Psyllid ID: psy17823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MPFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHNN
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHcEEHHEHHccc
Coil and Loop (DISEMBL)
MPFAISFslrfrddktiavTVPSVLRAFVDLHDFTDLILVQALRQFLWsfrlpgeaQKIDRMMECFAQRycqlnpniftntahthrlkghnn
Flexible Loop (DISEMBL)
mpfaisfslrfrddktiAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFtntahthrlkghnn
Low Complexity Region (SEG)
MPFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHNN
Disordered region (IsUnstruct)
***AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH*********
Disordered Region (DISOPRED)
*PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGH**
Disordered Region (DISEMBL)
MPFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHNN
Disordered Region (DISPRO)
*PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHNN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAHTHRLKGHNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P63035	400	Cytohesin-2 OS=Rattus nor	yes	N/A	0.641	0.147	0.830	7e-24
P63034	400	Cytohesin-2 OS=Mus muscul	yes	N/A	0.641	0.147	0.830	7e-24
Q99418	400	Cytohesin-2 OS=Homo sapie	yes	N/A	0.641	0.147	0.813	1e-23
Q2KI41	410	Cytohesin-2 OS=Bos taurus	yes	N/A	0.641	0.143	0.813	1e-23
Q76MY7	399	Cytohesin-2 OS=Chlorocebu	N/A	N/A	0.641	0.147	0.813	1e-23
P97694	398	Cytohesin-1 OS=Rattus nor	no	N/A	0.793	0.183	0.679	6e-23
Q9QX11	398	Cytohesin-1 OS=Mus muscul	no	N/A	0.793	0.183	0.679	6e-23
Q15438	398	Cytohesin-1 OS=Homo sapie	no	N/A	0.630	0.145	0.810	1e-22
Q76MZ1	398	Cytohesin-1 OS=Chlorocebu	N/A	N/A	0.630	0.145	0.810	1e-22
P97696	400	Cytohesin-3 OS=Rattus nor	no	N/A	0.706	0.162	0.7	5e-22

>sp|P63035|CYH2_RAT Cytohesin-2 OS=Rattus norvegicus GN=Cyth2 PE=1 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           SVL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 124 SVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.
Rattus norvegicus (taxid: 10116)

>sp|P63034|CYH2_MOUSE Cytohesin-2 OS=Mus musculus GN=Cyth2 PE=1 SV=2

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           SVL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 124 SVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q99418|CYH2_HUMAN Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 124 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q2KI41|CYH2_BOVIN Cytohesin-2 OS=Bos taurus GN=CYTH2 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 124 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q76MY7|CYH2_CHLAE Cytohesin-2 OS=Chlorocebus aethiops GN=CYTH2 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 124 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Chlorocebus aethiops (taxid: 9534)

>sp|P97694|CYH1_RAT Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/78 (67%), Positives = 59/78 (75%), Gaps = 5/78 (6%)

Query: 4   AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
           AI   L  RD+ +I      VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 111 AIGDYLGERDEFSI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 165

Query: 64  ECFAQRYCQLNPNIFTNT 81
           E FAQRYCQ N  +F +T
Sbjct: 166 EAFAQRYCQCNTGVFQST 183

Promotes guanine-nucleotide exchange on ARF6. Promotes the activation of ARF6 through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q9QX11|CYH1_MOUSE Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=2 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/78 (67%), Positives = 59/78 (75%), Gaps = 5/78 (6%)

Query: 4   AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
           AI   L  RD+ +I      VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 111 AIGDYLGERDEFSI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 165

Query: 64  ECFAQRYCQLNPNIFTNT 81
           E FAQRYCQ N  +F +T
Sbjct: 166 EAFAQRYCQCNTGVFQST 183

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q15438|CYH1_HUMAN Cytohesin-1 OS=Homo sapiens GN=CYTH1 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 51/58 (87%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQ N  +F +T
Sbjct: 126 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQST 183

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Homo sapiens (taxid: 9606)

>sp|Q76MZ1|CYH1_CHLAE Cytohesin-1 OS=Chlorocebus aethiops GN=CYTH1 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 51/58 (87%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQ N  +F +T
Sbjct: 126 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQST 183

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Chlorocebus aethiops (taxid: 9534)

>sp|P97696|CYH3_RAT Cytohesin-3 OS=Rattus norvegicus GN=Cyth3 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 54/70 (77%), Gaps = 5/70 (7%)

Query: 12  RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71
           RDD  I      VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDRMME FA RYC
Sbjct: 123 RDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYC 177

Query: 72  QLNPNIFTNT 81
             NP +F +T
Sbjct: 178 LCNPGVFQST 187

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
350424580	414	PREDICTED: cytohesin-1-like [Bombus impa	0.630	0.140	0.982	8e-29
307167289	441	Cytohesin-1 [Camponotus floridanus]	0.630	0.131	0.982	8e-29
340716422	418	PREDICTED: cytohesin-1-like isoform 2 [B	0.630	0.138	0.982	1e-28
380019731	434	PREDICTED: cytohesin-1-like isoform 1 [A	0.630	0.133	0.982	1e-28
383860355	434	PREDICTED: cytohesin-1-like [Megachile r	0.630	0.133	0.982	1e-28
340716420	434	PREDICTED: cytohesin-1-like isoform 1 [B	0.630	0.133	0.982	2e-28
307206275	324	Cytohesin-1 [Harpegnathos saltator]	0.630	0.179	0.982	5e-28
332028459	333	Cytohesin-1 [Acromyrmex echinatior]	0.630	0.174	0.982	6e-28
322779022	459	hypothetical protein SINV_00406 [Solenop	0.630	0.126	0.982	7e-28
328793286	269	PREDICTED: cytohesin-1-like, partial [Ap	0.630	0.215	0.982	1e-27

