Psyllid ID: psy17824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS
Secondary Structure (PSIPRED)
cccccccEEEEEEEccEEcEEEEEEEccccccccHHHHHHHHHcccccccccccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEccHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEccccccEEEEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mklirprcyfdveisdiplgrIVFELysdicpitcENFRALCtgekgigkttgknlhyLNIVFHRVVKGFMiqsgdfsvgngtggesiyggtfedenfelkhdepfLLSManrgkdtngsqffittqpaphldgvhVVFGHVVSgqnvvshienlpvdkmsrplqdvrVVKCNELVLKSKLKAkekrkasptsassdesdkeeeekeegeqtdSEKEAKKRKKHkkdkkkkkKKSKYEEEeekeegeqtdSEKEAKKRKKHkkdkkkrkkks
Flexible Loop (DISEMBL)
mklirprcyfdveisdiplGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIenlpvdkmsrplqdvrvVKCNELVlksklkakekrkasptsassdesdkeeeekeegeqtdsekeakkrkkhkkdkkkkkkkskyeeeeekeegeqtdsekeakkrkkhkkdkkkrkkks
Low Complexity Region (SEG)
MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCtgekgigkttgkNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDgvhvvfghvvSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVlksklkakekrkasPTsassdesdkeeeekeegeqtdsekeakkrkkhkkdkkkkkkkskyeeeeekeegeqtdsekeAkkrkkhkkdkkkrkkkS
Disordered region (IsUnstruct)
***IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMA******NGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVL***********************************************************************************************
Disordered Region (DISOPRED)
***IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVS***************DVRVVKCNEL*************************************************************************************************
Disordered Region (DISEMBL)
MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKL*******************************************************************************************
Disordered Region (DISPRO)
***IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKE********************KEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGE*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKKRKKHKKDKKKRKKKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
O55035	752	Peptidyl-prolyl cis-trans	yes	N/A	0.647	0.234	0.681	4e-75
A2AR02	752	Peptidyl-prolyl cis-trans	yes	N/A	0.647	0.234	0.676	4e-75
Q13427	754	Peptidyl-prolyl cis-trans	yes	N/A	0.647	0.233	0.676	5e-75
P30414	1462	NK-tumor recognition prot	no	N/A	0.691	0.128	0.675	2e-74
P30415	1453	NK-tumor recognition prot	no	N/A	0.691	0.129	0.670	2e-73
Q27450	843	Peptidyl-prolyl cis-trans	N/A	N/A	0.647	0.208	0.619	1e-64
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	N/A	0.753	0.546	0.567	1e-63
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	N/A	0.625	0.456	0.633	6e-62
P0C1I9	338	Peptidyl-prolyl cis-trans	N/A	N/A	0.720	0.579	0.58	9e-62
Q4HXF6	372	Peptidyl-prolyl cis-trans	yes	N/A	0.669	0.489	0.601	1e-61

>sp|O55035|PPIG_RAT Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LCTGEKG GK+T K LHY +
Sbjct: 3   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 63  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           QFFITT+P PHLDG HVVFG V+SGQ VV  IEN   D  S+P  +VR++ C ELV
Sbjct: 123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELV 178

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. May play an important role in the regulation of pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|A2AR02|PPIG_MOUSE Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 143/176 (81%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LCTGEKG GK+T K LHY +
Sbjct: 3   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 63  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           QFFITT+P PHLDG HVVFG V+SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct: 123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. May play an important role in the regulation of pre-mRNA splicing.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13427|PPIG_HUMAN Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2

 Score =  281 bits (718), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 143/176 (81%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LCTGEKG GK+T K LHY +
Sbjct: 3   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 63  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           QFFITT+P PHLDG HVVFG V+SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct: 123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. May play an important role in the regulation of pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30414|NKTR_HUMAN NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/188 (67%), Positives = 145/188 (77%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           RP+C+FD+EI+  P+GRI+F+L+SDICP TC+NF  LC+GEKG+GKTTGK L Y    FH
Sbjct: 6   RPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 65

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RVVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD  FLLSMANRGK TNGSQFFI
Sbjct: 66  RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 125

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
           TT+PAPHLDGVHVVFG V+SG  V+  IENL  D  SRP  DVRV+ C  L  KS     
Sbjct: 126 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKSIKDVF 185

Query: 185 EKRKASPT 192
           EK++  PT
Sbjct: 186 EKKRKKPT 193

Component of a putative tumor-recognition complex. Involved in the function of NK cells.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30415|NKTR_MOUSE NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=4

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/188 (67%), Positives = 144/188 (76%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           RP+C+FD+EI+  P+GRI+F+L+SDICP TC+NF  LC+GEKG+GKTTGK L Y    FH
Sbjct: 6   RPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 65

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RVVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD  FLLSMANRGK TNGSQFFI
Sbjct: 66  RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 125

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
           TT+PAPHLDGVHVVFG V+SG  V+  IENL  D  SRP  DVRV+ C  L  K      
Sbjct: 126 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKLTKDVF 185

Query: 185 EKRKASPT 192
           EK++  PT
Sbjct: 186 EKKRKKPT 193

Component of a putative tumor-recognition complex. Involved in the function of NK cells.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q27450|CYP1_BRUMA Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 129/176 (73%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           R R + DV I     GRIV ELY+DI P TC NF  LCTG  G GK +GK LHY    FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           TT PAPHL+ +HVVFG VVSGQ VV+ IE L  +  +RPL DV ++ C ELV + K
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELVRRKK 181

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Brugia malayi (taxid: 6279)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/215 (56%), Positives = 144/215 (66%), Gaps = 10/215 (4%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           +K  R R +FD+ I     GRIVFELY+DI P T ENFRALCTGEKG+GK  GK LHY  
Sbjct: 7   VKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKL-GKPLHYKG 65

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
             FHRV+K FMIQ GDF+ GNGTGGESIYG  FEDENF+LKHD PFLLSMAN G  TNGS
Sbjct: 66  STFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGS 125

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFF+TT P PHLDG HVVFG V+SG++VV  IENL   +  +P +D  +  C EL   + 
Sbjct: 126 QFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKPTKDAVIADCGELSGDAA 184

Query: 181 LKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSE 215
           + A  K        ++D    E E+  E E TD +
Sbjct: 185 VSADTK--------TADAYGDEYEDFPEDEATDGQ 211

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  237 bits (605), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 129/172 (75%), Gaps = 2/172 (1%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           RPR +FD++I     GRI FEL++D+ P T ENFRALCTGEKG+GK  GK LH+   +FH
Sbjct: 6   RPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQ-GKPLHFKGSIFH 64

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF+  NGTGGESIYG  F DENFELKHD PFLLSMAN G  TNGSQFFI
Sbjct: 65  RVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFI 124

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           TT P PHLDG HVVFG V++G++VV  IEN+P  +  +P  DV + +C EL 
Sbjct: 125 TTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTIAECGELT 175

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I9|CYP11_RHIO9 Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp11 PE=3 SV=1

 Score =  236 bits (603), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 137/200 (68%), Gaps = 4/200 (2%)

Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
           +I PR +FD+++    +GRIV EL++D  P T ENFRALCTGEKGIGK +   LHY   +
Sbjct: 1   MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSI 60

Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++KGFM Q GDF+   G GGESIYG  F DE+F  KHD   LLSMANRG +T  SQF
Sbjct: 61  FHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQF 120

Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLK 182
           FITT+P PHLDG HVVFG VVSG NVV  +EN PVD   RPL +V +  C ELVLK    
Sbjct: 121 FITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGELVLKLPPG 180

Query: 183 AKEKRKASPTSASSDESDKE 202
           A  K+     SA SDES+ E
Sbjct: 181 ALLKK----ASAVSDESEDE 196

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4HXF6|PPID_GIBZE Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CPR6 PE=3 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           RPR YFD+ I    +GRI  ELY+D+ P T +NFR+LCTGEKGIGK+ GK LHY   VFH
Sbjct: 10  RPRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKS-GKPLHYKGSVFH 68

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF+ G+GTGGESIYG  F+DE F +KH++PFLLSMAN G +TNGSQFFI
Sbjct: 69  RVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFI 128

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
           TT P PHLDG HVVFG V++G++VV  IENL      RP ++  +V C EL   + L A 
Sbjct: 129 TTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELTGDAALAAD 188

Query: 185 EKR 187
            K+
Sbjct: 189 VKQ 191

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
383850407	578	PREDICTED: uncharacterized protein LOC10	0.676	0.318	0.777	1e-85
322778800	547	hypothetical protein SINV_06109 [Solenop	0.680	0.338	0.774	6e-85
350417107	565	PREDICTED: peptidyl-prolyl cis-trans iso	0.683	0.329	0.752	7e-85
340713178	565	PREDICTED: peptidyl-prolyl cis-trans iso	0.683	0.329	0.752	7e-85
193652624	548	PREDICTED: hypothetical protein LOC10016	0.716	0.355	0.734	2e-84
307202211	564	Peptidyl-prolyl cis-trans isomerase G [H	0.683	0.329	0.763	5e-84
332026905	556	NK-tumor recognition protein [Acromyrmex	0.691	0.338	0.761	5e-84
229608905	430	moca cyclophilin [Nasonia vitripennis]	0.639	0.404	0.781	2e-81
427787425	943	hypothetical protein [Rhipicephalus pulc	0.647	0.186	0.738	5e-81
195055829	912	GH17446 [Drosophila grimshawi] gi|193892	0.816	0.243	0.64	6e-81

>gi|383850407|ref|XP_003700787.1| PREDICTED: uncharacterized protein LOC100879476 [Megachile rotundata]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 160/184 (86%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M  + PR +FD+E+  +P+GRI+FEL++DICPITCENFRALCTGEKG+GKTT K LHY  
Sbjct: 14  MVNVNPRVFFDIEVGGLPMGRIIFELFADICPITCENFRALCTGEKGLGKTTSKPLHYKG 73

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
           IVFHRVVK FMIQ GDFSVGNGTGGESIYGGTF DENF +KH +PFLLSMANRG+DTNGS
Sbjct: 74  IVFHRVVKDFMIQGGDFSVGNGTGGESIYGGTFADENFIIKHSKPFLLSMANRGRDTNGS 133

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFFITTQPAPHLD VHVVFG VVSGQ +V+HIE LPVD+MSRPLQD +VV C ELVLK K
Sbjct: 134 QFFITTQPAPHLDNVHVVFGEVVSGQEIVTHIEGLPVDRMSRPLQDAKVVNCGELVLKVK 193

Query: 181 LKAK 184
            KAK
Sbjct: 194 SKAK 197

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778800|gb|EFZ09216.1| hypothetical protein SINV_06109 [Solenopsis invicta]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 144/186 (77%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +  R +FDVE+  +P+GRIVFEL+SD CPITCENFR LCTGEKG+GKTTGK LHY  IVF
Sbjct: 1   VNARVFFDVEVGGLPMGRIVFELFSDTCPITCENFRGLCTGEKGLGKTTGKPLHYKGIVF 60

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRVVK FMIQ GDFS+GNGTGGESIYGGTF DENF +KH++PFLLSMANRG+DTNGSQFF
Sbjct: 61  HRVVKDFMIQGGDFSIGNGTGGESIYGGTFADENFIMKHNKPFLLSMANRGRDTNGSQFF 120

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKA 183
           ITTQPAPHLD VHVVFG VVSGQ +V+HIE LPVD+MSRPLQD +VV C EL+LK K KA
Sbjct: 121 ITTQPAPHLDNVHVVFGEVVSGQEIVTHIEGLPVDRMSRPLQDAKVVNCGELILKLKSKA 180

Query: 184 KEKRKA 189
           K KR+A
Sbjct: 181 K-KREA 185

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417107|ref|XP_003491260.1| PREDICTED: peptidyl-prolyl cis-trans isomerase 1-like [Bombus impatiens]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 140/186 (75%), Positives = 162/186 (87%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M  + PR +FD+E+  +P+GR+VFEL++DICP+TCENFRALCTGEKG+GKTTGK LHY  
Sbjct: 1   MVNVNPRVFFDIEVGGLPMGRVVFELFADICPMTCENFRALCTGEKGLGKTTGKQLHYKG 60

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
           IVFHRVVK FMIQ GDFSVGNGTGGESIYGGTF DENF ++H++ FLLSMANRG+DTNGS
Sbjct: 61  IVFHRVVKDFMIQGGDFSVGNGTGGESIYGGTFADENFVIRHNKSFLLSMANRGRDTNGS 120

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFFITTQPAPHLD VHVVFG VVSGQ +V+HIE LPVD+MSRPLQD +VV C ELVLK K
Sbjct: 121 QFFITTQPAPHLDNVHVVFGEVVSGQEIVTHIEGLPVDRMSRPLQDAKVVNCGELVLKVK 180

Query: 181 LKAKEK 186
            K K++
Sbjct: 181 NKTKKR 186

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713178|ref|XP_003395124.1| PREDICTED: peptidyl-prolyl cis-trans isomerase 1-like isoform 1 [Bombus terrestris] gi|340713180|ref|XP_003395125.1| PREDICTED: peptidyl-prolyl cis-trans isomerase 1-like isoform 2 [Bombus terrestris]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 140/186 (75%), Positives = 162/186 (87%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M  + PR +FD+E+  +P+GR+VFEL++DICP+TCENFRALCTGEKG+GKTTGK LHY  
Sbjct: 1   MVNVNPRVFFDIEVGGLPMGRVVFELFADICPMTCENFRALCTGEKGLGKTTGKQLHYKG 60

