEEEEEES
T ss_pred             hhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh----CCCccccccccccccccceEEEe
Confidence            3444444456789999999998      6789999999999999999999986    6776              78775


Q ss_pred             -CCCChhHHHHHH---HHHhCCcEEEEecCCC
Q psy17798         77 -QTEHKCVLDSCR---ILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        77 -~~e~ps~~~~~~---~l~~~g~~v~~v~~~~  104 (110)
                       ..+|+++.....   .+...|..++.+|+++
T Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (444)
T 3if2_A          151 LTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDG  182 (444)
T ss_dssp             SSSCCGGGTTCCSSSCCEEECCCEEEEEEETT
T ss_pred             CCCCccchhhcccccchhhccCceEEeccccc
Confidence             778888764321   2345688888888875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.00  E-value=8.8e-10  Score=78.36  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+++++++    +  +++++|++|+|++++++++++++.    ++||+|+++...|+++....   +..|++++.
T Consensus        69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~  141 (385)
T 1b5p_A           69 GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVIVLSPYWVSYPEMV---RFAGGVVVE  141 (385)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHH---HHcCCEEEE
Confidence            3568899999988    3  468999999999999999999886    79999999999998876554   457999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       142 v~~~~  146 (385)
T 1b5p_A          142 VETLP  146 (385)
T ss_dssp             EECCG
T ss_pred             eecCc
Confidence            99975

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.00  E-value=2.9e-09  Score=75.64  Aligned_cols=72  Identities=15%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCC-CEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKK-KHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g-~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+++++++    +  +++++|+||+|++++++++++++.    ++| |+|++....|+++...+   +..|++++.
T Consensus        78 ~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~----~~g~d~vl~~~p~~~~~~~~~---~~~g~~~~~  150 (398)
T 3ele_A           78 DVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT----SDAYDEFITIAPYFPEYKVFV---NAAGARLVE  150 (398)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CSTTCEEEEESSCCTHHHHHH---HHTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc----CCCCCEEEEeCCCchhhHHHH---HHcCCEEEE
Confidence            367888888887    3  688999999999999999999986    799 99999888888766544   457999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       151 v~~~~~  156 (398)
T 3ele_A          151 VPADTE  156 (398)
T ss_dssp             ECCCTT
T ss_pred             EecCCc
Confidence            999864

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.00  E-value=5e-09  Score=73.78  Aligned_cols=76  Identities=16%  Similarity=0.109  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-HHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGV-ARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l-~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +...++|+.+|++++++  ++++++|+++|+..++.++ .    ++||+|+++..+|+++...+   +..|++++.+|++
T Consensus        38 ~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~----~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~~  108 (374)
T 3uwc_A           38 AELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI----GAGDEVITCANTFIASVGAI---VQAGATPVLVDSE  108 (374)
T ss_dssp             HHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC----CTTCEEEEESSSCHHHHHHH---HHTTCEEEEECBC
T ss_pred             hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCCCEEEECCCccHHHHHHH---HHcCCEEEEEecC
Confidence            46789999999999976  8999999999999999988 4    79999999999999987654   4579999999998


Q ss_pred             CCcccc
Q psy17798        104 QGGNFL  109 (110)
Q Consensus       104 ~~G~~~  109 (110)
                      +++.+|
T Consensus       109 ~~~~~d  114 (374)
T 3uwc_A          109 NGYVID  114 (374)
T ss_dssp             TTSSBC
T ss_pred             CCCCcC
Confidence            655543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.99  E-value=9.5e-10  Score=79.18  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHh----C---CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLI----N---CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l----~---~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+++|+++    |   +++++|+||+|++++++++++++.    ++||+|++....|+++...+   +..|++++.
T Consensus        87 ~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~  159 (425)
T 1vp4_A           87 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAF---RQYLANFVV  159 (425)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HTTTCEEEE
T ss_pred             CHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHH---HHcCCEEEE
Confidence            568899999999    8   678999999999999999999886    78999999888888766544   457999999


Q ss_pred             ecCCCCc
Q psy17798        100 SNPGQGG  106 (110)
Q Consensus       100 v~~~~~G  106 (110)
                      +|++++|
T Consensus       160 v~~~~~~  166 (425)
T 1vp4_A          160 VPLEDDG  166 (425)
T ss_dssp             EEEETTE
T ss_pred             eccCCCC
Confidence            9987765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.99  E-value=1.3e-09  Score=77.69  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..++|+.+|+++    |  +++++|+||+|+++|++++++++.    ++||+|++....|+++...   ++..|++++.+
T Consensus        77 ~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v  149 (407)
T 2zc0_A           77 IPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI----DPGDVVITENPSYINTLLA---FEQLGAKIEGV  149 (407)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHH---HHTTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc----CCCCEEEEeCCChHHHHHH---HHHcCCEEEEc
Confidence            568999999998    7  578999999999999999999986    7899999887777776543   35679999999


Q ss_pred             cCCCCc
Q psy17798        101 NPGQGG  106 (110)
Q Consensus       101 ~~~~~G  106 (110)
                      |++++|
T Consensus       150 ~~~~~~  155 (407)
T 2zc0_A          150 PVDNDG  155 (407)
T ss_dssp             EEETTE
T ss_pred             ccCCCC
Confidence            987765

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=98.98  E-value=5.2e-09  Score=74.33  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +...++|+.+|++++++  ++++++|+|+|+..++.++.   +++||+|+++..+|+++..++.   ..|++++.+|+++
T Consensus        56 ~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~---~~~gd~vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~  127 (391)
T 3dr4_A           56 RFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMG---IGPGDEVIVPSLTYIASANSVT---YCGATPVLVDNDP  127 (391)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHT---CCTTCEEEEESSSCTHHHHHHH---HTTCEEEEECBCT
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCchHHHHHHHH---HCCCEEEEEecCc
Confidence            46789999999999986  89999999999999999883   2799999999999999877664   4699999999984


Q ss_pred             -Cccc
Q psy17798        105 -GGNF  108 (110)
Q Consensus       105 -~G~~  108 (110)
                       ++.+
T Consensus       128 ~~~~~  132 (391)
T 3dr4_A          128 RTFNL  132 (391)
T ss_dssp             TTCSB
T ss_pred             cccCc
Confidence             4443

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.98  E-value=5.7e-09  Score=72.79  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      +....+.++++|+.+++++++ ++++|++|+|+|+|+++++.++.    ++  .+++....|++. ......+..|++++
T Consensus        38 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~----~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~  110 (362)
T 3ffr_A           38 SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV----EK--KSFHCVNGSFSK-RFYEFAGELGREAY  110 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC----SS--EEEEEECSHHHH-HHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc----CC--cEEEEcCcHHHH-HHHHHHHHhCCCeE
Confidence            345567889999999999998 46899999999999999999986    55  555544555552 22223466799999


Q ss_pred             EecCCCCcccc
Q psy17798         99 GSNPGQGGNFL  109 (110)
Q Consensus        99 ~v~~~~~G~~~  109 (110)
                      .+|+++++.+|
T Consensus       111 ~v~~~~~~~~d  121 (362)
T 3ffr_A          111 KEEAAFGKGFY  121 (362)
T ss_dssp             EEECCTTCCCC
T ss_pred             EEecCCCCCCC
Confidence            99998766554

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=98.98  E-value=1.1e-09  Score=77.18  Aligned_cols=71  Identities=13%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         28 EDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        28 ~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .++|+.+|++++      +++++|+||+|++++++.+++++.    ++||+|+++...|+++...+   +..|++++.+|
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~  133 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT----PAQSKVIVPTPAYPPFFHLL---SATQREGIFID  133 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CTTCCEEEEESCCTHHHHHH---HHHTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcHhHHHHH---HHcCCEEEEcc
Confidence            468999999887      789999999999999999999886    79999999988888876554   44699999999


Q ss_pred             CCCC
Q psy17798        102 PGQG  105 (110)
Q Consensus       102 ~~~~  105 (110)
                      ++++
T Consensus       134 ~~~~  137 (377)
T 3fdb_A          134 ATGG  137 (377)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8754

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=98.97  E-value=6.5e-11  Score=87.22  Aligned_cols=101  Identities=15%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             hhhhhc--CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCc----EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798          4 YLTNAY--GNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE----IIFTSGATESNNIAVKGVARFYKEKKKHVITTQ   77 (110)
Q Consensus         4 ~~~~~~--~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~----i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~   77 (110)
                      .+.+.+  ++|+++.|..+....+..+.+|+.+++++|+++++    |++++|+ +++..++.++.    ++||+|++++
T Consensus        67 ~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all----~pGD~Vl~~~  141 (483)
T 1rv3_A           67 CLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV----EPHGRIMGLD  141 (483)
T ss_dssp             GGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT----CTTCEEEEEC
T ss_pred             HHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc----CCCCEEEEec
Confidence            344444  67776455555555667788999999999998754    8898888 77777788875    8999999999


Q ss_pred             CCChhHHHHHHHHH-----hCC--cEEEEecCC-CCcccc
Q psy17798         78 TEHKCVLDSCRILE-----GEG--FNVLGSNPG-QGGNFL  109 (110)
Q Consensus        78 ~e~ps~~~~~~~l~-----~~g--~~v~~v~~~-~~G~~~  109 (110)
                      .+|+++..++..+.     ..|  ++++.++++ ++|.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD  181 (483)
T 1rv3_A          142 LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYID  181 (483)
T ss_dssp             GGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBC
T ss_pred             CccCcCcchhhhhcccCcccccceEEEEECccccCCCcCC
Confidence            99999876542211     122  455555557 456554

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=98.96  E-value=3.6e-09  Score=77.89  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             CCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhc---------cC------CC-EE
Q psy17798         11 NPHSRTHAYGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYK---------EK------KK-HV   73 (110)
Q Consensus        11 n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~---------~~------g~-~v   73 (110)
                      |++...+..+........++|+.+++++|+++ ++++||+|+|+|+..++.++...+.         ++      |+ +|
T Consensus       126 n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v  205 (497)
T 2qma_A          126 NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRI  205 (497)
T ss_dssp             CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEE
T ss_pred             cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEE
Confidence            54432334334445556667999999999975 8999999999999999887421111         12      45 89


Q ss_pred             EEcCCCChhHHHHHHHHHhCCc-EEEEecCCCCcccc
Q psy17798         74 ITTQTEHKCVLDSCRILEGEGF-NVLGSNPGQGGNFL  109 (110)
Q Consensus        74 l~~~~e~ps~~~~~~~l~~~g~-~v~~v~~~~~G~~~  109 (110)
                      +++..+|+++..++..+. .|. +++.+|++++|.+|
T Consensus       206 ~~s~~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~d  241 (497)
T 2qma_A          206 VCSKKSHFTVQKSASWMG-LGEKAVMTVDANADGTMD  241 (497)
T ss_dssp             EEETTSCTHHHHHHHHTT-SCGGGEEEECBCTTSSBC
T ss_pred             EECCCchHHHHHHHHHcC-CCcccEEEEecCCCCcCC
Confidence            999999999988776542 244 79999998777665

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=98.96  E-value=2.5e-09  Score=76.89  Aligned_cols=72  Identities=10%  Similarity=0.041  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHh-----CCCCCc---EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh-CCcE
Q psy17798         26 AVEDARQEIATLI-----NCDPKE---IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG-EGFN   96 (110)
Q Consensus        26 ~~~~~R~~la~~l-----~~~~~~---i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~-~g~~   96 (110)
                      ...++|+++|+++     ++++++   |++|+|+++|++++++++.    ++||+|+++...|+++...   ++. .|++
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~---~~~~~g~~  161 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLV---FNTRNGAN  161 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHH---HTTTTCCE
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHH---HHHhcCCe
Confidence            4678999999999     888999   9999999999999999886    7999999988888876543   355 7999


Q ss_pred             EEEecCCC
Q psy17798         97 VLGSNPGQ  104 (110)
Q Consensus        97 v~~v~~~~  104 (110)
                      ++.+|+++
T Consensus       162 ~~~~~~~~  169 (430)
T 2x5f_A          162 LQTYPIFD  169 (430)
T ss_dssp             EEEECCBC
T ss_pred             EEEEeccC
Confidence            99999876

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.96  E-value=3.9e-09  Score=73.65  Aligned_cols=72  Identities=13%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhC---CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLIN---CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~---~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ...++|+.+|++++   +++++|+||+|++++++++++++       ||+|++. ..|+++...+   +..|++++.+|+
T Consensus        57 ~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-------gd~Vl~~-p~y~~~~~~~---~~~g~~~~~v~~  125 (335)
T 1uu1_A           57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-------DRSVFFP-PTYSCYRIFA---KAVGAKFLEVPL  125 (335)
T ss_dssp             SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS-------SEEEECS-SSCHHHHHHH---HHHTCEEEECCC
T ss_pred             chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh-------CCcEEEC-CCcHHHHHHH---HHcCCeEEEecc
Confidence            36789999999999   88999999999999999998874       7899987 7777765443   456999999999


Q ss_pred             CCCccc
Q psy17798        103 GQGGNF  108 (110)
Q Consensus       103 ~~~G~~  108 (110)
                      ++++.+
T Consensus       126 ~~~~~~  131 (335)
T 1uu1_A          126 TKDLRI  131 (335)
T ss_dssp             CTTSCC
T ss_pred             CCCCCC
Confidence            866444

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.95  E-value=2.7e-09  Score=75.54  Aligned_cols=71  Identities=14%  Similarity=0.031  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..++|+.+++++    +  +++++|+||+|+++|++++++++.    ++||+|+++...|+++...+   +..|++++.+
T Consensus        69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~v  141 (388)
T 1j32_A           69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----EPGDEVIIPAPFWVSYPEMV---KLAEGTPVIL  141 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHH---HHTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCCChhHHHHH---HHcCCEEEEe
Confidence            567888888877    4  468899999999999999999885    79999999999999977654   4579999999


Q ss_pred             cCCC
Q psy17798        101 NPGQ  104 (110)
Q Consensus       101 ~~~~  104 (110)
                      |+++
T Consensus       142 ~~~~  145 (388)
T 1j32_A          142 PTTV  145 (388)
T ss_dssp             CCCG
T ss_pred             cCCc
Confidence            9875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=98.95  E-value=1.3e-09  Score=77.93  Aligned_cols=73  Identities=15%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhC------------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         26 AVEDARQEIATLIN------------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        26 ~~~~~R~~la~~l~------------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ...++|+++|++++            +++++|++|+|++++++++++++.    ++||+|+++...|+++...+   +..
T Consensus        76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~  148 (416)
T 1bw0_A           76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC----DAGDYALVPQPGFPHYETVC---KAY  148 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHT
T ss_pred             CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC----CCCCEEEEcCCCcHhHHHHH---HHc
Confidence            46789999999998            788999999999999999999886    79999999999999876544   457


Q ss_pred             CcEEEEecCCCC
Q psy17798         94 GFNVLGSNPGQG  105 (110)
Q Consensus        94 g~~v~~v~~~~~  105 (110)
                      |++++.+|++++
T Consensus       149 g~~~~~v~~~~~  160 (416)
T 1bw0_A          149 GIGMHFYNCRPE  160 (416)
T ss_dssp             TCEEEEEEEEGG
T ss_pred             CcEEEEeecCcc
Confidence            999999998653

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=98.94  E-value=6.8e-09  Score=74.27  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHh----CC--CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----NC--DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~~--~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ....++|+.+|+++    |.  ++ ++|++|+|+++|++++++++.    ++||+|+++...|+++...+.   ..|+++
T Consensus        75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~----~~gd~Vl~~~p~~~~~~~~~~---~~g~~~  147 (412)
T 2x5d_A           75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL----DHGDTILVPNPSYPIHIYGAV---IAGAQV  147 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHH---HHTCEE
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHH---HcCCEE
Confidence            34678999999999    74  67 799999999999999999876    789999999999998776554   469999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       148 ~~~~~~~~  155 (412)
T 2x5d_A          148 RSVPLVPG  155 (412)
T ss_dssp             EEEECSTT
T ss_pred             EEeecCCc
Confidence            99999865

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=98.94  E-value=2.5e-09  Score=77.68  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+..+++|+.+|+++|++  ++++++|+++|+++++.++.    ++||+||++..+|+++...+..+ +..|+
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            4445545567889999999999974  56667888999999999886    79999999999999998888654 67899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++++++.+
T Consensus       148 ~v~~v~~~  155 (415)
T 2fq6_A          148 TTSWFDPL  155 (415)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            99999875

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.94  E-value=1.1e-08  Score=72.14  Aligned_cols=74  Identities=11%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHh----CC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLI----NC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ....++|+++|+++    |+  +++ +|+||+|++++++++++++.    ++||+|++....|+++...+   +..|+++
T Consensus        63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~  135 (376)
T 2dou_A           63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT----EPEDLLLLPEVAYPSYFGAA---RVASLRT  135 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHH---HHTTCEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc----CCCCEEEECCCCcHhHHHHH---HHcCCEE
Confidence            46788999999998    76  456 99999999999999999876    78999999888888876554   4579999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+ ++|
T Consensus       136 ~~~~~-~~~  143 (376)
T 2dou_A          136 FLIPL-RED  143 (376)
T ss_dssp             EEECB-CTT
T ss_pred             EEeeC-CCC
Confidence            99998 444

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=98.94  E-value=3.4e-09  Score=74.47  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         21 WESEKAVEDARQEIATLINCDPK-E-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~~~~~-~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ....+..+++|+.+++++|++++ + |++|+|+|++++.++.++.    ++||+|++....+.+.. ....++..| +++
T Consensus        45 ~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~  118 (362)
T 2c0r_A           45 AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL----KEGQTANYVMTGSWASK-ALKEAKLIG-DTH  118 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHHS-CEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcC----CCCCeEEEEecCcHhHH-HHHHHHHhC-CeE
Confidence            34566789999999999999765 6 4788999999999999986    79999987654444421 123335568 999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+|++
T Consensus       119 ~v~~~  123 (362)
T 2c0r_A          119 VAASS  123 (362)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            99886

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.94  E-value=3.7e-09  Score=75.19  Aligned_cols=90  Identities=11%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             hhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798          6 TNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus         6 ~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      ...++||+. .| .+....+.++++|+.++++++++ +.|+||+|+|+|++.++..+     .+||+|+++..+|++...
T Consensus        18 ~~~~~~~~~-~h-~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~~~   89 (379)
T 3ke3_A           18 SVVYTDRAL-NH-MSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSYRW   89 (379)
T ss_dssp             CSSCCTTSC-CT-TSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHHHH
T ss_pred             HHhccCCCC-CC-CCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhHHH
Confidence            345778874 34 46777889999999999999987 78999999999999987543     689999999888988532


Q ss_pred             HHHHHHhCC--cEEEEecCCC
Q psy17798         86 SCRILEGEG--FNVLGSNPGQ  104 (110)
Q Consensus        86 ~~~~l~~~g--~~v~~v~~~~  104 (110)
                       ...++..|  ++++.++++.
T Consensus        90 -~~~~~~~g~~~~~~~~~~~~  109 (379)
T 3ke3_A           90 -TQILEKGKFAKSSTVLTAER  109 (379)
T ss_dssp             -HHHHHHHCCSSEEEEEECEE
T ss_pred             -HHHHHHhCCCCceEEEeccc
Confidence             12224445  5888888754

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.93  E-value=7.7e-09  Score=73.24  Aligned_cols=71  Identities=23%  Similarity=0.176  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+++++++    |  ++++ +|++|+|++++++++++++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~  141 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV----RNGDEVICFDPSYDSYAPAI---ALSGGIVKR  141 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHHH---HHcCCEEEE
Confidence            567888888885    5  5788 99999999999999999885    78999999999999876544   457999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       142 v~~~~  146 (386)
T 1u08_A          142 MALQP  146 (386)
T ss_dssp             EECCT
T ss_pred             eecCc
Confidence            99976

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=98.93  E-value=4.6e-09  Score=75.23  Aligned_cols=88  Identities=10%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             cCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798          9 YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus         9 ~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      ++|+.. .|..++...+..+++|+.++++++++  +.++++++++|++.++.++.    ++||+|+++..+|+++...+.
T Consensus        50 ~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~----~~gd~vl~~~~~~~~~~~~~~  122 (398)
T 1gc0_A           50 FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLH  122 (398)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHH
T ss_pred             hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----cCCCEEEEeCCCchhHHHHHH
Confidence            456654 56666666778999999999999986  44555555799999999886    799999999999999988886


Q ss_pred             HH-HhCCcEEEEecCC
Q psy17798         89 IL-EGEGFNVLGSNPG  103 (110)
Q Consensus        89 ~l-~~~g~~v~~v~~~  103 (110)
                      .+ +..|++++.++.+
T Consensus       123 ~~~~~~g~~~~~~~~~  138 (398)
T 1gc0_A          123 HGIGEFGVKLRHVDMA  138 (398)
T ss_dssp             HTGGGGTCEEEEECTT
T ss_pred             HHHHHcCCEEEEECCC
Confidence            65 6679999999864

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.93  E-value=8.3e-09  Score=72.83  Aligned_cols=73  Identities=7%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         24 EKAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .+..+++++.++++++  +++++|+||+|+++|+++++.++.    ++||+|+++...|+++...+   +..|++++.+|
T Consensus        70 ~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~  142 (391)
T 4dq6_A           70 DSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT----KANDKIMIQEPVYSPFNSVV---KNNNRELIISP  142 (391)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CTTCEEEECSSCCTHHHHHH---HHTTCEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCHHHHHHH---HHcCCeEEeee
Confidence            4456777888888888  788999999999999999999886    79999999998888876654   45799999999


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      ++
T Consensus       143 ~~  144 (391)
T 4dq6_A          143 LQ  144 (391)
T ss_dssp             CE
T ss_pred             ee
Confidence            87

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=98.93  E-value=1.3e-08  Score=74.37  Aligned_cols=82  Identities=12%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...+..+++|+.+|+++|++++ ++||+|+|++.++ ++.++.. . .+++.||++..+|+++....   +..|++++.+
T Consensus       130 ~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~-~-~~~~~vi~~~~~h~s~~~~~---~~~G~~~~~v  203 (456)
T 2z67_A          130 IMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARK-K-YGSNVVIYPYASHKSPIKAV---SFVGMNMRLV  203 (456)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHH-H-HCCCEEEEECCCCHHHHHHH---HHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHH-h-cCCCEEEEECCCcHHHHHHH---HHcCCCceEE
Confidence            3567888999999999999877 9999999964443 5555431 1 26788998999999965543   4579999999


Q ss_pred             cC---CCCcccc
Q psy17798        101 NP---GQGGNFL  109 (110)
Q Consensus       101 ~~---~~~G~~~  109 (110)
                      |+   +++|.+|
T Consensus       204 ~~~~~~~~~~~d  215 (456)
T 2z67_A          204 ETVLDGDRVYVP  215 (456)
T ss_dssp             CCEEETTEEECC
T ss_pred             EEeccCCCCCcC
Confidence            87   5566554

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=98.92  E-value=5.3e-09  Score=74.06  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHh----C--CCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLI----N--CDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l----~--~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ...++|+.+|+++    |  +++++ |++|+|+++++.++++++.    ++||+|+++...|+++...+   +..|++++
T Consensus        64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~  136 (389)
T 1gd9_A           64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL----KDGEEVLIPTPAFVSYAPAV---ILAGGKPV  136 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC----CTTCEEEEEESCCTTHHHHH---HHHTCEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHH---HHCCCEEE
Confidence            3568899999988    7  57889 9999999999999999875    78999999999999987654   44699999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|+++
T Consensus       137 ~v~~~~  142 (389)
T 1gd9_A          137 EVPTYE  142 (389)
T ss_dssp             EEECCG
T ss_pred             EeccCC
Confidence            999875

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=98.92  E-value=1.5e-09  Score=77.67  Aligned_cols=73  Identities=12%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhC-----CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         28 EDARQEIATLIN-----CDP-KEIIFTSGATESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        28 ~~~R~~la~~l~-----~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .++|+++|++++     +++ ++|++|+|++++++++++++.    ++||    +|+++...|+++...+   +..|+++
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~---~~~g~~~  143 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEET---TYVRSGM  143 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHH---HTTCBTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHH---HHcCCeE
Confidence            789999999987     245 699999999999999999987    7899    9999998998876544   4578888


Q ss_pred             EEecCCCCcc
Q psy17798         98 LGSNPGQGGN  107 (110)
Q Consensus        98 ~~v~~~~~G~  107 (110)
                      +.+++|.+|+
T Consensus       144 ~~~~~d~~~l  153 (391)
T 3bwn_A          144 YKWEGDAWGF  153 (391)
T ss_dssp             EEEEEESTTC
T ss_pred             EEecCCHHHc
Confidence            8899887664

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=98.91  E-value=6.6e-09  Score=72.75  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ..++|+.+|+++++++++|+||+|++++++++++++        |+|+++...|+++...+   +..|++++.+|+++++
T Consensus        63 ~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------d~vi~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~  131 (361)
T 3ftb_A           63 YRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------EKILIIVPSYAEYEINA---KKHGVSVVFSYLDENM  131 (361)
T ss_dssp             CHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------SEEEEEESCCTHHHHHH---HHTTCEEEEEECCTTS
T ss_pred             HHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------CcEEEecCChHHHHHHH---HHcCCeEEEeecCccc
Confidence            468999999999999999999999999999998764        78999888888876554   4569999999998764


Q ss_pred             cc
Q psy17798        107 NF  108 (110)
Q Consensus       107 ~~  108 (110)
                      .+
T Consensus       132 ~~  133 (361)
T 3ftb_A          132 CI  133 (361)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=98.91  E-value=3e-09  Score=77.95  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g   94 (110)
                      .|..++...+..+++|+.+|+++|++ +.|+|++|+ +|++.++.++.    ++||+||++..+|+++...+.. ++..|
T Consensus       105 ~~~y~r~~~~~~~~l~~~lA~l~g~~-~~v~~~sG~-~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G  178 (445)
T 1qgn_A          105 SFEYGRYGNPTTVVLEEKISALEGAE-STLLMASGM-CASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  178 (445)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCS-EEEEESCHH-HHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC-cEEEeCCHH-HHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence            45556666678899999999999986 566666665 99999999876    7999999999999998776654 46789


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++++++|++
T Consensus       179 ~~v~~v~~~  187 (445)
T 1qgn_A          179 ITATVIDPA  187 (445)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEeCCC
Confidence            999999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.91  E-value=1.6e-09  Score=77.18  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHH--hCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILE--GEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~--~~g~~v~~v~~  102 (110)
                      ...+.+|+.+++++++++++|++++| ++|+.+++.++.    ++||+|+++..+|+++...+..+.  ..++.++.+++
T Consensus        71 ~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  145 (417)
T 3n0l_A           71 EIETLAIERCKKLFNCKFANVQPNSG-SQANQGVYAALI----NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV  145 (417)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHS----CTTCEEEEECC----------------CCSEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCcceEeccH-HHHHHHHHHHhc----CCCCEEEecccccccccchhhhhhhhcceeeeEeccC
Confidence            44456899999999998888999888 799999999886    899999999999988766444432  24566777888


Q ss_pred             CCCcccc
Q psy17798        103 GQGGNFL  109 (110)
Q Consensus       103 ~~~G~~~  109 (110)
                      +++|.+|
T Consensus       146 ~~~~~~d  152 (417)
T 3n0l_A          146 ELDGRID  152 (417)
T ss_dssp             CTTSSCC
T ss_pred             CCCCCcC
Confidence            7666544

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=98.91  E-value=4.8e-09  Score=74.98  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=66.9

Q ss_pred             cCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798          9 YGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus         9 ~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      +.|+.. .|..++...+..+++|+.++++++++  +.++++++++|++.++.++.    ++||+|+++..+|+++...+.
T Consensus        49 ~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~  121 (398)
T 2rfv_A           49 FALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLS  121 (398)
T ss_dssp             C------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHH
T ss_pred             hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHH
Confidence            345543 44445445678899999999999986  55566666799999999886    799999999999999988875


Q ss_pred             HH-HhCCcEEEEecCC
Q psy17798         89 IL-EGEGFNVLGSNPG  103 (110)
Q Consensus        89 ~l-~~~g~~v~~v~~~  103 (110)
                      .+ +..|++++.+|++
T Consensus       122 ~~~~~~g~~~~~v~~~  137 (398)
T 2rfv_A          122 HSMPKFGINVRFVDAA  137 (398)
T ss_dssp             THHHHTTCEEEEECTT
T ss_pred             HHHHHcCCEEEEeCCC
Confidence            55 6679999999875

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=98.91  E-value=1.5e-08  Score=72.91  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+.+|+++++  ++|++|+|+++|+++++.++.     +||+|+++..+|+++...+   +..|++++.+|+++
T Consensus        52 ~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~-----~gd~Vlv~~~~~~~~~~~~---~~~G~~~~~v~~~~  121 (424)
T 2po3_A           52 PLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG-----LTGEVIMPSMTFAATPHAL---RWIGLTPVFADIDP  121 (424)
T ss_dssp             HHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-----CCSEEEEESSSCTHHHHHH---HHTTCEEEEECBCT
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-----CCCEEEECCCccHHHHHHH---HHcCCEEEEEecCC
Confidence            4678999999999987  589999999999999999874     5799999999999987654   45799999999986


Q ss_pred             -Cccc
Q psy17798        105 -GGNF  108 (110)
Q Consensus       105 -~G~~  108 (110)
                       ++.+
T Consensus       122 ~~~~~  126 (424)
T 2po3_A          122 DTGNL  126 (424)
T ss_dssp             TTSSB
T ss_pred             CcCCc
Confidence             4433

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=98.91  E-value=5.5e-09  Score=75.21  Aligned_cols=78  Identities=18%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~v~   98 (110)
                      ++...+..+++|+.+|++++++  ++++++|+++|++.++.++.    ++||+|+++...|+++..+|.. ++..|++++
T Consensus        57 ~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~  130 (404)
T 1e5e_A           57 TRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGIQVD  130 (404)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred             cCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence            3333456779999999999985  67777777899999999876    7999999999999999887765 477899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+|++
T Consensus       131 ~v~~~  135 (404)
T 1e5e_A          131 FINTA  135 (404)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99985

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.90  E-value=2.4e-09  Score=76.94  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g   94 (110)
                      .|..++...+..+++|+.+|++++++ +.|+|+ ++++|+++++. +.    ++||+|+++..+|++....+.. ++..|
T Consensus        46 ~~~~~~~~~~~~~~lr~~la~~~g~~-~~i~~~-sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G  118 (393)
T 1n8p_A           46 TYEYSRSQNPNRENLERAVAALENAQ-YGLAFS-SGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHTTCS-EEEEES-CHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             CcceecCCChhHHHHHHHHHHHhCCC-cEEEEC-ChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence            35556555678899999999999986 445554 55899999998 65    7899999999999987766653 36679