>gi|350424580|ref|XP_003493843.1| PREDICTED: cytohesin-1-like [Bombus impatiens]

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 142 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 199

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167289|gb|EFN60957.1| Cytohesin-1 [Camponotus floridanus]

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 169 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 226

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716422|ref|XP_003396697.1| PREDICTED: cytohesin-1-like isoform 2 [Bombus terrestris] gi|380019733|ref|XP_003693757.1| PREDICTED: cytohesin-1-like isoform 2 [Apis florea]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 146 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 203

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019731|ref|XP_003693756.1| PREDICTED: cytohesin-1-like isoform 1 [Apis florea]

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 162 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 219

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860355|ref|XP_003705656.1| PREDICTED: cytohesin-1-like [Megachile rotundata]

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 162 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 219

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716420|ref|XP_003396696.1| PREDICTED: cytohesin-1-like isoform 1 [Bombus terrestris]

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 162 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 219

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206275|gb|EFN84340.1| Cytohesin-1 [Harpegnathos saltator]

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 52  VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 109

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028459|gb|EGI68502.1| Cytohesin-1 [Acromyrmex echinatior]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 61  VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779022|gb|EFZ09421.1| hypothetical protein SINV_00406 [Solenopsis invicta]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 143 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 200

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793286|ref|XP_001123194.2| PREDICTED: cytohesin-1-like, partial [Apis mellifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           VLRAFV+LHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT
Sbjct: 162 VLRAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 219

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
FB|FBgn0086779	727	step "steppke" [Drosophila mel	0.630	0.079	0.913	3.4e-23
ZFIN|ZDB-GENE-030131-657	399	cyth1a "cytohesin 1a" [Danio r	0.793	0.182	0.705	3.7e-22
ZFIN|ZDB-GENE-100921-55	416	si:dkey-283b15.4 "si:dkey-283b	0.793	0.175	0.705	5.1e-22
UNIPROTKB|F1N830	320	CYTH1 "Uncharacterized protein	0.630	0.181	0.827	5.5e-22
UNIPROTKB|F1P5N1	327	CYTH1 "Uncharacterized protein	0.630	0.177	0.827	5.5e-22
MGI|MGI:1334255	400	Cyth2 "cytohesin 2" [Mus muscu	0.641	0.147	0.830	6.6e-22
RGD|620398	400	Cyth2 "cytohesin 2" [Rattus no	0.641	0.147	0.830	6.6e-22
UNIPROTKB|P63035	400	Cyth2 "Cytohesin-2" [Rattus no	0.641	0.147	0.830	6.6e-22
ZFIN|ZDB-GENE-030131-4311	399	cyth1b "cytohesin 1b" [Danio r	0.630	0.145	0.827	8.4e-22
UNIPROTKB|F8W8E2	254	CYTH2 "Cytohesin-2" [Homo sapi	0.641	0.232	0.813	9e-22

FB|FBgn0086779 step "steppke" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 3.4e-23, P = 3.4e-23
 Identities = 53/58 (91%), Positives = 56/58 (96%)

Query:    24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             VL+AFV LHDFT+LILVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQLNP+IFTNT
Sbjct:   459 VLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNT 516

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=ISS;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

ZFIN|ZDB-GENE-030131-657 cyth1a "cytohesin 1a" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 55/78 (70%), Positives = 59/78 (75%)

Query:     4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
             AI   L  RDD  I      VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct:   113 AIGDYLGERDDFNI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 167

Query:    64 ECFAQRYCQLNPNIFTNT 81
             E FAQRYCQ NP +F +T
Sbjct:   168 EAFAQRYCQCNPGVFQST 185

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0050790 "regulation of catalytic activity" evidence=IBA

ZFIN|ZDB-GENE-100921-55 si:dkey-283b15.4 "si:dkey-283b15.4" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 5.1e-22, P = 5.1e-22
 Identities = 55/78 (70%), Positives = 59/78 (75%)

Query:     4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
             AI   L  RDD  I      VL+AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct:   127 AIGDYLGERDDFNI-----KVLQAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 181

Query:    64 ECFAQRYCQLNPNIFTNT 81
             E FAQRYC  NP +F +T
Sbjct:   182 EAFAQRYCHCNPGVFQST 199

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F1N830 CYTH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 48/58 (82%), Positives = 52/58 (89%)

Query:    24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQ NP +F +T
Sbjct:   119 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNPGVFQST 176

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

UNIPROTKB|F1P5N1 CYTH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 48/58 (82%), Positives = 52/58 (89%)

Query:    24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQ NP +F +T
Sbjct:   126 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNPGVFQST 183

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

MGI|MGI:1334255 Cyth2 "cytohesin 2" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 6.6e-22, P = 6.6e-22
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query:    23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             SVL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct:   124 SVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IBA

GO:0016020 "membrane" evidence=ISO

GO:0030155 "regulation of cell adhesion" evidence=ISO;IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