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
           IVFHRVVK FMIQ GDFSVGNGTGGESIYGGTF DENF ++H++ FLLSMANRG+DTNGS
Sbjct: 61  IVFHRVVKDFMIQGGDFSVGNGTGGESIYGGTFADENFVIRHNKSFLLSMANRGRDTNGS 120

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFFITTQPAPHLD VHVVFG VVSGQ +V+HIE LPVD+MSRPLQD +VV C ELVLK K
Sbjct: 121 QFFITTQPAPHLDNVHVVFGEVVSGQEIVTHIEGLPVDRMSRPLQDAKVVNCGELVLKVK 180

Query: 181 LKAKEK 186
            K K++
Sbjct: 181 NKTKKR 186

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193652624|ref|XP_001949110.1| PREDICTED: hypothetical protein LOC100168064 [Acyrthosiphon pisum]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 165/196 (84%), Gaps = 1/196 (0%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +RPRC+ DV + +I LGRIVFEL+ D CP+TCENFRALCTGEKG+GKTTGK LH+  ++F
Sbjct: 12  VRPRCFMDVAVDNIILGRIVFELFDDFCPLTCENFRALCTGEKGLGKTTGKPLHFQGVIF 71

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRVVK FM+Q GDFS GNGTGGESI+GGTF DENF+LKHD+PFLLSMANRG DTNGSQFF
Sbjct: 72  HRVVKSFMVQCGDFSTGNGTGGESIFGGTFPDENFDLKHDQPFLLSMANRGPDTNGSQFF 131

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKA 183
           ITTQP PHLDG+HVVFG VVSGQ VV  IE L VDK SRPLQD +VVKC EL+LKSK+K 
Sbjct: 132 ITTQPTPHLDGIHVVFGRVVSGQPVVMQIEELGVDKNSRPLQDAKVVKCGELILKSKIKQ 191

Query: 184 KEKRKA-SPTSASSDE 198
            EK  + S TS+ SD+
Sbjct: 192 SEKSASDSETSSGSDD 207

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202211|gb|EFN81698.1| Peptidyl-prolyl cis-trans isomerase G [Harpegnathos saltator]

 Score =  317 bits (811), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 160/186 (86%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M  I  R +FD+E+  +P+GRI+FEL+SDICPITCENFRALCTGEKG+GKTTGK L+Y  
Sbjct: 1   MVNINTRVFFDIEVGGLPMGRIIFELFSDICPITCENFRALCTGEKGLGKTTGKPLYYQG 60

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
           IVFHRVVK FMIQ GDFSVGNGTGGESIY G F DENF +KHD+PFLLSMANRG+DTNGS
Sbjct: 61  IVFHRVVKDFMIQGGDFSVGNGTGGESIYNGIFADENFIVKHDKPFLLSMANRGRDTNGS 120

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFFITTQPAPHLD VHVVFG VVSGQ VV+HIE LPVD+MSRPLQD +VV C EL+LK K
Sbjct: 121 QFFITTQPAPHLDNVHVVFGEVVSGQEVVTHIEGLPVDRMSRPLQDAKVVNCGELILKIK 180

Query: 181 LKAKEK 186
            K K++
Sbjct: 181 NKVKKR 186

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026905|gb|EGI67006.1| NK-tumor recognition protein [Acromyrmex echinatior]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 144/189 (76%), Positives = 162/189 (85%), Gaps = 1/189 (0%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M  +  R +FDVE+  +P+GRIVFEL+SD CPITCENFRALCTGEKG+G TT K LHY  
Sbjct: 1   MVNVNTRVFFDVEVGGLPMGRIVFELFSDTCPITCENFRALCTGEKGLGNTTNKPLHYKG 60

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
           IVFHRVVK FMIQ GDFS+GNGTGGESIYGGTF DENF +KH++PFLLSMANRG+DTNGS
Sbjct: 61  IVFHRVVKDFMIQGGDFSIGNGTGGESIYGGTFGDENFIMKHNKPFLLSMANRGRDTNGS 120

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           QFFITTQPAPHLD VHVVFG VVSGQ +++HIE LPVD+MSRPLQD +VV C ELVLK K
Sbjct: 121 QFFITTQPAPHLDNVHVVFGEVVSGQEIITHIEGLPVDRMSRPLQDAKVVNCGELVLKIK 180

Query: 181 LKAKEKRKA 189
            KAK KR+A
Sbjct: 181 SKAK-KREA 188

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229608905|ref|NP_001153475.1| moca cyclophilin [Nasonia vitripennis]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 136/174 (78%), Positives = 151/174 (86%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           ++PR YFDVE+  +P+GRIVFELYSD+CP TCENFRALCTGE G+G +T K L Y  IVF
Sbjct: 3   VKPRVYFDVEVGGLPIGRIVFELYSDVCPKTCENFRALCTGEMGLGLSTNKPLCYKGIVF 62

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRVVK FMIQ GDFSVGNGTGGESIYGGTF+DENF  KHD+PFLLSMANRGKDTNGSQFF
Sbjct: 63  HRVVKNFMIQGGDFSVGNGTGGESIYGGTFKDENFIYKHDKPFLLSMANRGKDTNGSQFF 122

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVL 177
           +TTQP PHLD VHVVFG V+SGQ VVSH+E LPVD+MSRPLQD +VV C ELVL
Sbjct: 123 VTTQPTPHLDNVHVVFGQVISGQEVVSHVEGLPVDRMSRPLQDAKVVNCGELVL 176

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787425|gb|JAA59164.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 148/176 (84%)

Query: 2   KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
           K   PRC+FDV+I D P GRIVFEL++D+CPITCENFRALCTGE G GKTTGK LHY  +
Sbjct: 6   KRYNPRCFFDVQIGDKPAGRIVFELFADVCPITCENFRALCTGECGTGKTTGKPLHYKGV 65

Query: 62  VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
            FHRV++ FMIQ GDFSVGNG+GGESIYGGTF+DE FELKHD+P+LLSMANRGKDTNGSQ
Sbjct: 66  KFHRVIRSFMIQGGDFSVGNGSGGESIYGGTFKDEGFELKHDQPYLLSMANRGKDTNGSQ 125

Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVL 177
           FFITTQP PHLDGVHVVFGHV+ G++VV  IE+ PVD  S P+Q V +  C ELVL
Sbjct: 126 FFITTQPTPHLDGVHVVFGHVIKGEDVVQAIESQPVDNNSCPVQPVIIANCGELVL 181

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055829|ref|XP_001994815.1| GH17446 [Drosophila grimshawi] gi|193892578|gb|EDV91444.1| GH17446 [Drosophila grimshawi]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 144/225 (64%), Positives = 178/225 (79%), Gaps = 3/225 (1%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
            RPRC+FD+ +  + +GRIVFEL+SDI P T ENFR+LCTGEKG G  TGK LHY  ++F
Sbjct: 11  TRPRCFFDITLGGLSVGRIVFELFSDIAPKTVENFRSLCTGEKGTGLVTGKRLHYKGVIF 70

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRVVK FM+Q+GDFS GNGTGGESIYGGTFEDE FE KHD PFLLSMANRGK+TNGSQFF
Sbjct: 71  HRVVKDFMVQAGDFSAGNGTGGESIYGGTFEDECFEKKHDRPFLLSMANRGKNTNGSQFF 130

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKA 183
           ITTQPAPHLD +HVVFGHV+SGQ++V  +E+LP+D+ SRPLQD  +V C ELV +SK K 
Sbjct: 131 ITTQPAPHLDNIHVVFGHVLSGQDLVRQLEDLPIDRNSRPLQDAAIVNCGELVKQSKAKK 190

Query: 184 KEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDK 228
           ++KR+    S +++ES  E E+  E +Q   +K AKK++ HK+ K
Sbjct: 191 EKKRRK--RSTATEESGSENEQLVEAKQQRKDK-AKKKRSHKESK 232

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
FB|FBgn0039581	1002	Moca-cyp "Moca-cyp" [Drosophil	0.632	0.171	0.622	4.7e-56
UNIPROTKB|E1C591	747	PPIG "Uncharacterized protein"	0.647	0.235	0.590	3.7e-55
UNIPROTKB|A8E658	753	PPIG "Uncharacterized protein"	0.647	0.233	0.590	1.3e-54
RGD|620315	752	Ppig "peptidylprolyl isomerase	0.647	0.234	0.590	1.3e-54
UNIPROTKB|O55035	752	Ppig "Peptidyl-prolyl cis-tran	0.647	0.234	0.590	1.3e-54
UNIPROTKB|J9PAE8	753	PPIG "Uncharacterized protein"	0.647	0.233	0.585	1.6e-54
UNIPROTKB|C9JN15	246	PPIG "Peptidyl-prolyl cis-tran	0.647	0.715	0.585	1.6e-54
UNIPROTKB|Q13427	754	PPIG "Peptidyl-prolyl cis-tran	0.647	0.233	0.585	1.6e-54
UNIPROTKB|F1S1V5	753	PPIG "Uncharacterized protein"	0.647	0.233	0.585	1.6e-54
MGI|MGI:2445173	752	Ppig "peptidyl-prolyl isomeras	0.647	0.234	0.585	1.6e-54

FB|FBgn0039581 Moca-cyp "Moca-cyp" [Drosophila melanogaster (taxid:7227)]

 Score = 585 (211.0 bits), Expect = 4.7e-56, P = 4.7e-56
 Identities = 107/172 (62%), Positives = 125/172 (72%)

Query:     5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
             RPRC+FD+ +  + +GRIVFEL++D+ P T ENFRALC             L Y  ++FH
Sbjct:    44 RPRCFFDISLGGLGMGRIVFELFNDVAPKTAENFRALCTGEKGFGLITGKKLQYKGVIFH 103

Query:    65 RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
             RVVK FM+Q+GDFS GNGTGGESIYGGTFEDE+FE KHD PFLLSMANRGK+TNGSQFFI
Sbjct:   104 RVVKDFMVQAGDFSAGNGTGGESIYGGTFEDESFEKKHDRPFLLSMANRGKNTNGSQFFI 163

Query:   125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             TTQPAPHLD          SGQ +V  +E LPVD+ SRPLQD  +  C ELV
Sbjct:   164 TTQPAPHLDNIHVVFGQVISGQELVRQLEGLPVDRNSRPLQDAAIANCGELV 215

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;NAS;IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|E1C591 PPIG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 104/176 (59%), Positives = 126/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I+++P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 VKVQRPRCFFDIAINNVPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FMIQ GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMIQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDASSKPYAEVRILSCGELI 178

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A8E658 PPIG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 104/176 (59%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C ELV
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELV 178

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

RGD|620315 Ppig "peptidylprolyl isomerase G" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 104/176 (59%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C ELV
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELV 178

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006457 "protein folding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016363 "nuclear matrix" evidence=IDA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|O55035 Ppig "Peptidyl-prolyl cis-trans isomerase G" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 104/176 (59%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C ELV
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELV 178

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|J9PAE8 PPIG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/176 (58%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|C9JN15 PPIG "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/176 (58%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|Q13427 PPIG "Peptidyl-prolyl cis-trans isomerase G" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/176 (58%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1S1V5 PPIG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/176 (58%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

MGI|MGI:2445173 Ppig "peptidyl-prolyl isomerase G (cyclophilin G)" [Mus musculus (taxid:10090)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/176 (58%), Positives = 125/176 (71%)

Query:     1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
             +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct:     3 IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 62

Query:    61 IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
              +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct:    63 CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 122

Query:   121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
             QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct:   123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 178

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O55035	PPIG_RAT	5, ., 2, ., 1, ., 8	0.6818	0.6470	0.2340	yes	N/A
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.5747	0.6397	0.4702	yes	N/A
Q75A33	PPID_ASHGO	5, ., 2, ., 1, ., 8	0.5282	0.7022	0.5176	yes	N/A
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.6010	0.6691	0.4892	yes	N/A
Q4WIF3	PPID_ASPFU	5, ., 2, ., 1, ., 8	0.6171	0.6213	0.4482	yes	N/A
P53691	PPID_YEAST	5, ., 2, ., 1, ., 8	0.5329	0.7095	0.5202	yes	N/A
Q6FNU6	PPID_CANGA	5, ., 2, ., 1, ., 8	0.5657	0.6360	0.4663	yes	N/A
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.6162	0.6176	0.4528	yes	N/A
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.5353	0.7169	0.5241	yes	N/A
A2AR02	PPIG_MOUSE	5, ., 2, ., 1, ., 8	0.6761	0.6470	0.2340	yes	N/A
Q13427	PPIG_HUMAN	5, ., 2, ., 1, ., 8	0.6761	0.6470	0.2334	yes	N/A
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.6337	0.625	0.4569	yes	N/A
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.5023	0.75	0.544	yes	N/A
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.5606	0.6323	0.4686	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	272
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	9e-89
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-75
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-62
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	2e-59
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	3e-58
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-56
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-55
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-51
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	5e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	7e-44
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	2e-35
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	1e-32
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	5e-32
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	1e-18
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-09
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	3e-08
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	3e-08
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	5e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	2e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-04
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	2e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	2e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
PLN02967	581	PLN02967, PLN02967, kinase	3e-04
pfam14303	147	pfam14303, NAM-associated, No apical meristem-asso	3e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	3e-04
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	6e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	8e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.001
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.001
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.001
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.001
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.002
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.003
PLN03083	803	PLN03083, PLN03083, E3 UFM1-protein ligase 1 homol	0.003
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.004
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.004
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.004
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.004
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	0.004