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++++.+|++
T Consensus       119 ~~v~~v~~~  127 (393)
T 1n8p_A          119 VETSFTNDL  127 (393)
T ss_dssp             SCCEEESSH
T ss_pred             cEEEEeCCC
Confidence            999999874

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=98.89  E-value=9.8e-09  Score=73.51  Aligned_cols=74  Identities=15%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHh----CC--CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         26 AVEDARQEIATLI----NC--DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~--~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ...++|+++|+++    ++  +| ++|+||+|++++++++++++.    ++||+|++....|+++...+   +..|++++
T Consensus        86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~  158 (404)
T 2o1b_A           86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI----NPGDYVLLPDPGYTDYLAGV---LLADGKPV  158 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCSSHHHHH---HHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHH---HHCCCEEE
Confidence            4568999999988    85  45 799999999999999999886    78999999988898877654   45799999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|++++|
T Consensus       159 ~v~~~~~~  166 (404)
T 2o1b_A          159 PLNLEPPH  166 (404)
T ss_dssp             EEECCTTT
T ss_pred             EeccCccc
Confidence            99998655

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.89  E-value=5.9e-09  Score=73.93  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             HHH-HHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VED-ARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~-~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..+ +|+++|+++    +  +++++|++|+|++++++++++++.    ++||+|++....|+++...+   +..|++++.
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~~~~  137 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----ETGEGVVIHTPAYDAFYKAI---EGNQRTVMP  137 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----CTTCEEEEEESCCHHHHHHH---HHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHH---HHCCCEEEE
Confidence            345 889998887    5  678999999999999999999986    78999999888888876554   457999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       138 v~~~~~  143 (390)
T 1d2f_A          138 VALEKQ  143 (390)
T ss_dssp             EECEEC
T ss_pred             eecccC
Confidence            998754

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=98.89  E-value=4.6e-09  Score=75.02  Aligned_cols=72  Identities=10%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+.+|+++      ++++++|++|+|+++|+.++++++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        79 g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~  151 (406)
T 1xi9_A           79 GLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----DPGDEILVPGPSYPPYTGLV---KFYGGKPVE  151 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HHTTCEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCccHHHHH---HHcCCEEEE
Confidence            3568899999988      4678999999999999999999885    79999999999999876654   457999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       152 v~~~~  156 (406)
T 1xi9_A          152 YRTIE  156 (406)
T ss_dssp             EEEEG
T ss_pred             eecCC
Confidence            99875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.89  E-value=6.2e-09  Score=74.05  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHh----CC--CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI----NC--DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~--~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+.+|+++    |+  ++++|++|+|+++|+++++.++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~  151 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL----DPGDEVIVFSPVWVSYIPQI---ILAGGTVNV  151 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHH---HHcCCEEEE
Confidence            4578899999988    64  78999999999999999999885    78999999999999977654   457999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       152 v~~~~  156 (389)
T 1o4s_A          152 VETFM  156 (389)
T ss_dssp             EECCG
T ss_pred             EecCC
Confidence            99875

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.89  E-value=1.4e-08  Score=71.57  Aligned_cols=82  Identities=12%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ..+...++|+.++++++++++ +|+||+|+++|+..+++++.    ++||+|+++...|.+.. ....++..|++++.+|
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~  128 (393)
T 3kgw_A           54 MLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL----EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMI  128 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC----CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEe
Confidence            356788999999999998655 59999999999999999885    89999998765554321 2233366899999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      +++++.+|
T Consensus       129 ~~~~~~~d  136 (393)
T 3kgw_A          129 KKPGEHYT  136 (393)
T ss_dssp             CCTTCCCC
T ss_pred             CCCCCCCC
Confidence            98877554

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.88  E-value=1.2e-08  Score=71.95  Aligned_cols=72  Identities=13%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..+++++.+++.++  +++++|+||+|+++++++++.++.    ++||+|+++...|+++...+   +..|++++.+|+
T Consensus        66 ~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~  138 (391)
T 3dzz_A           66 EYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT----SPGDQILVQEPVYNMFYSVI---EGNGRRVISSDL  138 (391)
T ss_dssp             HHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS----CTTCEEEECSSCCHHHHHHH---HHTTCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC----CCCCeEEECCCCcHHHHHHH---HHcCCEEEEeee
Confidence            345556666666666  678999999999999999999986    89999999999998876654   457999999998


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       139 ~  139 (391)
T 3dzz_A          139 I  139 (391)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=98.88  E-value=8.2e-09  Score=73.32  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..++|+.+|+++    +  +++++|++|+|+++|++++++++.    ++||+|++....|+++...+   +..|++++.+
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~~  140 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KPGDGVIIITPVYYPFFMAI---KNQERKIIEC  140 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEECSSCCTHHHHHH---HTTTCEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc----CCCCEEEEcCCCcHhHHHHH---HHcCCEEEec
Confidence            457888888876    6  678999999999999999999886    78999999888888876544   4579999999


Q ss_pred             cCC-CCc
Q psy17798        101 NPG-QGG  106 (110)
Q Consensus       101 ~~~-~~G  106 (110)
                      |++ ++|
T Consensus       141 ~~~~~~g  147 (399)
T 1c7n_A          141 ELLEKDG  147 (399)
T ss_dssp             CCEEETT
T ss_pred             ccccCCC
Confidence            986 444

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.88  E-value=9e-09  Score=74.13  Aligned_cols=74  Identities=16%  Similarity=0.219  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHh----CCCC---------CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         26 AVEDARQEIATLI----NCDP---------KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~~~---------~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      ++.++|+++++++    +.+.         ++|++|+|++++++++++++.    ++||+|++....|+++...   ++.
T Consensus        79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~---~~~  151 (425)
T 2r2n_A           79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQS---LHP  151 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHH---HGG
T ss_pred             CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHH---HHH
Confidence            3456777777765    6542         699999999999999999986    7999999988777776544   456


Q ss_pred             CCcEEEEecCCCCc
Q psy17798         93 EGFNVLGSNPGQGG  106 (110)
Q Consensus        93 ~g~~v~~v~~~~~G  106 (110)
                      .|++++.+|++++|
T Consensus       152 ~g~~~~~v~~~~~~  165 (425)
T 2r2n_A          152 LGCNIINVASDESG  165 (425)
T ss_dssp             GTCEEEEECEETTE
T ss_pred             cCCEEEEeCcCCCC
Confidence            79999999987765

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=98.87  E-value=3.2e-08  Score=72.55  Aligned_cols=84  Identities=15%  Similarity=0.063  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhh-ccCC---CEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         23 SEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFY-KEKK---KHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~-~~~g---~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..+...++++.+++++|++  +++++||+|+++|+.+++.++.... .++|   ++|+++...|+++..++.   ..|++
T Consensus       105 ~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~---~~G~~  181 (497)
T 3mc6_A          105 VRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY---YFGMK  181 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH---HSCCE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH---HcCCe
Confidence            4556678899999999987  7899999999999999999875210 0145   899999999999876654   46999


Q ss_pred             EEEecCCC-Ccccc
Q psy17798         97 VLGSNPGQ-GGNFL  109 (110)
Q Consensus        97 v~~v~~~~-~G~~~  109 (110)
                      ++.||+++ +|.+|
T Consensus       182 ~~~v~~~~~~~~~d  195 (497)
T 3mc6_A          182 LRHVELDPTTYQVD  195 (497)
T ss_dssp             EEEECBCTTTCSBC
T ss_pred             EEEEecCcccCcCC
Confidence            99999987 66554

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=98.87  E-value=2.1e-08  Score=71.90  Aligned_cols=77  Identities=6%  Similarity=-0.064  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +..+++++.+++++|++  ++++++|+|+|+++++.++.   .++||+|+++..+|+++...+.   ..|++++.+|+++
T Consensus        42 ~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~  113 (418)
T 2c81_A           42 SMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALG---IGEGDEVIVPSLTWIATATAVL---NVNALPVFVDVEA  113 (418)
T ss_dssp             CHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCTHHHHHHH---HTTCEEEEECBCT
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCcCEEEECCCccHhHHHHHH---HcCCEEEEEecCC
Confidence            34778999999999986  67888889999999999983   1789999999999999987664   5799999999986


Q ss_pred             -Ccccc
Q psy17798        105 -GGNFL  109 (110)
Q Consensus       105 -~G~~~  109 (110)
                       ++.+|
T Consensus       114 ~~~~~d  119 (418)
T 2c81_A          114 DTYCID  119 (418)
T ss_dssp             TTCSBC
T ss_pred             CCCCcC
Confidence             44443

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=98.86  E-value=2.9e-08  Score=72.71  Aligned_cols=96  Identities=9%  Similarity=-0.012  Sum_probs=70.3

Q ss_pred             CCCCcCChHHHHHHHHHHHHHHHHHHHhCCCC---------CcEEEeCChHHHHHHHHHHhHHhhcc-----CC------
Q psy17798         11 NPHSRTHAYGWESEKAVEDARQEIATLINCDP---------KEIIFTSGATESNNIAVKGVARFYKE-----KK------   70 (110)
Q Consensus        11 n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~---------~~i~~t~gat~a~~~i~~~l~~~~~~-----~g------   70 (110)
                      |+....|..+........++++.+++++|+++         .+++||+|+|+|+..++.++....++     .|      
T Consensus        99 n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~  178 (486)
T 1js3_A           99 GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGA  178 (486)
T ss_dssp             CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcc
Confidence            55543455555566677789999999999864         46899999999999988776421111     03      


Q ss_pred             ---C-EEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         71 ---K-HVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        71 ---~-~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                         + .|+++..+|+++..+...   .|++++.||+|++|.+|
T Consensus       179 ~~~~~~v~~s~~~h~s~~~~~~~---~G~~v~~v~~d~~~~~d  218 (486)
T 1js3_A          179 VLEKLVAYASDQAHSSVERAGLI---GGVKLKAIPSDGKFAMR  218 (486)
T ss_dssp             HHHHEEEEEETTCCHHHHHHHHH---HTCEEEEECCCTTSCCC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHh---CCCceEEeecCCCCCCC
Confidence               2 378899999998776654   59999999998777665

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.86  E-value=5.1e-09  Score=74.51  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+...++|+.+|++++++ ++|+|++| ++|++++++++.    ++||+|+++..+|+++...+..+ +..|+
T Consensus        44 ~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG-t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           44 HDYSRRGNPTRDVVQRALAELEGGA-GAVLTNTG-MSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCC-cEEEeCCH-HHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            4445555567889999999999987 67777666 899999999875    78999999999999988777655 66799


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.+|.+
T Consensus       118 ~~~~~~~~  125 (386)
T 1cs1_A          118 RVLFVDQG  125 (386)
T ss_dssp             EEEEECTT
T ss_pred             EEEEeCCC
Confidence            99999874

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.86  E-value=1.2e-08  Score=71.81  Aligned_cols=70  Identities=14%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+.+|+++++++++|+||+|++++++++++++      +||+|++....|+++...+   +..|++++.+|+++
T Consensus        60 ~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~------~gd~vl~~~p~y~~~~~~~---~~~g~~~~~v~~~~  129 (364)
T 1lc5_A           60 DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL------KPRRAMIVTPGFAEYGRAL---AQSGCEIRRWSLRE  129 (364)
T ss_dssp             TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH------CCSEEEEEESCCTHHHHHH---HHTTCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc------CCCeEEEeCCCcHHHHHHH---HHcCCeEEEEeCCc
Confidence            3678999999999999999999999999999998875      3589999888888876554   45699999999875

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.86  E-value=7.4e-09  Score=72.21  Aligned_cols=79  Identities=10%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEc-CCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         25 KAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITT-QTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~-~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      +..+++|+.+|++++.+  +++|+||+|+++|++++++++.    ++||+|++. +..|++..  ....+..|++++.+|
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~----~~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~v~  110 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL----GPQDKVLIVSNGAYGARM--VEMAGLMGIAHHAYD  110 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC----CTTCCEEEEESSHHHHHH--HHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc----CCCCeEEEEeCCCccHHH--HHHHHHhCCceEEEe
Confidence            67889999999999932  2479999999999999999986    788887654 46676532  122345699999999


Q ss_pred             CCCCcccc
Q psy17798        102 PGQGGNFL  109 (110)
Q Consensus       102 ~~~~G~~~  109 (110)
                      ++++|.+|
T Consensus       111 ~~~~~~~d  118 (366)
T 1m32_A          111 CGEVARPD  118 (366)
T ss_dssp             CCTTSCCC
T ss_pred             CCCCCCCC
Confidence            98776554

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.86  E-value=2.2e-08  Score=70.93  Aligned_cols=74  Identities=16%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHh----C---CCCC-cEEEeCChHHHHHHHHHHhHHhhccCC-----CEEEEcCCCChhHHHHHHHHHhC
Q psy17798         27 VEDARQEIATLI----N---CDPK-EIIFTSGATESNNIAVKGVARFYKEKK-----KHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        27 ~~~~R~~la~~l----~---~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g-----~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ..++|+.+++++    +   ++++ +|+||+|++++++++++++.    ++|     |+|+++...|+++...+   +..
T Consensus        68 ~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~----~~g~~~~~d~vl~~~p~~~~~~~~~---~~~  140 (396)
T 3jtx_A           68 LPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL----NPVSDGIKPAIVSPNPFYQIYEGAT---LLG  140 (396)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC----CC---CCCCEEEEEESCCHHHHHHH---HHT
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh----CCCCccCCCEEEEcCCCcHhHHHHH---HHc
Confidence            457777777776    5   5588 99999999999999999886    675     79999888888766543   557


Q ss_pred             CcEEEEecCCCCcc
Q psy17798         94 GFNVLGSNPGQGGN  107 (110)
Q Consensus        94 g~~v~~v~~~~~G~  107 (110)
                      |++++.+|++++|.
T Consensus       141 g~~~~~v~~~~~g~  154 (396)
T 3jtx_A          141 GGEIHFANCPAPSF  154 (396)
T ss_dssp             TCEEEEEECCTTTC
T ss_pred             CCEEEEeecCCCCC
Confidence            99999999976663

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.86  E-value=1.8e-08  Score=70.83  Aligned_cols=82  Identities=12%  Similarity=0.081  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         23 SEKAVEDARQEIATLINCDPK-EIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~-~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..+..+++|+.++++++++++ +++| |+|++++++++++++.    ++||+|+++...+.+.. .....+..|++++.+
T Consensus        50 ~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v  124 (376)
T 3f0h_A           50 FSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF----TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVAL  124 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC----CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc----CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEE
Confidence            446788999999999999653 5555 8999999999999886    89999998765555532 223346679999999


Q ss_pred             cCCCCcccc
Q psy17798        101 NPGQGGNFL  109 (110)
Q Consensus       101 ~~~~~G~~~  109 (110)
                      |++.++.+|
T Consensus       125 ~~~~~~~~d  133 (376)
T 3f0h_A          125 KLEHGKKLT  133 (376)
T ss_dssp             ECCTTCCCC
T ss_pred             eCCCCCCCC
Confidence            998765443

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=98.86  E-value=4.4e-09  Score=74.16  Aligned_cols=72  Identities=21%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHh-CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLI-NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l-~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ...++|+.+|+++ ++++++|++|+|+++|+.++++++.    ++||+|++....|+++....   +..|++++.+|+++
T Consensus        64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~  136 (375)
T 3op7_A           64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIP---KSLGAEVDLWQIEE  136 (375)
T ss_dssp             CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHH---HHTTCEEEEEEEEG
T ss_pred             ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHH---HHcCCEEEEEeccc
Confidence            4578999999998 5789999999999999999999886    89999999988888876543   55799999999874

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.85  E-value=5.2e-08  Score=68.52  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhCC----CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         24 EKAVEDARQEIATLINC----DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~----~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...+.++|+.++++++.    ++++|+||+|+|+|+++++.++... .++||+|++....+..... ...++..|++++.
T Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~-~~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~  114 (385)
T 2bkw_A           37 VSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS-KAPNKNVLVVSTGTFSDRF-ADCLRSYGAQVDV  114 (385)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT-TCSCCEEEEECSSHHHHHH-HHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc-CCCCCeEEEEcCCcchHHH-HHHHHHcCCceEE
Confidence            44677888999998875    4689999999999999999987411 1588998776443332221 2344667999999


Q ss_pred             ecC-CCCcccc
Q psy17798        100 SNP-GQGGNFL  109 (110)
Q Consensus       100 v~~-~~~G~~~  109 (110)
                      +|+ +++|.+|
T Consensus       115 v~~~~~~~~~d  125 (385)
T 2bkw_A          115 VRPLKIGESVP  125 (385)
T ss_dssp             ECCSSTTSCCC
T ss_pred             EecCCCCCCCC
Confidence            999 7777554

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=98.85  E-value=8.9e-09  Score=74.43  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHh----CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE----
Q psy17798         25 KAVEDARQEIATLI----NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN----   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l----~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~----   96 (110)
                      ....++|+++|+++    ++++++|+||+|++++++.+ .++.    ++||+|+++...|+++...+..   .|.+    
T Consensus       111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~----~~gd~Vl~~~p~~~~~~~~~~~---~g~~g~~~  182 (449)
T 3qgu_A          111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMF----GSKPTVAVQDPSYPVYVDTSVM---MGMTGDHN  182 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----CSSSCEEEEESCCTHHHHHHHH---HTCSCCBC
T ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHh----CCCCEEEEcCCCChhHHHHHHH---cCCccccc
Confidence            45679999999998    78899999999999999998 7766    7999999999999988766544   4766    


Q ss_pred             ------EEEecCCCC
Q psy17798         97 ------VLGSNPGQG  105 (110)
Q Consensus        97 ------v~~v~~~~~  105 (110)
                            ++.+|++++
T Consensus       183 ~~~~~~~~~~~~~~~  197 (449)
T 3qgu_A          183 GTGFDGIEYMVCNPD  197 (449)
T ss_dssp             SSSBTTEEEEECCGG
T ss_pred             ccccceeEEEecccc
Confidence                  899998865

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=98.85  E-value=3e-08  Score=70.79  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +...++|+.+|++++++  ++++++|+++|+..+++++.   +++||+|+++...|+++...+   +..|++++.+|+++
T Consensus        63 ~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~---~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~  134 (399)
T 2oga_A           63 PELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLG---IGPGDEVIVPSHTYIASWLAV---SATGATPVPVEPHE  134 (399)
T ss_dssp             HHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCS
T ss_pred             hhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhC---CCCcCEEEECCCccHHHHHHH---HHCCCEEEEEecCC
Confidence            46788999999999975  78889999999999999982   178999999999999976654   45799999999986

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.85  E-value=7.1e-09  Score=74.19  Aligned_cols=72  Identities=11%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+.+|++++      +++++|++|+|+++|+.++++++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~  152 (409)
T 2gb3_A           80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA----NPGDEILVLEPFYANYNAFA---KIAGVKLIP  152 (409)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHHTCEEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHH---HHcCCEEEE
Confidence            35688999999884      567999999999999999999875    78999999999999887654   346899999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       153 v~~~~  157 (409)
T 2gb3_A          153 VTRRM  157 (409)
T ss_dssp             EECCG
T ss_pred             eccCC
Confidence            99875

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=98.85  E-value=8.1e-09  Score=74.49  Aligned_cols=72  Identities=19%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhC-----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLIN-----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l~-----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...++|+++|++++     +++++|++|+|+++|+.+++.++.    ++||+|+++...|+.+...+   +..|++++.+
T Consensus        97 g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~~  169 (427)
T 3dyd_A           97 GFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA----NPGQNILVPRPGFSLYKTLA---ESMGIEVKLY  169 (427)
T ss_dssp             CCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHTTCEEEEE
T ss_pred             CcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHH---HHcCCEEEEE
Confidence            46789999999998     788999999999999999999986    79999999888887765443   5579999999


Q ss_pred             cCCC
Q psy17798        101 NPGQ  104 (110)
Q Consensus       101 ~~~~  104 (110)
                      |.++
T Consensus       170 ~~~~  173 (427)
T 3dyd_A          170 NLLP  173 (427)
T ss_dssp             EEEG
T ss_pred             eccc
Confidence            8864

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.85  E-value=1.3e-08  Score=71.79  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+.+|++++      +++++|++|+|+++++.++++++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~  139 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII----DDGDEVLIQNPCYPCYKNFI---RFLGAKPVF  139 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHH---HHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHH---HHcCCEEEE
Confidence            35688999999885      678999999999999999999886    79999999999999987654   446888888


Q ss_pred             ecCC
Q psy17798        100 SNPG  103 (110)
Q Consensus       100 v~~~  103 (110)
                      +|+|
T Consensus       140 v~~d  143 (370)
T 2z61_A          140 CDFT  143 (370)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            8743

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=98.84  E-value=5e-09  Score=74.92  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhC------CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLIN------CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l~------~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+.++++++      +++ ++|+||+|++++++.++.++.    ++||+|++....|+++...+   +..|++++.
T Consensus        69 ~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~  141 (422)
T 3fvs_A           69 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV----DEGDEVIIIEPFFDCYEPMT---MMAGGRPVF  141 (422)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc----CCCCEEEEcCCCchhhHHHH---HHcCCEEEE
Confidence            4578888888876      667 799999999999999999886    89999999988898876544   457999999


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      +|+++
T Consensus       142 ~~~~~  146 (422)
T 3fvs_A          142 VSLKP  146 (422)
T ss_dssp             EECBC
T ss_pred             Eeccc
Confidence            99986

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=7.3e-09  Score=74.10  Aligned_cols=72  Identities=24%  Similarity=0.217  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+.+|+++    |  ++++ +|++|+|+++|++++++++.    ++||+|+++...|+++...+   +..|++++.
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~----~~gd~Vl~~~~~y~~~~~~~---~~~g~~~~~  136 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV----EPGSEVLLIEPFYDSYSPVV---AMAGAHRVT  136 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHH---HHcCCEEEE
Confidence            467888888886    6  4677 99999999999999999886    78999999999999976554   457999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       137 v~~~~~  142 (411)
T 2o0r_A          137 VPLVPD  142 (411)
T ss_dssp             EECEEE
T ss_pred             eecccc
Confidence            998753

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=98.84  E-value=4.8e-09  Score=75.38  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         27 VEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        27 ~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ..++|+++|++++        +++++|++|+|+++++.++++++.    ++||+|+++...|+++...+.  +..|++++
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~  158 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLI  158 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEE
Confidence            6789999999987        778999999999999999999886    799999999999998764321  24699999


Q ss_pred             EecCCC
Q psy17798         99 GSNPGQ  104 (110)
Q Consensus        99 ~v~~~~  104 (110)
                      .+|+++
T Consensus       159 ~v~~~~  164 (428)
T 1iay_A          159 PIHCES  164 (428)
T ss_dssp             EECCCT
T ss_pred             EeecCC
Confidence            999874

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=98.83  E-value=9.4e-09  Score=73.13  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhCCC------CCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLINCD------PKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~------~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      +.+++|+++|++++..      +++|++  |+|+++++++++.++.. +.++||+|+++...|+++...+   +..|+++
T Consensus        72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~-~~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~  147 (401)
T 7aat_A           72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQR-FFKFSRDVYLPKPSWGNHTPIF---RDAGLQL  147 (401)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEEEEEESCCTTHHHHH---HHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHH-hccCCCEEEEcCCCchhHHHHH---HHcCCee
Confidence            4678999999998643      899988  99999999999887642 2378999999998888876554   4579999


Q ss_pred             EEecCC
Q psy17798         98 LGSNPG  103 (110)
Q Consensus        98 ~~v~~~  103 (110)
                      +.+|++
T Consensus       148 ~~~~~~  153 (401)
T 7aat_A          148 QAYRYY  153 (401)
T ss_dssp             EEEECE
T ss_pred             Eeeeee
Confidence            999985

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=98.83  E-value=2.4e-08  Score=73.90  Aligned_cols=84  Identities=17%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhCCC--CCcEE---EeCChHHHHHHHHHHhHHhhc----cCCC-----EEEEcCCCChhHHHHHH
Q psy17798         23 SEKAVEDARQEIATLINCD--PKEII---FTSGATESNNIAVKGVARFYK----EKKK-----HVITTQTEHKCVLDSCR   88 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~--~~~i~---~t~gat~a~~~i~~~l~~~~~----~~g~-----~vl~~~~e~ps~~~~~~   88 (110)
                      ..+...++++.+++++|++  +++++   +|+|+++|+.+++.++.....    ++|+     +|+++...|+++.... 
T Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~-  171 (502)
T 3hbx_A           93 TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFA-  171 (502)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHH-
Confidence            5567778999999999997  66665   499999999999888753211    1255     9999999999977654 


Q ss_pred             HHHhCCcEEEEecCCCC-cccc
Q psy17798         89 ILEGEGFNVLGSNPGQG-GNFL  109 (110)
Q Consensus        89 ~l~~~g~~v~~v~~~~~-G~~~  109 (110)
                        +..|++++.||++++ |.+|
T Consensus       172 --~~~G~~~~~v~~~~~~~~~d  191 (502)
T 3hbx_A          172 --RYFEVELKEVKLSEGYYVMD  191 (502)
T ss_dssp             --HHTTCEEEEECCBTTBCSCC
T ss_pred             --HHcCceeEEEecCCCcCcCC
Confidence              446999999999875 5544

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.83  E-value=9.7e-09  Score=73.88  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHh----CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC-------
Q psy17798         26 AVEDARQEIATLI----NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG-------   94 (110)
Q Consensus        26 ~~~~~R~~la~~l----~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g-------   94 (110)
                      ...++|+++|+++    ++++++|+||+|++++++++ .++.    ++||+|+++...|+++...+......|       
T Consensus        99 g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l~----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  173 (432)
T 3ei9_A           99 GAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVMF----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ  173 (432)
T ss_dssp             CCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTT
T ss_pred             CCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHHc----CCCCEEEEeCCCCHHHHHHHHHcCCccccccccc
Confidence            4578999999997    78899999999999999975 5555    799999999999999988776654333       


Q ss_pred             --cEEEEecCCCC
Q psy17798         95 --FNVLGSNPGQG  105 (110)
Q Consensus        95 --~~v~~v~~~~~  105 (110)
                        .+++.+|++++
T Consensus       174 ~~~~~~~~~~~~~  186 (432)
T 3ei9_A          174 KYGNIEYMRCTPE  186 (432)
T ss_dssp             EETTCEEEECCGG
T ss_pred             ccCceEEeccCcc
Confidence              36788888754

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.82  E-value=4.8e-09  Score=75.65  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ..+++|+.+|++++        +++++|+||+|+++|+..++.++.    ++||.|+++...|+++...+.  ...|+++
T Consensus        87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~--~~~g~~~  160 (435)
T 3piu_A           87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLK--WRTGVEI  160 (435)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTT--TTTCCEE
T ss_pred             CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHH--HhcCCEE
Confidence            45789999999997        678999999999999999999886    899999999999998775442  1469999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+++++
T Consensus       161 ~~~~~~~~~  169 (435)
T 3piu_A          161 VPIHCTSSN  169 (435)
T ss_dssp             EEEECCGGG
T ss_pred             EEeeCCCcc
Confidence            999998644

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=98.82  E-value=3.9e-08  Score=72.96  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhHHhhc----------cCCCEEEEcCCCChhH
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCD--PKEIIFTSGATESNNIAVKGVARFYK----------EKKKHVITTQTEHKCV   83 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~--~~~i~~t~gat~a~~~i~~~l~~~~~----------~~g~~vl~~~~e~ps~   83 (110)
                      .|..+.......+++++.+++++|.+  +++++||+|+|+|+..++.++.....          .+++.|+++...|+++
T Consensus       126 ~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~  205 (511)
T 3vp6_A          126 TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  205 (511)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence            45555566667778999999999986  57899999999999988877653110          1567899999999999


Q ss_pred             HHHHHHHHhCCc---EEEEecCCCCcccc
Q psy17798         84 LDSCRILEGEGF---NVLGSNPGQGGNFL  109 (110)
Q Consensus        84 ~~~~~~l~~~g~---~v~~v~~~~~G~~~  109 (110)
                      ..++..   .|+   +++.||+|++|.+|
T Consensus       206 ~~~~~~---~g~g~~~~~~v~~d~~~~~d  231 (511)
T 3vp6_A          206 KKAGAA---LGFGTDNVILIKCNERGKII  231 (511)
T ss_dssp             HHHHHH---TTSCGGGEEEECBCTTSCBC
T ss_pred             HHHHHH---cCCCCCcEEEeecCCCCccC
Confidence            877654   455   89999999887765

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.81  E-value=6.6e-09  Score=75.15  Aligned_cols=81  Identities=11%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+..+++|+.+|++++++ +.|+++ ++++|++.++.++.    ++||+|+++..+|+++..+|..+ +..|+
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~-~~v~~~-sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~  123 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGK-AALATA-SGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGI  123 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCS-EEEEES-SHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTC
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC-ceEEec-CHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            3333334457889999999999986 345554 45999999999875    79999999999999999888654 66899


Q ss_pred             EEEEe-cCC
Q psy17798         96 NVLGS-NPG  103 (110)
Q Consensus        96 ~v~~v-~~~  103 (110)
                      +++.+ +.+
T Consensus       124 ~~~~~~~~~  132 (421)
T 2ctz_A          124 EVRFTSREE  132 (421)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEECCCC
Confidence            99999 764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.81  E-value=2.7e-08  Score=73.46  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCC--CcE--EEeCChHHHHHHHHHHhHHhhc-c---CCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         22 ESEKAVEDARQEIATLINCDP--KEI--IFTSGATESNNIAVKGVARFYK-E---KKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~--~~i--~~t~gat~a~~~i~~~l~~~~~-~---~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ...+...++++.+++++|+++  +++  +||+|+++|+.++++++..... +   ++|+|+++...|+++......   .
T Consensus       136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~---~  212 (514)
T 3mad_A          136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQY---F  212 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHH---c
Confidence            344566678899999999864  788  9999999999999998862100 0   128999999999997766544   5


Q ss_pred             CcEEEEecCCCCcccc
Q psy17798         94 GFNVLGSNPGQGGNFL  109 (110)
Q Consensus        94 g~~v~~v~~~~~G~~~  109 (110)
                      |++++.+|++++|.+|
T Consensus       213 G~~v~~v~~~~~~~~d  228 (514)
T 3mad_A          213 GIKLVRTPLDADYRAD  228 (514)
T ss_dssp             TCEEEEECBCTTSCBC
T ss_pred             CCeeEEeeeCCCCCCC
Confidence            9999999999877654