RGD|620398 Cyth2 "cytohesin 2" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 6.6e-22, P = 6.6e-22
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query:    23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             SVL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct:   124 SVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005886 "plasma membrane" evidence=ISO;ISS;IBA

GO:0016020 "membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0016358 "dendrite development" evidence=TAS

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|P63035 Cyth2 "Cytohesin-2" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 6.6e-22, P = 6.6e-22
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query:    23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             SVL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct:   124 SVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 182

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030131-4311 cyth1b "cytohesin 1b" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 8.4e-22, P = 8.4e-22
 Identities = 48/58 (82%), Positives = 52/58 (89%)

Query:    24 VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYCQ NP +F +T
Sbjct:   128 VLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNPGVFQST 185

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F8W8E2 CYTH2 "Cytohesin-2" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query:    23 SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
             +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct:   146 AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 204

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZX8	BIG2_ARATH	No assigned EC number	0.5312	0.6956	0.0356	yes	N/A
P63034	CYH2_MOUSE	No assigned EC number	0.8305	0.6413	0.1475	yes	N/A
P63035	CYH2_RAT	No assigned EC number	0.8305	0.6413	0.1475	yes	N/A
P11075	SEC7_YEAST	No assigned EC number	0.5522	0.6739	0.0308	yes	N/A
Q2KI41	CYH2_BOVIN	No assigned EC number	0.8135	0.6413	0.1439	yes	N/A
Q99418	CYH2_HUMAN	No assigned EC number	0.8135	0.6413	0.1475	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	92
cd00171	185	cd00171, Sec7, Sec7 domain; Domain named after the	3e-28
pfam01369	188	pfam01369, Sec7, Sec7 domain	8e-27
smart00222	189	smart00222, Sec7, Sec7 domain	1e-26
COG5307	1024	COG5307, COG5307, SEC7 domain proteins [General fu	7e-20
PLN03076	1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	1e-19

>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S

 Score =   99 bits (250), Expect = 3e-28
 Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 3/65 (4%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTN-- 80
            VL  FVDL DF+ L L +ALR+FL SFRLPGEAQKIDR++E F++RYC+ NP IF++  
Sbjct: 65  LVLHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSA 124

Query: 81  -TAHT 84
             A+T
Sbjct: 125 DAAYT 129

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity. Length = 185

>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain

 Score = 96.5 bits (241), Expect = 8e-27
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
           VL+ +VDL DF  L L +ALR FL SFRLPGEAQKIDR++E F++RY + NP+    +A
Sbjct: 69  VLKEYVDLFDFKGLPLDEALRLFLSSFRLPGEAQKIDRILEAFSERYYECNPSTVFKSA 127

The Sec7 domain is a guanine-nucleotide-exchange-factor (GEF) for the pfam00025 family. Length = 188

>gnl|CDD|214569 smart00222, Sec7, Sec7 domain

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 4/65 (6%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIF----T 79
           VL AFVDL DF+   L QALR+FL SFRLPGEAQKIDR++E F+ RYC+ NP +F     
Sbjct: 69  VLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPGVFSKANA 128

Query: 80  NTAHT 84
           + A+T
Sbjct: 129 DAAYT 133

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors). Length = 189

>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only]

 Score = 82.1 bits (203), Expect = 7e-20
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
           +VLR F+ L DF  L + +ALR+ L SFRLPGEAQ+IDR++E F+ +Y   NP  F++  
Sbjct: 332 AVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKP 391

Query: 83  HT 84
            +
Sbjct: 392 DS 393

Length = 1024

>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFT--NT 81
           V+ A+VD  DF  +   +A+R FL  FRLPGEAQKIDR+ME FA+RYC+ NP  F+  +T
Sbjct: 680 VMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADT 739

Query: 82  AH 83
           A+
Sbjct: 740 AY 741

Length = 1780

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
cd00171	185	Sec7 Sec7 domain; Domain named after the S. cerevi	99.96
PF01369	190	Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do	99.96
smart00222	187	Sec7 Sec7 domain. Domain named after the S. cerevi	99.96
KOG0929|consensus	1514		99.95
KOG0930|consensus	395		99.95
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	99.94
COG5307	1024	SEC7 domain proteins [General function prediction	99.94
KOG0928|consensus	1386		99.93
KOG0931|consensus	627		99.91
KOG0932|consensus	774		99.81

>cd00171 Sec7 Sec7 domain; Domain named after the S

Probab=99.96  E-value=1.2e-30  Score=187.14  Aligned_cols=84  Identities=49%  Similarity=0.716  Sum_probs=79.5

Q ss_pred             chhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCC-C
Q psy17823          2 PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFT-N   80 (92)
Q Consensus         2 ~~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~-s   80 (92)
                      +-+||+|||+.++++.     +||++|++.|||+|+++|+|||.||++|+||||+|+|||||++||++|++|||+.+. |
T Consensus        49 k~~ig~~L~~~~~~~~-----~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~  123 (185)
T cd00171          49 KKAIGEYLGENNEFNS-----LVLHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSS  123 (185)
T ss_pred             HHHHHHHHcCCchHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            4589999999988776     699999999999999999999999999999999999999999999999999999887 9


Q ss_pred             CCeEEEEeee
Q psy17823         81 TAHTHRLKGH   90 (92)
Q Consensus        81 ~D~vyiLay~   90 (92)
                      +|+||+|||+
T Consensus       124 ~d~v~~l~~s  133 (185)
T cd00171         124 ADAAYTLAYS  133 (185)
T ss_pred             hhHHHHHHHH
Confidence            9999999985

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.