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  260 bits (667), Expect = 9e-89
 Identities = 97/167 (58%), Positives = 113/167 (67%), Gaps = 4/167 (2%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P+ +FD+ I   P GRIV EL++D+ P T ENFRALCTGEKG G   GK   Y    FHR
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHR 57

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FMIQ GDF+ GNGTGG+SIYG  F DENF+LKH  P LLSMAN G +TNGSQFFIT
Sbjct: 58  VIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFIT 117

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           T   P LDG HVVFG VV G +VV  IEN+      +P + V +  C
Sbjct: 118 TVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGN-GKPKKKVVIADC 163

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  227 bits (581), Expect = 1e-75
 Identities = 98/171 (57%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           RP+ +FD+ I + P GRIVFEL+SD+ P T ENFRALC G+K    ++GKNLHY   +FH
Sbjct: 15  RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKV--GSSGKNLHYKGSIFH 72

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FM Q GD +  NGTGGESIYG  F DENF+LKHD+P LLSMAN G +TNGSQFFI
Sbjct: 73  RIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFI 132

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           TT P P LDG HVVFG V+ G  VV  +E     +   P + V V  C EL
Sbjct: 133 TTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  192 bits (491), Expect = 2e-62
 Identities = 77/157 (49%), Positives = 86/157 (54%), Gaps = 14/157 (8%)

Query: 16  DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSG 75
           D   GRIV ELY D  P T ENF +L  G             Y    FHRV+ GFMIQ G
Sbjct: 3   DTTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGG 51

Query: 76  DFSVGNGTGGESIYGGTFEDENFELK-HDEPFLLSMANRGKDTNGSQFFITTQPAPHLDG 134
           D +     GG S  G  F DENF LK H     LSMAN G +TNGSQFFITT P PHLDG
Sbjct: 52  DPT--GTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDG 109

Query: 135 VHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 171
            H VFG VV G +VV  IE    D+  RP++ V +  
Sbjct: 110 KHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  185 bits (471), Expect = 2e-59
 Identities = 71/164 (43%), Positives = 90/164 (54%), Gaps = 20/164 (12%)

Query: 9   YFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVK 68
           + D+  +   LGRIV EL+ D  P T ENF +LC           K   Y   +FHRV+ 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC-----------KKGFYDGTIFHRVIP 46

Query: 69  GFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQP 128
           GFMIQ GD + G GTGG+     +  DE       +   LSMA  G ++ GSQFFIT   
Sbjct: 47  GFMIQGGDPT-GPGTGGK----RSIPDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 129 APHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           APHLDG + VFG VV G +VV  IE +  D   RPL+DV++  C
Sbjct: 102 APHLDGGYTVFGRVVEGMDVVEKIEKVETDG-DRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  183 bits (466), Expect = 3e-58
 Identities = 88/171 (51%), Positives = 101/171 (59%), Gaps = 4/171 (2%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P  +FDV I  IP GRI  EL++DI P T ENFR  CTGE    +  G    Y    FHR
Sbjct: 19  PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHR 75

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+K FMIQ GDF  G+GTG  SIYG  FEDENF  KH  P LLSMAN G +TNG QFFIT
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 126 TQPAPHLDGVHVVFGHVV-SGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                 LD  HVVFG V+  G  VV  IEN+     +RP     + +C E+
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  177 bits (452), Expect = 3e-56
 Identities = 67/169 (39%), Positives = 82/169 (48%), Gaps = 20/169 (11%)

Query: 14  ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQ 73
           I +   G I  ELY D  P T  NF  L            K   Y   +FHRV+ GFMIQ
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLV-----------KEGFYDGTIFHRVIPGFMIQ 51

Query: 74  SGDFSVGNGTGGESIYGGTFEDENFELKHD--EPFLLSMANRG-KDTNGSQFFITTQPAP 130
            GD + G+GTGG       F+DENF L  D  +   LSMA  G  ++NGSQFFIT    P
Sbjct: 52  GGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNP 108

Query: 131 HLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ---DVRVVKCNELV 176
            LDG + VFG VV G +VV  I+N   D          D   +   ++V
Sbjct: 109 FLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  175 bits (445), Expect = 2e-55
 Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G I   L+ +  P T ENF               +N +Y N +FHRV+KGFMIQ+GD  
Sbjct: 6   KGDIHIRLFPEEAPKTVENFTTHA-----------RNGYYNNTIFHRVIKGFMIQTGD-P 53

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G+GTGGESI+G  FEDE +  LKHD P+ LSMAN G +TNGSQFFITT   P LD  H 
Sbjct: 54  TGDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHT 113

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV 170
           VFG VV G +VV  IEN+  DK  RP +D++++
Sbjct: 114 VFGRVVKGMDVVQRIENVKTDKNDRPYEDIKII 146

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  165 bits (420), Expect = 1e-51
 Identities = 77/152 (50%), Positives = 95/152 (62%), Gaps = 13/152 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG I  EL+ D CP  CENF ALC              +Y   +FHR +KGFM+Q+GD  
Sbjct: 9   LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGD-P 56

Query: 79  VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GGESI+G  FEDE  E LKHD   ++SMAN G +TNGSQFFIT    PHLDG + 
Sbjct: 57  TGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYT 116

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 169
           VFG V+ G   +  +E LPVDK  RPL+++R+
Sbjct: 117 VFGKVIDGFETLDTLEKLPVDKKYRPLEEIRI 148

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  159 bits (403), Expect = 5e-49
 Identities = 67/152 (44%), Positives = 87/152 (57%), Gaps = 13/152 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G +  EL+ D  P  CENF  LC           K  +Y   +FHR ++ FMIQ GD +
Sbjct: 8   KGDLNLELHCDKAPKACENFIKLC-----------KKGYYDGTIFHRSIRNFMIQGGDPT 56

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GGESI+G  F+DE    L HD   +LSMAN G +TNGSQFFIT +   HLDG H 
Sbjct: 57  -GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHT 115

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 169
           VFG VV G   +  +EN+P     RP +++++
Sbjct: 116 VFGRVVGGLETLEAMENVPDPGTDRPKEEIKI 147

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  145 bits (368), Expect = 7e-44
 Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 14/154 (9%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I  ELY +  P TC+NF  L    +G         +Y   +FHR++K FMIQ GD  
Sbjct: 6   MGEITLELYWNHAPKTCKNFYELAK--RG---------YYNGTIFHRLIKDFMIQGGD-P 53

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG SIYG  FEDE + ELKH    +LSMAN G +TNGSQFFIT  P P LDG H 
Sbjct: 54  TGTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHT 113

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 171
           +FG V  G  V+ ++  +      RP+ +V+++K
Sbjct: 114 IFGRVSKGMKVIENMVEVQTQT-DRPIDEVKILK 146

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  124 bits (314), Expect = 2e-35
 Identities = 62/157 (39%), Positives = 83/157 (52%), Gaps = 16/157 (10%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G I  EL+S   P  C NF  LC              +Y N +FHRVV GF+IQ GD +
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCL-----------EGYYDNTIFHRVVPGFIIQGGDPT 62

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G GTGGESIYG  F+DE +  L+ +   L+ MAN G D+NGSQFF T   A  L+  H 
Sbjct: 63  -GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHT 121

Query: 138 VFGHVV--SGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           +FG V   +  N++  +  +  DK  RP+   ++   
Sbjct: 122 LFGKVTGDTIYNLLK-LAEVETDKDERPVYPPKITSV 157

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  117 bits (294), Expect = 1e-32
 Identities = 65/160 (40%), Positives = 88/160 (55%), Gaps = 21/160 (13%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG +V +L++D CP+ C NF  LC           K  +Y   +F+ V K F+ Q+GD +
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLC-----------KLKYYNFCLFYNVQKDFIAQTGDPT 54

Query: 79  VGNGTGGESIYGGT-------FEDE-NFELKHDEPFLLSMANRGKDTNGSQFFIT-TQPA 129
            G G GGESIY          FE E    LKH +   +SM N G + NGSQF+IT  +  
Sbjct: 55  -GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113

Query: 130 PHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 169
            +LDG H VFG VV G +V+  I +  VD   RPL+D+R+
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRI 153

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  118 bits (296), Expect = 5e-32
 Identities = 76/201 (37%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRV 66
           R + D+ I D+  GR+VFEL+ D+ P T ENFRAL TG  GI   TG  L YL    H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 67  VKGF-MIQSGDF-SVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
            +   +I  G+  S    + G  I      DE +  +H E  LL+M + G  T+GS F I
Sbjct: 114 DRNNNIIVLGELDSFNVSSTGTPI-----ADEGYRHRHTERGLLTMISEGPHTSGSVFGI 168

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
           T  P+P LD   VVFG  V   +++  +E+LP+D + RPL  V V  C  L  +     +
Sbjct: 169 TLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPPGRQ 228

Query: 185 EKRKASPTSASSDESDKEEEE 205
           +   A+  SASS+      EE
Sbjct: 229 QLLAAADDSASSEHVACAAEE 249

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 53/170 (31%), Positives = 65/170 (38%), Gaps = 47/170 (27%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG IV ELY D  PIT ENF A     KG          Y N +FHRV+ GF+IQ     
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYV--RKG---------FYDNTIFHRVISGFVIQ----- 49

Query: 79  VGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNG--------------SQFFI 124
                      GG F  +  + +  +P      N   +T G              SQFFI
Sbjct: 50  -----------GGGFTPDLAQKETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFI 98

Query: 125 TTQPAPHLD-----GVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 169
             +    LD       + VFG V  G +VV  I  +         QDV V
Sbjct: 99  NLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYS-FGSYQDVPV 147

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 48/171 (28%), Positives = 64/171 (37%), Gaps = 51/171 (29%)

Query: 20  GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G I  EL S   P++ +NF                +  Y N  FHRV+ GFMIQ G F+ 
Sbjct: 38  GNIELELNSQKAPVSVKNFVDYVN-----------SGFYNNTTFHRVIPGFMIQGGGFT- 85

Query: 80  GNGTGGESIYGGTFEDENFELKHDEPFLLSMANRG---------------KDTNGSQFFI 124
                           E  + K   P + + A+ G               KD+  SQFFI
Sbjct: 86  ----------------EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFI 129

Query: 125 TTQPAPHLD------GVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRV 169
                  LD      G + VFG VV G +V   I  +P   +  P Q+V  
Sbjct: 130 NVADNAFLDHGQRDFG-YAVFGKVVKGMDVADKISQVPTHDVG-PYQNVPS 178

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 27/147 (18%)

Query: 20  GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G IV + + D  P T +NF   C           +   Y N +FHRV+ GFMIQ G F  
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEP 57

Query: 80  GNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNG--SQFFITTQP-------A 129
           G     +       ++E N  LK+     L+MA R +  +   +QFFI            
Sbjct: 58  GM---KQKATKEPIKNEANNGLKNTRG-TLAMA-RTQAPHSATAQFFINVVDNDFLNFSG 112

Query: 130 PHLDGV-HVVFGHVVSGQNVVSHIENL 155
             L G  + VF  VV G +VV  I+ +
Sbjct: 113 ESLQGWGYCVFAEVVEGMDVVDKIKGV 139

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 47/167 (28%)

Query: 21  RIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGD-FSV 79
            IV + Y+   P+T  NF  L   E+G          Y  + FHRV  GF++Q+GD    
Sbjct: 10  TIVLDGYN--APVTAGNFVDLV--ERGF---------YDGMEFHRVEGGFVVQTGDPQGK 56

Query: 80  GNG-----TG--------------GESIYGGTFE-----DENFELKHDEPFLLSMANRGK 115
             G     TG               + +YG T E     DE   L  +    ++MA    
Sbjct: 57  NPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEF 116

Query: 116 DTNG--SQFFI-------TTQPAPHLDGVHVVFGHVVSGQNVVSHIE 153
           D N   SQFF        T      LDG + VFG+V  G +++  ++
Sbjct: 117 DPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 46/74 (62%)

Query: 199 SDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKR 258
             K+  +K +     +EK+ ++ KK KK K    KK + EEEEEKE+ E+   E+E +  
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Query: 259 KKHKKDKKKRKKKS 272
           ++ +++++K+KK++
Sbjct: 464 EEKEEEEEKKKKQA 477

Length = 482

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 168 RVVKCNELVLKSKLK-AKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKK 226
           RV K       +K K AKE +  S      ++   +EE+K++ E+   E + +K K+  K
Sbjct: 79  RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138

Query: 227 DKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
           +K+  K+K K +E++ +E  ++ + +K  + R K +  K  +KK  
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPP 184

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 169  VVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR---KKHK 225
              K        + +A E++  +      +   K +  K++ E+     EAKK+    K K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406

Query: 226  KDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
             D+ KK   +K + +E K++ E+     EAKK+ +  K   + KKK+
Sbjct: 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA 1453

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRK-----KHKKDKKKKK 232
            + K+KA+E +KA      ++E  K EEEK++ EQ   ++  +K+K     K +++ K K 
Sbjct: 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663