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=98.81  E-value=1.5e-08  Score=74.01  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             CCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH
Q psy17798         11 NPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC   87 (110)
Q Consensus        11 n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~   87 (110)
                      +++. .|..++.   ..+++++.+|+++|++.. +++  ++|+++|+..++.++.    ++||+|+++. ..|+++...+
T Consensus        63 ~~~~-gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pGD~Vl~~~~~~y~~~~~~~  133 (427)
T 3i16_A           63 TNSS-GYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPGNTMLSVCGEPYDTLHDVI  133 (427)
T ss_dssp             CCCC-TTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTTCEEEESSSSCCGGGHHHH
T ss_pred             CCCC-CCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCCCEEEEeCCCccHHHHHHH
Confidence            3443 4554443   367788899999998654 654  7888999999999876    8999999998 8888877555


Q ss_pred             --------HHHHhCCcEEEEecCCCCcccc
Q psy17798         88 --------RILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        88 --------~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                              ..++..|++++.+|++++|.+|
T Consensus       134 g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D  163 (427)
T 3i16_A          134 GITENSNMGSLKEFGINYKQVDLKEDGKPN  163 (427)
T ss_dssp             TCSCCCSSCCTGGGTCEEEECCCCTTSSCC
T ss_pred             hccccchHHHHHHcCCEEEEecCccCCCcC
Confidence                    4456679999999998888654

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.81  E-value=7.8e-09  Score=73.57  Aligned_cols=73  Identities=11%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+..+++|+.+|++++. +++|+||+|++ ++..++..+..  ..+||+|+++..+|+++..++.   ..|++++.+|.+
T Consensus        90 ~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~--~~~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~v~~~  162 (401)
T 2bwn_A           90 TAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRV--LFPGLIIYSDSLNHASMIEGIK---RNAGPKRIFRHN  162 (401)
T ss_dssp             BHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHH--HSTTCEEEEETTCCHHHHHHHH---HSCCCEEEECTT
T ss_pred             hHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhc--CCCCCEEEECchhhHHHHHHHH---HcCCeEEEEcCC
Confidence            45788999999999997 58899988877 66555555431  1589999999999999987763   479999999875

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=98.81  E-value=1.1e-08  Score=75.55  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|++++++++      +++++|++|+|+++++.+++.++..   .+||.|+++...|+++...+   +..|++++
T Consensus       134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~  207 (500)
T 3tcm_A          134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR---NEKDGILVPIPQYPLYSASI---ALHGGALV  207 (500)
T ss_dssp             TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC---STTEEEEEEESCCTHHHHHH---HHTTCEEE
T ss_pred             cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC---CCCCEEEEeCCCcHhHHHHH---HHcCCEEE
Confidence            456788999998874      6889999999999999999998752   58999999999998877655   44699999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|++++
T Consensus       208 ~~~~~~~  214 (500)
T 3tcm_A          208 PYYLNES  214 (500)
T ss_dssp             EEECBTT
T ss_pred             EEecccc
Confidence            9999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=98.81  E-value=1.1e-08  Score=72.86  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhC------CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLIN------CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l~------~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+.+|++++      +++ ++|++|+|++++++.+++++.    ++||+|++....|+++...+   +..|++++.
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~  135 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV----DPGDEVIIMVPFYDCYEPMV---RMAGAVPVF  135 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHH---HHcCCEEEE
Confidence            5688899998886      677 899999999999999999886    79999999888888776544   457999999


Q ss_pred             ecCC
Q psy17798        100 SNPG  103 (110)
Q Consensus       100 v~~~  103 (110)
                      +|++
T Consensus       136 ~~~~  139 (410)
T 3e2y_A          136 IPLR  139 (410)
T ss_dssp             EECE
T ss_pred             Eecc
Confidence            9886

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=98.81  E-value=2.4e-08  Score=72.64  Aligned_cols=78  Identities=10%  Similarity=-0.082  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHh-CCC-----CCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCcE
Q psy17798         26 AVEDARQEIATLI-NCD-----PKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGFN   96 (110)
Q Consensus        26 ~~~~~R~~la~~l-~~~-----~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~~   96 (110)
                      .++++|+++++++ +.+     +++|++  |+|+++|+++++..+.  ...+||+|+++...|+++...+.. ++..|++
T Consensus        95 G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~--~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~  172 (448)
T 3meb_A           95 GFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH--LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVP  172 (448)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHH--HHCTTCCEEEESSCCTHHHHHHHHHHCTTTSC
T ss_pred             chHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHH--HhCCCCEEEECCCCCHhHHHHHHhhHHhCCCe
Confidence            4678999999998 776     789999  9999999998543222  127999999999999988766642 1267999


Q ss_pred             EEEecC-CCC
Q psy17798         97 VLGSNP-GQG  105 (110)
Q Consensus        97 v~~v~~-~~~  105 (110)
                      ++.+|+ +++
T Consensus       173 v~~~~~~~~~  182 (448)
T 3meb_A          173 YKEYTYLRKD  182 (448)
T ss_dssp             CEEECCBCTT
T ss_pred             EEEEeccccc
Confidence            999998 654

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=98.80  E-value=5.3e-09  Score=75.10  Aligned_cols=75  Identities=11%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         27 VEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        27 ~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ++++|+.+|++++      +++++|+||+|+++++++++.++.+  .++||  +|+++...|+++...+   +..|++++
T Consensus        84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~--~~~gd~~~Vl~~~p~~~~~~~~~---~~~g~~~~  158 (437)
T 3g0t_A           84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR--THKNREYGTLFIDPGFNLNKLQC---RILGQKFE  158 (437)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT--SCTTCSCCEEEEESCCHHHHHHH---HHHTCCCE
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc--CCCCCccEEEEeCCCcHhHHHHH---HHcCCEEE
Confidence            4688999999987      6789999999999999999988741  15889  9999888888876655   34689999


Q ss_pred             EecCCCCc
Q psy17798         99 GSNPGQGG  106 (110)
Q Consensus        99 ~v~~~~~G  106 (110)
                      .+|++++|
T Consensus       159 ~v~~~~~~  166 (437)
T 3g0t_A          159 SFDLFEYR  166 (437)
T ss_dssp             EEEGGGGC
T ss_pred             EEeecCCC
Confidence            99987554

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=98.80  E-value=4e-10  Score=80.43  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-----EEEEc-CCCChhHHHHHHHH-
Q psy17798         24 EKAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKK-----HVITT-QTEHKCVLDSCRIL-   90 (110)
Q Consensus        24 ~~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-----~vl~~-~~e~ps~~~~~~~l-   90 (110)
                      .....++|+++|+++      ++++++|+||+|+|+|++++++++.    ++||     +|+++ ..+|+.+...+... 
T Consensus        74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~  149 (417)
T 3g7q_A           74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDD  149 (417)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----C
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchh
Confidence            345789999999998      5789999999999999999999986    6776     89987 77888876554332 


Q ss_pred             --HhCCcEEEEecC
Q psy17798         91 --EGEGFNVLGSNP  102 (110)
Q Consensus        91 --~~~g~~v~~v~~  102 (110)
                        ...+..+..++.
T Consensus       150 ~~~~~~~~~~~~~~  163 (417)
T 3g7q_A          150 LFVSARPNIELLPE  163 (417)
T ss_dssp             CEEECCCEEEEEGG
T ss_pred             hhccccCcccccCC
Confidence              123445555554

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=98.80  E-value=2.1e-08  Score=71.67  Aligned_cols=81  Identities=14%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..++...+...++|+.+|++++++  ++++++|+++|++.++.++.    ++||+|+++..+|+++...+..+ +..|+
T Consensus        51 ~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~  124 (389)
T 3acz_A           51 HIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFGI  124 (389)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            4444444567889999999999986  56667777899999998875    79999999999999988887664 67899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.+|.+
T Consensus       125 ~~~~v~~~  132 (389)
T 3acz_A          125 EVDLIDTS  132 (389)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            99999864

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=98.80  E-value=2e-08  Score=69.72  Aligned_cols=69  Identities=16%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798         29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG  103 (110)
Q Consensus        29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~  103 (110)
                      ++|+.+|++++++ +.|++++| ++|+++++.++.    ++||+|+++..+|+++...+..+ +..|++++.+|..
T Consensus         2 ~l~~~la~~~g~~-~~i~~~sG-~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   71 (331)
T 1pff_A            2 ALEGKIAKLEHAE-ACAATASG-MGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA   71 (331)
T ss_dssp             HHHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred             hHHHHHHHHhCCC-eEEEeCCh-HHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC
Confidence            6899999999986 56666666 899999999875    79999999999999998887653 5679999999863

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=98.79  E-value=2.7e-08  Score=71.43  Aligned_cols=72  Identities=18%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         27 VEDARQEIATLI----N--CDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ..++|+++++++    |  ++++ +|+||+|+++|+.++++++.    ++||+|++....|+++...+   +..|++++.
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~  151 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----DEGDEVIIIEPFFDCYEPMV---KAAGGIPRF  151 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHH---HHcCCEEEE
Confidence            567888888886    6  5788 99999999999999999886    78999999998898876554   457999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       152 ~~~~~~  157 (429)
T 1yiz_A          152 IPLKPN  157 (429)
T ss_dssp             EECBCC
T ss_pred             EeCCcc
Confidence            998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.6e-08  Score=73.42  Aligned_cols=73  Identities=16%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      ...++|+++|+++    +  +++++|++|+|+++|+..+++++.    ++||+|++....|+++...+   +..|++++.
T Consensus        96 g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~  168 (447)
T 3b46_A           96 GRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL----NAGDEVIVFEPFFDQYIPNI---ELCGGKVVY  168 (447)
T ss_dssp             CCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc----CCCCEEEEeCCCchhHHHHH---HHcCCEEEE
Confidence            3568899999987    3  467899999999999999999886    79999999999999877654   457999999


Q ss_pred             ecCCCC
Q psy17798        100 SNPGQG  105 (110)
Q Consensus       100 v~~~~~  105 (110)
                      +|++++
T Consensus       169 v~~~~~  174 (447)
T 3b46_A          169 VPINPP  174 (447)
T ss_dssp             EEEECC
T ss_pred             EeCCCc
Confidence            998654

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=98.78  E-value=2.8e-08  Score=71.99  Aligned_cols=87  Identities=6%  Similarity=0.061  Sum_probs=70.5

Q ss_pred             CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      .++.. .|..++...+..+++++.+|++.+.  +++++++|+++|+..++.++.    ++||+|+++...|+++...+..
T Consensus        67 ~~~~~-~~~y~r~~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~  139 (414)
T 3ndn_A           67 AGELD-HYVYSRYGNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSE  139 (414)
T ss_dssp             TTSSC-CCCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHT
T ss_pred             hCCcC-CcCcCCCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHH
Confidence            34443 3444555556788999999999986  578999999999999998886    8999999999999998877765


Q ss_pred             H-HhCCcEEEEecCC
Q psy17798         90 L-EGEGFNVLGSNPG  103 (110)
Q Consensus        90 l-~~~g~~v~~v~~~  103 (110)
                      . +..|++++++|.+
T Consensus       140 ~~~~~g~~~~~v~~~  154 (414)
T 3ndn_A          140 ILPRWGVQTVFVDGD  154 (414)
T ss_dssp             HHHHTTCEEEEECTT
T ss_pred             HHHHcCcEEEEeCCC
Confidence            3 6689999999875

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.78  E-value=8.6e-09  Score=74.78  Aligned_cols=70  Identities=11%  Similarity=0.022  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHh--------HHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         27 VEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGV--------ARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        27 ~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l--------~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      ..++|+++|++++      +++++|++|+|+++++++++.++        .    ++||+|+++...|+++...++   .
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~---~  174 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTK---Y  174 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHH---H
Confidence            6789999999986      68899999999999999999998        5    799999999999988776654   3


Q ss_pred             CCcEEEEecCC
Q psy17798         93 EGFNVLGSNPG  103 (110)
Q Consensus        93 ~g~~v~~v~~~  103 (110)
                      .|++++...+|
T Consensus       175 ~g~~~~~~~~d  185 (427)
T 2hox_A          175 FDKKGYVWAGN  185 (427)
T ss_dssp             SCBTTEEEEEE
T ss_pred             cCCeeeeecCC
Confidence            46655544443

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.78  E-value=2.2e-08  Score=70.93  Aligned_cols=72  Identities=18%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhCC------CCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLINC------DPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~~------~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ...++|+.++++++.      +++  +|++|+|++++++++++.+..  +++||+|++....|+++...+   +..|+++
T Consensus        71 g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~---~~~g~~~  145 (397)
T 3fsl_A           71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR--YFPESGVWVSDPTWENHVAIF---AGAGFEV  145 (397)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH--HCTTCCEEEESSCCHHHHHHH---HHTTCCE
T ss_pred             chHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHH---HHcCCce
Confidence            457899999999854      678  999999999999999654321  279999999888887765444   5579999


Q ss_pred             EEecC
Q psy17798         98 LGSNP  102 (110)
Q Consensus        98 ~~v~~  102 (110)
                      +.+|+
T Consensus       146 ~~~~~  150 (397)
T 3fsl_A          146 STYPW  150 (397)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            99998

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.77  E-value=2.6e-08  Score=71.07  Aligned_cols=73  Identities=18%  Similarity=0.145  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHH--hC-CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE-EEEec
Q psy17798         26 AVEDARQEIATL--IN-CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN-VLGSN  101 (110)
Q Consensus        26 ~~~~~R~~la~~--l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~-v~~v~  101 (110)
                      ...++|+++|++  .+ +++++|++|+|+++++++++. +.    ++||+|++....|+++...+   +..|++ ++.+|
T Consensus        76 g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~-~~----~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~~~~  147 (400)
T 3asa_A           76 GLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLS-FF----GPNQTVAIQDPSYPAYLDIA---RLTGAKEIIALP  147 (400)
T ss_dssp             CCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHH-HH----CSSCEEEEEESCCHHHHHHH---HHTTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHH-Hc----CCCCEEEECCCCcHHHHHHH---HHcCCcceEecc
Confidence            567899999999  47 788999999999999998754 33    68999999888888766543   456888 99999


Q ss_pred             CCCCc
Q psy17798        102 PGQGG  106 (110)
Q Consensus       102 ~~~~G  106 (110)
                      +++++
T Consensus       148 ~~~~~  152 (400)
T 3asa_A          148 CLQEN  152 (400)
T ss_dssp             CCGGG
T ss_pred             cchhc
Confidence            87643

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=98.77  E-value=1.8e-08  Score=72.57  Aligned_cols=77  Identities=10%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVL   98 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~   98 (110)
                      ++...+...++|+.+|++++++ +.|++++| ++|++.++. +.    ++||+|+++..+|+++...+..+ +..|++++
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~-~~i~~~sG-~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~  134 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAK-YCLAFASG-LAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKIS  134 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEE
T ss_pred             cCCCCchHHHHHHHHHHHhCCC-cEEEECCH-HHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEE
Confidence            3334467789999999999986 67777776 589999988 65    79999999999999988777655 67899999


Q ss_pred             EecCC
Q psy17798         99 GSNPG  103 (110)
Q Consensus        99 ~v~~~  103 (110)
                      .+|++
T Consensus       135 ~v~~~  139 (403)
T 3cog_A          135 FVDCS  139 (403)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99875

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=98.76  E-value=7.8e-09  Score=76.44  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHh-----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCC----EEEEcCCCChhHHHHHHHHH
Q psy17798         23 SEKAVEDARQEIATLI-----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKK----HVITTQTEHKCVLDSCRILE   91 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l-----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~----~vl~~~~e~ps~~~~~~~l~   91 (110)
                      ...++.++|+++|+++     |  +++++|++|+|++++++++++++.    ++||    .|+++...||++...+   +
T Consensus       127 ~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~gd~~~d~Vlv~~p~y~~~~~~~---~  199 (498)
T 3ihj_A          127 ASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SGGGKSRTGVMIPIPQYPLYSAVI---S  199 (498)
T ss_dssp             -CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CCCGGGSEEEEEEESCCTHHHHHH---H
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CCCCCCCCEEEEeCCCchhHHHHH---H
Confidence            3446678999999887     3  468999999999999999999886    6664    9999999999887655   4


Q ss_pred             hCCcEEEEecCCCC
Q psy17798         92 GEGFNVLGSNPGQG  105 (110)
Q Consensus        92 ~~g~~v~~v~~~~~  105 (110)
                      ..|++++.++++++
T Consensus       200 ~~g~~~v~~~~~~~  213 (498)
T 3ihj_A          200 ELDAIQVNYYLDEE  213 (498)
T ss_dssp             HTTCEEEEEECBGG
T ss_pred             HcCCEEEEeecccc
Confidence            46999999999865

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=98.75  E-value=9.9e-09  Score=74.89  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC--
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP--  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~--  102 (110)
                      ..+.++|+.+|+ +|++ +++++|+|+|+|+..+++++.    ++||+|+++...|+++..++..   .|++++++++  
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~---~G~~~~~v~~~~  127 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDI---SQQEGHFIETHQ  127 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHH---HTCCEEECEEEE
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHH---cCCeEEEEeCee
Confidence            467899999999 9987 789999999999999999986    7999999999999999887754   5889999988  


Q ss_pred             CCC
Q psy17798        103 GQG  105 (110)
Q Consensus       103 ~~~  105 (110)
                      +++
T Consensus       128 ~~~  130 (446)
T 2x3l_A          128 SPL  130 (446)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            654

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.75  E-value=6.7e-08  Score=68.58  Aligned_cols=71  Identities=13%  Similarity=0.052  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhCCC--C-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLINCD--P-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~--~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+++++.++++++.+  + ++|+||+|++++++.++.++.    ++||+|+++...|+++...+   +..|++++.+|+
T Consensus        83 l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~  155 (407)
T 3nra_A           83 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV----ARGDKVAIVQPDYFANRKLV---EFFEGEMVPVQL  155 (407)
T ss_dssp             HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC----CTTCEEEEEESCCTHHHHHH---HHTTCEEEEEEB
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC----CCCCEEEEcCCcccchHHHH---HHcCCEEEEeec
Confidence            3444555566666763  4 799999999999999999886    89999999888888766544   457999999998


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       156 ~  156 (407)
T 3nra_A          156 D  156 (407)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.75  E-value=4.3e-09  Score=74.95  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=53.1

Q ss_pred             CCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ++|++..+..........+.+|+.+++++++++++|++++| ++++..++.++.    ++||+|+++..+|+++...+..
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a~~~~~----~~gd~v~~~~~~~~~~~~~~~~  135 (420)
T 3gbx_A           61 GYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAVYTALL----QPGDTVLGMNLAQGGHLTHGSP  135 (420)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHC----CTTCEEEEEEEC----------
T ss_pred             CCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHHHHHhc----CCCCEEEecchhhcceeccchh
Confidence            56665222222222334556889999999998888878777 789999988876    8999999999999886543333


Q ss_pred             HH--hCCcEEEEecCCCCcccc
Q psy17798         90 LE--GEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        90 l~--~~g~~v~~v~~~~~G~~~  109 (110)
                      +.  ..++....++++++|.+|
T Consensus       136 ~~~~g~~~~~~~~~~~~~~~~d  157 (420)
T 3gbx_A          136 VNFSGKLYNIVPYGIDESGKID  157 (420)
T ss_dssp             --CHHHHSEEEEEEECTTCSCC
T ss_pred             hhhcccceeEEeccCCccCCcC
Confidence            22  234556666777666543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=98.74  E-value=4.9e-08  Score=69.84  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhC-C-CCC---cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLIN-C-DPK---EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l~-~-~~~---~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      +..++|+++++++. . .++   +|++|+|+++|+.++++++.    ++||+|+++...|+++....   +..|++++.+
T Consensus        81 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~v  153 (418)
T 3rq1_A           81 GIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT----EPGDEVLTADWYWGAYRVIC---SDTGRTLVTY  153 (418)
T ss_dssp             CCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS----CTTCEEEEESSCCTHHHHHH---HHTTCEEEEE
T ss_pred             ChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc----CCCCEEEECCCCchhHHHHH---HHcCCEEEEE
Confidence            46789999999873 2 356   99999999999999999886    89999999988888876544   5579999999


Q ss_pred             cCCC
Q psy17798        101 NPGQ  104 (110)
Q Consensus       101 ~~~~  104 (110)
                      |+++
T Consensus       154 ~~~~  157 (418)
T 3rq1_A          154 SLFD  157 (418)
T ss_dssp             CSBC
T ss_pred             eeeC
Confidence            9853

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=98.74  E-value=2.7e-08  Score=69.35  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ....++|+.+|++++++  ++++++|+++++.+++.++.    ++||+|+++...|++........+..|++++.+ .++
T Consensus        38 ~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~  110 (347)
T 1jg8_A           38 PTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK  110 (347)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE
T ss_pred             hHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHHHhc----CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCC
Confidence            45778999999999974  78899999999998887765    799999999888876543212234578998888 555


Q ss_pred             Cccc
Q psy17798        105 GGNF  108 (110)
Q Consensus       105 ~G~~  108 (110)
                      +|.+
T Consensus       111 ~~~~  114 (347)
T 1jg8_A          111 NGAM  114 (347)
T ss_dssp             TTEE
T ss_pred             CCcc
Confidence            5544

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.73  E-value=2.1e-08  Score=71.08  Aligned_cols=73  Identities=12%  Similarity=0.029  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHh-CC--CCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         26 AVEDARQEIATLI-NC--DPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        26 ~~~~~R~~la~~l-~~--~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ...++|+++|+++ +.  ++++|+|  |+|+++|++++++++..  +.+||+|+++...|+++....   +..|++++.+
T Consensus        70 g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~~  144 (394)
T 2ay1_A           70 GEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARM--ANPDLRVFVSDPTWPNHVSIM---NFMGLPVQTY  144 (394)
T ss_dssp             CCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHH--HCTTCCEEEEESCCHHHHHHH---HHHTCCEEEE
T ss_pred             CcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHh--cCCCCEEEEcCCCChhHHHHH---HHcCCceEEE
Confidence            4578999999997 55  7899999  99999999999988752  148999999888888766544   4468999999


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      |++
T Consensus       145 ~~~  147 (394)
T 2ay1_A          145 RYF  147 (394)
T ss_dssp             ECE
T ss_pred             ecc
Confidence            985

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.72  E-value=1.3e-07  Score=69.33  Aligned_cols=87  Identities=9%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-----EEEEcCCCChhHHHHHHHHHhC
Q psy17798         19 YGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK-----HVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-----~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      .+....+...++++.+++++|++. .+++|+|+++|+..++.++.....++||     +|+++...|+++..+.   +..
T Consensus       101 ~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~---~~~  176 (474)
T 1wyu_B          101 TAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATA---SMA  176 (474)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHH---HHT
T ss_pred             hChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHH---HHC
Confidence            345566788999999999999875 4778999999999866554311124676     9999999999988764   457


Q ss_pred             CcEEEEecCCCCcccc
Q psy17798         94 GFNVLGSNPGQGGNFL  109 (110)
Q Consensus        94 g~~v~~v~~~~~G~~~  109 (110)
                      |++++.+|++++|.+|
T Consensus       177 G~~vv~v~~~~~~~~d  192 (474)
T 1wyu_B          177 GYQVREIPSGPEGEVD  192 (474)
T ss_dssp             TCEEEEECBCTTSSBC
T ss_pred             CCEEEEecCCCCCCcC
Confidence            9999999998877654

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=98.71  E-value=7e-09  Score=76.98  Aligned_cols=101  Identities=14%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             hhhhhc--CCCCCcCChHHHHHHHHHH-HHHHHHHHHhCCCCCc---EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC
Q psy17798          4 YLTNAY--GNPHSRTHAYGWESEKAVE-DARQEIATLINCDPKE---IIFTSGATESNNIAVKGVARFYKEKKKHVITTQ   77 (110)
Q Consensus         4 ~~~~~~--~n~~~~~~~~~~~~~~~~~-~~R~~la~~l~~~~~~---i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~   77 (110)
                      ++.+.+  +||++ -|..|....+.++ .+|+.+++++|+++++   .++++|+|+|++.++.++.    ++||+|+++.
T Consensus        77 ~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~----~pGD~Vl~~~  151 (490)
T 2a7v_A           77 CLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----QPHDRIMGLD  151 (490)
T ss_dssp             GGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----CSCEECCC--
T ss_pred             HHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----CCCCEecccC
Confidence            444545  78886 4555655444555 7889999999998764   3667788999999999986    8999999999


Q ss_pred             CCChhHHHHHH-----HHHhCC--cEEEEecCC-CCcccc
Q psy17798         78 TEHKCVLDSCR-----ILEGEG--FNVLGSNPG-QGGNFL  109 (110)
Q Consensus        78 ~e~ps~~~~~~-----~l~~~g--~~v~~v~~~-~~G~~~  109 (110)
                      .+|.+......     .+...|  ++++.+++| ++|.+|
T Consensus       152 ~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD  191 (490)
T 2a7v_A          152 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID  191 (490)
T ss_dssp             -----------------------------CCBCTTTCSBC
T ss_pred             ccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence            99876543211     112234  345555666 356665

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=98.71  E-value=3.1e-08  Score=71.17  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhCC------CCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLINC------DPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~~------~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      +..++|+++++++..      +++  +|++|+|+++|++++++.+..  .++||+|+++...|+++...+   +..|+++
T Consensus        93 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~--~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~  167 (420)
T 4f4e_A           93 GIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT--LNPKAKVAISDPSWENHRALF---DMAGFEV  167 (420)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH--HCTTCCEEEEESCCHHHHHHH---HHTTCCE
T ss_pred             CcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH--hCCCCEEEEeCCCcHhHHHHH---HHcCCeE
Confidence            467899999998853      577  899999999999999653321  279999999888888765444   5579999


Q ss_pred             EEecC
Q psy17798         98 LGSNP  102 (110)
Q Consensus        98 ~~v~~  102 (110)
                      +.+|+
T Consensus       168 ~~v~~  172 (420)
T 4f4e_A          168 VAYPY  172 (420)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99998

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.71  E-value=3.6e-08  Score=68.64  Aligned_cols=74  Identities=8%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC--CcEEEEec
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE--GFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~--g~~v~~v~  101 (110)
                      .+..+++++.++++++ .+++|+||+|+++|+.+++.++.    ++||+|+++...|++..... .++..  |++++.+|
T Consensus        42 ~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~----~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~v~  115 (356)
T 1v72_A           42 DELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT----PPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVD  115 (356)
T ss_dssp             SHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC----CTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECC
T ss_pred             chHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc----CCCCEEEEcCccchhhhhch-HHHHHhCCcEEEEec
Confidence            3467889999999999 45569999999999999998875    78999999888887765430 12334  89999998


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      ++
T Consensus       116 ~~  117 (356)
T 1v72_A          116 GP  117 (356)
T ss_dssp             CG
T ss_pred             CC
Confidence            75

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.70  E-value=1.1e-07  Score=69.97  Aligned_cols=90  Identities=11%  Similarity=0.012  Sum_probs=68.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCC---------cEEEeCChHHHHHHHHHHhHHhhc---------------cCCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPK---------EIIFTSGATESNNIAVKGVARFYK---------------EKKK   71 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~---------~i~~t~gat~a~~~i~~~l~~~~~---------------~~g~   71 (110)
                      .+..+........++.+.+++++|.+.+         ..+||+|+|+++..++.+......               .+++
T Consensus       104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~  183 (475)
T 3k40_A          104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL  183 (475)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred             CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence            3444555666777788899999998643         699999999998887776532110               1346


Q ss_pred             EEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         72 HVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        72 ~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .|+++..+|+|+..+...   .|++++.||+|++| +|
T Consensus       184 ~vi~s~~~H~s~~~~~~~---~g~~~~~v~~d~~~-~d  217 (475)
T 3k40_A          184 VGYCSDQAHSSVERAGLL---GGVKLRSVQSENHR-MR  217 (475)
T ss_dssp             EEEEETTSCHHHHHHHHH---HTCEEEEECCBTTB-CC
T ss_pred             EEEECCCchHHHHHHHHH---cCCceEEEECCCCC-cC
Confidence            899999999998877653   58999999999888 65

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=98.68  E-value=4.3e-08  Score=71.14  Aligned_cols=90  Identities=10%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             CCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH
Q psy17798         11 NPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC   87 (110)
Q Consensus        11 n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~   87 (110)
                      ++++ .|..++.   ..+++++.+|+++|++. .+++  ++|+++|+..++.++.    ++||+|+++. ..|+++...+
T Consensus        49 ~~~~-~~~y~~~---~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~all----~~GD~Vl~~~~~~y~~~~~~~  119 (409)
T 3jzl_A           49 HPST-GYGYDDE---GRDTLERVYATVFKTEA-ALVRPQIISGTHAISTVLFGIL----RPDDELLYITGQPYDTLEEIV  119 (409)
T ss_dssp             CCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTSCSHHHHHHHHHHHHC----CTTCEEEECSSSCCTTHHHHH
T ss_pred             CCCc-CCCCChh---HHHHHHHHHHHHhCCCc-EEEECCCccHHHHHHHHHHHhc----CCCCEEEEeCCCCcHhHHHHH
Confidence            4444 4555444   36778889999999853 3444  8889999999998876    8999999987 7888877555


Q ss_pred             -------HHHHhCCcEEEEecCCCCcccc
Q psy17798         88 -------RILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        88 -------~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                             ..++..|++++.+|++++|.+|
T Consensus       120 ~~~g~~~~~l~~~G~~~~~v~~~~~g~~d  148 (409)
T 3jzl_A          120 GIRKQGQGSLKDFHIGYSSVPLLENGDVD  148 (409)
T ss_dssp             TSSSSSSSCTGGGTCEEEECCCCTTSCCC
T ss_pred             hcccchhhHHHHcCCEEEEeCCCCCCCcC
Confidence                   3456679999999998877654

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=98.68  E-value=1.3e-07  Score=69.05  Aligned_cols=81  Identities=21%  Similarity=0.202  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH-HHHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR-ILEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~-~l~~~g~   95 (110)
                      |..++...+..+++++.+|++++++.  .++++++++|+..++.++.    ++||+|+++...|+++...+. .++..|+
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~  147 (430)
T 3ri6_A           74 HVYSRSSNPTVEDLEQRLKNLTGALG--VLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFGI  147 (430)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred             ccccCCCCHHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence            45555555778899999999999753  5566677899999998886    899999999999999888776 4477899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      +++.++.+
T Consensus       148 ~~~~v~~~  155 (430)
T 3ri6_A          148 EVRFVDVM  155 (430)
T ss_dssp             EEEEECTT
T ss_pred             EEEEeCCC
Confidence            99999876