>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []

Probab=99.96  E-value=9.9e-31  Score=187.51  Aligned_cols=83  Identities=39%  Similarity=0.606  Sum_probs=75.8

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC--CCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN--IFTN   80 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~--~f~s   80 (92)
                      -+||+|||+.++++.     +||++|++.|||+|+++++|||.||++|+||||+|+|||||++||++|++|||+  .|.|
T Consensus        54 ~~ige~Lg~~~~~n~-----~vL~~y~~~fdf~~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~  128 (190)
T PF01369_consen   54 KKIGEYLGKDNPFNR-----DVLKEYISLFDFSGMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKS  128 (190)
T ss_dssp             HHHHHHHTSSSHHHH-----HHHHHHHHTSS-TTS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSS
T ss_pred             HHHHHHHhccchHHH-----HHHHHHHHHcCCcCccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCccccccc
Confidence            478999999888876     699999999999999999999999999999999999999999999999999996  7999


Q ss_pred             CCeEEEEeee
Q psy17823         81 TAHTHRLKGH   90 (92)
Q Consensus        81 ~D~vyiLay~   90 (92)
                      +|+||+|+|+
T Consensus       129 ~d~v~~l~~s  138 (190)
T PF01369_consen  129 PDTVYILAYS  138 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HhHHHHHHHH
Confidence            9999999985

It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....

>smart00222 Sec7 Sec7 domain

Probab=99.96  E-value=7.3e-30  Score=182.96  Aligned_cols=83  Identities=52%  Similarity=0.727  Sum_probs=78.7

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCC--C
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFT--N   80 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~--s   80 (92)
                      -+||+|||+.++++.     +||++|++.|||+|+++|+|||.||.+|+||||+|+|||||++||++|++|||+.+.  |
T Consensus        51 ~~ig~~l~~~~~~~~-----~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~  125 (187)
T smart00222       51 KAIGDYLGEHDEFNR-----LVLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLN  125 (187)
T ss_pred             HHHHHHHcCCChHHH-----HHHHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence            479999999888876     699999999999999999999999999999999999999999999999999999877  9


Q ss_pred             CCeEEEEeee
Q psy17823         81 TAHTHRLKGH   90 (92)
Q Consensus        81 ~D~vyiLay~   90 (92)
                      +|+||+|||+
T Consensus       126 ~d~~y~l~~s  135 (187)
T smart00222      126 ADAAYTLAYS  135 (187)
T ss_pred             hhHHHHHHHH
Confidence            9999999985

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).

>KOG0929|consensus

Probab=99.95  E-value=3e-29  Score=218.57  Aligned_cols=84  Identities=48%  Similarity=0.732  Sum_probs=81.0

Q ss_pred             chhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC-CCCC
Q psy17823          2 PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN-IFTN   80 (92)
Q Consensus         2 ~~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~-~f~s   80 (92)
                      +..+|.|||+.|++++.     ||++|++.|||+++++++|||.||..|+||||+|+|||+|++||+|||+|||+ +|.|
T Consensus       561 kt~igdyLGe~d~~~~~-----VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFss  635 (1514)
T KOG0929|consen  561 KTILGDYLGEDDDFNKA-----VMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSS  635 (1514)
T ss_pred             HHHHHHHhcCCcchhHH-----HHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence            35789999999999984     99999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCeEEEEeee
Q psy17823         81 TAHTHRLKGH   90 (92)
Q Consensus        81 ~D~vyiLay~   90 (92)
                      +|+||+||||
T Consensus       636 ADtaYVLAfS  645 (1514)
T KOG0929|consen  636 ADTAYVLAFS  645 (1514)
T ss_pred             ccchHHHHHH
Confidence            9999999996

>KOG0930|consensus

Probab=99.95  E-value=2.4e-28  Score=187.32  Aligned_cols=83  Identities=65%  Similarity=0.937  Sum_probs=80.9

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA   82 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D   82 (92)
                      -|||+|||+++++++     +||++|+++..|.++++.+|||+||-+|+||||+|+|||+||+||++||-|||.+|.|.|
T Consensus       109 taIG~yLGer~~~nl-----~vL~aFv~~Hef~dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstD  183 (395)
T KOG0930|consen  109 TAIGDYLGERDEFNL-----QVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTD  183 (395)
T ss_pred             hhHhhhhccCchhHH-----HHHHHHHHHHHhccchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCc
Confidence            389999999999999     599999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      +||+|+|+
T Consensus       184 tcyvlsfs  191 (395)
T KOG0930|consen  184 TCYVLSFA  191 (395)
T ss_pred             eeeeeeeh
Confidence            99999996

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=99.94  E-value=5.3e-28  Score=214.43  Aligned_cols=83  Identities=45%  Similarity=0.698  Sum_probs=79.8

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA   82 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D   82 (92)
                      -+||+|||+++++++     +||++|++.|||+|+++|+|||.||.+|+||||+|+||||||+||+||++|||+.|.|+|
T Consensus       664 ~~iGeyLg~~~~~~~-----~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D  738 (1780)
T PLN03076        664 TLIGDYLGEREDLSL-----KVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSAD  738 (1780)
T ss_pred             HHHHHHHcCCChHHH-----HHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHH
Confidence            479999999998887     599999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      ++|+|||+
T Consensus       739 ~~yvLays  746 (1780)
T PLN03076        739 TAYVLAYS  746 (1780)
T ss_pred             HHHHHHHH
Confidence            99999995