Query: 233  KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
             +   + EE+K++ E+    +E +K+      K+  + K
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKK-----RKKHKKDKKKKK 232
            ++K KA+E +KA      ++E+ K +E K++ E+     EAKK     +KK  + KK  +
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507

Query: 233  KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
             K K +E ++ EE ++ D  K+A++ KK  + KK  +KK
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546

Length = 2084

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 45/73 (61%)

Query: 194 ASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEK 253
             S ++ K+ ++  E  +   E+E K++KK     KKK+++ + E+E+++EE E+ + E 
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Query: 254 EAKKRKKHKKDKK 266
           E +K ++ +K KK
Sbjct: 463 EEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 42/72 (58%)

Query: 186 KRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEE 245
             K +           E++ +EE ++   +  A K+K+ +++++K+KK+ + EEEEE+ E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Query: 246 GEQTDSEKEAKK 257
            E+ + E++ KK
Sbjct: 464 EEKEEEEEKKKK 475

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 182  KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
            KA+EK+KA      ++E+ K +E K++ E+  ++K+A   KK  ++ KK  + +K E E 
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKKADAAKKKAEEAKKAAEAAKAEAEA 1354

Query: 242  EKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
              +E E  + + EA ++KK +  KK    K
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 182  KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRK-----KHKKDKKKKKKKSK 236
             A+E +KA      ++E+ K EE++++  +   ++  + +K     K + ++KKK ++ K
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722

Query: 237  YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
              EEE K + E+   E E  K+K  +  K + +KK
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 28/95 (29%), Positives = 49/95 (51%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
            ++K KA   +K +  +  + E+ K E E    E   +E++A+  +K K++ KKK   +K 
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

Query: 238  EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            + EE+K+  E     +E KK+    K     KKK+
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420

Length = 2084

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 197 DESDKEEEEKEEGEQTD-SEKEAKK-RKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKE 254
           D+    E E+EEGE  + S  E KK RKK +K +KK +K     EE EK   ++      
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEK-----EEAEKAAAKKKAEAAA 443

Query: 255 AKKRKKHKKDKKK 267
            K +    + KK 
Sbjct: 444 KKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKK---KKK 234
           K+K +A+ ++KA   +    E + + +   E ++    K A+ +KK + + K K   K K
Sbjct: 133 KAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKK----KAAEAKKKAEAEAKAKAEAKAK 188

Query: 235 SKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRK 269
           +K EE + K E  +  +  EA  + + +       
Sbjct: 189 AKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAA 223

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 20/73 (27%), Positives = 42/73 (57%)

Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQ 248
                A+       E+ +++ E+   EK+ K     KK+++++++K K EEE+E+EE E 
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Query: 249 TDSEKEAKKRKKH 261
            + ++E +++KK 
Sbjct: 463 EEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR--KKHKKDKKKKKKKS 235
            ++K KA+EK+KA      ++E+ K +E K++ E+    +EAKK+  +  K D+ KKK + 
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481

Query: 236  KYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
              + +E K++ E+   + +  K+    K K    KK+
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

Length = 2084

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 19/69 (27%), Positives = 42/69 (60%)

Query: 204 EEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKK 263
            E+E    T S+K  KK KK  +  +KK+++ K E++++   G++ + E+E +K KK ++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 264 DKKKRKKKS 272
            +++ ++  
Sbjct: 455 KEEEEEEAE 463

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
            ++K KA+E +KA      ++E+ K EE K++ E+     EAKK+ +  K   + KKK+  
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA-- 1492

Query: 238  EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRK 269
             EE +K+  E   + +  KK  + KK ++ +K
Sbjct: 1493 -EEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523

Length = 2084

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 221 RKKHKKDK-KKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
           R K K    KK  K SK    +  E+ E+   + + KKR +  K+  KR+K S
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429

Length = 434

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 182  KAKEKRKASPTSAS-----SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
            KA+EK+KA     +     +DE+ K+ EE ++ ++   + E  K+K     KK ++ K  
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344

Query: 237  YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
             E  + + E    ++E   +K +  +K K++ KKK+
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 180  KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR--KKHKKDKKKKKKKSKY 237
            K  A  K+KA      ++E  K +E K++ E+     EAKK+  +  K ++ KKK +   
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

Query: 238  EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            + +E K++ E+     EAKK+ +  K K    KK+
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKE-EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
            + K KA E +K +  +  +DE+ K+ EE K++ +    + E  K+       + +    +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358

Query: 237  YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
             E  EEK E  +   E+  KK    KK  +++KK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Length = 2084

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 40/70 (57%)

Query: 188 KASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGE 247
             S   + S+ S+KE   K E E    E+E K++KK K+ KK+KK+K   +E+  + +G 
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183

Query: 248 QTDSEKEAKK 257
           +   +K+ KK
Sbjct: 184 KKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 165 QDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTD-SEKEAKKRKK 223
            D  V +  +   K      +  K     +  +E  ++E+ KEE ++     KE  K +K
Sbjct: 73  SDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132

Query: 224 HKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            K++ K+K+   + E+E+EK+  E  D E+E K+ +   K + K+  K 
Sbjct: 133 PKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 178  KSKLKAKEKRKASPTSAS-----SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
            ++ +KA+E RKA     +     +DE+ K EE+K+  E     +EAKK  + KK  ++ K
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Query: 233  KKS-----KYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            KK+     K EE ++  E  + ++E  A + +  ++  +  +KK 
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
            + K KA E +KA+     +DE+ K+ EEK++ ++   + E  K    K D+ KKK +   
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK----KADEAKKKAEEAK 1457

Query: 238  EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            + EE K++ E+     EAKK+ +  K   + KKK+
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 180  KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRK---KHKKDKKKKKKKSK 236
            K K + K+KA      ++E  K +E K++ E+   + +  K+    K K D+ KKK + K
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430

Query: 237  YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
             + +E K++ E+     EAKK+ +  K  ++ KKK+
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466

Length = 2084

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 185 EKRKASPTS--------ASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
           +K K  P S         S +      EE+ +   T S K+ KK  K+ + KKK +KK K
Sbjct: 17  QKSKLQPISYIYSNVLVLSKEILSTFSEEENK-VATTSTKKDKKEDKNNESKKKSEKKKK 75

Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
            ++E+++ + E          +K  K  KK  K K 
Sbjct: 76  KKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111

Length = 413

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 189 ASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQ 248
           A+P   +     K+++++   E    +KE ++++K K  KKK KKK    ++++K++ + 
Sbjct: 49  ATPIYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKK----KDKDKDKKDD 104

Query: 249 TDSEKEAKKRKKHKKDKKKRKKKS 272
              +K  KK +K  +DK +   KS
Sbjct: 105 KKDDKSEKKDEKEAEDKLEDLTKS 128

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 175 LVLKSKLKAKEKRKASPTSASSDESDKEEEE-KEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           L   S    +          S D+   E EE KEE ++  + ++ + +   +K+ ++ ++
Sbjct: 34  LFFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93

Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKK 260
           +++ E+EE  +E E+   EK     +K
Sbjct: 94  ENEEEDEESSDENEKETEEKTESNVEK 120

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 178 KSKLKAKEKRKASPTSASSD----ESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           K +      + A  +S   D    E+ K E EK + E   +++EA K K HK    K++ 
Sbjct: 253 KQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQES 312

Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
           K+  +E E+KE   Q   E  A+  +K K   + +  
Sbjct: 313 KASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPT 349

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 171 KCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKK 230
           KC E  L S    K   K      ++     +E + E G++ + EKE  K +K KK +K 
Sbjct: 65  KCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124

Query: 231 KK-KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           K+  K +  +EE KE+    + EKE +K+ +  +D+++ KK+
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 178  KSKLKAKEKRKASPTSA--SSDESDKEEEEKEEGEQTDSEKEAKKRK----KHKKDKKKK 231
            + K KA+E +KA   +   +++E+ K EE+K++ E+    +E +K+     K + ++ KK
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703

Query: 232  KKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
             ++ K +E EEK++ E+    +E  K K  +  K+  + K
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

Length = 2084

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 158 DKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASP-------TSASSDESDKEEEEKEEGE 210
             +S    +V V+    L   S+ + K    ++         + S  +S+K++++K+E +
Sbjct: 22  QPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81

Query: 211 QTDSEKEAKK-RKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
           +  SE E K   K  KK KK KKK  K +  E+ +      +E   K    
Sbjct: 82  EPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132

Length = 413

>gnl|CDD|215521 PLN02967, PLN02967, kinase

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 120 SQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKS 179
           +QF    +    +  +    G                +   SR       +  +E   ++
Sbjct: 7   TQFLSFPRCNADVPCLLQSLGFNKFRGERWRLQNKFLLAAGSRKKI-ESALAVDEEPDEN 65

Query: 180 KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEE 239
              +K+K   S   A+     +  E  EEG +    ++A   K+ KK  ++ ++K+    
Sbjct: 66  GAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAAS 125

Query: 240 EEEKEEGEQTDSEKEAKKRKKHKKDK 265
            + +EE     +EK+ +KR+K KK  
Sbjct: 126 SDVEEEK----TEKKVRKRRKVKKMD 147

Length = 581

>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 172 CNELVLKSKLKAKEKRKASPTSASSDES---DKEEEEKEEGEQTDSEKEAKKRKKHKKDK 228
            ++     K   K+K++++ +  S+      D+++E   E ++ +  K+AK++ +  K K
Sbjct: 19  KSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLK 78

Query: 229 KKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
            KK++  K +E+EE+      ++EKE  + +K K + K  K+
Sbjct: 79  AKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKE 120

This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 196 SDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEA 255
           S + +++EE++EE  +  ++ +AKK  K K ++K+K K+ K EE+  +E  E T  ++ A
Sbjct: 36  SWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREK-EEKGLRELEEDTPEDELA 94

Query: 256 KKRKKHK 262
           +K +  K
Sbjct: 95  EKLRLRK 101

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 207 EEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKK 266
              E  ++E + +K++  +K  KKK KKSK + +++     +  SE +  + K++ K KK
Sbjct: 1   AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60

Query: 267 KRKKKS 272
           K+KKK 
Sbjct: 61  KKKKKK 66

Length = 470

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 47/76 (61%), Gaps = 8/76 (10%)

Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           + + K   KA++KR+        +E  +++++   G++ + E+E +K KK ++ ++++++
Sbjct: 410 KKIKKIVEKAEKKRE--------EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Query: 234 KSKYEEEEEKEEGEQT 249
             + +EEEE+++ +Q 
Sbjct: 462 AEEEKEEEEEKKKKQA 477

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 29/98 (29%), Positives = 58/98 (59%), Gaps = 6/98 (6%)

Query: 178  KSKLKAKEKRKASPTSASSDES-DKEEEEKEEGEQTDSEKEAKKRK-----KHKKDKKKK 231
            + K KA+E +KA      + E+  KE EE ++ E+   ++  +K+K     K +++ K K
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731

Query: 232  KKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRK 269
             +++K E EE+K++ E+   ++E KK+  H K ++++K
Sbjct: 1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 180 KLKAKEKRKASPTSASSDESD---KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
           + K  E+R A+  +A   E      EE++K+  E    +    K K   + +KK K+++K
Sbjct: 90  RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAK 149

Query: 237 YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKK 270
            + EEE +     +++K+A + KK  + + K K 
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 192 TSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEK 243
           +S+  +E + EEE  +E EQ D  +   + K+ KK +  K K  K + + E 
Sbjct: 92  SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 180  KLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEE 239
            K KA+E +KA      ++E+ K +E K++ E+  ++K+A + KK  + KKK  +  K EE
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEE 1520

Query: 240  EEEKEEGEQTDSEKEAKKRKKHKKDKK 266
             ++ +E ++ +  K+A + KK ++ KK
Sbjct: 1521 AKKADEAKKAEEAKKADEAKKAEEKKK 1547

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 188 KASPTSASSDESDKEEEEKEEGEQT-----DSEKEAKKRKKHKKDKKKKKKKSKYEEEEE 242
           K        +   K E++ EE E+        +KE ++R   +K  K+ ++ +K  EE++
Sbjct: 59  KKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118

Query: 243 KEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           K+  E     K+A + K   + + ++K K
Sbjct: 119 KQAEEA--KAKQAAEAKAKAEAEAEKKAK 145

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 188 KASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGE 247
                   SD+    E  + E E  +     K++ K +++K+K++K+ + E +EEK+  +
Sbjct: 245 SDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304

Query: 248 QT-------------DSEKEAKKRKKHKKDKKKRKKK 271
           +                +++A+ RKK ++ ++  KKK
Sbjct: 305 KLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKK 341

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 200 DKEEEEKEEGEQTDSEKEAK-KRKKHKKDKKKKKKKSKY-------EEEEEKEEGEQTDS 251
            +EE E   G +  ++K  K   K  KK +++KK+K K        EEEEE+E+ ++ + 
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 252 EKEAKKRKKHKKDKKKRKKKS 272
           ++E ++  + +K++++ KKK 
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 177 LKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSE----KEAKKRKKHKKDKKKKK 232
                K  +           ++  +E+++K+E  + + +    KE  K K+  K+K+K+K
Sbjct: 91  KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150

Query: 233 KKSKYEE-EEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
           +K   E  + E+E+  +    K   K+   KK   K+K+  
Sbjct: 151 EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPP 191