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.67  E-value=2.7e-09  Score=75.76  Aligned_cols=75  Identities=19%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH--HHhCCcEEEEec
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI--LEGEGFNVLGSN  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~--l~~~g~~v~~v~  101 (110)
                      .+..+.+|+.++++++++++.|++++| ++|+.+++.++.    ++||+|+++...|+++...+..  +...+++++.++
T Consensus        68 ~~l~~~~r~~la~~~g~~~~~i~~~sG-t~a~~~a~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  142 (405)
T 2vi8_A           68 DIVEELARERAKQLFGAEHANVQPHSG-AQANMAVYFTVL----EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHC----CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEecCc-HHHHHHHHHHhc----CCCCEEEEecccccchhcccchhhhccceeEEEecc
Confidence            344446999999999998666666666 999999999885    7999999999999887532211  111234788888


Q ss_pred             CC
Q psy17798        102 PG  103 (110)
Q Consensus       102 ~~  103 (110)
                      ++
T Consensus       143 ~~  144 (405)
T 2vi8_A          143 VD  144 (405)
T ss_dssp             BC
T ss_pred             cc
Confidence            76

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=98.67  E-value=7.6e-08  Score=69.13  Aligned_cols=72  Identities=11%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLIN--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..+++++.+++.++  +++++|+||+|+++|++.+++++.    ++||+|++....|+++...+   +..|.+++.+|+
T Consensus       100 ~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~----~~gd~Vi~~~~~y~~~~~~~---~~~g~~~~~~~~  172 (421)
T 3l8a_A          100 DLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS----EKGDAVLINSPVYYPFARTI---RLNDHRLVENSL  172 (421)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CTEEEEEEEESCCHHHHHHH---HHTTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCEEEECCCCcHHHHHHH---HHCCCEEEeccc
Confidence            345566667777777  678999999999999999999876    78999999888888876654   456999999998


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       173 ~  173 (421)
T 3l8a_A          173 Q  173 (421)
T ss_dssp             E
T ss_pred             c
Confidence            6

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.67  E-value=6.1e-08  Score=68.66  Aligned_cols=73  Identities=15%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHh---C---CCCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLI---N---CDPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l---~---~~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ...++|+++|+++   +   +++++|+|  |+|+++|++++++++..  ..+||+|++....|+++...+   +..|+++
T Consensus        70 g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~---~~~g~~~  144 (396)
T 2q7w_A           70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAK--NTSVKRVWVSNPSWPNHKSVF---NSAGLEV  144 (396)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH--HSCCCEEEEEESCCTHHHHHH---HHTTCEE
T ss_pred             CCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHH---HHcCCce
Confidence            4678999999998   3   35899998  99999999999987642  268999999888888876544   4579999


Q ss_pred             EEecCC
Q psy17798         98 LGSNPG  103 (110)
Q Consensus        98 ~~v~~~  103 (110)
                      +.+|++
T Consensus       145 ~~~~~~  150 (396)
T 2q7w_A          145 REYAYY  150 (396)
T ss_dssp             EEEECE
T ss_pred             EEEecc
Confidence            999984

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=98.66  E-value=2.3e-07  Score=65.86  Aligned_cols=69  Identities=10%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..+++++.+++++++  ++|++|+|+++|+.++++++.    ++||.|+++...|+++...+   +..|++++.+|.
T Consensus        88 ~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~~~~~~----~~gd~V~~~~p~~~~~~~~~---~~~g~~~~~v~~  156 (398)
T 3a2b_A           88 DIHVELEEKLSAYVGK--EAAILFSTGFQSNLGPLSCLM----GRNDYILLDERDHASIIDGS---RLSFSKVIKYGH  156 (398)
T ss_dssp             HHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHSS----CTTCEEEEETTCCHHHHHHH---HHSSSEEEEECT
T ss_pred             HHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEECCccCHHHHHHH---HHcCCceEEeCC
Confidence            4567888999999886  589999999999999999986    79999999999999987654   446999998886

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=98.64  E-value=2.8e-07  Score=65.68  Aligned_cols=79  Identities=20%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCC-CCcEEE-eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC--CcEE
Q psy17798         22 ESEKAVEDARQEIATLINCD-PKEIIF-TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE--GFNV   97 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~-~~~i~~-t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~--g~~v   97 (110)
                      ...+..+++|+.+|+++|++ +++|+| |+|+|+|+++++.++.    ++| .++++..+|......  .....  |+++
T Consensus        75 ~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~----~~g-v~~v~~~~~~~~~~~--~~~~~~~g~~~  147 (398)
T 2fyf_A           75 PVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI----DKR-SLHLTYGEFSAKFAS--AVSKNPFVGEP  147 (398)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC----SSC-EEEEECSHHHHHHHH--HHHHCTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc----CCC-eEEEeCCHHHHHHHH--HHHHhCCCCce
Confidence            44567899999999999997 479999 9999999999999986    666 233345555432221  22334  7889


Q ss_pred             EEecCCCCccc
Q psy17798         98 LGSNPGQGGNF  108 (110)
Q Consensus        98 ~~v~~~~~G~~  108 (110)
                      +.+|++ +|..
T Consensus       148 ~~v~~~-~g~~  157 (398)
T 2fyf_A          148 IIITSD-PGSA  157 (398)
T ss_dssp             EEEECC-TTCC
T ss_pred             EEEecC-CCCC
Confidence            999987 4543

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.55  E-value=1.3e-07  Score=73.16  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++++.+|+++|++. .+++++|+++++..++.++.    ++||+|+++..+|+|+...+  ++..|+++++++.+.
T Consensus       173 ~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~--~~l~Ga~~v~v~~~~  245 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSA--LAMAGGRPVYLQTNR  245 (730)
T ss_dssp             THHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH--TTTTCCEEEEECEEE
T ss_pred             HHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHH--HHHCCCEEEEEeCCc
Confidence            357899999999999874 58899999999999999987    89999999999999988762  345799999888753

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.55  E-value=1.2e-07  Score=67.73  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ....++|+.++++++      +++++|+|  |+|+++|+++++..+..  +.+||+|+++...|+++...+   +..|++
T Consensus        73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~---~~~g~~  147 (412)
T 1yaa_A           73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK--FFPDKLVYLSKPTWANHMAIF---ENQGLK  147 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH--HCTTCCEEEEESCCTTHHHHH---HTTTCC
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHH--hCCCCEEEEeCCCCccHHHHH---HHcCce
Confidence            357789999999983      36899999  99999999998544331  268999999988888876544   457999


Q ss_pred             EEEecC
Q psy17798         97 VLGSNP  102 (110)
Q Consensus        97 v~~v~~  102 (110)
                      ++.+|+
T Consensus       148 ~~~v~~  153 (412)
T 1yaa_A          148 TATYPY  153 (412)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            999998

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=98.55  E-value=1.2e-06  Score=64.47  Aligned_cols=90  Identities=11%  Similarity=-0.006  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCC----------cEEEeCChHHHHHHHHHHhHHhh---------------ccCCC
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPK----------EIIFTSGATESNNIAVKGVARFY---------------KEKKK   71 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~----------~i~~t~gat~a~~~i~~~l~~~~---------------~~~g~   71 (110)
                      +..+........++.+.+++++|.+.+          ..+||+|+|+|+...+.+.....               ..+++
T Consensus       110 ~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~  189 (481)
T 4e1o_A          110 WASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL  189 (481)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE
T ss_pred             cCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe
Confidence            444555566666777888888887542          68999999999988887664211               02567


Q ss_pred             EEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         72 HVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        72 ~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .|+++..+|+|+..+...   .|++++.||++++|.+|
T Consensus       190 ~v~~s~~~H~s~~~~~~~---~g~~~~~v~~~~~~~~d  224 (481)
T 4e1o_A          190 VAYASDQAHSSVEKAGLI---SLVKMKFLPVDDNFSLR  224 (481)
T ss_dssp             EEEEETTSCHHHHHHHHH---HTCEEEEECCCTTSCCC
T ss_pred             EEEEcCcchHHHHHHHHh---CCCceEEEEcCCCCcCC
Confidence            999999999998877643   58999999998888765

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=98.53  E-value=8.3e-07  Score=62.61  Aligned_cols=70  Identities=9%  Similarity=0.144  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +...++|+.++++++++  +.++++++++++..+++++.    ++||.|+++...|+++...+   +..|++++.+|..
T Consensus        84 ~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~----~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~~  153 (384)
T 1bs0_A           84 VVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKEDRIAADRLSHASLLEAA---SLSPSQLRRFAHN  153 (384)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH---HTSSSEEEEECTT
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCcEEEEcccccHHHHHHH---HHcCCCEEEeCCC
Confidence            56789999999999985  45555555899999998875    79999999999999877665   4468999988853

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=98.50  E-value=2.8e-07  Score=67.28  Aligned_cols=78  Identities=12%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH--------HHHHhCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC--------RILEGEG   94 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~--------~~l~~~g   94 (110)
                      ..+++++.+|+++|++.. +++  ++|+++|+..++.++.    ++||+|+++. ..|++....+        ..++..|
T Consensus        75 g~~~Le~~lA~l~g~e~a-lv~p~~~sGt~A~~~al~all----~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G  149 (427)
T 3hvy_A           75 GRDSLDRVYANIFNTESA-FVRPHFVNGTHAIGAALFGNL----RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG  149 (427)
T ss_dssp             HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHTC----CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT
T ss_pred             hHHHHHHHHHHHhCCCce-EEeCCCCcHHHHHHHHHHHhc----CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC
Confidence            367888999999998643 554  7888999999999886    8999999987 7888776444        3446679


Q ss_pred             cEEEEecCCCCcccc
Q psy17798         95 FNVLGSNPGQGGNFL  109 (110)
Q Consensus        95 ~~v~~v~~~~~G~~~  109 (110)
                      ++++.+|+ ++|.+|
T Consensus       150 ~~~~~v~~-~~~~~d  163 (427)
T 3hvy_A          150 VKYKMVDL-KDGKVD  163 (427)
T ss_dssp             CEEEECCC-BTTBCC
T ss_pred             CEEEEecC-CCCCcC
Confidence            99999998 555554

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.48  E-value=6.8e-07  Score=64.63  Aligned_cols=69  Identities=9%  Similarity=0.037  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC-hhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH-KCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~-ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ....++|+++|++++.+  +++||+|+++|+..++.++.    ++||  +++...| +++...+   +..|++++.++++
T Consensus        75 ~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~----~~gd--i~~~~~~~~~~~~~~---~~~G~~~~~v~~~  143 (456)
T 2ez2_A           75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQ--YVAGNMYFTTTRYHQ---EKNGAVFVDIVRD  143 (456)
T ss_dssp             HHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTC--EEEESSCCHHHHHHH---HHTTCEEEECBCG
T ss_pred             hhHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCC--EeccccccchhHHHH---HHcCCEEEEeccc
Confidence            46788999999999864  89999999999999999875    7899  5566777 7765544   4579999999987


Q ss_pred             C
Q psy17798        104 Q  104 (110)
Q Consensus       104 ~  104 (110)
                      +
T Consensus       144 ~  144 (456)
T 2ez2_A          144 E  144 (456)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.47  E-value=3.5e-07  Score=65.18  Aligned_cols=74  Identities=15%  Similarity=0.051  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHh-CC-----CCCcEEE--eCChHHHHHHHHHHhHHhhccCC-----CEEEEcCCCChhHHHHHHHHH
Q psy17798         25 KAVEDARQEIATLI-NC-----DPKEIIF--TSGATESNNIAVKGVARFYKEKK-----KHVITTQTEHKCVLDSCRILE   91 (110)
Q Consensus        25 ~~~~~~R~~la~~l-~~-----~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g-----~~vl~~~~e~ps~~~~~~~l~   91 (110)
                      ....++|+++|+++ +.     ++++|+|  |+|+++|++++++.+..  ..+|     |+|++....|+++...+   +
T Consensus        74 ~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~--~~~g~~~~~d~Vl~~~p~y~~~~~~~---~  148 (412)
T 1ajs_A           74 LGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR--WYNGTNNKDTPVYVSSPTWENHNGVF---T  148 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH--HSSSSSCCCSCEEEEESCCTHHHHHH---H
T ss_pred             CCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHH--hCcCcCCCCCeEEEcCCCcHHHHHHH---H
Confidence            34678999999999 54     6899999  99999999999764331  2688     99999998998876544   4


Q ss_pred             hCCcE-EEEecCC
Q psy17798         92 GEGFN-VLGSNPG  103 (110)
Q Consensus        92 ~~g~~-v~~v~~~  103 (110)
                      ..|++ ++.+|++
T Consensus       149 ~~g~~~~~~~~~~  161 (412)
T 1ajs_A          149 TAGFKDIRSYRYW  161 (412)
T ss_dssp             HTTCSCEEEEECE
T ss_pred             HcCCceeEEEeee
Confidence            57899 9999984

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.46  E-value=8.2e-07  Score=68.90  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++++.+++++|++ +.+++++|++++++.++.++.    ++||+|+++..+|+|+...+.   ..|+++++++++.
T Consensus       205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~---~~G~~~v~v~~~~  276 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLM---LTGAKPVYMVPSR  276 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHH---HHCCEEEEECCCB
T ss_pred             cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHH---HcCCEEEEEeCCC
Confidence            35678899999999986 468889999999999999987    899999999999999988753   3599999998864


Q ss_pred             C
Q psy17798        105 G  105 (110)
Q Consensus       105 ~  105 (110)
                      +
T Consensus       277 ~  277 (755)
T 2vyc_A          277 N  277 (755)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=98.43  E-value=1.5e-07  Score=70.16  Aligned_cols=74  Identities=12%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHh-----C---CC-CCcEEEeCChHHHHHHHHHHhHHh-hccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         27 VEDARQEIATLI-----N---CD-PKEIIFTSGATESNNIAVKGVARF-YKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        27 ~~~~R~~la~~l-----~---~~-~~~i~~t~gat~a~~~i~~~l~~~-~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..++|+.+|+++     +   ++ +++|++|+|+|+++++++.++... .+++||+|+++...|+++....   +..|++
T Consensus       140 ~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~---~~~g~~  216 (533)
T 3f6t_A          140 LVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP---ELKDYE  216 (533)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG---GGGGSE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHH---HHcCCe
Confidence            456777888776     2   22 479999999999999999984110 1279999999999998876443   446889


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      ++.+|++
T Consensus       217 ~~~v~~~  223 (533)
T 3f6t_A          217 LVEVDLH  223 (533)
T ss_dssp             EEEECCC
T ss_pred             EEEEEec
Confidence            9999886

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=98.43  E-value=1.5e-06  Score=63.86  Aligned_cols=72  Identities=8%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~  103 (110)
                      ...+++++.+++++|++  ++++++|+++|++.++. +.    ++||+|+++...|+++...+..+ +..|++++.+|++
T Consensus       133 ~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~  205 (464)
T 1ibj_A          133 PTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT  205 (464)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence            36778999999999874  77888888999988775 43    79999999999999998877655 6679999999875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.42  E-value=2.2e-08  Score=71.05  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc--EEEEecCC
Q psy17798         29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF--NVLGSNPG  103 (110)
Q Consensus        29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~--~v~~v~~~  103 (110)
                      .+|+.+++++++++++|++++|+ +|+..++.++.    ++||+|+++...|+++...+..++..|.  ..+.++++
T Consensus        73 ~ar~~la~~~g~~~~~i~~~sGt-~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  144 (407)
T 2dkj_A           73 LAIERAKALFGAAWANVQPHSGS-QANMAVYMALM----EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVR  144 (407)
T ss_dssp             HHHHHHHHHHTCSEEECCCSSHH-HHHHHHHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCC
T ss_pred             HHHHHHHHHhCCCcceEEecchH-HHHHHHHHHhc----CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCC
Confidence            48899999999987777777765 59999999875    7999999999999887432222222344  44445444

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=98.41  E-value=1.3e-06  Score=62.01  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      .+...++|+.+|++++++ ++|++ +++++++..+++++.    ++||.|+++...|+++...   ++..|++++.+|.
T Consensus        89 ~~~~~~l~~~la~~~g~~-~~i~~-~sGs~a~~~~~~~~~----~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~  158 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGME-DAILY-SSCFDANGGLFETLL----GAEDAIISDALNHASIIDG---VRLCKAKRYRYAN  158 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCS-EEEEE-SCHHHHHHTTHHHHC----CTTCEEEEETTCCHHHHHH---HHTSCSEEEEECT
T ss_pred             cHHHHHHHHHHHHHhCCC-cEEEe-CChHHHHHHHHHHHc----CCCCEEEEcchhHHHHHHH---HHHcCCceEEECC
Confidence            457889999999999987 55555 555779988888875    7999999999999887654   3567999988874

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=98.40  E-value=1.3e-06  Score=62.06  Aligned_cols=67  Identities=12%  Similarity=-0.028  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         28 EDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        28 ~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      .++++.+++++|+ +++++++|+|+++|++.++.++      +||+|+++..+|++....+..++..|++++.+
T Consensus        61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v  128 (374)
T 2aeu_A           61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------KPKKVIHYLPELPGHPSIERSCKIVNAKYFES  128 (374)
T ss_dssp             HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe
Confidence            4567777888898 4589999999999999998864      78999999998887655555456679998887

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=98.38  E-value=3.8e-07  Score=66.54  Aligned_cols=79  Identities=8%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcC-CCChhHHHHH-------HHHHhCCc
Q psy17798         26 AVEDARQEIATLINCDPK--EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQ-TEHKCVLDSC-------RILEGEGF   95 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~--~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~-~e~ps~~~~~-------~~l~~~g~   95 (110)
                      ..+++++.+++++|++..  +|+|+ |+++|+..++.++.    ++||+|+++. ..|+++...+       ..++..|+
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~----~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~  140 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL----RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI  140 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC----CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred             hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC----CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence            367899999999998643  44566 56899999998886    8999999987 8888876554       33456799


Q ss_pred             EEEEecCCCCcccc
Q psy17798         96 NVLGSNPGQGGNFL  109 (110)
Q Consensus        96 ~v~~v~~~~~G~~~  109 (110)
                      +++.+|++++|.+|
T Consensus       141 ~~~~v~~~~~~~~d  154 (431)
T 3ht4_A          141 GYNAVPLTEGGLVD  154 (431)
T ss_dssp             EEEECCBCTTSSBC
T ss_pred             EEEEeCCCCCCCcC
Confidence            99999998877654

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=97.73  E-value=4.5e-08  Score=69.60  Aligned_cols=70  Identities=13%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      ..++|+.+++++    +  +++++|++|+|+++++.++++++.    ++||+|++....|+++...+   +..|++++.+
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~---~~~g~~~~~~  140 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT----KEGEAVLINSPVYPPFARSV---RLNNRKLVSN  140 (392)
Confidence            677899999876    3  568999999999999999999886    78999998777777765443   4568888888


Q ss_pred             cCC
Q psy17798        101 NPG  103 (110)
Q Consensus       101 ~~~  103 (110)
                      |++
T Consensus       141 ~~~  143 (392)
T 3b1d_A          141 SLK  143 (392)
Confidence            885

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.34  E-value=3.6e-06  Score=60.94  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCE---EEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH---VITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~---vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      ....++|++++++++.  ++|+||+|+|+|+++++.++......+||+   |+++...|+++...+   +..|.+++.++
T Consensus        76 ~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~---~~~g~~~~~~~  150 (467)
T 1ax4_A           76 RNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV---ELNGCKAINIV  150 (467)
T ss_dssp             HHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH---HHTTCEEEECB
T ss_pred             ccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH---hccCCceeccc
Confidence            3567899999999986  699999999999999999886100018998   888733335544433   44688888775


Q ss_pred             C
Q psy17798        102 P  102 (110)
Q Consensus       102 ~  102 (110)
                      .
T Consensus       151 ~  151 (467)
T 1ax4_A          151 T  151 (467)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.34  E-value=3.1e-06  Score=59.69  Aligned_cols=70  Identities=11%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +..+++|+.++++++++ ++|++++| ++++..++.++.    ++||.|+++...|+++...+   +..|++++.+|..
T Consensus        88 ~~~~~l~~~la~~~~~~-~~i~~~sG-t~a~~~~l~~~~----~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~~  157 (399)
T 3tqx_A           88 TIHKELEKDISEFLGTD-DTILYSSC-FDANGGLFETLL----GPEDAIISDELNHASIIDGI---RLCKAQRYRYKNN  157 (399)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHTTHHHHC----CTTCEEEEETTCCHHHHHHH---HSCCSEEEEECTT
T ss_pred             hHHHHHHHHHHHHHCCC-cEEEECch-HHHHHHHHHHhc----CCCCEEEECCcccHHHHHHH---HHcCCceeEeCCC
Confidence            45789999999999975 45655554 789998888775    89999999999999977654   4578999998863

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=98.32  E-value=7e-07  Score=66.86  Aligned_cols=77  Identities=8%  Similarity=0.049  Sum_probs=56.8

Q ss_pred             HHHHHHHHHh-------CC---CCCcEEEeCChHHHHHHHHHHhHH-hhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         29 DARQEIATLI-------NC---DPKEIIFTSGATESNNIAVKGVAR-FYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        29 ~~R~~la~~l-------~~---~~~~i~~t~gat~a~~~i~~~l~~-~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ++|+++++.+       +.   ++++|++|+|+++++.++++++.. .+.++||+|+++...|+.+..... +...|+++
T Consensus       142 ~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~~~~g~~~  220 (546)
T 2zy4_A          142 NISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE-LAQYALEE  220 (546)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH-STTSCCEE
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH-HcCCCcEE
Confidence            5677766543       22   468999999999999999988521 012789999999988988765432 34468999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+|+++++
T Consensus       221 ~~v~~~~~~  229 (546)
T 2zy4_A          221 VAINADPSL  229 (546)
T ss_dssp             EEEECBGGG
T ss_pred             EEEecCccc
Confidence            999987654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.29  E-value=3.4e-06  Score=65.21  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.++++.+|+++|++ ..+++++|++.|+..++.++.    ++||+|+++...|.|+....   +..|+++++++.+.
T Consensus       195 g~i~eaE~~lA~~fGa~-~a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l---~lsGa~pv~v~~~~  266 (715)
T 3n75_A          195 GPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLM---MMSDVTPIYFRPTR  266 (715)
T ss_dssp             THHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHH---HHSCCEEEEECCCB
T ss_pred             HHHHHHHHHHHHHhCCC-CceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHH---HHcCCEEEEEeccc
Confidence            35789999999999985 356777888899999998887    89999999999999988764   45799999998753

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.26  E-value=9.4e-06  Score=58.41  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +...++|+.++++++++  +.++++++++++..++.++.    ++||.|+++...|+++...+.   ..|++++.+|.
T Consensus       109 ~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~----~~gd~vl~~~~~h~~~~~~~~---~~g~~~~~~~~  177 (427)
T 2w8t_A          109 HDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA----GKGEYVILDADSHASIYDGCQ---QGNAEIVRFRH  177 (427)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CTTCEEEEETTCCHHHHHHHH---HSCSEEEEECT
T ss_pred             HHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc----CCCCEEEECCcccHHHHHHHH---HcCCeeEEeCC
Confidence            56788999999999874  55666666779888888865    799999999999999876653   46888888874

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=98.25  E-value=3.7e-06  Score=60.64  Aligned_cols=80  Identities=9%  Similarity=0.030  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH--HHhCC
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI--LEGEG   94 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~--l~~~g   94 (110)
                      |..++...+...++++.+|++.+++  ++++++|+++|+.. +..+.    ++||+|+++...|++....+..  ++..|
T Consensus        59 ~~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  131 (400)
T 3nmy_A           59 FEYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTAG  131 (400)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence            4445555567889999999999875  56666777999987 44554    7999999999999977766554  45679


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      ++++.++.+
T Consensus       132 ~~~~~v~~~  140 (400)
T 3nmy_A          132 LDFSFVDLT  140 (400)
T ss_dssp             CEEEEECTT
T ss_pred             eEEEEECCC
Confidence            999999875

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.25  E-value=1e-05  Score=57.63  Aligned_cols=75  Identities=11%  Similarity=-0.005  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHh-CCC-----CCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         25 KAVEDARQEIATLI-NCD-----PKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        25 ~~~~~~R~~la~~l-~~~-----~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ....++|+++++++ +.+     +++|.+  |.++++++..+...+. .+.++||+|+++...|+++...+   +..|++
T Consensus        79 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~---~~~g~~  154 (409)
T 4eu1_A           79 TGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNHESIF---AKAGME  154 (409)
T ss_dssp             TCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHHHHHH---HHTTCE
T ss_pred             CCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhHHHHH---HHcCCe
Confidence            35678999999987 655     788854  9999999998765432 22378999999888888876544   457999


Q ss_pred             EEEecCC
Q psy17798         97 VLGSNPG  103 (110)
Q Consensus        97 v~~v~~~  103 (110)
                      ++.+|++
T Consensus       155 ~~~~~~~  161 (409)
T 4eu1_A          155 LTPYSYY  161 (409)
T ss_dssp             EEEECCE
T ss_pred             EEEEEee
Confidence            9999984

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=98.23  E-value=3.2e-06  Score=61.09  Aligned_cols=71  Identities=20%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHh-C-----CCCCc--EEEeCChHHHHHHHHHHhHHhhcc--CCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         24 EKAVEDARQEIATLI-N-----CDPKE--IIFTSGATESNNIAVKGVARFYKE--KKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        24 ~~~~~~~R~~la~~l-~-----~~~~~--i~~t~gat~a~~~i~~~l~~~~~~--~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ..++.++|+++++++ +     .++++  |++|.|+++|+.+++..+.    .  + |+|++.+..|+.+...+   +..
T Consensus        71 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~----~~~~-d~Vlv~~P~y~~~~~~~---~~~  142 (405)
T 3k7y_A           71 GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK----MLNV-ETLYVTNPPYINHVNMI---ESR  142 (405)
T ss_dssp             TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH----TTTC-CEEEEESSCCHHHHHHH---HTT
T ss_pred             CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH----hcCC-CEEEEeCCCCHhHHHHH---HHc
Confidence            346789999999987 2     13454  6999999999999999887    5  7 99998777777765444   567


Q ss_pred             CcEEEEecC
Q psy17798         94 GFNVLGSNP  102 (110)
Q Consensus        94 g~~v~~v~~  102 (110)
                      |++++.+|+
T Consensus       143 g~~~~~v~~  151 (405)
T 3k7y_A          143 GFNLKYINF  151 (405)
T ss_dssp             TCEEEEECC
T ss_pred             CCeEEEEec
Confidence            999999998

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.21  E-value=1.3e-06  Score=62.12  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH--HhCCcEEEEecCCC
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL--EGEGFNVLGSNPGQ  104 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l--~~~g~~v~~v~~~~  104 (110)
                      .+.+|+.+++++++++. .++++|+++|+..++.++.    ++||+|+++...|++........  ...+++++.+++++
T Consensus        80 ~~~a~~~~~~~~~~~~~-~v~~~~Gs~a~~~al~~~~----~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  154 (425)
T 3ecd_A           80 EALAIERVKRLFNAGHA-NVQPHSGAQANGAVMLALA----KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR  154 (425)
T ss_dssp             HHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC----CTTCEEEEECC------------------CEEEEECCCT
T ss_pred             HHHHHHHHHHHhCCCCc-eeecCchHHHHHHHHHHcc----CCCCEEEEcccccccceecchhhhhcccceeeeecCCCc
Confidence            44567889999998753 3468888899999998875    89999999999998843333322  22334666777764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.13  E-value=5.8e-06  Score=58.01  Aligned_cols=63  Identities=16%  Similarity=0.096  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc---cCC-CEEEEcCCCChhHHHHHHHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK---EKK-KHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~---~~g-~~vl~~~~e~ps~~~~~~~l   90 (110)
                      ...++|+.+|+++|+ +++|++|+|+++|+.+++.++. .+.   ++| |+|++++..|+++...+..+
T Consensus        71 ~~~~l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~~~-~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~  137 (375)
T 2eh6_A           71 WQEELAHKLVKHFWT-EGKVFFANSGTESVEAAIKLAR-KYWRDKGKNKWKFISFENSFHGRTYGSLSA  137 (375)
T ss_dssp             HHHHHHHHHHHTSSS-CEEEEEESSHHHHHHHHHHHHH-HHHHHTTCCCCEEEEEBTCCCCSSHHHHHH
T ss_pred             HHHHHHHHHHhhcCC-CCeEEEeCchHHHHHHHHHHHH-HHhccCCCCCCEEEEECCCcCCCchhhhhh
Confidence            467899999999998 5899999999999999987631 122   467 99999998888766555443

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.13  E-value=1.2e-05  Score=57.37  Aligned_cols=57  Identities=11%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHH---HhHHhhccCCCEEEEcCCCChhHHH
Q psy17798         24 EKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVK---GVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~---~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      .+...++|+.|+++++. .+++|+||+|+++|+..+++   ++.    +++ +|++.+..|++...
T Consensus        83 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~----~~~-~vi~~~p~y~~~~~  143 (426)
T 1sff_A           83 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT----KRS-GTIAFSGAYHGRTH  143 (426)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH----TCC-EEEEETTCCCCSSH
T ss_pred             CHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh----CCC-eEEEECCCcCCCch
Confidence            35678999999999943 34899999999999999988   443    555 77777666665443

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=98.13  E-value=8.2e-06  Score=58.55  Aligned_cols=58  Identities=7%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhcc----CCCEEEEcCCCChhHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKE----KKKHVITTQTEHKCVL   84 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~----~g~~vl~~~~e~ps~~   84 (110)
                      ...++++.+++++++++++|+||+|+++|++.+++++.. +.+    +|++|++....|+++.
T Consensus        87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~-~~~~~g~~~~~vi~~~~~yh~~~  148 (429)
T 1s0a_A           87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ-YWQAKGEARQRFLTFRNGYHGDT  148 (429)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHH-HHHHHTCCCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHH-HhcccCCCCCeEEEECCCCCCCc
Confidence            346788889999999899999999999999999987531 112    5889998876655543

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.11  E-value=7.5e-06  Score=57.96  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      +...++++.+++++++++++|+||+|+++|+.++++++..  ..++++||+.+..|++..
T Consensus        87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~--~~~~~~vi~~~~~y~~~~  144 (395)
T 1vef_A           87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--HTGRKKFVAAMRGFSGRT  144 (395)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH--HHSCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHH--HhCCCeEEEEcCCcCCCc
Confidence            4678999999999998889999999999999999987631  146788888877776543

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=98.11  E-value=3.2e-06  Score=59.03  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCE--EEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH--VITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~--vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ....++|+.+|++++.+.  .+|++|+++|+.++++++.    .+||+  |+++...|++...........|++++.+|.
T Consensus        48 ~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~  121 (359)
T 3pj0_A           48 AVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT  121 (359)
T ss_dssp             HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC
T ss_pred             HHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC
Confidence            467899999999999854  3666888999999998876    46665  555544444432211111335899999987