>COG5307 SEC7 domain proteins [General function prediction only]

Probab=99.94  E-value=4.4e-27  Score=201.06  Aligned_cols=82  Identities=43%  Similarity=0.667  Sum_probs=78.4

Q ss_pred             hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCC-C
Q psy17823          4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT-A   82 (92)
Q Consensus         4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~-D   82 (92)
                      .+|.|||+.+.+|+     .||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||.+|++|||+.+.++ |
T Consensus       318 ~lg~~L~~~~~kn~-----~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D  392 (1024)
T COG5307         318 KLGLYLGTDDDKNN-----AVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPD  392 (1024)
T ss_pred             HHHHHhcCCchhHH-----HHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccc
Confidence            58999999988887     59999999999999999999999999999999999999999999999999999988877 9


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      +|||||||
T Consensus       393 ~vyiLafS  400 (1024)
T COG5307         393 SVYILAFS  400 (1024)
T ss_pred             eeehhHHH
Confidence            99999996

>KOG0928|consensus

Probab=99.93  E-value=2.5e-26  Score=198.36  Aligned_cols=85  Identities=41%  Similarity=0.552  Sum_probs=77.2

Q ss_pred             hhhhcCCCchhhhhhH-----HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCC-CCCC
Q psy17823          6 SFSLRFRDDKTIAVTV-----PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNP-NIFT   79 (92)
Q Consensus         6 g~~lg~~d~~~i~~~~-----~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np-~~f~   79 (92)
                      -+|.+..||+.||+|+     .+||++|++.|||.||++|+|||.||.+||||||||+|+||||+||++|+++|+ ++|.
T Consensus       555 fr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~  634 (1386)
T KOG0928|consen  555 FRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFA  634 (1386)
T ss_pred             HHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3455566666666666     689999999999999999999999999999999999999999999999999887 8999


Q ss_pred             CCCeEEEEeee
Q psy17823         80 NTAHTHRLKGH   90 (92)
Q Consensus        80 s~D~vyiLay~   90 (92)
                      ++|+|++|||+
T Consensus       635 ~kDavFvLsYS  645 (1386)
T KOG0928|consen  635 DKDAVFVLSYS  645 (1386)
T ss_pred             ccchhhhhhhh
Confidence            99999999996

>KOG0931|consensus

Probab=99.91  E-value=1.7e-25  Score=179.42  Aligned_cols=82  Identities=39%  Similarity=0.583  Sum_probs=76.6

Q ss_pred             hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCC---CCC
Q psy17823          4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNI---FTN   80 (92)
Q Consensus         4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~---f~s   80 (92)
                      -||||||...+-    |+++||+++++.+||++|.+|+|||.|...+++|||+|+|||+||+||+|||.|||.+   |++
T Consensus       246 MIGEflGn~~kq----fnrdVLdcvvdemDfssmelDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrn  321 (627)
T KOG0931|consen  246 MIGEFLGNRQKQ----FNRDVLDCVVDEMDFSSMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRN  321 (627)
T ss_pred             HHHHHhccccch----hhhHHHHHHHhhhccccchHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccC
Confidence            389999998553    5589999999999999999999999999999999999999999999999999999974   999


Q ss_pred             CCeEEEEee
Q psy17823         81 TAHTHRLKG   89 (92)
Q Consensus        81 ~D~vyiLay   89 (92)
                      +|+||||||
T Consensus       322 pDTIfiLaF  330 (627)
T KOG0931|consen  322 PDTIFILAF  330 (627)
T ss_pred             CCeehHHHH
Confidence            999999997

>KOG0932|consensus

Probab=99.81  E-value=2e-20  Score=153.01  Aligned_cols=80  Identities=31%  Similarity=0.547  Sum_probs=76.0

Q ss_pred             hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCCe
Q psy17823          4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH   83 (92)
Q Consensus         4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D~   83 (92)
                      -++++||+.+++.-     .|+.+|+++|+|+|++||.|||.||+.+.|-||+|.-+|||..||+||++|||+.|.|.|.
T Consensus       324 dVA~~LgknNeFS~-----lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~~CNP~~~~S~Dg  398 (774)
T KOG0932|consen  324 DVARHLGKNNEFSR-----LVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYFQCNPDIFDSEDG  398 (774)
T ss_pred             HHHHHhcccchHHH-----HHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhccCccccccccc
Confidence            37889999999874     6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy17823         84 THRLK   88 (92)
Q Consensus        84 vyiLa   88 (92)
                      ||+|+
T Consensus       399 vHtLT  403 (774)
T KOG0932|consen  399 VHTLT  403 (774)
T ss_pred             hhHHH
Confidence            99874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	92
1r8m_E	203	Sec7 Domain Of The Arf Exchange Factor Arno With Br		6e-24
1r8q_E	203	Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A		8e-24
1pbv_A	195	Sec7 Domain Of The Exchange Factor Arno Length = 19		9e-24
1r8s_E	203	Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C		3e-23
1bc9_A	200	Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average		4e-23
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		4e-23
4a4p_A	192	Crystal Structure Of The Sec7 Domain From Human Cyt		5e-23
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		2e-21
3ltl_A	211	Crystal Structure Of Human Big1 Sec7 Domain Length		5e-13
1xt0_B	203	The Structure Of N-Terminal Sec7 Domain Of Ralf Len		3e-11
1xsz_A	356	The Structure Of Ralf Length = 356		1e-10
3l8n_A	202	Crystal Structure Of A Domain Of Brefeldin A-Inhibi		2e-10
1re0_B	221	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		9e-09
1ku1_A	230	Crystal Structure Of The Sec7 Domain Of Yeast Gea2		4e-08