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 18/88 (20%)

Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           EL  +++ +AK+  K       SD  D EEEE+EE E+ + E+E +              
Sbjct: 836 ELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEE-------------- 881

Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKH 261
               EEEEE+EE E+  S +  + R+K 
Sbjct: 882 ----EEEEEEEENEEPLSLEWPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 178  KSKLKAKE-KRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSK 236
            +   KA E K+KA      +DE+ K  E K++ ++    +EAKK  + KK ++ KK    
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539

Query: 237  YEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
             + EE+K+  E   +E+  K  +K K ++ K+ ++
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
           K K  A+ K+KA   + +++E+  + E      +  +E EAK   +  K + + K K++ 
Sbjct: 162 KLKAAAEAKKKAEEAAKAAEEAKAKAEAAA--AKKKAEAEAKAAAEKAKAEAEAKAKAEK 219

Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKR 268
           + E   EE    + +K A K K  K     +
Sbjct: 220 KAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250

Length = 387

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           EL  K     K ++KA     ++D+   E  +K++  +   +       K  K   + +K
Sbjct: 221 ELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQK 280

Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
           +     E EK + E   +++EA K K HK    K++ K+
Sbjct: 281 R-----EIEKAQIEIKKNDEEALKAKDHKAFDLKQESKA 314

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
            +K KA+ + K +  +A    ++ +++ + E     +  EAKK K   +   K   ++K 
Sbjct: 144 AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAE-AAKKAAAEAKK-KAEAEAAAKAAAEAKK 201

Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           + E E ++    +++K+A    K    K   + K
Sbjct: 202 KAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235

Length = 387

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 203 EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHK 262
           E E E+   T+ E E KK+K+ K  +K+ KK    ++E + +   Q  S+     +K  K
Sbjct: 5   ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64

Query: 263 KDKKK 267
           K +K+
Sbjct: 65  KSRKR 69

Length = 1066

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 197 DESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEA- 255
            E D++ EE EE +  +    +KK KK KK K KK    K + +   ++ + +D + E  
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSG-DDSDDSDIDGEDS 372

Query: 256 -----KKRKKHKKDKKK 267
                 K++K  K ++ 
Sbjct: 373 VSLVTAKKQKEPKKEEP 389

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 18/77 (23%), Positives = 40/77 (51%)

Query: 195 SSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKE 254
           S +E ++E  +K  G +    +  +K  + KK KK+ K + K ++E ++EE  + + E +
Sbjct: 407 SDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAK 466

Query: 255 AKKRKKHKKDKKKRKKK 271
            +K       + ++ +K
Sbjct: 467 VEKVANKLLKRSEKAQK 483

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/94 (20%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
           +   + K+K+K  P     D   K EE KE+    + EKE +K+ +  +D++++KK+ + 
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPK-EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169

Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
             +   ++  +     + K+  + +K ++  ++ 
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKY 237
             K K + K K  P     ++  K EE ++  E+   E+   + K   K   KKK  +K 
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV--RAKSRPKKPPKKKPPNKK 187

Query: 238 EEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           +E  E+E+  Q   E    K ++   ++++ K++
Sbjct: 188 KEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 178  KSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR----KKHKKDKKKKKK 233
            +++++   K         ++E+ K EE K + E+    +E KK+    KK + ++KKK +
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650

Query: 234  KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
            + K  EEE K +  +   + E  K+K  +  K +  +K
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688

Length = 2084

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 184 KEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE 241
           KE  K  P     +E ++++EE+E+    + E + ++ K+ KK K KK K++  E E 
Sbjct: 29  KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 177 LKSKLKAKEKRKASPTSA-SSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKS 235
           L  KLK       S +S    +E+ KEE ++E  E+  +E E     + +++ K +   +
Sbjct: 20  LLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAA 79

Query: 236 KYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
              EE  +       + + A+       +   R+ K+
Sbjct: 80  APAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKA 116

Length = 746

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 182  KAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRK---KHKKDKKKKKKKSKYE 238
            KA+E +KA            EEE+K + E+    +EAK +    K  +++KKK ++ K +
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641

Query: 239  EEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
            E EEK++ E+    +E  K K  ++ KK  + K
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 183 AKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEE 242
            + +++  P +    E  K+ E++ E  +     E + R+K  + +   +K +K  E+  
Sbjct: 53  NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE-QARQKELEQRAAAEKAAKQAEQAA 111

Query: 243 KEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           K+  E+    +EAK   K   + K + + 
Sbjct: 112 KQAEEKQKQAEEAK--AKQAAEAKAKAEA 138

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 178 KSKLKAKEKRKASPTSASSDESDKEEEEKEE-----------GEQTDSEKEAKKRKKHKK 226
           K     K+ ++     A   +SD  ++E  E            +  + E +       K 
Sbjct: 253 KKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKP 312

Query: 227 DKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
           + ++ +   + EEE+ +EEG  +   K+ KK K  K    K    S
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 157 VDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGE-----Q 211
            D++ + +    +   +  ++ S  K+    ++SP +++SD+  K+++ K         +
Sbjct: 377 YDQIEKEMDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAE 436

Query: 212 TDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEK 253
           +  + E    KK KK++KK + KS  +   + + G + +S K
Sbjct: 437 SIPDDEEDAPKKGKKNQKKGRDKSS-KVPSDSKAGGKKESVK 477

Length = 803

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 197 DESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEE 242
           +E  +E++E+EE      E+  ++ +K +K KK KK K    E E 
Sbjct: 41  EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 174 ELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKK 233
           EL + SK +  EK K       S  S  EEEE  + E     +E  K +  +    + ++
Sbjct: 12  ELGVSSK-ELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70

Query: 234 KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
           ++K E        E  ++   A+   +  +D+  R  +
Sbjct: 71  EAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAE 108

Length = 746

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 173 NELVLKSKLKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKK 232
           N+L L +  K  E+ K S T  S D+  ++E  KE  ++     +     K + D  ++ 
Sbjct: 342 NDLTLLALTKLYEEVK-SNTDLSGDK--RQELLKEYNKKLQDYTKKLGEVKDETDASEEA 398

Query: 233 KKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKK 267
           +    EE+ ++EE E+   E+  + ++K +KD++K
Sbjct: 399 EAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433

Length = 434

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 193 SASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSE 252
           S   +    +EEE E+  Q +   + KKR K K  K+  KKK K      K+       +
Sbjct: 61  SEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKK------KDPTAAKSPK 114

Query: 253 KEAKKRKKHKKDKKKRK 269
             A + KK  +      
Sbjct: 115 AAAPRPKKKSERISWAP 131

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 214 SEKEAKKRKKHK-KDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
            +K+AKK KK K K +K+ +K +   ++E K+  E+  +EK  + R+ +++ + + ++K
Sbjct: 13  DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71

This domain, found in various prokaryotic proteins, has no known function. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0879|consensus	177		100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0111|consensus	298		100.0
KOG0881|consensus	164		100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0883|consensus	518		100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0882|consensus	558		100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
KOG0884|consensus	161		100.0
KOG0865|consensus	167		100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0885|consensus	439		100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0415|consensus	479		100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0882|consensus	558		97.76
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.43
PRK00969	508	hypothetical protein; Provisional	96.37
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.35
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.31
PRK00969	508	hypothetical protein; Provisional	96.0
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	95.04
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.53
KOG2572|consensus	498		88.21
PF04126	120	Cyclophil_like: Cyclophilin-like; InterPro: IPR007	84.66
PF06138	130	Chordopox_E11: Chordopoxvirus E11 protein; InterPr	82.89
KOG2270|consensus	520		80.64

>KOG0546|consensus

Probab=100.00  E-value=9e-67  Score=476.11  Aligned_cols=177  Identities=69%  Similarity=1.128  Sum_probs=174.2

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||.|++.++|||||+||.|+||+||+||++||||+.|.+.++++.++|+|+.|||||++|||||||++.++|+
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt   86 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT   86 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence            48999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ||+||||..|+||+|.++|+++|||||||.||||||||||||+.++|||||.|||||+||.|++||+.|+++.||..++|
T Consensus        87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP  166 (372)
T KOG0546|consen   87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP  166 (372)
T ss_pred             CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCeEEeEeeeeccccc
Q psy17824        164 LQDVRVVKCNELVLKSK  180 (272)
Q Consensus       164 ~~~i~I~~cg~l~~~~~  180 (272)
                      +.+|+|.+||+|+....
T Consensus       167 ~~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  167 LADVVISDCGELVKKSK  183 (372)
T ss_pred             ccceEeccccccccccc
Confidence            99999999999998876

>KOG0880|consensus

Probab=100.00  E-value=6.3e-56  Score=374.83  Aligned_cols=170  Identities=57%  Similarity=0.958  Sum_probs=163.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhc-ccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCT-GEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~-g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ...+|||||.+++...|||+|.||+.++|+||+||.+||+ +.+|.|        |.|+.||||+|||||||||++.++|
T Consensus        38 vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~g  109 (217)
T KOG0880|consen   38 VTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDG  109 (217)
T ss_pred             ceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCC
Confidence            3568999999999999999999999999999999999998 777777        9999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +|+.+|||..|+||||.|.|+++|.|||||.|||+||||||||+...|||||.|+|||+|++||+||.+|+.+.||++++
T Consensus       110 tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dk  189 (217)
T KOG0880|consen  110 TGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDK  189 (217)
T ss_pred             CCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEeEeeeecccccc
Q psy17824        163 PLQDVRVVKCNELVLKSKL  181 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~~~~  181 (272)
                      |+++|+|.+||.|......
T Consensus       190 P~e~v~I~~~g~l~~~~~~  208 (217)
T KOG0880|consen  190 PLEDVVIANCGELPVEYLE  208 (217)
T ss_pred             ccccEEEeecCcccccchh
Confidence            9999999999999765443

>KOG0879|consensus

Probab=100.00  E-value=1.6e-53  Score=340.79  Aligned_cols=170  Identities=55%  Similarity=0.898  Sum_probs=163.0

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|.|||||+|++.++|||.|+||.|++|.|++||.+.|||+.-.   .+.+.-|++++|||||++|||||||+..++|
T Consensus         8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~---~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG   84 (177)
T KOG0879|consen    8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRK---DGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG   84 (177)
T ss_pred             CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccccc---CCccccccccchHHHhhhheeccCceecCCC
Confidence            5799999999999999999999999999999999999999997632   2367789999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +|-.+|||..|+||+|.++|..+|+|||||+|+++||.|||||+....|||+.|+|||+|++|+.++++|+++|+-.|++
T Consensus        85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk  164 (177)
T KOG0879|consen   85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK  164 (177)
T ss_pred             ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEeEeeee
Q psy17824        163 PLQDVRVVKCNEL  175 (272)
Q Consensus       163 P~~~i~I~~cg~l  175 (272)
                      |.-+|.|+.||++
T Consensus       165 PKl~v~i~qCGem  177 (177)
T KOG0879|consen  165 PKLPVVIVQCGEM  177 (177)
T ss_pred             CCCcEEEeecccC
Confidence            9999999999975

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=9.7e-51  Score=361.55  Aligned_cols=177  Identities=38%  Similarity=0.592  Sum_probs=162.2

Q ss_pred             CCCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecC-ceeeecCccCC
Q psy17824          2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKG-FMIQSGDFSVG   80 (272)
Q Consensus         2 ~~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~-f~iqgGd~~~~   80 (272)
                      ...+|+|||||.|++.++|+|+|+||.+.||.||+||+.||+|..+.+..++...+|+|+.||||+++ ||||+||+.. 
T Consensus        49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-  127 (249)
T PTZ00221         49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-  127 (249)
T ss_pred             CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence            35789999999999999999999999999999999999999998877655555667999999999986 8999999742 


Q ss_pred             CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC
Q psy17824         81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM  160 (272)
Q Consensus        81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~  160 (272)
                         .+.++||.+|.+|++.+.|+.+|+|+|++.++++|||||||||.++|+||+.|+|||+|++||+||++|+.++++.+
T Consensus       128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~  204 (249)
T PTZ00221        128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV  204 (249)
T ss_pred             ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence               34567899999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CCCccCeEEeEeeeecccccch
Q psy17824        161 SRPLQDVRVVKCNELVLKSKLK  182 (272)
Q Consensus       161 ~~P~~~i~I~~cg~l~~~~~~~  182 (272)
                      ++|..+|+|.+||+|..+-+..
T Consensus       205 grP~~~V~I~~Cgvl~~~~p~~  226 (249)
T PTZ00221        205 GRPLLPVTVSFCGALTGEKPPG  226 (249)
T ss_pred             CCCCCCeEEEECeEecCCCCCc
Confidence            9999999999999998776543

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=5.7e-50  Score=338.65  Aligned_cols=164  Identities=59%  Similarity=0.990  Sum_probs=154.7

Q ss_pred             CeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC
Q psy17824          6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG   85 (272)
Q Consensus         6 p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg   85 (272)
                      |+|||||.++++++|+|+|+||.+.||.+|+||+.||+|..|.+.   +..+|+++.||||+|+|+|||||+..+++.++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~   77 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG   77 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence            899999999999999999999999999999999999987655432   34589999999999999999999887888899