Q ss_pred             CCCccc
Q psy17798        103 GQGGNF  108 (110)
Q Consensus       103 ~~~G~~  108 (110)
                      + ++.+
T Consensus       122 ~-~~~~  126 (359)
T 3pj0_A          122 A-NQLL  126 (359)
T ss_dssp             T-TSCC
T ss_pred             c-CCCc
Confidence            4 4443

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=98.11  E-value=1.4e-06  Score=63.19  Aligned_cols=94  Identities=11%  Similarity=0.063  Sum_probs=60.2

Q ss_pred             CCCCCcCChHHHHHHHHHHHHH-HHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVEDAR-QEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~R-~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      ++|++ .|..+....+.++++. +.++++++++... ++++|+++|+..++.++.    ++||+|+++..+|+++.....
T Consensus        76 g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~~~-v~~~sGs~a~~~a~~~~~----~~Gd~Vl~~~~~~~~~~~~~~  149 (447)
T 3h7f_A           76 GLPGR-RYYGGCEHVDVVENLARDRAKALFGAEFAN-VQPHSGAQANAAVLHALM----SPGERLLGLDLANGGHLTHGM  149 (447)
T ss_dssp             EETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHC----CTTCEEEEECGGGTCCGGGTC
T ss_pred             cCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCceE-EEeCCHHHHHHHHHHHhc----CCCCEEEecCcccccccchhh
Confidence            45554 2333444444555555 9999999987633 336677889999988876    899999999988877321111


Q ss_pred             --HHHhCCcEEEEecCCC-Ccccc
Q psy17798         89 --ILEGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        89 --~l~~~g~~v~~v~~~~-~G~~~  109 (110)
                        .+...+..+..+|+++ ++.+|
T Consensus       150 ~~~~~g~~~~~~~~~~~~~~~~~d  173 (447)
T 3h7f_A          150 RLNFSGKLYENGFYGVDPATHLID  173 (447)
T ss_dssp             TTSHHHHSSEEEEECCCTTTCSCC
T ss_pred             hhhhcCCeeEEEEcCcCcccCCcC
Confidence              1122356777788774 44443

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=98.08  E-value=1.5e-05  Score=57.15  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH------HhCC----
Q psy17798         26 AVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL------EGEG----   94 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l------~~~g----   94 (110)
                      ...++++.++++++++ +++|+||+|+++|++.+++++..   .+|++||+.+..|++.......+      .+.+    
T Consensus        87 ~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~---~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~  163 (419)
T 2eo5_A           87 PQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN---TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPF  163 (419)
T ss_dssp             HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT---TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCC
T ss_pred             HHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH---hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCC
Confidence            3467888999999988 89999999999999999987641   13888988776555433333222      1112    


Q ss_pred             -cEEEEecCCC
Q psy17798         95 -FNVLGSNPGQ  104 (110)
Q Consensus        95 -~~v~~v~~~~  104 (110)
                       .+++.+|.+.
T Consensus       164 ~~~~~~v~~~~  174 (419)
T 2eo5_A          164 MPGVIHVPYPN  174 (419)
T ss_dssp             CTTEEEECCCC
T ss_pred             CCCCEEECCCc
Confidence             3577888754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=98.07  E-value=7.7e-06  Score=57.09  Aligned_cols=77  Identities=13%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC--EEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK--HVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~--~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ....++|+.+|++++++  ..++++|+++++.++++++.    .+||  .|+++...|++...........|++++.+|.
T Consensus        47 ~~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~  120 (357)
T 3lws_A           47 AIIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA  120 (357)
T ss_dssp             TTHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence            45778999999999973  34566888899999888876    4666  7887777777654322222345899999885


Q ss_pred             CCCccc
Q psy17798        103 GQGGNF  108 (110)
Q Consensus       103 ~~~G~~  108 (110)
                      + ++.+
T Consensus       121 ~-~~~~  125 (357)
T 3lws_A          121 A-DRLM  125 (357)
T ss_dssp             T-TSCC
T ss_pred             C-CCCc
Confidence            3 3433

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.93  E-value=7.1e-05  Score=53.25  Aligned_cols=69  Identities=9%  Similarity=0.045  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..+++++.++++++++. .| +++++++++..++.++.    ++||.|+++...|+++...+.   ..|++++.++.
T Consensus       104 ~~~~~l~~~la~~~g~~~-~i-~~~sGt~a~~~~l~~~~----~~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~  172 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDE-CL-LSQSGWNANVGLLQTIC----QPNTNVYIDFFAHMSLWEGAR---YANAQAHPFMH  172 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSE-EE-EESCHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHH---HTTCEEEEECT
T ss_pred             HHHHHHHHHHHHHhCCCe-EE-EecchHHHHHHHHHHhc----CCCCEEEECCCcCHHHHHHHH---HcCCeEEEecC
Confidence            345678999999998753 34 45555799998888876    899999999999999876653   45888887764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=97.84  E-value=2.6e-05  Score=56.33  Aligned_cols=58  Identities=22%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc-----cCCCEEEEcCCCChhHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK-----EKKKHVITTQTEHKCVL   84 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~-----~~g~~vl~~~~e~ps~~   84 (110)
                      ...++++.+++++++++++|+||+|+++|+..+++++.. +.     .++++||+.+..|++..
T Consensus        94 ~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~-~~~~~g~~~~~~vi~~~~~yhg~~  156 (449)
T 3a8u_X           94 LSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRA-YWRLKGQATKTKMIGRARGYHGVN  156 (449)
T ss_dssp             HHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHH-HHHHTTCTTCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHH-HHHhcCCCCCCEEEEECCCcCCCC
Confidence            456889999999988889999999999999999987652 11     16788988766666543

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=97.80  E-value=5.2e-05  Score=54.37  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDS   86 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~   86 (110)
                      +...++++.+++++++++++|+||+|+++|+..+++.+.....    .+++.||+.+..|+.+...
T Consensus        72 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~  137 (430)
T 3i4j_A           72 DVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLG  137 (430)
T ss_dssp             HHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcc
Confidence            3456788889999998889999999999999999987752100    2367898887777765543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=97.78  E-value=7.8e-05  Score=52.78  Aligned_cols=56  Identities=14%  Similarity=0.242  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc--cC-CCEEEEcCCCChh
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK--EK-KKHVITTQTEHKC   82 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~--~~-g~~vl~~~~e~ps   82 (110)
                      +...++++.++++++  +++|+||+|+++|+..+++++.....  ++ +++|++.+..|++
T Consensus        82 ~~~~~l~~~la~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~  140 (397)
T 2ord_A           82 RPQMELAELLSKNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHG  140 (397)
T ss_dssp             HHHHHHHHHHHHTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCC
T ss_pred             HHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCC
Confidence            456788999999987  58999999999999999987641000  04 4677776655544

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=97.70  E-value=0.00011  Score=51.95  Aligned_cols=63  Identities=11%  Similarity=0.108  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh---ccCC-CEEEEcCCCChhHHHHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY---KEKK-KHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~---~~~g-~~vl~~~~e~ps~~~~~~~   89 (110)
                      +...++++.++++++.  ++|+||+|+++|+..+++++....   ..+| ++|++.+..|+++......
T Consensus        81 ~~~~~l~~~la~~~~~--~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~  147 (406)
T 4adb_A           81 EPVLRLAKKLIDATFA--DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVS  147 (406)
T ss_dssp             HHHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHH
T ss_pred             HHHHHHHHHHHhhCCC--CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhh
Confidence            3567899999999875  499999999999999998775100   0045 8888887777776544433

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.66  E-value=7e-05  Score=52.88  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh------ccCCCEEEEcCCCChhHHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY------KEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~------~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      +...++++.++++++  +++++||+|+++|++.+++.+....      ...+++|++....|++.....
T Consensus        78 ~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~  144 (392)
T 3ruy_A           78 DQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGA  144 (392)
T ss_dssp             TTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHH
T ss_pred             HHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhh
Confidence            356788999999998  7899999999999999998765210      013679999888887655443

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=97.66  E-value=0.0002  Score=51.38  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc---cCC-CEEEEcCCCChhHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK---EKK-KHVITTQTEHKCVLD   85 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~---~~g-~~vl~~~~e~ps~~~   85 (110)
                      +...++++.++++++  +++|+||+|+++|+..+++++.....   .+| ++||+.+..|++...
T Consensus        99 ~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~  161 (420)
T 2pb2_A           99 EPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL  161 (420)
T ss_dssp             HHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSH
T ss_pred             HHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCH
Confidence            456788999999887  57999999999999999988751000   056 588887776765443

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.62  E-value=0.00018  Score=51.99  Aligned_cols=66  Identities=12%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC-----C----CEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK-----K----KHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~-----g----~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ....++|+.+|++++.  ++++||+|+|+|+++++.++.    ++     |    |+|+++ ..|........  ...|.
T Consensus        74 ~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~~~~----~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~--~~~~~  144 (467)
T 2oqx_A           74 RSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFS-NYFFDTTQGHS--QINGC  144 (467)
T ss_dssp             HHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHHHHH----HHHHHHHCCCTTTCEEEE-SSCCHHHHHHH--HHTTC
T ss_pred             chhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHHHHh----ccccccCCCCccceEEec-ccccccchhhh--hccCc
Confidence            3567899999999986  689999999999999999886    45     6    888876 45633222222  22455


Q ss_pred             EEEE
Q psy17798         96 NVLG   99 (110)
Q Consensus        96 ~v~~   99 (110)
                      .+..
T Consensus       145 ~~~~  148 (467)
T 2oqx_A          145 TVRN  148 (467)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            5543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=97.54  E-value=0.00031  Score=50.30  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ...++++.+++++++++++|+||+|+++|+..+++.+.. + ..+++|++.+..|++
T Consensus        86 ~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~-~-~~~~~vi~~~~~yhg  140 (433)
T 1zod_A           86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL-V-TGKYEIVGFAQSWHG  140 (433)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH-H-HTCCEEEEETTCCCC
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH-h-hCCCeEEEECCCcCC
Confidence            456788889999998889999999999999999986531 1 345788877655544

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=97.46  E-value=0.00057  Score=49.33  Aligned_cols=58  Identities=10%  Similarity=0.222  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-h----ccCC-CEEEEcCCCChhHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-Y----KEKK-KHVITTQTEHKCVL   84 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~----~~~g-~~vl~~~~e~ps~~   84 (110)
                      +...++++.++++++  +++|+||+|+++|+..+++.+... +    +.+| ++||+.+..|++..
T Consensus       107 ~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~  170 (433)
T 1z7d_A          107 VPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRT  170 (433)
T ss_dssp             HHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----
T ss_pred             HHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcc
Confidence            456678889999986  579999999999999999875310 0    1256 89988877776643

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.38  E-value=0.00052  Score=49.20  Aligned_cols=54  Identities=7%  Similarity=0.084  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ...++++.++++++ ++++|+||+|+++|+..+++.+.. . .++++||+....|++
T Consensus        96 ~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~-~-~~~~~vi~~~~~yhg  149 (434)
T 3l44_A           96 LEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARA-Y-TGRTKIMKFAGCYHG  149 (434)
T ss_dssp             HHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEETTCCCC
T ss_pred             HHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHH-h-hCCCEEEEEcCccCC
Confidence            44578888888887 789999999999999999987642 1 367888886655543

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=97.36  E-value=0.00064  Score=49.32  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHHHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~~~   87 (110)
                      +...++++.++++++.+.++|+||+|+++|+..+++.+.....    .++++||+....|+......
T Consensus        94 ~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~  160 (459)
T 4a6r_A           94 PAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGG  160 (459)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHH
Confidence            3456788889998888889999999999999999988762100    15788888777777655433

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=97.31  E-value=0.00052  Score=49.76  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhHHhhcc-----------CCCEEEEcCCCChhHHH
Q psy17798         26 AVEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGVARFYKE-----------KKKHVITTQTEHKCVLD   85 (110)
Q Consensus        26 ~~~~~R~~la~~l~-~~~~~i~~t~gat~a~~~i~~~l~~~~~~-----------~g~~vl~~~~e~ps~~~   85 (110)
                      ...++++.++++++ .++++|+||+|+++|+..+++.+.. +..           +|++||+.+..|++...
T Consensus       102 ~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~-~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~  172 (449)
T 2cjg_A          102 AMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD-WKSRHNQAHGIDPALGTQVLHLRGAFHGRSG  172 (449)
T ss_dssp             HHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHH-HHHHHHHHTTSCTTCCCEEEEETTCCCCSST
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH-HhcccccccccccCCCCEEEEECCCcCCccc
Confidence            45678889999997 5788999999999999999886431 112           28899998877775433

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=97.29  E-value=0.00054  Score=48.38  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc---cCCCEEEEcCCCChhHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK---EKKKHVITTQTEHKCVL   84 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~---~~g~~vl~~~~e~ps~~   84 (110)
                      +...++++.++++++  +++|+||+|+++|+..+++.+.....   .++++|++.+..|++..
T Consensus        78 ~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~  138 (395)
T 3nx3_A           78 ENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRT  138 (395)
T ss_dssp             HHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCC
Confidence            456788889999887  68999999999999999987652100   24688888777776543

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=97.18  E-value=0.0011  Score=47.52  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ...++++.++++++ ++++|+||+|+++|+..+++.... + .++++||+.+..|++
T Consensus        97 ~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~-~-~~~~~vi~~~~~yhg  150 (434)
T 2epj_A           97 AEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARG-Y-TGRDLILKFDGCYHG  150 (434)
T ss_dssp             HHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEEETCCCC
T ss_pred             HHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHH-h-hCCCeEEEEcCCcCC
Confidence            45678888888886 678999999999999999887310 1 356777776655554

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=97.15  E-value=0.0011  Score=47.92  Aligned_cols=56  Identities=14%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh-h----ccCC-CEEEEcCCCChhH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF-Y----KEKK-KHVITTQTEHKCV   83 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~-~----~~~g-~~vl~~~~e~ps~   83 (110)
                      ...++++.++++++  +++|+|++|+++|+..+++.+... .    +.+| ++||+.+..|++.
T Consensus       119 ~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~  180 (439)
T 2oat_A          119 VLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGR  180 (439)
T ss_dssp             SHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCS
T ss_pred             HHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCC
Confidence            45678888999886  579999999999999999876410 0    0245 7888877666554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=97.11  E-value=0.0011  Score=48.08  Aligned_cols=62  Identities=13%  Similarity=0.066  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh----ccCCCEEEEcCCCChhHHHHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY----KEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      ...++++.++++++.++++|+||+|+++|+..+++.+....    ..+++.||+.+..|+......
T Consensus        96 ~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~  161 (460)
T 3gju_A           96 ASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMT  161 (460)
T ss_dssp             HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHH
T ss_pred             HHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHH
Confidence            45577888888887788899999999999999998875200    014688888777776654433

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=97.09  E-value=0.0012  Score=47.35  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         25 KAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +...++++.++++++... ++|+||+|+++|+..+++.+.. + .+++.||+.+..|++
T Consensus        86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~-~-~~~~~vi~~~~~yhg  142 (439)
T 3dxv_A           86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK-A-TGRSGVIAFAGAYHG  142 (439)
T ss_dssp             HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHH-H-HSCCEEEEETTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHH-H-hCCCEEEEECCCCCC
Confidence            456788889999887766 7999999999999999987531 1 355666665545443

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=97.07  E-value=0.002  Score=46.02  Aligned_cols=54  Identities=9%  Similarity=0.033  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ...++++.++++++ ++++|+||+|+++|+..+++... .+ .+++.||+.+..|++
T Consensus        93 ~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar-~~-~~~~~vi~~~~~yhg  146 (424)
T 2e7u_A           93 LEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLAR-GY-TGRPYIVKFRGNYHG  146 (424)
T ss_dssp             HHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHH-HH-HCCCEEEEETTCCCC
T ss_pred             HHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH-Hh-hCCCEEEEECCCcCC
Confidence            45677888888886 68899999999999999888521 01 345777776655554

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=97.06  E-value=0.0014  Score=46.93  Aligned_cols=52  Identities=8%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      ...++++.++++++ ++++|+||+|+++|+..+++.+.. . .++++|++.+..|
T Consensus        94 ~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~-~-~~~~~vi~~~~~y  145 (429)
T 3k28_A           94 IENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARG-Y-TGRNKILKFIGCY  145 (429)
T ss_dssp             HHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HTCCEEEEEETCC
T ss_pred             HHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHH-h-hCCCEEEEECCCc
Confidence            44578888998887 688999999999999999987642 1 3567777654433

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=97.04  E-value=0.0023  Score=46.15  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         27 VEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        27 ~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      ..++++.++++++ ++++|+||+|+++|+..+++.... + .++++||+.+..|+...
T Consensus        99 ~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~-~-~~~~~vi~~~~~yhg~~  153 (453)
T 2cy8_A           99 EVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARA-F-TGRRMILRFEGHYHGWH  153 (453)
T ss_dssp             HHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHH-H-HCCCEEEEECC------
T ss_pred             HHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHH-h-hCCCEEEEEcCCcCCCc
Confidence            3344455555545 678999999999999999887310 1 24567777766666443

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=97.03  E-value=0.0013  Score=48.00  Aligned_cols=57  Identities=9%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh---ccCC-CEEEEcCCCCh
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY---KEKK-KHVITTQTEHK   81 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~---~~~g-~~vl~~~~e~p   81 (110)
                      +...++++.++++++.+.++|+||+|+++|+..+++.+....   -++| ++||+.+..|+
T Consensus       118 ~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yh  178 (457)
T 3tfu_A          118 EPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYH  178 (457)
T ss_dssp             HHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcC
Confidence            345689999999998888899999999999999988765200   0144 47776544443

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=97.03  E-value=0.0014  Score=47.39  Aligned_cols=59  Identities=12%  Similarity=0.207  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC----CCEEEEcCCCChhHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK----KKHVITTQTEHKCVL   84 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~----g~~vl~~~~e~ps~~   84 (110)
                      ...++++.++++++.+.++|+||+|+++|+..+++.+...+..+    +++||+....|++..
T Consensus        88 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~  150 (448)
T 3dod_A           88 PATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDT  150 (448)
T ss_dssp             HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCcc
Confidence            45678888888887777899999999999999998876311114    489998777666543

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=96.99  E-value=0.016  Score=42.64  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         23 SEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      .....+++-..+.+++|.+. ...++++|+|.+.+.++.+..+....+++.||++...|-|+..+...   .|+..++|+
T Consensus        96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l---~Gl~p~~v~  172 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT---AGFEPVVIE  172 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH---TTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHH---cCCeeEEEE
Confidence            44556677778888889854 45699999986666655555532212478999999999999887754   589888887


Q ss_pred             C
Q psy17798        102 P  102 (110)
Q Consensus       102 ~  102 (110)
                      +
T Consensus       173 ~  173 (450)
T 3bc8_A          173 N  173 (450)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=96.90  E-value=0.0027  Score=45.29  Aligned_cols=53  Identities=9%  Similarity=0.112  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      ...++++.++++++ ++++|+||+|+++|+..+++.... + .++++||+.+..|+
T Consensus        93 ~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~-~-~~~~~vi~~~~~yh  145 (427)
T 3fq8_A           93 LENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRA-Y-TGRDKIIKFEGCYH  145 (427)
T ss_dssp             HHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEEETCCC
T ss_pred             HHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHH-h-hCCCEEEEECCCcC
Confidence            45677888888887 789999999999999999864431 1 34567777554554

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=96.89  E-value=0.0022  Score=46.19  Aligned_cols=59  Identities=12%  Similarity=0.231  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-cc---CCCEEEEcCCCChhHH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-KE---KKKHVITTQTEHKCVL   84 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-~~---~g~~vl~~~~e~ps~~   84 (110)
                      +...++++.++++++.+.+ |+||+|+++|+..+++.+.... ..   ++++|++.+..|+...
T Consensus        91 ~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~  153 (452)
T 3n5m_A           91 EPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNT  153 (452)
T ss_dssp             HHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCC
Confidence            3556788889999887766 9999999999999998875210 02   6789998777766543

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=96.88  E-value=0.0036  Score=44.75  Aligned_cols=56  Identities=13%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      +...++++.++++++ ++++|+||+|+++|+..+++.... + .+++.||+....|++.
T Consensus        93 ~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~-~-~~~~~ii~~~~~yhg~  148 (429)
T 4e77_A           93 EMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARG-Y-TGRDKIIKFEGCYHGH  148 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEETTCCCC-
T ss_pred             HHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHH-h-hCCCEEEEEcCccCCC
Confidence            345678888888887 688999999999999999885431 1 3566777755454443

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=96.86  E-value=0.0012  Score=47.97  Aligned_cols=70  Identities=10%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHh-C--CCCCc--EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         24 EKAVEDARQEIATLI-N--CDPKE--IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l-~--~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..+++++|+++++++ +  ...+.  .+-|.|+|.|+...+..+...+..+||+|++++.-+|++...+   +..|++
T Consensus        86 ~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~---~~aG~~  160 (420)
T 4h51_A           86 ISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV---KAAGWK  160 (420)
T ss_dssp             TTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH---HHTTCC
T ss_pred             cCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHH---HHcCCe
Confidence            346789999999976 3  22333  3458999999888877665444579999999998898877655   446765

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=96.85  E-value=0.0031  Score=45.74  Aligned_cols=62  Identities=11%  Similarity=0.034  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798         26 AVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ...++++.++++++.+ +++|+||+|++||+..+++.+.. . ..+++||+....|+........
T Consensus       108 ~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~-~-~g~~~ii~~~~~yhg~~~~~~~  170 (453)
T 4ffc_A          108 QYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL-A-TGRPAVVAFDNAYHGRTNLTMA  170 (453)
T ss_dssp             HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEETTCCCCSSHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHH-h-cCCCEEEEEcCccCCcchHHHh
Confidence            4557888888888764 58999999999999999976542 1 3567888877777765544433

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=96.71  E-value=0.0037  Score=45.73  Aligned_cols=60  Identities=18%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVLD   85 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~~   85 (110)
                      ...++++.++++++.+.++|+|++|+++|+..+++.+.....    .++++||+.+..|+....
T Consensus       100 ~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~  163 (472)
T 3hmu_A          100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTV  163 (472)
T ss_dssp             HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSH
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccH
Confidence            445778888888877788999999999999999987752100    146788877766665543

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=96.61  E-value=0.006  Score=44.18  Aligned_cols=62  Identities=13%  Similarity=0.038  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH
Q psy17798         26 AVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ...++++.+++++..+ +++|+||+|+++|+..+++.+.. . ..+++|++....|+........
T Consensus       105 ~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~-~-~g~~~ii~~~~~yhG~~~~~~~  167 (451)
T 3oks_A          105 GYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARS-H-THKPAVVAFDHAYHGRTNLTMA  167 (451)
T ss_dssp             HHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHH-H-HCCCEEEEETTCCCCSSHHHHH
T ss_pred             HHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHH-h-cCCCeEEEEcCCcCCccHHHHH
Confidence            4557888888888754 58999999999999999976642 1 3557888877777765544433

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=96.32  E-value=0.0063  Score=44.53  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhc----cCCCEEEEcCCCChhHH
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK----EKKKHVITTQTEHKCVL   84 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~----~~g~~vl~~~~e~ps~~   84 (110)
                      ...++.+.++++++.+.++|+|++|+++|+..+++.+...+.    ..++.||+.+..|+...
T Consensus        98 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~  160 (476)
T 3i5t_A           98 PAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGST  160 (476)
T ss_dssp             HHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCC
Confidence            455677778887777778999999999999999988752110    13567887666665443

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=95.05  E-value=0.1  Score=38.83  Aligned_cols=60  Identities=17%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             CCCC-CcEEEeCChHHHHHHHHHHhHHhhcc-CCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         39 NCDP-KEIIFTSGATESNNIAVKGVARFYKE-KKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        39 ~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~-~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      |.+. ...++++|+|.++..++.+..... + .+++||++...|-|+..++..   .|++.++|++
T Consensus       130 G~~~~~~~flVnGsTgg~lamilaa~r~~-rpg~d~VIvpRn~HKSv~kAliL---~Gl~Pv~V~p  191 (501)
T 3hl2_A          130 GVHTVANCFVVPMATGMSLTLCFLTLRHK-RPKAKYIIWPRIDQKSCFKSMIT---AGFEPVVIEN  191 (501)
T ss_dssp             TCTTCCEEEEESSCHHHHHHHHHHHHHHH-CTTCCEEEEECCCCHHHHHHHHH---TTCEEEEECE
T ss_pred             CCCCCCcEEEECcHHHHHHHHHHHHcCcc-cCCCCEEEEecchHHHHHHHHHH---cCCeEEEEee
Confidence            7654 568999999977777776665311 1 249999999999999887754   5999999976

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=94.62  E-value=0.048  Score=40.47  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCC----cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPK----EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~----~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      +-|+. -|..|-+..+.++. +++...++++++..    +|--. +++.|+..++.++.    +|||+|+.-++.|...+
T Consensus        85 GyPg~-RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~-SGs~AN~avy~All----~PGD~ilg~~l~~GGHl  158 (490)
T 3ou5_A           85 GYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTALL----QPHDRIMGLDLPDGGHL  158 (490)
T ss_dssp             C-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHHC----C-CCCEECBC-------
T ss_pred             CCCCc-cccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcC-CHHHHHHHHHHHHc----CCCCEEEecccCCCCcc
Confidence            44665 35556666666666 66777789999876    45444 55678888888887    89999998887766543


Q ss_pred             HHH-----HHH--HhCCcEEEEecCCC-Ccccc
Q psy17798         85 DSC-----RIL--EGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        85 ~~~-----~~l--~~~g~~v~~v~~~~-~G~~~  109 (110)
                      .--     ...  ...-+++...++|+ +|.||
T Consensus       159 tHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~ID  191 (490)
T 3ou5_A          159 THGYMSDVKRISATSIFFESMPYKLNPKTGLID  191 (490)
T ss_dssp             ---------------------CBCEETTTTEEC
T ss_pred             cccccCCCcccccccccccccccccCCCCCccc
Confidence            321     111  11123555566674 57666

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=94.21  E-value=0.086  Score=38.43  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             HHHHHHHH----HhCCCCCcEEEeCChHHHHHHHHHHhHHhh----c-----------------cCC---CEEEEcCCCC
Q psy17798         29 DARQEIAT----LINCDPKEIIFTSGATESNNIAVKGVARFY----K-----------------EKK---KHVITTQTEH   80 (110)
Q Consensus        29 ~~R~~la~----~l~~~~~~i~~t~gat~a~~~i~~~l~~~~----~-----------------~~g---~~vl~~~~e~   80 (110)
                      ++++.+++    ++..++++|+|++|++||+..+++.+....    .                 ++|   ++||+.+..|
T Consensus       110 ~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~y  189 (472)
T 1ohv_A          110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAF  189 (472)
T ss_dssp             THHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCC
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCc
Confidence            45555554    444467899999999999999998763110    0                 034   7899888777


Q ss_pred             hhHHHHHH
Q psy17798         81 KCVLDSCR   88 (110)
Q Consensus        81 ps~~~~~~   88 (110)
                      ++......
T Consensus       190 Hg~~~~~~  197 (472)
T 1ohv_A          190 HGRTMGCL  197 (472)
T ss_dssp             CCSSHHHH
T ss_pred             ccccHHHH
Confidence            76554443

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.54  E-value=1.5  Score=29.61  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             cEEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         44 EIIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        44 ~i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+++..|++.++-. ++..|.    +.|-+|++.+..........+.+++.|.++..++.|
T Consensus        10 KvalVTGas~GIG~aia~~la----~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~D   66 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLA----AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD   66 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee
Confidence            34444555555443 444444    788999988776655556666676778888888776

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=88.18  E-value=0.087  Score=38.71  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      +...++.+.|+++++ ..+.++|++|+++|+..+++.... + ..+++||+.+..|++
T Consensus       140 ~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~-~-tgr~~ii~~~~~yHG  194 (465)
T 2yky_A          140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATA-I-TGRKTVLAFDGGYHG  194 (465)
Confidence            445567777777775 467899999999999999876431 1 355778876655554

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.63  E-value=3.1  Score=27.99  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             EEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         45 IIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        45 i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +++..|++.++-. ++..|.    +.|-+|++.+..........+.++..|.++..++.|
T Consensus         9 valVTGas~GIG~aiA~~la----~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~D   64 (254)
T 4fn4_A            9 VVIVTGAGSGIGRAIAKKFA----LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKAD   64 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEeCCCCHHHHHHHHHHH----HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            4444444445443 334444    678888877666555555566666677777777766

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=83.29  E-value=3.9  Score=29.90  Aligned_cols=45  Identities=16%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEc
Q psy17798         29 DARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITT   76 (110)
Q Consensus        29 ~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~   76 (110)
                      ++.+.|++.+. ..+.|.|++++|||+..+++.... + ..+++|+..
T Consensus       131 ~lae~l~~~~p-~~~~v~f~~SGsEA~e~AiklAr~-~-tgr~~ii~~  175 (454)
T 4ao9_A          131 RLARLICERFP-QIEQLRFTNSGTEANLMALTAALH-F-TGRRKIVVF  175 (454)
T ss_dssp             HHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HTCCEEEEE
T ss_pred             HHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHh-c-ccCCeEEEE
Confidence            34455555553 357899999999999998876532 2 344555544

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.38  E-value=7.1  Score=25.63  Aligned_cols=56  Identities=9%  Similarity=0.041  Sum_probs=31.5

Q ss_pred             cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         44 EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        44 ~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+++|.++...=..+++.|.    +.|.+|++..............++..|.++..++.|
T Consensus         9 ~vlVTGas~GIG~aia~~l~----~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D   64 (252)
T 3h7a_A            9 TVAVIGAGDYIGAEIAKKFA----AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLD   64 (252)
T ss_dssp             EEEEECCSSHHHHHHHHHHH----HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCchHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECc
Confidence            45555544432233444444    677777776555554455555555567777777665

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=82.13  E-value=6.1  Score=26.35  Aligned_cols=62  Identities=10%  Similarity=0.147  Sum_probs=35.5

Q ss_pred             hCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         38 INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        38 l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +..+...+++|.++...=..+++.|.    +.|.+|++..............++..|.++..+..|
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D   83 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLA----VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFD   83 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence            34444445555554433233445554    678888887655444444555555667777777766

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=81.70  E-value=1.6  Score=25.57  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhCCCCCcEEEe
Q psy17798         28 EDARQEIATLINCDPKEIIFT   48 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t   48 (110)
                      .+.|+.||+.++++++.|++-
T Consensus        33 ~eirekLAk~~~~~~~~Vvv~   53 (101)
T 1xn9_A           33 NDVRNKLAAMLNAPLELLVIQ   53 (101)
T ss_dssp             HHHHHHHHHHTTCCTTTEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEEE
Confidence            489999999999999887643