>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 75  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGVFQST 133

>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 75  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 133

>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195

Iteration: 1
 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPGEAQKIDRMME FAQRYC  NP +F +T
Sbjct: 73  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 131

>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT 81
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPG+AQKIDRMME FAQRYC  NP +F +T
Sbjct: 75  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQST 133

>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 4   AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
           AI   L  RD+  I      VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 55  AIGDYLGERDEFNI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 109
Query: 64  ECFAQRYCQLNPNIFTNT 81
           E FAQRYCQ N  +F +T
Sbjct: 110 EAFAQRYCQCNNGVFQST 127

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 54/70 (77%), Gaps = 5/70 (7%)
Query: 12  RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71
           RDD  I      VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDRMME FA RYC
Sbjct: 71  RDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYC 125
Query: 72  QLNPNIFTNT 81
             NP +F +T
Sbjct: 126 LCNPGVFQST 135

>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Query: 4   AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMM 63
           AI   L  RD+  I      VL AFV+LH+FTDL LVQALRQFLWSFRLPGEAQKIDRMM
Sbjct: 55  AIGDYLGERDEFNI-----QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMM 109
Query: 64  ECFAQRYCQLNPNIFTNT 81
           E FAQRYCQ N  +F +T
Sbjct: 110 EAFAQRYCQCNNGVFQST 127

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 52/70 (74%), Gaps = 5/70 (7%)
Query: 12  RDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYC 71
           RDD  I      VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDR  E FA RYC
Sbjct: 71  RDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYC 125
Query: 72  QLNPNIFTNT 81
             NP +F +T
Sbjct: 126 LCNPGVFQST 135

>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 37/52 (71%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLN 74
            V+ A+VD HDF+    V ALR FL  FRLPGEAQKIDR+ME FA RY + N
Sbjct: 81  EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECN 132

>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
           VL+AF    +F     V+ LR FL +F+LPGEAQKIDR+++ F+  Y Q NP++ +N   
Sbjct: 74  VLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 84  THRL 87
            + L
Sbjct: 134 AYLL 137

>pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTN 80
           VL+AF    +F     V+ LR FL +F+LPGEAQKIDR+++ F+  Y Q NP++ +N
Sbjct: 74  VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSN 130

>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 34/52 (65%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLN 74
            V  A+VD  DF +   V ALR FL  FRLPGEAQKIDR+ E FA RY + N
Sbjct: 72  EVXYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECN 123

>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 221

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN 76
           S+L+ F+DL DF  L + +A+R  L  FRLPGE+Q+I+R++E F+ +Y     N
Sbjct: 71  SLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSN 124

>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2 Length = 230

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQ 72
           S+L  ++ L DF+ L + +A+R  L  FRLPGE+Q+I+R++E F+  YC+
Sbjct: 86  SLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	1e-25
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	1e-25
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	3e-25
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	1e-24
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	1e-23

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203

 Score = 93.2 bits (232), Expect = 1e-25
 Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 2/64 (3%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTN-- 80
           +VL AFVDLH+FTDL LVQALRQFLWSFRLPG+AQKIDRMME FAQRYC  NP +F +  
Sbjct: 75  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTD 134

Query: 81  TAHT 84
           T + 
Sbjct: 135 TCYV 138

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211

 Score = 93.3 bits (232), Expect = 1e-25
 Identities = 34/67 (50%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN--IFTN 80
            V+ A+VD HDF+    V ALR FL  FRLPGEAQKIDR+ME FA RY + N    +F +
Sbjct: 81  EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFAS 140

Query: 81  TAHTHRL 87
               + L
Sbjct: 141 ADTAYVL 147

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score = 95.1 bits (236), Expect = 3e-25
 Identities = 46/65 (70%), Positives = 52/65 (80%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
            VL+AFV+LH+F DL LVQALRQFLWSFRLPGEAQKIDRMME FA RYC  NP +F +T 
Sbjct: 77  KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTD 136

Query: 83  HTHRL 87
             + L
Sbjct: 137 TCYVL 141

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230

 Score = 91.4 bits (227), Expect = 1e-24
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN 76
           S+L  ++ L DF+ L + +A+R  L  FRLPGE+Q+I+R++E F+  YC+    
Sbjct: 86  SLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDY 139

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356

 Score = 90.9 bits (225), Expect = 1e-23
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
            VL+AF    +F     V+ LR FL +F+LPGEAQKIDR+++ F+  Y Q NP++ +N  
Sbjct: 73  QVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNAD 132

Query: 83  HTHRL 87
             + L
Sbjct: 133 AAYLL 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	100.0
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	99.97
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	99.97
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	99.96
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.96

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A

Probab=100.00  E-value=4.1e-34  Score=207.63  Aligned_cols=83  Identities=63%  Similarity=0.935  Sum_probs=79.8