Q ss_pred             CccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824         86 ESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ  165 (272)
Q Consensus        86 ~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~  165 (272)
                      .++||..|++|++.+.|+.+|+|+|++.++++++|||||||+++|+||+.|+|||+|++|||||++|++++++ +++|..
T Consensus        78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~  156 (164)
T cd01926          78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK  156 (164)
T ss_pred             CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence            9999999999988999999999999999999999999999999999999999999999999999999999998 899999


Q ss_pred             CeEEeEee
Q psy17824        166 DVRVVKCN  173 (272)
Q Consensus       166 ~i~I~~cg  173 (272)
                      +|+|.+||
T Consensus       157 ~i~I~~cG  164 (164)
T cd01926         157 KVVIADCG  164 (164)
T ss_pred             CeEEEECC
Confidence            99999997

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=2.6e-49  Score=340.12  Aligned_cols=170  Identities=58%  Similarity=0.966  Sum_probs=158.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||++++++.|+|+|+||.+.||.+|+||+.||+|.....  .++.++|+|+.||||+|+|+|||||+..+++.
T Consensus        14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~   91 (183)
T PTZ00060         14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT   91 (183)
T ss_pred             CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence            5899999999999999999999999999999999999998765321  23678999999999999999999998878889


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++.++||..+++|.+.+.|..+|+|+|++.++++++||||||+.++|+||+.|+|||+|++|||||++|+..++ .+++|
T Consensus        92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P  170 (183)
T PTZ00060         92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYP  170 (183)
T ss_pred             CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCC
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999988 46899


Q ss_pred             ccCeEEeEeeeec
Q psy17824        164 LQDVRVVKCNELV  176 (272)
Q Consensus       164 ~~~i~I~~cg~l~  176 (272)
                      ..+|+|.+||+|.
T Consensus       171 ~~~v~I~~cg~~~  183 (183)
T PTZ00060        171 KKPVVVTDCGELQ  183 (183)
T ss_pred             cCCeEEEEeEEcC
Confidence            9999999999983

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=2.3e-49  Score=341.14  Aligned_cols=170  Identities=52%  Similarity=0.817  Sum_probs=156.9

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||.++++++|+|+|+||.+.||.||+||+.||+|....   .+....|++|.||||+++|+|||||+..+++
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            4579999999999999999999999999999999999999875321   0122349999999999999999999888889


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEe-cCHHHHHHHhcCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVV-SGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi-~G~dVl~~I~~~~~d~~~  161 (272)
                      .++.++|+..|++|++.+.|..+|+|+|++.++++++||||||+.++|+||++|+|||+|+ +||+||++|+.++++.++
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~  172 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN  172 (186)
T ss_pred             CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 799999999999999999


Q ss_pred             CCccCeEEeEeeee
Q psy17824        162 RPLQDVRVVKCNEL  175 (272)
Q Consensus       162 ~P~~~i~I~~cg~l  175 (272)
                      +|..+|+|.+||++
T Consensus       173 ~P~~~i~I~~cG~~  186 (186)
T PLN03149        173 RPKLACVISECGEM  186 (186)
T ss_pred             CCcCCeEEEeCEeC
Confidence            99999999999985

>KOG0111|consensus

Probab=100.00  E-value=1.4e-49  Score=341.53  Aligned_cols=165  Identities=55%  Similarity=0.934  Sum_probs=161.0

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+||+||.|++...|||++.|..|+.|+|++||.+||+|+.|+|        |.||+||||||.||+|||||+.++|
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence            46899999999999999999999999999999999999999999998        9999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +||.||||..|.||+|.|+|..+|+|||||+|+|+|||||||++....|||+.|+|||.|++||+||++|+++.+ ..+.
T Consensus       206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgk  284 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGK  284 (298)
T ss_pred             CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997 6799


Q ss_pred             CccCeEEeEeeeec
Q psy17824        163 PLQDVRVVKCNELV  176 (272)
Q Consensus       163 P~~~i~I~~cg~l~  176 (272)
                      |.+.|.|..||+|.
T Consensus       285 p~qkv~i~~cge~~  298 (298)
T KOG0111|consen  285 PQQKVKIVECGEIE  298 (298)
T ss_pred             cceEEEEEeccccC
Confidence            99999999999873

>KOG0881|consensus

Probab=100.00  E-value=5.2e-48  Score=305.78  Aligned_cols=154  Identities=45%  Similarity=0.806  Sum_probs=147.0

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      +.|.|+++     |+.|.|++|||-..||.||.||..|+           +.+||+|+.||||+++|||||||+ +++|+
T Consensus         8 q~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa-----------rrgYYn~v~FHRii~DFmiQGGDP-TGTGR   70 (164)
T KOG0881|consen    8 QPPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA-----------RRGYYNGVIFHRIIKDFMIQGGDP-TGTGR   70 (164)
T ss_pred             CCCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH-----------hcccccceeeeehhhhheeecCCC-CCCCC
Confidence            56788887     99999999999999999999999999           789999999999999999999996 79999


Q ss_pred             CCCccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        84 gg~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      ||.||||..|+||-. .|.|..+|+|+|||.|||+|||||||||++.+||||.|++||||+.||+|+.+|..+.||.++|
T Consensus        71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DR  150 (164)
T KOG0881|consen   71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDR  150 (164)
T ss_pred             CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCC
Confidence            999999999999965 7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEeEeee
Q psy17824        163 PLQDVRVVKCNE  174 (272)
Q Consensus       163 P~~~i~I~~cg~  174 (272)
                      |..+|+|..+-.
T Consensus       151 Pi~~~kIika~~  162 (164)
T KOG0881|consen  151 PIDEVKIIKAYP  162 (164)
T ss_pred             CccceeeEeeec
Confidence            999999997643

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=4.7e-46  Score=313.26  Aligned_cols=154  Identities=44%  Similarity=0.717  Sum_probs=145.0

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|+.|+|+|+||.+.||+||+||+.||           +.++|+|+.||||+|+|+|||||+ .+++.++.++||..|+
T Consensus         4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~rv~~~~~iq~Gd~-~~~g~~~~~~~g~~~~   71 (159)
T cd01923           4 LHTNKGDLNLELHCDKAPKACENFIKLC-----------KKGYYDGTIFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFK   71 (159)
T ss_pred             EEEccccEEEEEeCCCChHHHHHHHHHH-----------hcCccCCcEEEEEeCCcEEEeccc-CCCCCCCccccCCccC
Confidence            3489999999999999999999999999           568999999999999999999997 4778889999999999


Q ss_pred             CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824         95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN  173 (272)
Q Consensus        95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg  173 (272)
                      +|.. .+.|+.+|+|+|++.++++++||||||++++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+|+
T Consensus        72 ~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~  151 (159)
T cd01923          72 DEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTS  151 (159)
T ss_pred             cccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeE
Confidence            8854 688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccc
Q psy17824        174 ELVLKSK  180 (272)
Q Consensus       174 ~l~~~~~  180 (272)
                      ++.++++
T Consensus       152 i~~dpf~  158 (159)
T cd01923         152 VFVDPFE  158 (159)
T ss_pred             EEeCCCC
Confidence            9998875

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-45  Score=307.86  Aligned_cols=149  Identities=45%  Similarity=0.688  Sum_probs=135.0

Q ss_pred             EECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC
Q psy17824         13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT   92 (272)
Q Consensus        13 ~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~   92 (272)
                      ++..|+.|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+..+++.+|.+   .+
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~-----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~   67 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLV-----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PP   67 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHH-----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CC
Confidence            356699999999999999999999999999           6889999999999999999999998777888874   78


Q ss_pred             CCCCCcCcCCCc--ceeEeeeccC-CCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC----CCCcc
Q psy17824         93 FEDENFELKHDE--PFLLSMANRG-KDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQ  165 (272)
Q Consensus        93 ~~de~~~~~h~~--~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~----~~P~~  165 (272)
                      |++|++...|.+  +|+|||||.+ |++|+||||||+.++||||+.|+|||+|++|||||++|++..+...    ..|..
T Consensus        68 f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~  147 (158)
T COG0652          68 FKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPAD  147 (158)
T ss_pred             CcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCC
Confidence            999999988888  9999999999 9999999999999999999999999999999999999999888753    35667


Q ss_pred             CeEEeEeeee
Q psy17824        166 DVRVVKCNEL  175 (272)
Q Consensus       166 ~i~I~~cg~l  175 (272)
                      +++|....++
T Consensus       148 ~~~i~~~~~~  157 (158)
T COG0652         148 PVKILSVKIV  157 (158)
T ss_pred             CeEEeeeeee
Confidence            7777765554

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=3.4e-45  Score=310.10  Aligned_cols=155  Identities=43%  Similarity=0.656  Sum_probs=141.2

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCC----
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYG----   90 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g----   90 (272)
                      ..|+.|+|+|+||.+.||+||+||+.||           +.++|+|+.||||+++|||||||+. +++.++.++|+    
T Consensus         2 l~Ts~G~i~ieL~~~~aP~t~~nF~~L~-----------~~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~   69 (166)
T cd01921           2 LETTLGDLVIDLFTDECPLACLNFLKLC-----------KLKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYG   69 (166)
T ss_pred             cEeccCCEEEEEcCCCCCHHHHHHHHHH-----------hcCCcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccc
Confidence            3589999999999999999999999999           5679999999999999999999974 66777777765    


Q ss_pred             ---CCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCC-CCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824         91 ---GTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQP-APHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ  165 (272)
Q Consensus        91 ---~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~-~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~  165 (272)
                         ..|.+|. ..+.|+.+|+|+||+.++++++|||||||.+ +|+||+.|+|||+|++||+||++|+.++++.+++|..
T Consensus        70 ~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~  149 (166)
T cd01921          70 RQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLK  149 (166)
T ss_pred             ccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence               3466665 4788999999999999999999999999985 8999999999999999999999999999999999999


Q ss_pred             CeEEeEeeeecccccc
Q psy17824        166 DVRVVKCNELVLKSKL  181 (272)
Q Consensus       166 ~i~I~~cg~l~~~~~~  181 (272)
                      +|+|.+|++|.++|+.
T Consensus       150 ~i~I~~~~i~~~pf~~  165 (166)
T cd01921         150 DIRIKHTHILDDPFPD  165 (166)
T ss_pred             CeEEEEEEEECCCCCC
Confidence            9999999999999874

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=2.8e-45  Score=305.11  Aligned_cols=145  Identities=53%  Similarity=0.867  Sum_probs=137.0

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|++|+|+|+||.+.||+||+||+.||           +.+||+|+.||||++||+|||||+ .+++.++.++|+..|+
T Consensus         2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~~~~~~   69 (148)
T cd01927           2 IHTTKGDIHIRLFPEEAPKTVENFTTHA-----------RNGYYNNTIFHRVIKGFMIQTGDP-TGDGTGGESIWGKEFE   69 (148)
T ss_pred             eEeccccEEEEEeCCCCcHHHHHHHHHh-----------hcCCcCCcEEEEEcCCcEEEeccc-CCCCCCCCcccCCccc
Confidence            3589999999999999999999999999           567999999999999999999997 5778889999999999


Q ss_pred             CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824         95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK  171 (272)
Q Consensus        95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~  171 (272)
                      +|.. .+.|..+|+|+|++.++++++|||||||+++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+
T Consensus        70 ~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          70 DEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            9976 7899999999999999999999999999999999999999999999999999999999998999999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=6.1e-45  Score=304.70  Aligned_cols=147  Identities=52%  Similarity=0.871  Sum_probs=138.3

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|+.|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|+|||||+ .+++.++.++|+.+|+
T Consensus         5 l~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~rv~~~f~iq~Gd~-~~~g~g~~~~~~~~~~   72 (153)
T cd01928           5 LHTNLGDIKIELFCDDCPKACENFLALC-----------ASGYYNGCIFHRNIKGFMVQTGDP-TGTGKGGESIWGKKFE   72 (153)
T ss_pred             EEEccccEEEEEcCCCCcHHHHHHHHHH-----------hcCccCCcEEEEeCCCCEEEcccc-CCCCCCCCccCCCccc
Confidence            3489999999999999999999999999           567999999999999999999997 4678888899999999


Q ss_pred             CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824         95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN  173 (272)
Q Consensus        95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg  173 (272)
                      +|.. .+.|+.+|+|+|++.++++++|||||+++++|+||+.|+|||+|++||+||++|+.++++.+++|..+|+|.+|.
T Consensus        73 ~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          73 DEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             cccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            9876 678999999999999999999999999999999999999999999999999999999999999999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2.8e-44  Score=298.54  Aligned_cols=142  Identities=48%  Similarity=0.838  Sum_probs=133.9

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|+.|+|+|+||.+.||.+|+||+.||           +.+||+++.||||+++|+|||||+ .+++.++.++|+.+|++
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~~~~~~~~~~~~~   70 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELA-----------KRGYYNGTIFHRLIKDFMIQGGDP-TGTGRGGASIYGKKFED   70 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEcCCcEEEeccc-CCCCCCcccccCCCccc
Confidence            589999999999999999999999999           568999999999999999999997 46778888999999999


Q ss_pred             CC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEe
Q psy17824         96 EN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVV  170 (272)
Q Consensus        96 e~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~  170 (272)
                      |. ..+.|..+|+|+|++.++++++||||||++++|+||+.|+|||+|++|||||++|+.++++ +++|..+|+|.
T Consensus        71 e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~  145 (146)
T cd01922          71 EIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL  145 (146)
T ss_pred             ccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence            84 5789999999999999999999999999999999999999999999999999999999998 88999999996