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=81.34  E-value=1.5  Score=25.66  Aligned_cols=21  Identities=10%  Similarity=0.453  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhCCCCCcEEEe
Q psy17798         28 EDARQEIATLINCDPKEIIFT   48 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t   48 (110)
                      .+.|+.||+++++++|.|++-
T Consensus        33 ~eirekLAk~~~~~~d~Vvv~   53 (102)
T 1ywx_A           33 KDVKMKLVAVLNANKQVLVVD   53 (102)
T ss_dssp             HHHHHHHHHHHTSCSTTEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEEE
Confidence            489999999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-31
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	1e-25
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	2e-22
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	5e-19
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	4e-15
d1elua_	381	c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst	8e-15
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	6e-13
d1qz9a_	404	c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen	5e-10
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	4e-09
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	2e-08
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	4e-08
d1vjoa_	377	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	5e-06
d2ch1a1	388	c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas	6e-06
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	1e-04
d1h0ca_	388	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	3e-04
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	0.004

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (280), Expect = 1e-31
 Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)

Query: 1   MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
           M+ ++T    +GNP SR+H +GW++E+AV+ AR +IA L+  DP+EI+FTSGATES+N+A
Sbjct: 22  MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 81

Query: 59  VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
           +KG A FY++K KH+IT++TEHK VLD+CR LE EGF V    P + G
Sbjct: 82  IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 129

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 96.3 bits (238), Expect = 1e-25
 Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           M+ +    YGNP+S  H  G E+   +E AR+++A ++   P EI FTS ATES N  +K
Sbjct: 21  MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79

Query: 61  GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
            VA  ++++K+ +ITT  EHK VL++ + L  +GF V
Sbjct: 80  TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (216), Expect = 2e-22
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE-IIFTSGATESNNIAV 59
              +  + Y   H   H    ++ + +E+ R+  +  IN    E ++F  G TE  N+  
Sbjct: 42  EAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA 101

Query: 60  KGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97
                       ++I +Q EH   +   ++L    G  +
Sbjct: 102 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL 140

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score = 78.1 bits (191), Expect = 5e-19
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI-IFTSGATESNNIAV 59
           ++ Y  N   N H   H     +  A E  R ++A  IN       ++T  ATE+ N+  
Sbjct: 42  LMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 101

Query: 60  KGVARFYKEKKKHVITTQTEHKCVLDSC 87
                   +    +ITT  EH   L   
Sbjct: 102 YSWGMNNLKAGDEIITTVMEHHSNLVPW 129

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 4e-15
 Identities = 4/73 (5%), Positives = 19/73 (26%)

Query: 8  AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK 67
             +    +  +    ++ +++ R    +      +  +     T   +I          
Sbjct: 23 DVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA 82

Query: 68 EKKKHVITTQTEH 80
            K  ++ +    
Sbjct: 83 PNKNVLVVSTGTF 95

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

 Score = 66.5 bits (160), Expect = 8e-15
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
           +         N    + A     ++ +   RQ +A   N DP  I  T   T   +I + 
Sbjct: 27  ITAMYGYLQENGP-FSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW 85

Query: 61  GVARFYKEKKKHVITTQTEHKCV 83
                   +   ++ T  EH  +
Sbjct: 86  ---GLDWHQGDEILLTDCEHPGI 105

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 61.1 bits (146), Expect = 6e-13
 Identities = 14/70 (20%), Positives = 28/70 (40%)

Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH 72
           + T   G+  +     A + I  L+     ++ F SG T++N IA     R ++     
Sbjct: 23 DNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIAT 82

Query: 73 VITTQTEHKC 82
           +   + H+ 
Sbjct: 83 QLGHISTHET 92

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 52.8 bits (125), Expect = 5e-10
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 1   MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
               +   +GN   R+           E     +ATLI     E++ T   + +    + 
Sbjct: 47  AQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLS 105

Query: 61  GVARFYKEKKKHVITTQTEHKC 82
              R    +        TE   
Sbjct: 106 AALRVQATRSPERRVIVTETSN 127

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.2 bits (118), Expect = 4e-09
 Identities = 7/77 (9%), Positives = 19/77 (24%), Gaps = 5/77 (6%)

Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGATESNNIAVKGVARFYKEKK 70
                    +   VE  RQ++  L         ++     + +    +           
Sbjct: 21 FDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQ---D 77

Query: 71 KHVITTQTEHKCVLDSC 87
          K +I +   +   +   
Sbjct: 78 KVLIVSNGAYGARMVEM 94

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 22  ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81
             E     A +  A + N D  +  F  G + + N  V             V+  +  HK
Sbjct: 63  IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117

Query: 82  CVLDSCRILEGEGFNVL 98
            V +S   + G     L
Sbjct: 118 SVYNSALAMAGGRPVYL 134

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 47.5 bits (111), Expect = 4e-08
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 13  HSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH 72
           HS   A  + +++     +++   +   D  E+      T +N + +  +   +     H
Sbjct: 26  HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMTPPWGNIYCH 84

Query: 73  VITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105
                  H    +            L +  G  
Sbjct: 85  ----PASHINNDECGAPEFFSNGAKLMTVDGPA 113

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

 Score = 41.2 bits (95), Expect = 5e-06
 Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 2/73 (2%)

Query: 11  NPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEK 69
           N     H         +++ +  +  +    +P  I  +   T +    +          
Sbjct: 38  NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 96

Query: 70  KKHVITTQTEHKC 82
              V         
Sbjct: 97  LIGVAGYFGNRLV 109

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 17  HAYGWESEKAVEDARQEIATLINCDPKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVIT 75
             +  E  + +++ +  +  +   + +  +  SG A       +  +      +    + 
Sbjct: 42  SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGD-RVLIAVN 100

Query: 76  TQTEHKCVLDSCR 88
                + V  S R
Sbjct: 101 GIWAERAVEMSER 113

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 46  IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
                AT  +        R  + K K++I  + + K    S      E   +
Sbjct: 116 FVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVI 167

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 4/72 (5%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 17  HAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVIT 75
            +   +  + +++ ++ I  +    +P  ++ +     +   A+        E     + 
Sbjct: 44  GSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAAL----VNVLEPGDSFLV 99

Query: 76  TQTEHKCVLDSC 87
                       
Sbjct: 100 GANGIWGQRAVD 111

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 46  IFTSGATESNNIAVKGVARFYKEKKKH--------VITTQTEHKCVLDSCRILEGEGFNV 97
             T G++E+  +    +   ++++ +          +       C     R  + E   +
Sbjct: 119 TNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREI 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.86
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.84
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.84
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.8
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.7
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.21
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.2
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.19
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.01
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	98.97
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.97
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.96
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	98.93
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.92
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	98.88
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	98.88
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	98.88
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.85
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.84
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	98.81
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	98.76
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.76
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	98.74
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.73
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	98.72
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.71
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.7
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	98.68
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	98.68
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.64
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	98.62
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.53
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.52
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	98.52
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	98.5
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	98.42
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.41
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.38
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.37
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.31
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.24
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	98.23
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	98.11
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.06
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	98.03
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.95
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	97.95
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	97.94
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	97.84
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	97.68
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	97.38
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	97.37
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	97.3
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	97.26
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.22
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	97.2
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.15
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.11
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	97.06
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	96.98
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	96.79
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	96.7
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	96.6
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	96.48
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	96.45
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	96.39
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	96.39
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	96.23
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	96.21
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	95.78
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	95.16
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	94.5
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	94.49
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	94.0
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	93.73
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	93.43
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.43
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.22
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	84.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.63
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.75
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.85
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.53

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.9e-21  Score=137.92  Aligned_cols=108  Identities=19%  Similarity=0.319  Sum_probs=97.5

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~-~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+|+++.++||+++.|..++.+.+.++++|+.+|+++|+ ++++|+||+|+|++++.++.++....+++|++|+++..||
T Consensus        43 ~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~  122 (405)
T d1jf9a_          43 AEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEH  122 (405)
T ss_dssp             HHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCC
T ss_pred             HHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcc
Confidence            467888999999888999999999999999999999997 5689999999999999999886543458999999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|+.+ ++.|++|+++|++++|.+|
T Consensus       123 ~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~  152 (405)
T d1jf9a_         123 HANIVPWQMLCARVGAELRVIPLNPDGTLQ  152 (405)
T ss_dssp             GGGTHHHHHHHHHHTCEEEEECBCTTSCBC
T ss_pred             cchHHHHHHHHHHcCcEEEEECCCCCCcCC
Confidence            9999999999 6779999999999999876

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2e-20  Score=131.59  Aligned_cols=107  Identities=37%  Similarity=0.575  Sum_probs=96.8

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCCh
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK   81 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~p   81 (110)
                      .+++++.++||++ .|..+..+.+.++++|+.+|+++|+++++|+|++|+|++++.++.++....+++|+.|+++..+|+
T Consensus        22 ~~~~~~~~~np~~-~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~  100 (376)
T d1eg5a_          22 IVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHK  100 (376)
T ss_dssp             HHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCH
T ss_pred             HHHHHHcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccch
Confidence            4678889999997 899999999999999999999999999999999999999999998765444578899999999999


Q ss_pred             hHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         82 CVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        82 s~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ++..+++.++..|+++++||++++|.+|
T Consensus       101 ~~~~~~~~~~~~g~~v~~vp~~~~~~id  128 (376)
T d1eg5a_         101 AVLETMKYLSMKGFKVKYVPVDSRGVVK  128 (376)
T ss_dssp             HHHHHHHHHHHTTCEEEECCBCTTSCBC
T ss_pred             hhHHHHHHHHhcCCEEEEEcCCCCCeEC
Confidence            9999998888889999999999998876

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.7e-20  Score=132.65  Aligned_cols=102  Identities=56%  Similarity=0.964  Sum_probs=93.5

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHH
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSC   87 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~   87 (110)
                      .++||++..|..++.+.+.++++|+.+|+++|+++++|+||+|+|++++.++.++....+++||+|++++.+||++..+|
T Consensus        31 ~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~  110 (391)
T d1p3wa_          31 TFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTC  110 (391)
T ss_dssp             CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHH
T ss_pred             ccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHH
Confidence            46899998899999999999999999999999999999999999999999999876444589999999999999999999


Q ss_pred             HHHHhCCcEEEEecCCCCcccc
Q psy17798         88 RILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        88 ~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      ..++..|++++.+|++++|.+|
T Consensus       111 ~~~~~~G~~v~~v~~~~~~~~d  132 (391)
T d1p3wa_         111 RQLEREGFEVTYLAPQRNGIID  132 (391)
T ss_dssp             HHHHHTTCEEEEECCCTTSCCC
T ss_pred             HHHHHcCCEEEEeCCCCCCeEc
Confidence            8888889999999999888765

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.80  E-value=3.7e-19  Score=127.00  Aligned_cols=108  Identities=25%  Similarity=0.322  Sum_probs=94.3

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH   80 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~   80 (110)
                      .+++++.++||+++.|..+....+.++++|+.+|+++|++ ++.|+||+|+++++++++.++....+++|++|++++.||
T Consensus        43 ~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~  122 (408)
T d1t3ia_          43 MHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEH  122 (408)
T ss_dssp             HHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCC
T ss_pred             HHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccc
Confidence            5678888999998889999999999999999999999996 688999999999999999886544458999999999999


Q ss_pred             hhHHHHHHHH-HhCCcEEEEecCCCCcccc
Q psy17798         81 KCVLDSCRIL-EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        81 ps~~~~~~~l-~~~g~~v~~v~~~~~G~~~  109 (110)
                      |++..+|..+ ++.|++++.+|.+.+|.++
T Consensus       123 ~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~  152 (408)
T d1t3ia_         123 HSNLVPWQMVAAKTGAVLKFVQLDEQESFD  152 (408)
T ss_dssp             GGGTHHHHHHHHHHCCEEEEECBCTTSSBC
T ss_pred             hhhhhhhhhhhhccCceEeeeecccccccc
Confidence            9999999887 6679999999998877653

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.70  E-value=2.7e-17  Score=115.48  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             hhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChh
Q psy17798          3 PYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC   82 (110)
Q Consensus         3 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps   82 (110)
                      ++++..+.|++. .+..+....+.++++|+.+|+++|+++++|+||+|+|+++++++.++.+   ++|++|+++..|||+
T Consensus        29 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~---~~g~~i~~~~~~~~s  104 (381)
T d1elua_          29 AMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW---HQGDEILLTDCEHPG  104 (381)
T ss_dssp             HHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC---CTTCEEEEETTCCHH
T ss_pred             HHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhh---cCCceEEEeccccce
Confidence            455556667765 5566677778899999999999999999999999999999999999863   899999999999999


Q ss_pred             HHHHHHHH-HhCCcEEEEecCCCC
Q psy17798         83 VLDSCRIL-EGEGFNVLGSNPGQG  105 (110)
Q Consensus        83 ~~~~~~~l-~~~g~~v~~v~~~~~  105 (110)
                      +..+|..+ ++.|+++..+|.+.+
T Consensus       105 ~~~~~~~~~~~~g~~~~~v~~~~~  128 (381)
T d1elua_         105 IIAIVQAIAARFGITYRFFPVAAT  128 (381)
T ss_dssp             HHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             eeeccccccccccccccccccccc
Confidence            99999988 567999999998754

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.21  E-value=5.2e-11  Score=82.01  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      ..+.+++.+|+++|+  |+++||+|+|+|+..++.++.    ++||+||++..+|+|+..++   +..|++++.+|+++
T Consensus        48 l~~~~~~~~A~~~g~--e~~~~t~g~t~a~~~~~~al~----~~gd~Vi~~~~~h~s~~~~~---~~~g~~v~~v~~~~  117 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGC--DVARVTNGAREAKFAVMHSLA----KKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTD  117 (364)
T ss_dssp             HHHHHHTHHHHHTTS--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH---HHTTCEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCc--CEEEEECcHHHHHHHHHHHHh----CCCcEEEeecccccccchHH---HhccceEEEeeecc
Confidence            567789999999997  689999999999999999987    89999999999999988765   45799999999875

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.20  E-value=1.8e-12  Score=90.98  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             hhhhhhhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHh--hccCCCEEEEcCCC
Q psy17798          2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF--YKEKKKHVITTQTE   79 (110)
Q Consensus         2 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~--~~~~g~~vl~~~~e   79 (110)
                      .+|+.+.++|++. .+..+....+.++++|+.+|+++||++++|+||+|+|++++.++.+....  ...+++.|++++.+
T Consensus        48 ~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  126 (404)
T d1qz9a_          48 QAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETS  126 (404)
T ss_dssp             HHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETT
T ss_pred             HHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccc
Confidence            4567777788864 23333344568899999999999999999999999999999887654321  12578888888888


Q ss_pred             ChhHHHHHHHH
Q psy17798         80 HKCVLDSCRIL   90 (110)
Q Consensus        80 ~ps~~~~~~~l   90 (110)
                      |++....+...
T Consensus       127 ~~~~~~~~~~~  137 (404)
T d1qz9a_         127 NFPTDLYIAEG  137 (404)
T ss_dssp             SCHHHHHHHHH
T ss_pred             cchHHHHHHhh
Confidence            88776665543

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.1e-11  Score=82.64  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCC-EEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCc
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKK-HVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~-~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      .++|+++|+++|++||+|++|+|+++++.++++++.    ++|| .|+++...|+.+...+   +..|++++.+|.+++.
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~----~pgd~~Vl~~~P~y~~~~~~~---~~~g~~v~~~~~~~~~  131 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSA---ETIGVECRTVPTLDNW  131 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHH---HHHTCEEEECCCCTTS
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh----ccccccccccccccccchhhh---hccCceeecccccccc
Confidence            479999999999999999999999999999999987    7888 5777777777666554   4459999999988765


Q ss_pred             ccc
Q psy17798        107 NFL  109 (110)
Q Consensus       107 ~~~  109 (110)
                      .+|
T Consensus       132 ~~d  134 (354)
T d1fg7a_         132 QLD  134 (354)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=1.6e-10  Score=81.69  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhC-------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN-------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~-------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ++++++|++||++++       +++++|++|+|+++++.+++.++.    .+||.|+++...|+.+...+   +..|+++
T Consensus        80 ~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~---~~~g~~~  152 (420)
T d1vp4a_          80 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAF---RQYLANF  152 (420)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HTTTCEE
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh----ccccccccccccccchhHHH---HHHhhhc
Confidence            346889999999872       578999999999999999999887    89999999888887766544   5579999


Q ss_pred             EEecCCCCcc
Q psy17798         98 LGSNPGQGGN  107 (110)
Q Consensus        98 ~~v~~~~~G~  107 (110)
                      +.+|.+++|.
T Consensus       153 ~~~~~~~~~~  162 (420)
T d1vp4a_         153 VVVPLEDDGM  162 (420)
T ss_dssp             EEEEEETTEE
T ss_pred             cccccccccc
Confidence            9999987764

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=6e-10  Score=77.25  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +..++|++||+++++++++|++|+|+++++++++.++.    .++|.|+++...|+.+...+.   ..|.+++.++++
T Consensus        62 G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~----~~~d~v~~~~p~~~~~~~~~~---~~g~~~~~~~~~  132 (368)
T d1v2da_          62 GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGDEVVVLEPFFDVYLPDAF---LAGAKARLVRLD  132 (368)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHH---HTTCEEEEEECE
T ss_pred             CCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc----cccccccccCCcchhhhhHHH---hcCCccceeccc
Confidence            46789999999999999999999999999999999987    899999998888888776554   468888877765

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.97  E-value=4e-10  Score=79.39  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhC------------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHh
Q psy17798         25 KAVEDARQEIATLIN------------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEG   92 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~   92 (110)
                      .+++++|+++|++++            .++++|++|+|+++|+.++++++.    ++||+|++++..|+.+....   +.
T Consensus        72 ~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~---~~  144 (412)
T d1bw0a_          72 VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC----DAGDYALVPQPGFPHYETVC---KA  144 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HH
T ss_pred             cCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhh----ccccceeeeeccchhhhhhh---hc
Confidence            457789999999872            578999999999999999999987    89999999888888776544   45


Q ss_pred             CCcEEEEecCCCCc
Q psy17798         93 EGFNVLGSNPGQGG  106 (110)
Q Consensus        93 ~g~~v~~v~~~~~G  106 (110)
                      .|++++.+|+++++
T Consensus       145 ~G~~~~~v~~~~~~  158 (412)
T d1bw0a_         145 YGIGMHFYNCRPEN  158 (412)
T ss_dssp             TTCEEEEEEEEGGG
T ss_pred             cCcccccccccccc
Confidence            79999999998654

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=98.97  E-value=4.2e-10  Score=79.88  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      ++.++|++||++++        ++|++|++|+|+++++.++++++.    .+||.|+++...|+++...+.  ...|+++
T Consensus        84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~--~~~g~~~  157 (428)
T d1iaya_          84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQL  157 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEE
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC----CCCCEEEEccCCchHHHHHHH--HhcCCeE
Confidence            56799999999873        478999999999999999999987    899999998888888765442  2358999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.++++.++
T Consensus       158 v~v~~~~~~  166 (428)
T d1iaya_         158 IPIHCESSN  166 (428)
T ss_dssp             EEECCCTTT
T ss_pred             EEeeccccc
Confidence            999988643

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=98.96  E-value=2.6e-10  Score=81.07  Aligned_cols=75  Identities=13%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         26 AVEDARQEIATLIN--------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        26 ~~~~~R~~la~~l~--------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      +..++|++||++++        ++|++|++|+|+++++.++++++.    ++||.|+++...|+.+...+..  ..|+++
T Consensus        85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~~~~~~~~--~~g~~~  158 (431)
T d1m7ya_          85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEI  158 (431)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHH--hcCcee
Confidence            56789999999873        478999999999999999999987    8999999988888877654421  358999


Q ss_pred             EEecCCCCc
Q psy17798         98 LGSNPGQGG  106 (110)
Q Consensus        98 ~~v~~~~~G  106 (110)
                      +.+++++++
T Consensus       159 v~v~~~~~~  167 (431)
T d1m7ya_         159 VPIHCTSSN  167 (431)
T ss_dssp             EEEECCGGG
T ss_pred             ccccccchh
Confidence            999988653

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=98.93  E-value=3e-10  Score=80.32  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHh----C--CCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         22 ESEKAVEDARQEIATLI----N--CDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l----~--~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      ....+..++|++||+++    +  ++| ++|++|+|+++|+.++++++.    ++||.|++....||.+....   +..|
T Consensus        63 ~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~----~~gd~vlv~~P~y~~~~~~~---~~~g  135 (418)
T d2r5ea1          63 TRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----DEGDEVIIIEPFFDCYEPMV---KAAG  135 (418)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc----ccccceeccccccchhhHHH---HHcC
Confidence            33446778999999987    3  454 789999999999999999987    89999999988888877655   3468


Q ss_pred             cEEEEecCCCCc
Q psy17798         95 FNVLGSNPGQGG  106 (110)
Q Consensus        95 ~~v~~v~~~~~G  106 (110)
                      .+++.+|+++++
T Consensus       136 ~~~~~v~~~~~~  147 (418)
T d2r5ea1         136 GIPRFIPLKPNK  147 (418)
T ss_dssp             CEEEEEECEESC
T ss_pred             CeEEEEEecccc
Confidence            999999887643

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.92  E-value=1.7e-09  Score=75.70  Aligned_cols=74  Identities=8%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         26 AVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        26 ~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      +..++|+++|++++      +++++|++|+|+++++.+++.++.    ++||+|++.+..|+.+...+   +..|+++..
T Consensus        72 G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~v~~~~P~y~~~~~~~---~~~g~~~~~  144 (403)
T d1wsta1          72 GFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL----NPGDPIVVEAPTYLAAIQAF---KYYDPEFIS  144 (403)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh----hcCCccccCCCcchhhhHHH---hhcccccee
Confidence            36789999999973      689999999999999999999987    89999999887777776555   457999999


Q ss_pred             ecCCCCc
Q psy17798        100 SNPGQGG  106 (110)
Q Consensus       100 v~~~~~G  106 (110)
                      +|.++++
T Consensus       145 v~~~~~~  151 (403)
T d1wsta1         145 IPLDDKG  151 (403)
T ss_dssp             EEEETTE
T ss_pred             EeecccC
Confidence            9988754

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=3.6e-09  Score=73.08  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             HHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         29 DARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        29 ~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ++|+++|+++    +  +++++|++|+|+++++..++.++.    ++||+|++.+..|+.+...+   +..|.+++.++.
T Consensus        39 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~---~~~g~~~~~v~~  111 (361)
T d1d2fa_          39 EFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----ETGEGVVIHTPAYDAFYKAI---EGNQRTVMPVAL  111 (361)
T ss_dssp             HHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----CTTCEEEEEESCCHHHHHHH---HHTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc----ccccccccccccccchhHHH---HhhcceEEeecc
Confidence            5677777765    4  578999999999999999999987    89999999888888876554   446888888887


Q ss_pred             CC
Q psy17798        103 GQ  104 (110)
Q Consensus       103 ~~  104 (110)
                      +.
T Consensus       112 ~~  113 (361)
T d1d2fa_         112 EK  113 (361)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=2.5e-09  Score=74.63  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++++++      ++++++|++|+|+++++..+++++.    ++||.|++....|+.+....   +..|++++
T Consensus        68 ~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~vl~~~P~y~~~~~~~---~~~g~~~~  140 (382)
T d1b5pa_          68 AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVIVLSPYWVSYPEMV---RFAGGVVV  140 (382)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHTTCEEE
T ss_pred             CCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC----CCCCEEEECCCCcHHHHHHH---HHhcCeEE
Confidence            35678999999987      4689999999999999999999987    89999999888887776544   45799999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|++++
T Consensus       141 ~v~~~~~  147 (382)
T d1b5pa_         141 EVETLPE  147 (382)
T ss_dssp             EEECCGG
T ss_pred             EEecccc
Confidence            9998753

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=98.88  E-value=3.7e-09  Score=74.03  Aligned_cols=74  Identities=14%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++      ++++++|++|+|+++++.++++++.    ++||.|++....|+.+....   +..|.+++
T Consensus        67 ~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~---~~~~~~~v  139 (388)
T d1j32a_          67 AGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----EPGDEVIIPAPFWVSYPEMV---KLAEGTPV  139 (388)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHH---HHTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh----CCCCEEEEcCCCcHHHHHHH---HHhcCeEE
Confidence            35678899999876      3688999999999999999999887    89999999888888776544   44688888


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|.+.+
T Consensus       140 ~~~~~~~  146 (388)
T d1j32a_         140 ILPTTVE  146 (388)
T ss_dssp             EECCCGG
T ss_pred             EEecccc
Confidence            8888754

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.85  E-value=1.4e-09  Score=72.03  Aligned_cols=63  Identities=25%  Similarity=0.269  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l   90 (110)
                      .+..+++|+.+|+++|+++++|+||+|+|+|+++++.++.    ++++.++.....|++........
T Consensus        34 ~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   96 (340)
T d1svva_          34 DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL----RPWEAVIATQLGHISTHETGAIE   96 (340)
T ss_dssp             SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC----CTTEEEEEETTSHHHHSSTTHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh----hhccccccccccceeeeeccccc
Confidence            4567899999999999999999999999999999998876    78888888887777765443333

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=5.7e-09  Score=72.39  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             hcCCCCCcCChHHHHHHHHHHHHHHHHHHHhC----CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhH
Q psy17798          8 AYGNPHSRTHAYGWESEKAVEDARQEIATLIN----CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCV   83 (110)
Q Consensus         8 ~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~----~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~   83 (110)
                      .+.++.. .|+ +....+.+.++++.+.+.++    ++++.|+||+|+|++++.++.++.+. .++||+|++...++++.
T Consensus        21 Am~~~~~-~hr-~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~-~~~gd~vlv~~~~~~~~   97 (382)
T d2bkwa1          21 ALDVPSL-GHT-SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS-KAPNKNVLVVSTGTFSD   97 (382)
T ss_dssp             TTSCCCC-CTT-SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT-TCSCCEEEEECSSHHHH
T ss_pred             HhCcccC-CCC-cHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh-cCCCCceEEEEechhhh
Confidence            3445543 233 23444555666666666665    46788999999999999999998632 26899999998888886


Q ss_pred             HHHHHHHHhCCcEEEEecCCCCc
Q psy17798         84 LDSCRILEGEGFNVLGSNPGQGG  106 (110)
Q Consensus        84 ~~~~~~l~~~g~~v~~v~~~~~G  106 (110)
                      ...+. .+..|..+..+...+.|
T Consensus        98 ~~~~~-~~~~~~~~~~~~~~~~~  119 (382)
T d2bkwa1          98 RFADC-LRSYGAQVDVVRPLKIG  119 (382)
T ss_dssp             HHHHH-HHHTTCEEEEECCSSTT
T ss_pred             hhhhh-ccccccccccccccCCC
Confidence            65443 45667777776654444

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=7.9e-09  Score=71.86  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhC-------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         25 KAVEDARQEIATLIN-------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        25 ~~~~~~R~~la~~l~-------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+..++|+++|++++       .++++|++|+|+++++.+++.++.    ++||+|++....|+.+.....   ..|+++
T Consensus        62 ~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd~vlv~~P~y~~~~~~~~---~~g~~~  134 (388)
T d1gdea_          62 IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL----KDGEEVLIPTPAFVSYAPAVI---LAGGKP  134 (388)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC----CTTCEEEEEESCCTTHHHHHH---HHTCEE
T ss_pred             cCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc----CCCCEEEECCCCcHHHHHHHH---HcCCEE
Confidence            356789999999873       356789999999999999999987    899999998888888766553   469999


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+|++++
T Consensus       135 ~~~~~~~~  142 (388)
T d1gdea_         135 VEVPTYEE  142 (388)
T ss_dssp             EEEECCGG
T ss_pred             EEeecccc
Confidence            99998754

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=1.9e-08  Score=68.97  Aligned_cols=72  Identities=11%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhC---CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         26 AVEDARQEIATLIN---CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        26 ~~~~~R~~la~~l~---~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +..++|+++|++++   .++|+|++|+|+++++.++++        .+|+|++.+..|+.+...+   +..|++++.+|+
T Consensus        57 g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~--------~~d~v~i~~P~y~~~~~~~---~~~g~~~v~v~~  125 (334)
T d2f8ja1          57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML--------MFDRSVFFPPTYSCYRIFA---KAVGAKFLEVPL  125 (334)
T ss_dssp             SCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH--------HSSEEEECSSCCHHHHHHH---HHHTCCEEECCC
T ss_pred             CcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh--------hccccccccccccccccch---hccCCccccccc
Confidence            45679999999996   478999999999999987654        4588998877777766554   446999999999


Q ss_pred             CCCccc
Q psy17798        103 GQGGNF  108 (110)
Q Consensus       103 ~~~G~~  108 (110)
                      ++++..
T Consensus       126 ~~~~~~  131 (334)
T d2f8ja1         126 TKDLRI  131 (334)
T ss_dssp             CTTSCC
T ss_pred             cccccc
Confidence            987654

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=1.6e-08  Score=70.29  Aligned_cols=77  Identities=10%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         24 EKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .++..++|+++|+++.      +++++|++|+|+++++..++.++.    .+|+.|++....++.+....   +..|+.+
T Consensus        63 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~----~~gd~V~i~~P~y~~~~~~~---~~~g~~~  135 (389)
T d2gb3a1          63 SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA----NPGDEILVLEPFYANYNAFA---KIAGVKL  135 (389)
T ss_dssp             TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHH---HHHTCEE
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc----cCCCeEEEeCCCCccccccc---cccCccc
Confidence            3467899999999873      578999999999999999999987    89999998877777765544   4568888


Q ss_pred             EEecCCCCcc
Q psy17798         98 LGSNPGQGGN  107 (110)
Q Consensus        98 ~~v~~~~~G~  107 (110)
                      ..++++.++.
T Consensus       136 ~~~~~~~~~~  145 (389)
T d2gb3a1         136 IPVTRRMEEG  145 (389)
T ss_dssp             EEEECCGGGT
T ss_pred             cccccccccc
Confidence            8898876543

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.4e-08  Score=68.43  Aligned_cols=85  Identities=11%  Similarity=0.081  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEE
Q psy17798         19 YGWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV   97 (110)
Q Consensus        19 ~~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v   97 (110)
                      .+....+.++++|+.+++++|++. .+|+||+|+|++++.++.++.    .+++++++...+|.+....+. ....+..+
T Consensus        46 Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  120 (388)
T d1h0ca_          46 MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL----EPGDSFLVGANGIWGQRAVDI-GERIGARV  120 (388)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC----CSSCCEEECBSSHHHHHHHHH-HHHHC--C
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh----ccCCceeeecccceeeeeccc-cccccccc
Confidence            456778899999999999999964 479999999999999999986    789999999999988765543 34456677