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA   82 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D   82 (92)
                      -+||+|||+.++++.     +||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||+|||+|||++|.|+|
T Consensus        60 ~~igeyLg~~~~~n~-----~vl~~y~~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D  134 (203)
T 1r8s_E           60 TAIGDYLGEREELNL-----AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTD  134 (203)
T ss_dssp             HHHHHHHTCCSHHHH-----HHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHH
T ss_pred             HHHHHHHhccchHHH-----HHHHHHHHhcCCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcc
Confidence            479999999998887     599999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      +||+|||+
T Consensus       135 ~~~vLayS  142 (203)
T 1r8s_E          135 TCYVLSYS  142 (203)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999996

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A

Probab=99.97  E-value=4.3e-33  Score=203.37  Aligned_cols=83  Identities=43%  Similarity=0.574  Sum_probs=78.9

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC--CCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN--IFTN   80 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~--~f~s   80 (92)
                      -+||+|||+.++++.     +||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||+||++|||+  +|.|
T Consensus        66 ~~igeyLg~~~~fn~-----~vL~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s  140 (211)
T 3ltl_A           66 TQVGEFLGDNDKFNK-----EVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFAS  140 (211)
T ss_dssp             HHHHHHHTCCSHHHH-----HHHHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSS
T ss_pred             HHHHHHHhccchhHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCC
Confidence            368999999998876     699999999999999999999999999999999999999999999999999997  6999


Q ss_pred             CCeEEEEeee
Q psy17823         81 TAHTHRLKGH   90 (92)
Q Consensus        81 ~D~vyiLay~   90 (92)
                      +|+||+|||+
T Consensus       141 ~D~~~iLayS  150 (211)
T 3ltl_A          141 ADTAYVLAYS  150 (211)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B

Probab=99.97  E-value=8.3e-32  Score=208.72  Aligned_cols=82  Identities=37%  Similarity=0.579  Sum_probs=78.6

Q ss_pred             hhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCCe
Q psy17823          4 AISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH   83 (92)
Q Consensus         4 ~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D~   83 (92)
                      +||+|||+.++++.     +||++|+++|||+|+++|+|||.||.+|+||||+|+|||||++||+|||+|||+.|.|+|+
T Consensus        59 ~IGeyLg~~~~~n~-----~VL~~yv~~fdF~g~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~  133 (356)
T 1xsz_A           59 AVGDYLSSPEAENQ-----QVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA  133 (356)
T ss_dssp             HHHHHHTCCSHHHH-----HHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHH
T ss_pred             HHHHHHcCCchHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCccCChhH
Confidence            68899999888776     6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeee
Q psy17823         84 THRLKGH   90 (92)
Q Consensus        84 vyiLay~   90 (92)
                      ||+|||+
T Consensus       134 ~yvLayS  140 (356)
T 1xsz_A          134 AYLLAFQ  140 (356)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999996

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*

Probab=99.96  E-value=3.3e-31  Score=195.35  Aligned_cols=79  Identities=33%  Similarity=0.599  Sum_probs=70.3

Q ss_pred             CCchhhhhhH-----HHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCC----------
Q psy17823         12 RDDKTIAVTV-----PSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPN----------   76 (92)
Q Consensus        12 ~d~~~i~~~~-----~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~----------   76 (92)
                      .+++.||+|+     .+||++|+++|||+|+++|+|||.||.+|+||||+|+|||||++||+||++|||+          
T Consensus        70 L~k~~iGeyLg~~~n~~vL~~yv~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~  149 (230)
T 1ku1_A           70 MNKKTIGLLLCHPDKVSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAE  149 (230)
T ss_dssp             SCHHHHHHHHTCGGGHHHHHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCT
T ss_pred             cCHHHHHHHHcCccHHHHHHHHHhhccCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccc
Confidence            3444444444     5799999999999999999999999999999999999999999999999999973          


Q ss_pred             -----CCCCCCeEEEEeee
Q psy17823         77 -----IFTNTAHTHRLKGH   90 (92)
Q Consensus        77 -----~f~s~D~vyiLay~   90 (92)
                           +|.|+|+||+|||+
T Consensus       150 ~~~~~~f~s~D~vyvLayS  168 (230)
T 1ku1_A          150 DDISTVQPDADSVFILSYS  168 (230)
T ss_dssp             TCGGGCCCCHHHHHHHHHH
T ss_pred             cccccccCCchHHHHHHHH
Confidence                 57899999999996

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.96  E-value=2.7e-31  Score=202.68  Aligned_cols=83  Identities=63%  Similarity=0.918  Sum_probs=79.9

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA   82 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D   82 (92)
                      -+||+|||+.++++.     +||++|++.|||+|+++|+|||.||++|+||||+|+|||||++||++|++|||++|.|+|
T Consensus        62 ~~ig~~l~~~~~~~~-----~vl~~~~~~~~f~~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d  136 (347)
T 2r09_A           62 TVIGDYLGERDDFNI-----KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTD  136 (347)
T ss_dssp             HHHHHHHHCCSHHHH-----HHHHHHHHTSCCTTCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHH
T ss_pred             HHHHHHhcCCCchHH-----HHHHHHHHhcCcCCCCHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCcccCChh
Confidence            479999999998887     599999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      +||+|+|+
T Consensus       137 ~~~~l~~s  144 (347)
T 2r09_A          137 TCYVLSFA  144 (347)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d1r8se_	187	a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s	3e-23
d1xsza1	197	a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio	1e-21
d1ku1a_	211	a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2	2e-19