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0883|consensus

Probab=100.00  E-value=2.3e-44  Score=329.82  Aligned_cols=154  Identities=44%  Similarity=0.723  Sum_probs=148.9

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|+.|.|.|||++|.+|.+|+||+.||           +.|||+|+.|||.|.+|||||||| +|+|.||.||||.+|.|
T Consensus       283 ~Tn~G~lNlELhcd~~P~aceNFI~lc-----------~~gYYnnt~FHRsIrnFmiQGGDP-TGTG~GGeSiWgKpFkD  350 (518)
T KOG0883|consen  283 VTNHGPLNLELHCDYAPRACENFITLC-----------KNGYYNNTIFHRSIRNFMIQGGDP-TGTGRGGESIWGKPFKD  350 (518)
T ss_pred             eccCCceeeEeecCcchHHHHHHHHHH-----------hcccccchHHHHHHHHHeeeCCCC-CCCCCCCccccCCcccc
Confidence            488999999999999999999999999           799999999999999999999996 79999999999999999


Q ss_pred             CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEeee
Q psy17824         96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE  174 (272)
Q Consensus        96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg~  174 (272)
                      |.. .|.|+.+|+|||||+|+|+|||||||+..++.|||+.|+|||+|+.|++||.+|+.+++|+.++|..+|+|...-|
T Consensus       351 Ef~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V  430 (518)
T KOG0883|consen  351 EFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV  430 (518)
T ss_pred             ccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence            965 7999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccc
Q psy17824        175 LVLKSKL  181 (272)
Q Consensus       175 l~~~~~~  181 (272)
                      +++++..
T Consensus       431 FVdPfeE  437 (518)
T KOG0883|consen  431 FVDPFEE  437 (518)
T ss_pred             eeCcHHH
Confidence            9999863

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=7.2e-43  Score=297.17  Aligned_cols=155  Identities=40%  Similarity=0.625  Sum_probs=144.4

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|++|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++|||||||+ .+++.++.++||..|.+
T Consensus        11 ~Ts~G~i~ieL~~~~~P~t~~nF~~L~-----------~~~~Y~~~~f~Rvi~~f~iQgGd~-~~~g~g~~s~~g~~~~~   78 (171)
T cd01925          11 KTTAGDIDIELWSKEAPKACRNFIQLC-----------LEGYYDNTIFHRVVPGFIIQGGDP-TGTGTGGESIYGEPFKD   78 (171)
T ss_pred             EEccccEEEEEeCCCChHHHHHHHHHH-----------hcCCCCCCEEEEEcCCcEEEcccc-CCCCccCcccCCCccCc
Confidence            489999999999999999999999999           567999999999999999999996 47788899999999998


Q ss_pred             CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec-CHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824         96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCN  173 (272)
Q Consensus        96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~-G~dVl~~I~~~~~d~~~~P~~~i~I~~cg  173 (272)
                      |.. .+.|+.+|+|+|++.++++++||||||++++|+||+.|+|||+|+. +|++|++|+.++++.+++|..+|+|.+|+
T Consensus        79 E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~  158 (171)
T cd01925          79 EFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVE  158 (171)
T ss_pred             ccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEE
Confidence            865 5789999999999999999999999999999999999999999994 68899999999999999999999999999


Q ss_pred             eecccccch
Q psy17824        174 ELVLKSKLK  182 (272)
Q Consensus       174 ~l~~~~~~~  182 (272)
                      ++.++++.-
T Consensus       159 i~~~pf~~~  167 (171)
T cd01925         159 VLENPFDDI  167 (171)
T ss_pred             EEcCCchhh
Confidence            999888754

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0882|consensus

Probab=100.00  E-value=1.1e-43  Score=330.66  Aligned_cols=157  Identities=50%  Similarity=0.845  Sum_probs=148.2

Q ss_pred             CeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC
Q psy17824          6 PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG   85 (272)
Q Consensus         6 p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg   85 (272)
                      +.+.-+-+|..|++|+|.|.||++.||+||+||...|           ++|||+|..|||||+|||||+||| .|+|+||
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~-----------rngyy~~~~fhriik~fmiqtgdp-~g~gtgg  467 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS-----------RNGYYDNHTFHRIIKGFMIQTGDP-LGDGTGG  467 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhccc-----------cCccccCcchHHhhhhheeecCCC-CCCCCCC
Confidence            3444566788899999999999999999999998888           789999999999999999999997 7999999


Q ss_pred             CccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCc
Q psy17824         86 ESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPL  164 (272)
Q Consensus        86 ~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~  164 (272)
                      .||||..|+||.. .|.|+++.+|||||.|+|+||||||||+-++|||||.|+|||||+.||+||++|+++.|+.++||+
T Consensus       468 esiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~  547 (558)
T KOG0882|consen  468 ESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPY  547 (558)
T ss_pred             cccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCC
Confidence            9999999999976 799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEeEeee
Q psy17824        165 QDVRVVKCNE  174 (272)
Q Consensus       165 ~~i~I~~cg~  174 (272)
                      .+|.|.+..+
T Consensus       548 e~v~iinisv  557 (558)
T KOG0882|consen  548 EDVKIINISV  557 (558)
T ss_pred             CceeEEEEec
Confidence            9999998754

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2.8e-41  Score=291.71  Aligned_cols=153  Identities=30%  Similarity=0.449  Sum_probs=132.5

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+++|.|+     |+.|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++||||||++....+ 
T Consensus        27 ~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~-   89 (190)
T PRK10903         27 GDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV-----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ-   89 (190)
T ss_pred             CCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC-
Confidence            34555544     89999999999999999999999999           67899999999999999999999753321 


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCCC-----CCcEEEEEecCHHHHHHHhcCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLDG-----VHVVFGHVVSGQNVVSHIENLPV  157 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~-----~~~VFG~Vi~G~dVl~~I~~~~~  157 (272)
                        ...++.+|.+|.....|+.+|+|+|++.+ +++++|||||++.+.++||+     .|+|||+|++|||||++|+.+++
T Consensus        90 --~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~  167 (190)
T PRK10903         90 --QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  167 (190)
T ss_pred             --CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCC
Confidence              12345678888666667889999999865 89999999999999999984     89999999999999999999999


Q ss_pred             CC----CCCCccCeEEeEeeee
Q psy17824        158 DK----MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       158 d~----~~~P~~~i~I~~cg~l  175 (272)
                      +.    .++|..+|+|.+|+++
T Consensus       168 ~~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        168 HDVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCCCcccCCeEEEEEEEe
Confidence            76    4799999999999886

>KOG0884|consensus

Probab=100.00  E-value=6.3e-42  Score=269.74  Aligned_cols=154  Identities=44%  Similarity=0.703  Sum_probs=145.3

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|..|+|.||||.+.+|++|+||+.||           -..||++|.|||-+++||+|+||+ ...|+||.||||..|+
T Consensus         5 lht~~gdikiev~~e~tpktce~~l~~~-----------~~~~~n~~~~~~~~~~f~v~~~~~-~~tgrgg~siwg~~fe   72 (161)
T KOG0884|consen    5 LHTDVGDIKIEVFCERTPKTCENFLALC-----------ASDYYNGCIFHRNIKGFMVQTGDP-THTGRGGNSIWGKKFE   72 (161)
T ss_pred             EeeccCcEEEEEEecCChhHHHHHHHHh-----------hhhhccceeecCCCCCcEEEeCCC-CCCCCCCccccCCcch
Confidence            4588999999999999999999999999           467999999999999999999996 6889999999999999


Q ss_pred             CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC-CCCccCeEEeEe
Q psy17824         95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM-SRPLQDVRVVKC  172 (272)
Q Consensus        95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~-~~P~~~i~I~~c  172 (272)
                      ||.. .|+|+.+|+|+|||.||++|+||||||.+..||||-.|+|||+||+|+++|+.|+.+++++. .||+.++.|.+.
T Consensus        73 de~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i  152 (161)
T KOG0884|consen   73 DEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI  152 (161)
T ss_pred             HHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence            9976 69999999999999999999999999999999999999999999999999999999999876 699999999999


Q ss_pred             eeeccccc
Q psy17824        173 NELVLKSK  180 (272)
Q Consensus       173 g~l~~~~~  180 (272)
                      .+-.+++.
T Consensus       153 tihanp~a  160 (161)
T KOG0884|consen  153 TIHANPFA  160 (161)
T ss_pred             EEecCcCC
Confidence            88877653

>KOG0865|consensus

Probab=100.00  E-value=3.4e-42  Score=289.63  Aligned_cols=163  Identities=53%  Similarity=0.956  Sum_probs=156.2

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEE---eecCceeeecCccCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR---VVKGFMIQSGDFSVG   80 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~R---vi~~f~iqgGd~~~~   80 (272)
                      .+|+|||||.+.+.++|+++++||.|..|.|++||..||||++|+|        |.++.|||   ++++||+||||++..
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h   73 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH   73 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence            5899999999999999999999999999999999999999988877        99999999   344799999999999


Q ss_pred             CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC
Q psy17824         81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM  160 (272)
Q Consensus        81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~  160 (272)
                      ++++|.+||+..|+||+|.++|..+|+|+|||.||++|+|||||++....|||+.|+|||+|.+||+|+++|+.... .+
T Consensus        74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~  152 (167)
T KOG0865|consen   74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RN  152 (167)
T ss_pred             CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876 78


Q ss_pred             CCCccCeEEeEeeee
Q psy17824        161 SRPLQDVRVVKCNEL  175 (272)
Q Consensus       161 ~~P~~~i~I~~cg~l  175 (272)
                      ++|...|.|.+||+|
T Consensus       153 gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  153 GKTSKKITIADCGQL  167 (167)
T ss_pred             CcccccEEEecCCcC
Confidence            999999999999986

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=4.4e-41  Score=284.35  Aligned_cols=148  Identities=30%  Similarity=0.453  Sum_probs=126.6

Q ss_pred             ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCC
Q psy17824         14 ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTF   93 (272)
Q Consensus        14 v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~   93 (272)
                      +..|+.|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++||||||++..+.+.   ..++.+|
T Consensus         3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~   68 (164)
T PRK10791          3 TFHTNHGDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPI   68 (164)
T ss_pred             EEEEccccEEEEEeCCCCcHHHHHHHHHH-----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCc
Confidence            34599999999999999999999999999           578999999999999999999997544322   2235677


Q ss_pred             CCCCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCC-------C-CCcEEEEEecCHHHHHHHhcCCCCC----C
Q psy17824         94 EDENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLD-------G-VHVVFGHVVSGQNVVSHIENLPVDK----M  160 (272)
Q Consensus        94 ~de~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld-------~-~~~VFG~Vi~G~dVl~~I~~~~~d~----~  160 (272)
                      .+|.....|+.+|+|+||+.+ +++++|||||++.+.++||       + .|+|||+|++||+||++|+.++++.    +
T Consensus        69 ~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~  148 (164)
T PRK10791         69 KNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQ  148 (164)
T ss_pred             CCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccC
Confidence            777544444579999999875 8999999999999988876       3 6999999999999999999999976    3


Q ss_pred             CCCccCeEEeEeeee
Q psy17824        161 SRPLQDVRVVKCNEL  175 (272)
Q Consensus       161 ~~P~~~i~I~~cg~l  175 (272)
                      ++|..+|+|..|.+.
T Consensus       149 ~~P~~~v~I~~~~i~  163 (164)
T PRK10791        149 DVPKEDVIIESVTVS  163 (164)
T ss_pred             CCcCCCeEEEEEEEe
Confidence            699999999999764

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=3.4e-40  Score=276.54  Aligned_cols=142  Identities=35%  Similarity=0.495  Sum_probs=124.4

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|+.|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+|+|||||||+....+.   ..++.++.+
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~-----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~   68 (155)
T cd01920           3 QTSLGDIVVELYDDKAPITVENFLAYV-----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKN   68 (155)
T ss_pred             EecceeEEEEEeCCCCcHHHHHHHHHH-----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccC
Confidence            488999999999999999999999999           578999999999999999999997543322   234567777


Q ss_pred             CCcCcCCCcceeEeeeccC-CCCCccEEEEEcCCCCCCCC-----CCcEEEEEecCHHHHHHHhcCCCCCC----CCCcc
Q psy17824         96 ENFELKHDEPFLLSMANRG-KDTNGSQFFITTQPAPHLDG-----VHVVFGHVVSGQNVVSHIENLPVDKM----SRPLQ  165 (272)
Q Consensus        96 e~~~~~h~~~G~lsm~~~g-~~s~~SqFfItl~~~p~ld~-----~~~VFG~Vi~G~dVl~~I~~~~~d~~----~~P~~  165 (272)
                      |.....|+.+|+|+||+.+ +++++|||||+|.++|+||+     .|+|||+|++||+||++|+.++++.+    +.|..
T Consensus        69 e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~  148 (155)
T cd01920          69 EAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQ  148 (155)
T ss_pred             cccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCC
Confidence            7666667889999999865 89999999999999999995     79999999999999999999999764    58999


Q ss_pred             CeEEeE
Q psy17824        166 DVRVVK  171 (272)
Q Consensus       166 ~i~I~~  171 (272)
                      +|.|..
T Consensus       149 ~v~i~~  154 (155)
T cd01920         149 DVIIES  154 (155)
T ss_pred             CeEEEE
Confidence            998875