Q ss_pred             EEecCCCCccc
Q psy17798         98 LGSNPGQGGNF  108 (110)
Q Consensus        98 ~~v~~~~~G~~  108 (110)
                      ..++.+..+.+
T Consensus       121 ~~~~~~~~~~~  131 (388)
T d1h0ca_         121 HPMTKDPGGHY  131 (388)
T ss_dssp             BCCBCCTTCCC
T ss_pred             cccccCCcccc
Confidence            77766654433

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.73  E-value=7e-08  Score=66.52  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      ...++.+.+|+++|+  +..++++|+|.|+.+++.++.   +++||+|+++...|++...++.   ..|++++++.++++
T Consensus        32 ~v~~~E~~la~~~g~--~~ai~~~sgt~Al~~al~al~---~~~gdeVi~~~~~~~~~~~ai~---~~g~~pv~~d~~~~  103 (376)
T d1mdoa_          32 KNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG---IGEGDEVITPSMTWVSTLNMIV---LLGANPVMVDVDRD  103 (376)
T ss_dssp             HHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCHHHHHHHH---HTTCEEEEECBCTT
T ss_pred             HHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHhC---CCCCCEEEEecccccccccchh---ccccceeeeccccc
Confidence            456788999999997  478999999999999999985   3899999999999999998875   46999999999875

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=98.72  E-value=1.1e-07  Score=65.68  Aligned_cols=91  Identities=10%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             hhcCCCCCcCChHHHHHHHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798          7 NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE-IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus         7 ~~~~n~~~~~~~~~~~~~~~~~~~R~~la~~l~~~~~~-i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      +.+..+..  +..+.+..+.++++|+.|++++++++++ |+|++|+|++++.++.++.    .+++++++...++.+...
T Consensus        34 ~Am~~~~~--~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~----~~~~~vl~~~~g~~~~~~  107 (388)
T d2ch1a1          34 TAMTNTVL--SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL----EEGDRVLIAVNGIWAERA  107 (388)
T ss_dssp             HHTTSCCC--CTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHHH
T ss_pred             HHhCcCCC--CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc----cccccccccccccccccc
Confidence            34455653  3446788899999999999999997555 6677899999999999987    788998887777766443


Q ss_pred             HHHHHHhCCcEEEEecCCC
Q psy17798         86 SCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        86 ~~~~l~~~g~~v~~v~~~~  104 (110)
                      . ...+..+..+..++...
T Consensus       108 ~-~~~~~~~~~~~~~~~~~  125 (388)
T d2ch1a1         108 V-EMSERYGADVRTIEGPP  125 (388)
T ss_dssp             H-HHHHHTTCEEEEEECCT
T ss_pred             h-hhhhhhccccccccccc
Confidence            3 33455677777666654

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.71  E-value=9.2e-09  Score=73.28  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+.++++.+|+++|+  ++.+|++|+|.+.|+ ++.++.    ++||+||++..+|.|+..++..+...+..+..+++|
T Consensus        66 ~~i~eae~~~A~~~ga--~~a~f~~~Gtt~~n~a~i~a~~----~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~  139 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNA--DKTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  139 (462)
T ss_dssp             THHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEECCchHHHHHHHHHHhc----CCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence            3578899999999998  467777666655554 455555    899999999999999988877665556666666777


Q ss_pred             CCcc
Q psy17798        104 QGGN  107 (110)
Q Consensus       104 ~~G~  107 (110)
                      +.|.
T Consensus       140 ~~g~  143 (462)
T d1c4ka2         140 PYGF  143 (462)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            6664

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=5.7e-08  Score=66.52  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +..+....+.++++|+.+++++|+++++  |+||+|+|++++.++.++.+   +.+..++++..++++....+.......
T Consensus        25 ~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (361)
T d1m32a_          25 TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG---PQDKVLIVSNGAYGARMVEMAGLMGIA  101 (361)
T ss_dssp             TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC---TTCCEEEEESSHHHHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh---hccccceeeehhhhhhHHHHhhhhhcc
Confidence            3444566778999999999999998776  88999999999999999873   455566666666666555554443333


Q ss_pred             cEEEEec
Q psy17798         95 FNVLGSN  101 (110)
Q Consensus        95 ~~v~~v~  101 (110)
                      ..+...+
T Consensus       102 ~~~~~~~  108 (361)
T d1m32a_         102 HHAYDCG  108 (361)
T ss_dssp             EEEEECC
T ss_pred             ccccccc
Confidence            4444433

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=3e-08  Score=69.07  Aligned_cols=77  Identities=21%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHh----CC--CCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         24 EKAVEDARQEIATLI----NC--DPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l----~~--~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      .+++.++|+++|+++    |.  +++ +|++|+|+++++.++++++.    ++||.|++.+..++.+....   +..|..
T Consensus        62 ~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~---~~~g~~  134 (382)
T d1u08a_          62 MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV----RNGDEVICFDPSYDSYAPAI---ALSGGI  134 (382)
T ss_dssp             TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCE
T ss_pred             CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc----cccceEEEecccccchhhhh---hhcccc
Confidence            345678999999987    43  565 59999999999999999988    89999999887777766544   456888


Q ss_pred             EEEecCCCCcc
Q psy17798         97 VLGSNPGQGGN  107 (110)
Q Consensus        97 v~~v~~~~~G~  107 (110)
                      +..++.++++.
T Consensus       135 ~~~~~~~~~~~  145 (382)
T d1u08a_         135 VKRMALQPPHF  145 (382)
T ss_dssp             EEEEECCTTTC
T ss_pred             ceecccccccc
Confidence            88888876543

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=98.68  E-value=3.4e-08  Score=69.00  Aligned_cols=71  Identities=13%  Similarity=0.104  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEe
Q psy17798         27 VEDARQEIATLI----N--CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGS  100 (110)
Q Consensus        27 ~~~~R~~la~~l----~--~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v  100 (110)
                      .+++|+++|+++    |  +++++|++|+|+++++.++++++.    ++||+|++...-++.+....   +..|.+.+.+
T Consensus        68 ~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~----~pgd~vi~~~p~~~~~~~~~---~~~g~~~v~~  140 (394)
T d1c7na_          68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KPGDGVIIITPVYYPFFMAI---KNQERKIIEC  140 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEECSSCCTHHHHHH---HTTTCEEEEC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc----ccccccccccCcccchhhHH---hhhhhccccc
Confidence            357899999987    3  578999999999999999999987    89999998776666655433   4568888877


Q ss_pred             cCCC
Q psy17798        101 NPGQ  104 (110)
Q Consensus       101 ~~~~  104 (110)
                      +.+.
T Consensus       141 ~~~~  144 (394)
T d1c7na_         141 ELLE  144 (394)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            7653

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=1e-08  Score=68.53  Aligned_cols=81  Identities=9%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+..+++|+.+|+++|++ .+|+||+|+|+|++.++.++.    .+++.+++....|++....+......+..+..++.
T Consensus        36 ~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (345)
T d1v72a1          36 TDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT----PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD  110 (345)
T ss_dssp             CSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC----CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH----hcCCccccccccceeeechhhHHHhcCcccccccc
Confidence            4467889999999999974 679999999999999998876    78888888888998887766555666777888777


Q ss_pred             CCCccc
Q psy17798        103 GQGGNF  108 (110)
Q Consensus       103 ~~~G~~  108 (110)
                      +.+|.+
T Consensus       111 ~~~~~~  116 (345)
T d1v72a1         111 GPAAKL  116 (345)
T ss_dssp             CGGGCC
T ss_pred             cccccc
Confidence            666544

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.62  E-value=4.1e-08  Score=68.76  Aligned_cols=74  Identities=9%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHh------CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLI------NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l------~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      .+..++|+++|+++      .+++++|++|+|+++++.+++.++.    .+||+|++.+..|+.+....   +..|++++
T Consensus        70 ~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~----~~Gd~vlv~~P~y~~~~~~~---~~~g~~~v  142 (395)
T d1xi9a_          70 EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----DPGDEILVPGPSYPPYTGLV---KFYGGKPV  142 (395)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHH---HHTTCEEE
T ss_pred             CCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc----CCCCEEEEcCCccccchhhh---hhcCCEEE
Confidence            45678999999887      3578999999999999999999887    89999998877777665543   55799999


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .+|.+.+
T Consensus       143 ~v~~~~~  149 (395)
T d1xi9a_         143 EYRTIEE  149 (395)
T ss_dssp             EEEEEGG
T ss_pred             EEecccc
Confidence            9987643

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.5e-07  Score=63.85  Aligned_cols=81  Identities=15%  Similarity=0.027  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      +.+..+.++++|+.|++++|++. ++|+|++|++++.+.++....   ..+++.+++.  ++..+...|..+ +..|..+
T Consensus        41 s~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~---~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~  115 (360)
T d1bjna_          41 GKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI---LGDKTTADYV--DAGYWAASAIKEAKKYCTPN  115 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CTTCCEEEEE--ESSHHHHHHHHHHTTTSEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc---ccccccccee--cccchhhhhHHHHhhcCccc
Confidence            45677899999999999999964 479999999999888776554   2566666653  344444455555 6677777


Q ss_pred             EEecCCCC
Q psy17798         98 LGSNPGQG  105 (110)
Q Consensus        98 ~~v~~~~~  105 (110)
                      +.+..+.+
T Consensus       116 ~~~~~~~~  123 (360)
T d1bjna_         116 VFDAKVTV  123 (360)
T ss_dssp             EEECEEEE
T ss_pred             eeeccccC
Confidence            76665433

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.52  E-value=3.9e-07  Score=62.49  Aligned_cols=83  Identities=8%  Similarity=0.032  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV   97 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v   97 (110)
                      +.+..+.++++|+.|+++++++. .+|+|++|++.+.+.++....   ..+++.+++  ++|.++...|..+ +..|.++
T Consensus        43 s~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l---~~~~~~~l~--~~~g~~~~~~~~~~~~~g~~~  117 (361)
T d2c0ra1          43 GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF---LKEGQTANY--VMTGSWASKALKEAKLIGDTH  117 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH---CCTTCEEEE--EECSHHHHHHHHHHHHHSCEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc---ccCCCceEE--EeechhhhhhhhhhhhcCcee
Confidence            45778899999999999999954 489999999888776655444   267777765  4677788777777 6789998


Q ss_pred             EEecCCCCcc
Q psy17798         98 LGSNPGQGGN  107 (110)
Q Consensus        98 ~~v~~~~~G~  107 (110)
                      ..++.+..+.
T Consensus       118 ~~~~~~~~~~  127 (361)
T d2c0ra1         118 VAASSEASNY  127 (361)
T ss_dssp             EEEECGGGTT
T ss_pred             eeeccccccc
Confidence            8887765443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=98.52  E-value=5.1e-07  Score=61.85  Aligned_cols=82  Identities=9%  Similarity=-0.044  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      +..+.+..+.++++|+.+++++|++ +..|+|++|+|++++.++..+.    .+++++++...+|.+....+. .+..+.
T Consensus        43 ~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  117 (377)
T d1vjoa_          43 GHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV----EPGDVVLIGVAGYFGNRLVDM-AGRYGA  117 (377)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHHHHHH-HHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc----ccccccceeeechhhhhhhhh-hhhhcc
Confidence            3446778899999999999999995 4578888999999999998876    789999998888887654443 344555


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      .+..+...
T Consensus       118 ~~~~~~~~  125 (377)
T d1vjoa_         118 DVRTISKP  125 (377)
T ss_dssp             EEEEEECC
T ss_pred             cccccccC
Confidence            55555443

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.2e-07  Score=65.50  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ++..++|++++++++      .++++|++|+|+++|+..+++++.    ++||.|++....|+.+....   ...|..+.
T Consensus        65 ~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~vlv~~P~y~~~~~~~---~~~~~~~~  137 (375)
T d1o4sa_          65 RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL----DPGDEVIVFSPVWVSYIPQI---ILAGGTVN  137 (375)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCEEE
T ss_pred             cCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh----CCCCEEEEccCccccchhhh---hccccccc
Confidence            456789999998874      578999999999999999999987    89999999888888776544   34677888


Q ss_pred             EecCCCC
Q psy17798         99 GSNPGQG  105 (110)
Q Consensus        99 ~v~~~~~  105 (110)
                      .++++++
T Consensus       138 ~~~~~~~  144 (375)
T d1o4sa_         138 VVETFMS  144 (375)
T ss_dssp             EEECCGG
T ss_pred             ccccccc
Confidence            8777654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.1e-07  Score=66.98  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHh----CC--CC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcE
Q psy17798         24 EKAVEDARQEIATLI----NC--DP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFN   96 (110)
Q Consensus        24 ~~~~~~~R~~la~~l----~~--~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~   96 (110)
                      ..++.++|++||+++    |.  +| ++|++|+|+++++.++++++.    .+|+.|++....+|.+....   ...|.+
T Consensus        63 ~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~----~~g~~vlv~~p~~~~y~~~~---~~~g~~  135 (418)
T d1w7la_          63 TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV----DEGDEVIIIEPFFDCYEPMT---MMAGGR  135 (418)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHH---HHTTCE
T ss_pred             CcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc----cCCceeeccccccchhHHHH---HHcCCE
Confidence            446778999999886    44  43 689999999999999999987    89999999888888887655   346888


Q ss_pred             EEEecCCC
Q psy17798         97 VLGSNPGQ  104 (110)
Q Consensus        97 v~~v~~~~  104 (110)
                      ++.++.++
T Consensus       136 ~v~~~~~~  143 (418)
T d1w7la_         136 PVFVSLKP  143 (418)
T ss_dssp             EEEEECEE
T ss_pred             eecccccc
Confidence            87777653

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.41  E-value=1e-06  Score=60.80  Aligned_cols=73  Identities=8%  Similarity=0.028  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      +..+++-+.+++++|..  ..++++|+|.|+.++++++.   +++||+|+++...+++...++.   ..|++++++.+|+
T Consensus        21 ~~~~~fE~~~~~~~~~~--~~~~~~SgT~Al~lal~~l~---~~~gdeVi~p~~t~~a~~~~~~---~~g~~pv~~Di~~   92 (374)
T d1o69a_          21 EFVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAG---VKQDDIVLASSFTFIASVAPIC---YLKAKPVFIDCDE   92 (374)
T ss_dssp             HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCGGGTHHHH---HTTCEEEEECBCT
T ss_pred             HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCcCEEEeCCcchHhhHHHHh---hccceeEeccccc
Confidence            35677888999999875  79999999999999999986   3899999999999999887764   4699999999886


Q ss_pred             C
Q psy17798        105 G  105 (110)
Q Consensus       105 ~  105 (110)
                      +
T Consensus        93 ~   93 (374)
T d1o69a_          93 T   93 (374)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=2.2e-06  Score=59.14  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         20 GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        20 ~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      +....+.++++|+.++++++++.+.++|++|+|.++..++.++.    ++|++|++...++-+. ......++.|.++..
T Consensus        28 ~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~----~~g~~vlv~~~G~f~~-~~~~~a~~~~~~~~~  102 (348)
T d1iuga_          28 TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF----APGERVLVPVYGKFSE-RFYEIALEAGLVVER  102 (348)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEECSHHHH-HHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc----cccccceeecchHHHH-HHHHHHHhcCccccc
Confidence            45677899999999999999988889999999999999999886    7899888765554442 233444778888887


Q ss_pred             ecCC
Q psy17798        100 SNPG  103 (110)
Q Consensus       100 v~~~  103 (110)
                      +..+
T Consensus       103 ~~~~  106 (348)
T d1iuga_         103 LDYP  106 (348)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            7664

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.37  E-value=1.5e-06  Score=59.23  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPK-EIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~-~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      |+ +....+.++++|+.|+++++++++ .|+|++|++++++.+..+..   ..+++.+++. .++......+..++..+.
T Consensus        41 HR-s~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~---~~~~~~v~~~-~~g~~~~~~~~~~~~~~~  115 (360)
T d1w23a_          41 HR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL---LTKGTIGNYV-LTGSWSEKALKEAKLLGE  115 (360)
T ss_dssp             TT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CCTTCEEEEE-ECSHHHHHHHHHHHTTSE
T ss_pred             cC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh---cccCccccee-eccchhhhhHHHHHHhhh
Confidence            54 556788999999999999999655 68899999888887776665   2566666654 455556667777777776


Q ss_pred             EEEEecC
Q psy17798         96 NVLGSNP  102 (110)
Q Consensus        96 ~v~~v~~  102 (110)
                      .+..+..
T Consensus       116 ~~~~~~~  122 (360)
T d1w23a_         116 THIAAST  122 (360)
T ss_dssp             EEEEEEC
T ss_pred             cceeecc
Confidence            6655543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=2.8e-06  Score=58.62  Aligned_cols=75  Identities=11%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccC--CCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEK--KKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~--g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      ..+++-+.+++++|..  .+++++|+|.|+.+++.++..   .+  +++|+++...++++..++.   ..|++++++.+|
T Consensus        32 ~v~~fE~~~~~~~g~k--~ai~~~Sgt~Al~~al~al~~---~~~~~~eVi~p~~t~~a~~~ai~---~~G~~pv~vDi~  103 (371)
T d2fnua1          32 RSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSE---FSADRNEIITTPISFVATANMLL---ESGYTPVFAGIK  103 (371)
T ss_dssp             HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSC---CCTTSCEEEECSSSCTHHHHHHH---HTTCEEEECCBC
T ss_pred             HHHHHHHHHHHHHCcC--eEEEEecHHHHHHHHHHHhcc---cCCCCCeeecccccccccceeee---ccCccccccccc
Confidence            4667778899999875  689999999999999999863   34  4589999999999988774   479999999999


Q ss_pred             CCccc
Q psy17798        104 QGGNF  108 (110)
Q Consensus       104 ~~G~~  108 (110)
                      +++..
T Consensus       104 ~~~~~  108 (371)
T d2fnua1         104 NDGNI  108 (371)
T ss_dssp             TTSSB
T ss_pred             ccccc
Confidence            87644

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.24  E-value=6.5e-06  Score=57.21  Aligned_cols=72  Identities=11%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCC
Q psy17798         26 AVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG  105 (110)
Q Consensus        26 ~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~  105 (110)
                      .+.++-+.+|+++|+.  ..++++++|.|+.++++++.   +++||+|+++...+++...+..   ..|++++++.++++
T Consensus        35 ~v~~fE~~~a~~~g~~--~~v~~~SGt~Al~lal~~l~---~~~gdeVi~p~~t~~a~~~ai~---~~g~~p~~~d~~~~  106 (384)
T d1b9ha_          35 EVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG---VGPGTEVIVPAFTFISSSQAAQ---RLGAVTVPVDVDAA  106 (384)
T ss_dssp             HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEESSSCTHHHHHHH---HTTCEEEEECBCTT
T ss_pred             HHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCCCEEEEecccccccccccc---cccccccccccccc
Confidence            4567778999999875  68999999999999999986   3899999999999999887654   47999999998863

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=98.23  E-value=1.9e-06  Score=58.94  Aligned_cols=68  Identities=16%  Similarity=0.115  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCCC
Q psy17798         28 EDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQ  104 (110)
Q Consensus        28 ~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~  104 (110)
                      .++|+++|+++++++++|++|+|+++++.+++..+.     +++.++ ....++.+...   ....++++..+|++.
T Consensus        60 ~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~-----~~~~~v-~~p~~~~~~~~---~~~~~~~~~~v~~~~  127 (355)
T d1lc5a_          60 FHLHQALARHHQVPASWILAGNGETESIFTVASGLK-----PRRAMI-VTPGFAEYGRA---LAQSGCEIRRWSLRE  127 (355)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-----CSEEEE-EESCCTHHHHH---HHHTTCEEEEEECCG
T ss_pred             HHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc-----cccccc-cCCccceeccc---cccccccceeeeeec
Confidence            579999999999999999999999999998877643     333333 33445544332   234678888888874

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.4e-06  Score=60.60  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         21 WESEKAVEDARQEIATLIN------CDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        21 ~~~~~~~~~~R~~la~~l~------~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      +....++.++|+++|+++.      .++++|+.+.+++.+....+..+......+||+|++++.-+|.+....   +..|
T Consensus        66 Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~---~~~G  142 (397)
T d3tata_          66 YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF---AGAG  142 (397)
T ss_dssp             CCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHH---HTTT
T ss_pred             CCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHH---HHcC
Confidence            3445678999999999885      256888888777765443333332222389999998887777776655   4579


Q ss_pred             cEEEEecCCCCcc
Q psy17798         95 FNVLGSNPGQGGN  107 (110)
Q Consensus        95 ~~v~~v~~~~~G~  107 (110)
                      ++++.+|++.++.
T Consensus       143 ~~~~~v~~~~~~~  155 (397)
T d3tata_         143 FEVSTYPWYDEAT  155 (397)
T ss_dssp             CCCEECCCCCTTT
T ss_pred             CEEEEEecchhhc
Confidence            9999999987643

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.9e-05  Score=54.54  Aligned_cols=85  Identities=13%  Similarity=0.013  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCC-C----cEEEeCChHHHHHHHHHHhHHhhc--------cCCCEEEEcCCCChhHHHHHH
Q psy17798         22 ESEKAVEDARQEIATLINCDP-K----EIIFTSGATESNNIAVKGVARFYK--------EKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~-~----~i~~t~gat~a~~~i~~~l~~~~~--------~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      .+.+.-.++.+.+|+++|++. +    .=++|+|+|+|+.+.+.+..++..        .....++++...|.|+..+.+
T Consensus        90 ~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~  169 (450)
T d1pmma_          90 QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR  169 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHH
Confidence            345677789999999999842 1    258999999999998877643210        122346667778888776554


Q ss_pred             HHHhCCcEEEEecCCCC-cccc
Q psy17798         89 ILEGEGFNVLGSNPGQG-GNFL  109 (110)
Q Consensus        89 ~l~~~g~~v~~v~~~~~-G~~~  109 (110)
                      .   .|++++.||++++ |.+|
T Consensus       170 ~---~gi~~~~v~~~~~~~~~d  188 (450)
T d1pmma_         170 Y---WDVELREIPMRPGQLFMD  188 (450)
T ss_dssp             H---TTCEEEECCCBTTBCSCC
T ss_pred             H---cCCCceEeeecCCCCcCc
Confidence            4   6999999999874 7655

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=98.03  E-value=1.5e-06  Score=60.54  Aligned_cols=76  Identities=8%  Similarity=0.006  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHhC------CCCCcEEEeCChH-----HHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHH
Q psy17798         23 SEKAVEDARQEIATLIN------CDPKEIIFTSGAT-----ESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILE   91 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~------~~~~~i~~t~gat-----~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~   91 (110)
                      ...++.++|+++++++.      .++++|+.+.++.     +++.++++++.    ++||+|++++.-||.+...+   +
T Consensus        69 ~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~---~  141 (401)
T d7aata_          69 PIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF----KFSRDVYLPKPSWGNHTPIF---R  141 (401)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC----TTCCEEEEEESCCTTHHHHH---H
T ss_pred             CCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc----CCCceEEEecCCCcchhhHH---H
Confidence            44678899999999873      2467777664433     35555566655    89999999888888876554   4


Q ss_pred             hCCcEEEEecCCCC
Q psy17798         92 GEGFNVLGSNPGQG  105 (110)
Q Consensus        92 ~~g~~v~~v~~~~~  105 (110)
                      ..|++++.+|++++
T Consensus       142 ~~g~~~~~~~~~~~  155 (401)
T d7aata_         142 DAGLQLQAYRYYDP  155 (401)
T ss_dssp             HTTCEEEEEECEET
T ss_pred             HcCCeEEEEecccc
Confidence            57999999998643

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=1.4e-05  Score=52.99  Aligned_cols=73  Identities=11%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +...++++.+|+++|.  ++++|++|+|+|+..++.++.    ++|+.+++....|.+...........+..+..++.+
T Consensus        34 p~~~~le~~lA~~~G~--~~~~~~~sGt~A~~~al~a~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (343)
T d1m6sa_          34 PTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHT----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK  106 (343)
T ss_dssp             HHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE
T ss_pred             HHHHHHHHHHHHHHCC--CeEEEeCCHHHHHHHHHHHHh----ccCCceeccccccceeeecccccccccceeeccccc
Confidence            4677899999999996  478999999999999998877    789999988877776654333333345556655543

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=2.8e-05  Score=54.44  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec-
Q psy17798         24 EKAVEDARQEIATLINCDP-KEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN-  101 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~-~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~-  101 (110)
                      .....+..+.+++++|.++ ...++|+++|++...++....+....++++||++..+|+|+..++..   .|++.+.|+ 
T Consensus        93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~---~g~~~~~v~~  169 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT---AGFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH---TTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHH---cCCeeEEEEe
Confidence            3444557788889999864 56788888887655544333322335778999999999999887754   588877775 


Q ss_pred             --CCCCcccc
Q psy17798        102 --PGQGGNFL  109 (110)
Q Consensus       102 --~~~~G~~~  109 (110)
                        .+++|.+|
T Consensus       170 ~~~~~~~~id  179 (445)
T d3bc8a1         170 VLEGDELRTD  179 (445)
T ss_dssp             EEETTEEECC
T ss_pred             eccCcccccC
Confidence              34556654

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=97.94  E-value=6e-06  Score=58.53  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             HHHHHHHHHh----CC--CCCcEEEeCChHHHHHHHHHHhHHh----hccCCCEEEEcCCCChhHHHHHHH
Q psy17798         29 DARQEIATLI----NC--DPKEIIFTSGATESNNIAVKGVARF----YKEKKKHVITTQTEHKCVLDSCRI   89 (110)
Q Consensus        29 ~~R~~la~~l----~~--~~~~i~~t~gat~a~~~i~~~l~~~----~~~~g~~vl~~~~e~ps~~~~~~~   89 (110)
                      ++|+.|+++.    |+  +..+|++|+|++|+++.++.+|...    ...||++||++..-||.+......
T Consensus       104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~  174 (425)
T d2hoxa1         104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY  174 (425)
T ss_dssp             HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHH
Confidence            4555665543    33  4456999999999999999998410    026889999999999988765544

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=97.84  E-value=4.9e-05  Score=53.34  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=63.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g   94 (110)
                      .|..+|...+....+.+.||++-++  +..++++++..|+..++.++.    ++||+||++..-|......+..+ ++.|
T Consensus        50 ~~~Y~R~~nPT~~~LE~~la~LEg~--~~a~~~~SGmaAi~~~l~~l~----~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G  123 (392)
T d1gc0a_          50 GHFYSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFG  123 (392)
T ss_dssp             -------CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCC--cceeehhhHHHHHHHHHHhhc----cCCCeeecccccchhhhhhhhhhhccCC
Confidence            4566777777788888999998875  456778899999999988887    89999999999999888877766 7889


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      +++.++++.
T Consensus       124 i~~~~~d~~  132 (392)
T d1gc0a_         124 VKLRHVDMA  132 (392)
T ss_dssp             CEEEEECTT
T ss_pred             cccccCCcc
Confidence            999999764

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.68  E-value=0.00024  Score=50.75  Aligned_cols=91  Identities=10%  Similarity=0.000  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCC---------CcEEEeCChHHHHHHHHHHhHHhhc------c---------CCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDP---------KEIIFTSGATESNNIAVKGVARFYK------E---------KKK   71 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~---------~~i~~t~gat~a~~~i~~~l~~~~~------~---------~g~   71 (110)
                      .+..+...+..-.++-+.+++++|.+.         ..-+||+|+|+++-..+.+......      .         +.-
T Consensus       104 ~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~  183 (476)
T d1js3a_         104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL  183 (476)
T ss_dssp             SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCce
Confidence            455566666677778889999998642         2468999999999888765432110      0         122


Q ss_pred             EEEEcCCCChhHHHHHHHHHhCCcEEEEecCCCCcccc
Q psy17798         72 HVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        72 ~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~~~G~~~  109 (110)
                      .|++++..|+|+..+...+   |+.++.||+|++|.+|
T Consensus       184 vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~md  218 (476)
T d1js3a_         184 VAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMR  218 (476)
T ss_dssp             EEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCC
T ss_pred             EEEecccccHHHHHHHHhc---CceEEEeccCCCCCcC
Confidence            6888999999998887655   8889999999998876

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=97.38  E-value=0.00045  Score=48.39  Aligned_cols=82  Identities=12%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      |..+|...+....+-+.+|.+-+.  +.-++++++..|+..++.++.    ++||+||++..-|......... +.+.|+
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg--~~a~~~sSGmaAi~~~l~~ll----~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi  128 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGI  128 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCC--ccceeehHHHHHHHHHHhhcc----CCCCeeeeecccccccchhhhcccCCCce
Confidence            455566666777888888888775  346778888899988888876    8999999999888877776654 478899


Q ss_pred             EEEEecCCC
Q psy17798         96 NVLGSNPGQ  104 (110)
Q Consensus        96 ~v~~v~~~~  104 (110)
                      ++..+..++
T Consensus       129 ~~~~vd~~d  137 (397)
T d1y4ia1         129 NVRFVDAGK  137 (397)
T ss_dssp             EEEEECTTS
T ss_pred             EeeccCCCC
Confidence            999987653

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.0005  Score=48.00  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..+|...+....+-+.+|++-++  +..+.++++..|+..++.++.    ++||+||++..-|......+... .+.|+
T Consensus        50 ~~Y~R~~nPt~~~le~~la~LEg~--~~a~~~~SGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi  123 (391)
T d1cl1a_          50 LFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  123 (391)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             eEeECCCChhHHHHHHHHHHHhCC--ccEEEeccccceeeehhhccc----CCCCeEEEecccccchhhhhhhccccccc
Confidence            445566667777888888888775  568888999999999888886    89999999999999888887764 78899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++..+
T Consensus       124 ~~~~~d~~  131 (391)
T d1cl1a_         124 TTSWFDPL  131 (391)
T ss_dssp             EEEEECTT
T ss_pred             ccccccCc
Confidence            99998754

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.30  E-value=0.00094  Score=46.71  Aligned_cols=82  Identities=11%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g   94 (110)
                      .|..+|...+....+-+.||++-|+  +..++++++..|+..++.++.    ++||+||.+..-|......+..+ ++.|
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g  131 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  131 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCC--ceEEEecCcchHHHHHHhhcc----cccccccccccccchhhhhhcccccccc
Confidence            4566777777888899999998876  467888888999999888876    89999999998888877776665 7789