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (212), Expect = 3e-23
 Identities = 48/64 (75%), Positives = 53/64 (82%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
           VL AFVDLH+FTDL LVQALRQFLWSFRLPG+AQKIDRMME FAQRYC  NP +F +T  
Sbjct: 64  VLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDT 123

Query: 84  THRL 87
            + L
Sbjct: 124 CYVL 127

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (201), Expect = 1e-21
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 24  VLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTAH 83
           VL+AF    +F     V+ LR FL +F+LPGEAQKIDR+++ F+  Y Q NP++ +N   
Sbjct: 72  VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 131

Query: 84  THRL 87
            + L
Sbjct: 132 AYLL 135

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (188), Expect = 2e-19
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 23  SVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA 82
           S+L  ++ L DF+ L + +A+R  L  FRLPGE+Q+I+R++E F+  YC+      +  +
Sbjct: 74  SLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKIS 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1xsza1	197	RalF, N-terminal domain {Legionella pneumophila [T	99.97
d1r8se_	187	Exchange factor ARNO {Human (Homo sapiens) [TaxId:	99.97
d1ku1a_	211	ARF guanine-exchange factor 2, Gea2 {Baker's yeast	99.96

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=3.5e-33  Score=199.96  Aligned_cols=83  Identities=36%  Similarity=0.556  Sum_probs=79.2

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNTA   82 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~D   82 (92)
                      -+||+|||++++++.     +||++|++.|||+|+++|+|||.||.+|+||||+|+|||||++||++|++|||+.|.|+|
T Consensus        56 ~~iGeyLg~~~~~n~-----~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~~Np~~~~~~d  130 (197)
T d1xsza1          56 EAVGDYLSSPEAENQ-----QVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNAD  130 (197)
T ss_dssp             HHHHHHHTCCSHHHH-----HHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHH
T ss_pred             HHHHHHHcCCchHHH-----HHHHHHHHhCCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHhCcCCCCCcc
Confidence            478999999888775     699999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeee
Q psy17823         83 HTHRLKGH   90 (92)
Q Consensus        83 ~vyiLay~   90 (92)
                      +||+|||+
T Consensus       131 ~v~~L~~s  138 (197)
T d1xsza1         131 AAYLLAFQ  138 (197)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=190.73  Aligned_cols=84  Identities=62%  Similarity=0.922  Sum_probs=80.0

Q ss_pred             chhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCCCCCCCC
Q psy17823          2 PFAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPNIFTNT   81 (92)
Q Consensus         2 ~~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np~~f~s~   81 (92)
                      +-+||+|||+.++++.     +||++|++.|||+|+++++|||.||++|+||||+|+|||||++||++|++|||++|.|+
T Consensus        47 k~~ige~Lg~~~~~~~-----~vl~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~  121 (187)
T d1r8se_          47 KTAIGDYLGEREELNL-----AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQST  121 (187)
T ss_dssp             HHHHHHHHTCCSHHHH-----HHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCH
T ss_pred             HHHHHHHHccccHHHH-----HHHHHHHHhcCcCCCcHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence            3579999999988776     69999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeee
Q psy17823         82 AHTHRLKGH   90 (92)
Q Consensus        82 D~vyiLay~   90 (92)
                      |+||+|||+
T Consensus       122 d~v~~l~~s  130 (187)
T d1r8se_         122 DTCYVLSYS  130 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999985

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.7e-31  Score=188.79  Aligned_cols=81  Identities=32%  Similarity=0.566  Sum_probs=72.5

Q ss_pred             hhhhhhhcCCCchhhhhhHHHHHHHHHhcCCCCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhhCC-------
Q psy17823          3 FAISFSLRFRDDKTIAVTVPSVLRAFVDLHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNP-------   75 (92)
Q Consensus         3 ~~ig~~lg~~d~~~i~~~~~~VL~~y~~~fdf~~~~ld~ALR~fl~~~~LpgEsQ~IdRile~Fs~~y~~~Np-------   75 (92)
                      -+||+|||+.+  +     .+||++|+++|||+|+++|+|||.||++|+||||+|+|||||++||++|++|||       
T Consensus        61 ~~iGeyLg~~~--n-----~~vL~~y~~~fdf~~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~~N~~~~~~~~  133 (211)
T d1ku1a_          61 KTIGLLLCHPD--K-----VSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKIS  133 (211)
T ss_dssp             HHHHHHHTCGG--G-----HHHHHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCC
T ss_pred             HHHHHHHCCCc--h-----HHHHHHHHhccCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHhHHHHhcCCCCccccc
Confidence            35666666432  2     479999999999999999999999999999999999999999999999999998       


Q ss_pred             --------CCCCCCCeEEEEeee
Q psy17823         76 --------NIFTNTAHTHRLKGH   90 (92)
Q Consensus        76 --------~~f~s~D~vyiLay~   90 (92)
                              .+|.|+|++|+|||+
T Consensus       134 ~~~~~~~~~~f~s~d~~y~L~ys  156 (211)
T d1ku1a_         134 DNAEDDISTVQPDADSVFILSYS  156 (211)
T ss_dssp             SCCTTCGGGCCCCHHHHHHHHHH
T ss_pred             ccccccccccccCccHHHHHHHH
Confidence                    368999999999996