Q ss_pred             cEEEEecCC
Q psy17798         95 FNVLGSNPG  103 (110)
Q Consensus        95 ~~v~~v~~~  103 (110)
                      +++.++...
T Consensus       132 i~~~~~~~~  140 (398)
T d1qgna_         132 ITATVIDPA  140 (398)
T ss_dssp             CEEEEECSS
T ss_pred             ccccccccc
Confidence            999888643

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.26  E-value=0.0006  Score=47.34  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ....+.-..++++++.+........|++.++..++.+...  ..++++|+++...|||+..++.   ..|++.+.|++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~--~~~~~~vi~s~~~H~s~~k~~~---~~g~~~~~v~~  185 (434)
T d2z67a1         113 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARK--KYGSNVVIYPYASHKSPIKAVS---FVGMNMRLVET  185 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHHHH---HTTCEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHH--hhcCceEEEeccCCHHHHHHHH---HhCCcceEEEe
Confidence            3444555567777887665555556666666666666532  2478999999999999887654   46888777763

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=97.22  E-value=0.0017  Score=44.24  Aligned_cols=69  Identities=14%  Similarity=0.051  Sum_probs=55.1

Q ss_pred             HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEecCCC
Q psy17798         30 ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGSNPGQ  104 (110)
Q Consensus        30 ~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v~~~~  104 (110)
                      +-+.+|.+-|+  +..+.++++..|+..++.++.    ++||+||++..-|......++.. ++.|+++.++..++
T Consensus         3 LE~~la~Leg~--~~a~~~sSGMaAi~~~l~~ll----~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d   72 (331)
T d1pffa_           3 LEGKIAKLEHA--EACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAV   72 (331)
T ss_dssp             HHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTS
T ss_pred             HHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccc
Confidence            45678887775  456777888999988888876    89999999988887777776654 78999999998764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.20  E-value=0.00013  Score=50.09  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhC----C-CCCcEEEeCChHHHHH--HHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCc
Q psy17798         23 SEKAVEDARQEIATLIN----C-DPKEIIFTSGATESNN--IAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGF   95 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~----~-~~~~i~~t~gat~a~~--~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~   95 (110)
                      ...++.++|+++++++.    . .+.+.++|.+++.+..  +.+..+.    .+||.|++++.-++.+...++   ..|+
T Consensus        67 p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~gd~V~~p~p~~~~y~~~~~---~~g~  139 (394)
T d2ay1a_          67 GLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA----NPDLRVFVSDPTWPNHVSIMN---FMGL  139 (394)
T ss_dssp             CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH----CTTCCEEEEESCCHHHHHHHH---HHTC
T ss_pred             CCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc----CCceEEEEecccccchHHHHH---HcCC
Confidence            34578899999999873    1 2334445555544444  4333333    899999998888888776554   4588


Q ss_pred             EEEEecCCC
Q psy17798         96 NVLGSNPGQ  104 (110)
Q Consensus        96 ~v~~v~~~~  104 (110)
                      +++.+|...
T Consensus       140 ~~v~~~~~~  148 (394)
T d2ay1a_         140 PVQTYRYFD  148 (394)
T ss_dssp             CEEEEECEE
T ss_pred             EEEEecccc
Confidence            999988754

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=97.15  E-value=0.0014  Score=45.71  Aligned_cols=82  Identities=18%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHH-HHhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRI-LEGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~-l~~~g~   95 (110)
                      |..+|...+....+-+.||++-|+  +..+..+++..|+..++.++.    ++||+|+++..-|......+.. +.+.|+
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~--~~a~~~sSGmaAi~~~~l~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~gi  124 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGI  124 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--cceeeeccchHHHHHHHHhhc----ccccccccccceeehhhHhHHHHhhccce
Confidence            555666667778888889888775  356777788889988887776    8999999999888777665554 478999


Q ss_pred             EEEEecCCC
Q psy17798         96 NVLGSNPGQ  104 (110)
Q Consensus        96 ~v~~v~~~~  104 (110)
                      ++.++..++
T Consensus       125 ~~~~~d~~d  133 (394)
T d1e5ea_         125 QVDFINTAI  133 (394)
T ss_dssp             EEEEECTTS
T ss_pred             eeeccCCCC
Confidence            999997654

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.0013  Score=44.89  Aligned_cols=66  Identities=11%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhHHhhccCCCEE-EEc-CCCChhHHHHHHHHHhCCcEEE
Q psy17798         25 KAVEDARQEIATLINCD-PKEIIFTSGATESNNIAVKGVARFYKEKKKHV-ITT-QTEHKCVLDSCRILEGEGFNVL   98 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~-~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~v-l~~-~~e~ps~~~~~~~l~~~g~~v~   98 (110)
                      ...+++|+..++.++.+ .+++++|+|+++|+..++.++.     +++.| +++ ...|+++.....   ..|++++
T Consensus        50 ~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-----~~~~vi~~~~~~~~~~~~~~~~---l~g~~~v  118 (366)
T d2aeua1          50 YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-----PKKVIHYLPELPGHPSIERSCK---IVNAKYF  118 (366)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-----CSEEEEECSSSSCCTHHHHHHH---HTTCEEE
T ss_pred             hhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-----CCCEEEEecCCCcchhHHHHHH---hcCCeEE
Confidence            35677888889999875 4679999999999999988864     55554 444 357888776543   3576643

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00047  Score=47.42  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHhC------CCCCc--EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCC
Q psy17798         23 SEKAVEDARQEIATLIN------CDPKE--IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEG   94 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~------~~~~~--i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g   94 (110)
                      ...++.++|+++|+++.      ..++.  ++.|.+++.++.+.+..+..  ..+||.|++++..+|.+....   +..|
T Consensus        67 p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~gd~Vlvp~P~y~~y~~~~---~~~g  141 (396)
T d2q7wa1          67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAK--NTSVKRVWVSNPSWPNHKSVF---NSAG  141 (396)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH--HSCCCEEEEEESCCTHHHHHH---HHTT
T ss_pred             CCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhh--cccceEEEEecCCCccchHHH---HHcC
Confidence            34578899999999873      12333  44677777777666555432  279999999888888877655   4579


Q ss_pred             cEEEEecCCCC
Q psy17798         95 FNVLGSNPGQG  105 (110)
Q Consensus        95 ~~v~~v~~~~~  105 (110)
                      ++++.+|...+
T Consensus       142 ~~~~~~~~~~~  152 (396)
T d2q7wa1         142 LEVREYAYYDA  152 (396)
T ss_dssp             CEEEEEECEET
T ss_pred             CeeEecccccc
Confidence            99999988654

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.0018  Score=45.53  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..+|...+....+-+.||.+-++  +.-+.++++..|+..++.++.    ++||+||++..-|......+..+ .+.|+
T Consensus        50 ~~YsR~~nPT~~~LE~~la~LE~~--~~a~~~~SGmaAi~~~~~~l~----~~gd~il~~~~~Yg~t~~l~~~~~~~~gi  123 (421)
T d2ctza1          50 NIYSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGI  123 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTC
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHhhc----ccccceeecCCcCCchhHHHHHHHhhccc
Confidence            444555556677788888888775  356677777888888888876    89999999998888887776655 78999


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++..+
T Consensus       124 ~~~~~d~~  131 (421)
T d2ctza1         124 EVRFTSRE  131 (421)
T ss_dssp             EEEECCTT
T ss_pred             cceecccc
Confidence            99998654

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0045  Score=42.84  Aligned_cols=72  Identities=13%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+..+++.+.+|++++.  +.+++++++++|+..++.++.    .++|.|++....|++......   ..+.++..++.
T Consensus        88 ~~~~~~~lE~~lA~~~g~--e~al~~~SG~~An~~~i~~l~----~~~d~i~~d~~~h~s~~~G~~---~~~a~~~~~~~  158 (401)
T d1fc4a_          88 TQDSHKELEQKLAAFLGM--EDAILYSSCFDANGGLFETLL----GAEDAIISDALNHASIIDGVR---LCKAKRYRYAN  158 (401)
T ss_dssp             CBHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHTTHHHHC----CTTCEEEEETTCCHHHHHHHH---TSCSEEEEECT
T ss_pred             CcHHHHHHHHHHHHhhcC--CceEEecchhhhhHHHHHHhc----CCCcEEEeCCcchHHHHcccc---ccCceEEEEcC
Confidence            346777899999999985  568999999999999998887    899999999999999765442   34566666554


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      .
T Consensus       159 ~  159 (401)
T d1fc4a_         159 N  159 (401)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=96.70  E-value=0.00051  Score=47.65  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHhC-C-----CCCcEEE--eCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhC
Q psy17798         22 ESEKAVEDARQEIATLIN-C-----DPKEIIF--TSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGE   93 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~-~-----~~~~i~~--t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~   93 (110)
                      ....++.++|+++++++. .     .++.++.  +.+++.++.+++..+.  ...+||.|++++.-+|.+....   +..
T Consensus        70 ~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gd~Vlip~P~~~~y~~~~---~~~  144 (412)
T d1yaaa_          70 LGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANHMAIF---ENQ  144 (412)
T ss_dssp             CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTHHHHH---HTT
T ss_pred             CCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHh--ccCCCCEEecccccCchhHHHH---HHc
Confidence            345678999999999873 1     2233322  2334444443332222  2379999999988888876544   557


Q ss_pred             CcEEEEecCCCC
Q psy17798         94 GFNVLGSNPGQG  105 (110)
Q Consensus        94 g~~v~~v~~~~~  105 (110)
                      |++++.+|...+
T Consensus       145 g~~~~~~~~~~~  156 (412)
T d1yaaa_         145 GLKTATYPYWAN  156 (412)
T ss_dssp             TCCEEEEECEET
T ss_pred             CCceeccccccc
Confidence            999999987543

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=96.60  E-value=0.00092  Score=46.15  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHhC------CCCCc--EEEeCChHHHHHHHHHHhHHh---hccCCCEEEEcCCCChhHHHHHHHH
Q psy17798         22 ESEKAVEDARQEIATLIN------CDPKE--IIFTSGATESNNIAVKGVARF---YKEKKKHVITTQTEHKCVLDSCRIL   90 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~------~~~~~--i~~t~gat~a~~~i~~~l~~~---~~~~g~~vl~~~~e~ps~~~~~~~l   90 (110)
                      ....+++++|+++++++.      .+++.  ++.|++.+.++.....++...   .+.+||.|++++.-+|.+...+   
T Consensus        71 ~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~---  147 (412)
T d1ajsa_          71 LPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF---  147 (412)
T ss_dssp             CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH---
T ss_pred             CCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHH---
Confidence            345678999999999873      23444  556777777777666655321   1489999999888888776655   


Q ss_pred             HhCCcEEEEe
Q psy17798         91 EGEGFNVLGS  100 (110)
Q Consensus        91 ~~~g~~v~~v  100 (110)
                      +..|++.+.+
T Consensus       148 ~~~G~~~v~~  157 (412)
T d1ajsa_         148 TTAGFKDIRS  157 (412)
T ss_dssp             HHTTCSCEEE
T ss_pred             HHcCCeEEEe
Confidence            3467765443

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.019  Score=39.29  Aligned_cols=72  Identities=8%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         24 EKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        24 ~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+...++-+.||++++.  +..++.++++.|+..++.++.    .++|.|++....|.+.....   +..+.+++.++.+
T Consensus        82 ~~~~~~lE~~LA~~~g~--e~al~~~SG~~an~~~i~al~----~~~d~v~~d~~~h~si~~g~---~~~~~~~~~~~hn  152 (383)
T d1bs0a_          82 SVVHQALEEELAEWLGY--SRALLFISGFAANQAVIAAMM----AKEDRIAADRLSHASLLEAA---SLSPSQLRRFAHN  152 (383)
T ss_dssp             CHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH---HTSSSEEEEECTT
T ss_pred             chHHHHHHHHHHHhcCC--CceEEecccchhhHHHHHhhc----CCCceEEeeccccHHHhhcc---ccCCCcceEecch
Confidence            45778889999999985  478888899999999999887    89999999999888876544   3456777777754


Q ss_pred             C
Q psy17798        104 Q  104 (110)
Q Consensus       104 ~  104 (110)
                      +
T Consensus       153 d  153 (383)
T d1bs0a_         153 D  153 (383)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0091  Score=41.37  Aligned_cols=81  Identities=11%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..+|...+....+.+.+|++-++  +..+.++++..|+..++.++.    ++||+|+++..-|......+..+ ++.|+
T Consensus        42 ~~Y~R~~nPt~~~le~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g~  115 (384)
T d1cs1a_          42 HDYSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY  115 (384)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CcccCCCCHHHHHHHHHHHHHhCC--CceEEecChHHHHHHHHhhcc----cccceecccccccchhhhhhhhhhccccc
Confidence            445566667788888999998875  457788888889998888876    89999999988887776666665 56688


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++...
T Consensus       116 ~~~~~d~~  123 (384)
T d1cs1a_         116 RVLFVDQG  123 (384)
T ss_dssp             EEEEECTT
T ss_pred             ccccccCC
Confidence            88887653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=96.39  E-value=0.012  Score=41.29  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      +.+.++.+.+|+++|.+  ..++++++|.|+.++++++.    ++||+|+.... +.+....   ....|+..+.+..
T Consensus        75 pt~~~lE~~~a~l~G~e--~al~~~SGt~An~~a~~~l~----~~Gd~Vi~~~~-f~~~~~~---i~~~g~~~~~~~~  142 (456)
T d1c7ga_          75 ENFYHLEKTVKELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQYVAGNMY-FTTTRFH---QEKNGATFVDIVR  142 (456)
T ss_dssp             HHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTEEEEESSC-CHHHHHH---HHHTTEEEEECBC
T ss_pred             chHHHHHHHHHHHhCCC--eEEECCCHHHHHHHHHHHhc----CCCCeEecCcc-hHHHHHH---HHHcCceeeeccc
Confidence            35678889999999975  68999999999999999887    89999885432 3333322   2346777666544

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00087  Score=47.14  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCR   88 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~   88 (110)
                      |-|+.+ |..|-+..+.++. +.+...+++++...+|-. .+++.|+..++.++.    +|||+|+..+..|...+....
T Consensus        57 G~pg~R-yy~G~~~iD~iE~la~~ra~~lF~a~~anVqp-~SGs~AN~av~~All----~pGD~Il~l~l~~GGHlshg~  130 (416)
T d1dfoa_          57 GYPGKR-YYGGCEYVDIVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL----EPGDTVLGMNLAHGGHLTHGS  130 (416)
T ss_dssp             EETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC----CTTCEEEEECTTTTCCGGGTC
T ss_pred             CCCCCc-ccCCChhHHHHHHHHHHHHHHHhCCCcceeec-ccCccHHHHHHHHhc----CCCCeeeeccccccccccccc
Confidence            456653 4555555566665 566677789987666655 455677888888887    899999998877766443221


Q ss_pred             HH--HhCCcEEEEecCCCCcccc
Q psy17798         89 IL--EGEGFNVLGSNPGQGGNFL  109 (110)
Q Consensus        89 ~l--~~~g~~v~~v~~~~~G~~~  109 (110)
                      ..  .....+....++|++|.||
T Consensus       131 ~~~~~g~~~~~~~y~~d~~~~ID  153 (416)
T d1dfoa_         131 PVNFSGKLYNIVPYGIDATGHID  153 (416)
T ss_dssp             TTSHHHHHSEEEEECBCSSSSBC
T ss_pred             cccccCceEEEEecccCCccCcc
Confidence            11  1123677888888888876

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.23  E-value=0.01  Score=41.03  Aligned_cols=80  Identities=8%  Similarity=0.018  Sum_probs=59.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCc
Q psy17798         17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGF   95 (110)
Q Consensus        17 ~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~   95 (110)
                      |..+|...+..+.+-+.+|.+-++  +..+.++++..|+..+ .++.    ++||+||++..-|......+... .+.|+
T Consensus        41 ~~Y~R~~nPt~~~le~~la~LE~~--~~a~~fsSGMaAisal-l~ll----~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi  113 (380)
T d1ibja_          41 YDYTRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAV-THLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGV  113 (380)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHH-HTTS----CTTCEEEEESSCCHHHHHHHHHTSGGGTC
T ss_pred             ceeeCCCChHHHHHHHHHHHHcCC--ceEEehhhHHHHHHHH-HHhh----CCCCEEEEEecccccccchhhhhhccccc
Confidence            445555566777888889988876  3456666667788754 3444    89999999999999888877765 67899


Q ss_pred             EEEEecCC
Q psy17798         96 NVLGSNPG  103 (110)
Q Consensus        96 ~v~~v~~~  103 (110)
                      ++.++..+
T Consensus       114 ~~~~~d~~  121 (380)
T d1ibja_         114 VVKRVNTT  121 (380)
T ss_dssp             EEEEECTT
T ss_pred             cccccCcc
Confidence            99988754

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.017  Score=40.62  Aligned_cols=83  Identities=18%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCCcEEEEe
Q psy17798         22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNVLGS  100 (110)
Q Consensus        22 ~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g~~v~~v  100 (110)
                      ...+.+.++.+.|+++.|.+.-+.-.-.|+|.....++.+...   .++++++++...||+........ +..|++++.+
T Consensus       105 G~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~---~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v  181 (437)
T d1wyua1         105 GVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTL  181 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhh---hcccccccccccChHHhhhhhhhcccceeeEEee
Confidence            4557888999999999998766666667777776666554432   46778999999999998876665 6689999999


Q ss_pred             cCCCCcc
Q psy17798        101 NPGQGGN  107 (110)
Q Consensus       101 ~~~~~G~  107 (110)
                      |.++++.
T Consensus       182 ~~~~~~~  188 (437)
T d1wyua1         182 PLEGGRT  188 (437)
T ss_dssp             CCBTTBC
T ss_pred             ecccccc
Confidence            9876554

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=95.78  E-value=0.054  Score=37.44  Aligned_cols=72  Identities=15%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh---ccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEec
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY---KEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSN  101 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~---~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~  101 (110)
                      +.+.++++.+++++|.  +.++|++++++|+..+++++....   ...+..++....-|.+.....   ...|...+.++
T Consensus        75 ~~~~~le~~~a~l~g~--~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~---~~~g~~~~~~~  149 (465)
T d1ax4a_          75 RNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV---ELNGCKAINIV  149 (465)
T ss_dssp             HHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH---HHTTCEEEECB
T ss_pred             hHHHHHHHHHHHHHCC--CEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH---HHcCCeeeccc
Confidence            3567899999999986  579999999999999999886311   123344555555555544322   33577776654

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.02  Score=39.63  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=57.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHH-HhCC
Q psy17798         16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEG   94 (110)
Q Consensus        16 ~~~~~~~~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l-~~~g   94 (110)
                      .|..+|...+..+.+-+.||++-++  +.-+.++++..|+..++ .+.    ++||+||++..-|......+... .+.|
T Consensus        46 ~y~YsR~gnPT~~~lE~~la~LE~~--~~a~~~sSGmaAi~~~l-~~l----~~gd~iv~~~~~yg~t~~~~~~~l~~~g  118 (393)
T d1n8pa_          46 TYEYSRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATIL-QSL----PQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHH-HTS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             CeeeeCCCChHHHHHHHHHHHHhCC--ceEEEecCchhHHHhhh-hcc----cCCCeeeeeeeecccchhhhhhhhhccc
Confidence            4556666667788888899988775  34455555566776554 333    68999999988888777766665 6789


Q ss_pred             cEEEEecC
Q psy17798         95 FNVLGSNP  102 (110)
Q Consensus        95 ~~v~~v~~  102 (110)
                      +++..+..
T Consensus       119 i~~~~~~~  126 (393)
T d1n8pa_         119 VETSFTND  126 (393)
T ss_dssp             SCCEEESS
T ss_pred             ceeEEeec
Confidence            98888764

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.50  E-value=0.31  Score=33.44  Aligned_cols=74  Identities=11%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecC
Q psy17798         23 SEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNP  102 (110)
Q Consensus        23 ~~~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~  102 (110)
                      ..+...++-+.+|+++|.  +..++.+++..|+..++.++..  ..+++.|+....-|-|.....   +..+++++..+.
T Consensus        88 ~~~~h~~LE~~lA~~~g~--e~all~~sG~~An~~~i~~l~~--~~~~d~i~~D~~~Hasi~~g~---~ls~a~~~~f~H  160 (396)
T d2bwna1          88 TTAYHRRLEAEIAGLHQK--EAALVFSSAYNANDATLSTLRV--LFPGLIIYSDSLNHASMIEGI---KRNAGPKRIFRH  160 (396)
T ss_dssp             CBHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHHHH--HSTTCEEEEETTCCHHHHHHH---HHSCCCEEEECT
T ss_pred             CchHHHHHHHHHHHHhCC--CceeeeecchHHHHHHHHHHhc--ccCCCceeehhhhhhccchhh---hccccCceEeec
Confidence            345778899999999997  4577777777888888887752  167888888888888765544   335677777765


Q ss_pred             C
Q psy17798        103 G  103 (110)
Q Consensus       103 ~  103 (110)
                      +
T Consensus       161 n  161 (396)
T d2bwna1         161 N  161 (396)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.046  Score=37.94  Aligned_cols=75  Identities=9%  Similarity=0.045  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhh-----ccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEE
Q psy17798         25 KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEKKKHVITTQTEHKCVLDSCRILEGEGFNVLG   99 (110)
Q Consensus        25 ~~~~~~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~-----~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~   99 (110)
                      +.+.++.+.+++++|.+  .+++++++++|+.+++.++....     ..+...++.+..-|+......   ...|+.++.
T Consensus        74 ~~~~~le~~~a~l~G~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~G~~~~~  148 (467)
T d2v1pa1          74 RSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS---QINGCTVRN  148 (467)
T ss_dssp             HHHHHHHHHHHHHTCCS--EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHH---HHTTCEEEE
T ss_pred             chHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHH---HHcCCeeee
Confidence            45678899999999974  68999999999999999886211     122334555555555544433   346888888


Q ss_pred             ecCCC
Q psy17798        100 SNPGQ  104 (110)
Q Consensus       100 v~~~~  104 (110)
                      ++.+.
T Consensus       149 ~~~~~  153 (467)
T d2v1pa1         149 VYIKE  153 (467)
T ss_dssp             CBCTT
T ss_pred             ccccc
Confidence            87663

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.00  E-value=0.0079  Score=41.99  Aligned_cols=93  Identities=20%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH---
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD---   85 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~---   85 (110)
                      +-|+.+ |..|-+..+.++. +.+.+.+++++..-+|=..| ++.|+..++.++.    +|||+|+..++++...+.   
T Consensus        54 G~pg~r-yy~G~~~id~iE~la~~ra~~lF~a~~anVqp~S-Gs~An~av~~all----~pGD~im~l~l~~GGHlshg~  127 (405)
T d1kl1a_          54 GYPGRR-YYGGCEYVDIVEELARERAKQLFGAEHANVQPHS-GAQANMAVYFTVL----EHGDTVLGMNLSHGGHLTHGS  127 (405)
T ss_dssp             EETTEE-SSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSS-HHHHHHHHHHHHC----CTTCEEEEECGGGTCCGGGTC
T ss_pred             CCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCCcceeeccC-chHHHHHHHHHhc----CCCCEEEEeecccccccccCc
Confidence            456653 4555555566665 66777789998765555554 4567777888876    899999987644333221   


Q ss_pred             HHHHHHhCCcEEEEecCCC-Ccccc
Q psy17798         86 SCRILEGEGFNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        86 ~~~~l~~~g~~v~~v~~~~-~G~~~  109 (110)
                      .... .....+....|+|+ ++.||
T Consensus       128 ~~~~-~g~~~~~~~y~~d~~~~~ID  151 (405)
T d1kl1a_         128 PVNF-SGVQYNFVAYGVDPETHVID  151 (405)
T ss_dssp             TTSH-HHHHSEEEEECBCTTTCSBC
T ss_pred             cccc-cceEEEEEEeccchhccccc
Confidence            1111 11246778888885 45565

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.73  E-value=0.13  Score=36.42  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCc--E-EEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKE--I-IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLD   85 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~--i-~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~   85 (110)
                      +-|+.+ |..|-+..+.++. +.+.+.++|+++++.  + +=..+++.|+..++.++.    +|||+|+..++++...+.
T Consensus        62 G~pg~R-yy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all----~pgD~im~~~l~~GGHls  136 (470)
T d1rv3a_          62 GYPGQR-YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV----EPHGRIMGLDLPDGGHLT  136 (470)
T ss_dssp             EETTEE-SSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT----CTTCEEEEECGGGTCCGG
T ss_pred             CCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc----CCCCeEeeeccccCCccc
Confidence            445553 4445555556555 667777899987643  2 223567788888888887    899999986654333221


Q ss_pred             HH-------HHHHhCCcEEEEecCCCC-cccc
Q psy17798         86 SC-------RILEGEGFNVLGSNPGQG-GNFL  109 (110)
Q Consensus        86 ~~-------~~l~~~g~~v~~v~~~~~-G~~~  109 (110)
                      --       ........+....++|++ |.||
T Consensus       137 hg~~~~~~~~~~~~~~~~~~~y~v~~~~~~ID  168 (470)
T d1rv3a_         137 HGFMTDKKKISATSIFFESMAYKVNPDTGYID  168 (470)
T ss_dssp             GCCBCSSCBCSHHHHHSEEEEECBCTTTCSBC
T ss_pred             ccccccCCCcccccceeEeeEEEEecccCccc
Confidence            10       000112367888899865 7776

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=93.43  E-value=0.035  Score=39.27  Aligned_cols=94  Identities=12%  Similarity=0.127  Sum_probs=42.1

Q ss_pred             CCCCCcCChHHHHHHHHHHH-HHHHHHHHhCCCCCc----EEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHH
Q psy17798         10 GNPHSRTHAYGWESEKAVED-ARQEIATLINCDPKE----IIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL   84 (110)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~-~R~~la~~l~~~~~~----i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~   84 (110)
                      +-|+. -|..|-+..+.++. +++.+.++++++..+    |=. .+++.|+..++.+|.    +|||+|+.-++++...+
T Consensus        58 G~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp-~SGs~An~av~~all----~pgD~Im~l~l~~GGHl  131 (463)
T d2a7va1          58 GYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPANLAVYTALL----QPHDRIMGLDLPDGGHL  131 (463)
T ss_dssp             C-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHHHHHHHHHHC----CSCEECCC---------
T ss_pred             CCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccc-cccHHHHHHHHHHHc----CCCceEEeeccCcCccc
Confidence            45665 35556665566665 577788899998763    433 456677888888876    89999987665554433


Q ss_pred             HHH-----HHHHhCC--cEEEEecCCC-Ccccc
Q psy17798         85 DSC-----RILEGEG--FNVLGSNPGQ-GGNFL  109 (110)
Q Consensus        85 ~~~-----~~l~~~g--~~v~~v~~~~-~G~~~  109 (110)
                      .--     ..+...|  .+....++|+ +|.||
T Consensus       132 shg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~ID  164 (463)
T d2a7va1         132 THGYMSDVKRISATSIFFESMPYKLNPKTGLID  164 (463)
T ss_dssp             ----------------------CCBCTTTCSBC
T ss_pred             ccccccccccccceeeEeeeeeeeccCCCCcCc
Confidence            111     1111122  3555566674 57665

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.43  E-value=0.88  Score=28.99  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             CcEEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         43 KEIIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        43 ~~i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+|++.+|++.+|-. ++..|..   +.|.+|++..-.........+.++..|.++..+++|
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~---~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D   61 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCR---LFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD   61 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHH---HSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CeEEEECCCCCHHHHHHHHHHHH---hCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            456666666666543 3344431   235566665555444445555555555555555554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.22  E-value=1.4  Score=27.74  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=35.3

Q ss_pred             CcEEEeCChHHHHHHH-HHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         43 KEIIFTSGATESNNIA-VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        43 ~~i~~t~gat~a~~~i-~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +.|++..|++.++-.. +..|.    +.|.+|++..............++..|.++..++.|
T Consensus        10 nKvalITGas~GIG~a~a~~la----~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~D   67 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLA----KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD   67 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHT----TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH----HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            3455555555555443 33333    788888877665555555566666677777777766

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.74  E-value=1.9  Score=27.16  Aligned_cols=56  Identities=9%  Similarity=0.049  Sum_probs=34.8

Q ss_pred             cEEEeCChHHHHHHH-HHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         44 EIIFTSGATESNNIA-VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        44 ~i~~t~gat~a~~~i-~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      .+++..|++.++-.. +..|.    +.|-+|++............+.++..|.++..++.|
T Consensus        12 K~alITGas~GIG~aia~~la----~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~D   68 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFA----TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD   68 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH----TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            455555555555443 33333    788888877665555555566666677777777766

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.63  E-value=1.4  Score=27.95  Aligned_cols=61  Identities=21%  Similarity=0.162  Sum_probs=33.7

Q ss_pred             CCCCCcEEEeCChHHHHHHHHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         39 NCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        39 ~~~~~~i~~t~gat~a~~~i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +.+..-+++|.++.--=..++..|.    +.|-+|++.+............++..|.++..++.|
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la----~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~D   65 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA----SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD   65 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEee
Confidence            3444445555544432222334444    677777776665555555556666667777666665

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.75  E-value=1.5  Score=27.68  Aligned_cols=55  Identities=9%  Similarity=0.114  Sum_probs=31.1

Q ss_pred             EEEeCChHHHHHH-HHHHhHHhhccCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         45 IIFTSGATESNNI-AVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        45 i~~t~gat~a~~~-i~~~l~~~~~~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +++..|++.++-. ++..|.    +.|-+|++.+............++..|.++..+++|
T Consensus         7 ~alITGas~GIG~aia~~la----~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~D   62 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLA----EEGTAIALLDMNREALEKAEASVREKGVEARSYVCD   62 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             EEEEeCCCCHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            4444444444433 334444    677777776665555455555556667777777665

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.85  E-value=2.4  Score=26.76  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=18.8

Q ss_pred             cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +.|-+|+++...........+.++..|..+..+++|
T Consensus        28 ~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D   63 (258)
T d1ae1a_          28 GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCD   63 (258)
T ss_dssp             HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEee
Confidence            566666665544333344444445555555555554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.53  E-value=1.7  Score=27.47  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=21.4

Q ss_pred             cCCCEEEEcCCCChhHHHHHHHHHhCCcEEEEecCC
Q psy17798         68 EKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPG  103 (110)
Q Consensus        68 ~~g~~vl~~~~e~ps~~~~~~~l~~~g~~v~~v~~~  103 (110)
                      +.|-+|++..............++..+.++..+++|
T Consensus        30 ~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~D   65 (259)
T d1xq1a_          30 GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD   65 (259)
T ss_dssp             HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEecc
Confidence            667777766555444455555555556666666655