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0885|consensus

Probab=100.00  E-value=3.6e-41  Score=307.48  Aligned_cols=163  Identities=37%  Similarity=0.625  Sum_probs=153.7

Q ss_pred             ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCC
Q psy17824         14 ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTF   93 (272)
Q Consensus        14 v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~   93 (272)
                      |..|+.|+|.||||+..||.+|.||++||           -.|||+|+.|||++|||++||||| +++|+||.+|||.+|
T Consensus        16 il~TT~G~I~iELW~kE~P~acrnFiqKO-----------Gegyy~nt~fhrlvp~f~~Qggdp-~~~gtGgesiyg~~f   83 (439)
T KOG0885|consen   16 ILKTTKGDIDIELWAKECPKACRNFIQLC-----------LEGYYDNTEFHRLVPGFLVQGGDP-TGTGTGGESIYGRPF   83 (439)
T ss_pred             EEEeccCceeeeehhhhhhHHHHHHHHHH-----------HhccccCceeeeeccchhcccCCC-CCCCCCccccccccc
Confidence            45699999999999999999999999999           579999999999999999999997 799999999999999


Q ss_pred             CCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec-CHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824         94 EDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVK  171 (272)
Q Consensus        94 ~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~-G~dVl~~I~~~~~d~~~~P~~~i~I~~  171 (272)
                      .+|.. .|.++++|+|+|||.+.+.|||||||||+++|+|++.|+|||+|+. -+..+.+|..+.++.+.||..+-.|.+
T Consensus        84 adE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s  163 (439)
T KOG0885|consen   84 ADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKS  163 (439)
T ss_pred             hhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceee
Confidence            99965 7999999999999999999999999999999999999999999995 788899999999999999999999999


Q ss_pred             eeeecccccchhhhhcc
Q psy17824        172 CNELVLKSKLKAKEKRK  188 (272)
Q Consensus       172 cg~l~~~~~~~~~~~~~  188 (272)
                      |-||.++|.+..++..+
T Consensus       164 ~EV~~npFdDI~pr~~r  180 (439)
T KOG0885|consen  164 VEVLINPFDDIKPRELR  180 (439)
T ss_pred             eEeecCchhhcchhhhh
Confidence            99999999988777543

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=3.9e-39  Score=268.89  Aligned_cols=150  Identities=47%  Similarity=0.743  Sum_probs=130.2

Q ss_pred             EEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC-Cc
Q psy17824          9 YFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG-ES   87 (272)
Q Consensus         9 ~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg-~s   87 (272)
                      ||||.+++  +|+|+|+||++.||.+|+||++||           ..++|+|+.||||+++++||+|++......+. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~-----------~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~   67 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLC-----------TSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS   67 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHH-----------HTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh-----------cccccCCceeecccccceeeeeeccCCCCcccccc
Confidence            78887765  999999999999999999999999           45689999999999999999999754433111 12


Q ss_pred             cCCCCCCCCCc--CcCCCcceeEeeeccC--CCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         88 IYGGTFEDENF--ELKHDEPFLLSMANRG--KDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        88 ~~g~~~~de~~--~~~h~~~G~lsm~~~g--~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ..+.++++|..  .+.| .+|+|+|++.+  +++++|||||+|.++|+||+.|+|||+|++||+||++|+.++++.  +|
T Consensus        68 ~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p  144 (155)
T PF00160_consen   68 TGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RP  144 (155)
T ss_dssp             TTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EB
T ss_pred             cCccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--cc
Confidence            33446888874  4555 89999999876  788999999999999999999999999999999999999999876  99


Q ss_pred             ccCeEEeEeee
Q psy17824        164 LQDVRVVKCNE  174 (272)
Q Consensus       164 ~~~i~I~~cg~  174 (272)
                      ..+|+|.+|||
T Consensus       145 ~~~v~I~~cgv  155 (155)
T PF00160_consen  145 KQDVTISSCGV  155 (155)
T ss_dssp             SSTEEEEEEEE
T ss_pred             CCCeEEEEeEC
Confidence            99999999996

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=4.7e-39  Score=266.02  Aligned_cols=143  Identities=53%  Similarity=0.788  Sum_probs=129.5

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|+.|+|+|+||.+.||.+|+||+.||           ..++|+|+.||||+|+++|||||+....+.+  +.++..+++
T Consensus         3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~-----------~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~   69 (146)
T cd00317           3 DTTKGRIVIELYGDEAPKTVENFLSLA-----------RGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPD   69 (146)
T ss_pred             EeccCcEEEEEcCCCChHHHHHHHHHH-----------hcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCC
Confidence            478899999999999999999999999           4568999999999999999999975443322  456678888


Q ss_pred             CCcCcC-CCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824         96 ENFELK-HDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK  171 (272)
Q Consensus        96 e~~~~~-h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~  171 (272)
                      |..... |+.+|+|+|++.++++++|||||+|.++|+||+.|+|||+|++||+||++|+..+++++++|..+|+|..
T Consensus        70 E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          70 ENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             ccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            887655 8999999999999999999999999999999999999999999999999999999998999999999973

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0415|consensus

Probab=100.00  E-value=3.4e-39  Score=292.94  Aligned_cols=157  Identities=40%  Similarity=0.590  Sum_probs=145.9

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC--
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT--   92 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~--   92 (272)
                      ..|++|+|||.||.+.+|.+|.|||.||           +..||+.|.||-|..||.+|.||| +|+|.||.+|||..  
T Consensus         5 ieTtlGDlvIDLf~~erP~~clNFLKLC-----------k~KYYN~clfh~vq~~f~aQTGDP-tGtG~GG~si~~~lyG   72 (479)
T KOG0415|consen    5 IETTLGDLVIDLFVKERPRTCLNFLKLC-----------KIKYYNFCLFHTVQRDFTAQTGDP-TGTGDGGESIYGVLYG   72 (479)
T ss_pred             EEeecccEEeeeecccCcHHHHHHHHHH-----------hHhhcccceeeeccccceeecCCC-CCCCCCcceeeeeccc
Confidence            4599999999999999999999999999           789999999999999999999997 67999999998743  


Q ss_pred             -----CCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCC-CCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCcc
Q psy17824         93 -----FEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQP-APHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQ  165 (272)
Q Consensus        93 -----~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~-~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~  165 (272)
                           |+.|. ..+.|...|+|||++.|.|.+||||||||++ +..||+.|+|||+|++||++|.+|+.+.+|.+++|++
T Consensus        73 ~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPyk  152 (479)
T KOG0415|consen   73 EQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYK  152 (479)
T ss_pred             ccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccc
Confidence                 55554 3799999999999999999999999999996 6799999999999999999999999999999999999


Q ss_pred             CeEEeEeeeecccccchh
Q psy17824        166 DVRVVKCNELVLKSKLKA  183 (272)
Q Consensus       166 ~i~I~~cg~l~~~~~~~~  183 (272)
                      +|+|.+.-+|.++|+.+.
T Consensus       153 dIRI~HTiiLdDPFddpp  170 (479)
T KOG0415|consen  153 DIRIKHTIILDDPFDDPP  170 (479)
T ss_pred             ceeeeeeEEecCCCCCch
Confidence            999999999999998764

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=5.3e-37  Score=262.14  Aligned_cols=129  Identities=32%  Similarity=0.446  Sum_probs=110.7

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCC-C------------
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGN-G------------   82 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~-g------------   82 (272)
                      .|+.|+|+|+||++.||+||.||+.||           +.+||+++.||||+++|||||||+.... +            
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~   71 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV-----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTI   71 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH-----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccc
Confidence            488999999999999999999999999           6789999999999999999999975331 1            


Q ss_pred             -------CCCCccCCCCCC-----CCCcCcCCCcceeEeeeccC--CCCCccEEEEEcC-------CCCCCCCCCcEEEE
Q psy17824         83 -------TGGESIYGGTFE-----DENFELKHDEPFLLSMANRG--KDTNGSQFFITTQ-------PAPHLDGVHVVFGH  141 (272)
Q Consensus        83 -------~gg~s~~g~~~~-----de~~~~~h~~~G~lsm~~~g--~~s~~SqFfItl~-------~~p~ld~~~~VFG~  141 (272)
                             ..+.++|+..+.     +++..+.|+.+|+|+||+.+  +++++|||||+++       ++|+||+.|+|||+
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~  151 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY  151 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence                   123345554442     45667888899999999987  6999999999998       79999999999999


Q ss_pred             EecCHHHHHHHhcC
Q psy17824        142 VVSGQNVVSHIENL  155 (272)
Q Consensus       142 Vi~G~dVl~~I~~~  155 (272)
                      |++||+||++|+..
T Consensus       152 VveG~dvl~~I~~g  165 (176)
T cd01924         152 VTDGLDILRELKVG  165 (176)
T ss_pred             EecCHHHHHhhcCC
Confidence            99999999999743

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0882|consensus

Probab=97.76  E-value=3.2e-05  Score=73.90  Aligned_cols=144  Identities=22%  Similarity=0.244  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCC----CccCC-CCCCC
Q psy17824         21 RIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGG----ESIYG-GTFED   95 (272)
Q Consensus        21 ~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg----~s~~g-~~~~d   95 (272)
                      -|.|+|+.+-.|..++-|..+|           ..+++++..|.+|...+++|.||.......+|    ++..+ ..|++
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~-----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr  181 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFC-----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR  181 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcC-----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence            8999999999999999999999           68899999999999999999999543333222    12222 11333


Q ss_pred             --CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824         96 --ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN  173 (272)
Q Consensus        96 --e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg  173 (272)
                        .++.++|. ..++.+...-....+-+|+++....+.|..+..|||+|..|.++++.|....++....|..++.|.+..
T Consensus       182 ~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve  260 (558)
T KOG0882|consen  182 TNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE  260 (558)
T ss_pred             cccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence              35567776 456666655555567889999999999999999999999999999999999999999999999999876


Q ss_pred             eec
Q psy17824        174 ELV  176 (272)
Q Consensus       174 ~l~  176 (272)
                      ...
T Consensus       261 lgR  263 (558)
T KOG0882|consen  261 LGR  263 (558)
T ss_pred             hhh
Confidence            554

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.43  E-value=0.012  Score=57.35  Aligned_cols=99  Identities=23%  Similarity=0.365  Sum_probs=65.3

Q ss_pred             eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceee----CcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYL----NIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~----g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      =.+.+||.+. ||.++++|+.+..           .|++.    -.+|-                   +.++..|...+.
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~-----------~G~~~Vd~~tsTfi-------------------~d~~L~g~~~p~  249 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALME-----------DGTFRVDYRTSTFI-------------------SDDSLRGLDKPE  249 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHh-----------CCeEEEeeeecceE-------------------ecccccCccCCc
Confidence            3577787664 7999999999983           33221    11111                   112223444555


Q ss_pred             CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824         96 ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN  154 (272)
Q Consensus        96 e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~  154 (272)
                      |++.  ...+|+|++.|.|..  ....||...+.+. .-.|+|+|+|+.||++|+--..
T Consensus       250 En~~--~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       250 ENIE--KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             cccC--cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence            5543  345999999998754  3568998887653 2359999999999999975543

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.37  E-value=0.012  Score=57.52  Aligned_cols=99  Identities=21%  Similarity=0.332  Sum_probs=65.7

Q ss_pred             eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCcccee----eCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHY----LNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y----~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      =.+.++|.++ ||.++++|+.+..           .|++    .-.+|-                   +.++..|...+.
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~-----------~G~f~Vd~~tstfI-------------------~d~~L~g~~~p~  252 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLE-----------DGTFEVDFETSTFI-------------------ADDRLQGLKIPE  252 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHh-----------CCeEEEeeeecceE-------------------eeccccCccCCc
Confidence            3577788775 7999999999983           3322    112221                   112223444555


Q ss_pred             CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824         96 ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN  154 (272)
Q Consensus        96 e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~  154 (272)
                      |++.  ...+|+|++.+.|..  ....||...+.+. .-.|+|+|+|+.||++|+--..
T Consensus       253 En~~--~R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        253 ENFE--PRRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             cccC--ccccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence            5544  345899999998754  3568998887653 2359999999999999875443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.35  E-value=0.034  Score=54.33  Aligned_cols=130  Identities=22%  Similarity=0.307  Sum_probs=75.7

Q ss_pred             CCCCeEEEEEEECC------ee-ceeEEEEEcCCCChhHHHHHHHHhccc--CCCCccCCccceeeCcEEEEeecCceee
Q psy17824          3 LIRPRCYFDVEISD------IP-LGRIVFELYSDICPITCENFRALCTGE--KGIGKTTGKNLHYLNIVFHRVVKGFMIQ   73 (272)
Q Consensus         3 ~~~p~v~~di~v~~------t~-~G~IvIeL~~d~aP~t~~nF~~L~~g~--~g~g~~~~k~~~Y~g~~f~Rvi~~f~iq   73 (272)
                      .+.|...|||.-.+      .+ ---|.|+||.+.||.||.-|..+. |-  +.+|          -..+|-..++.++-
T Consensus       351 ~Q~P~~TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG----------~L~v~F~~~d~~mF  419 (503)
T TIGR03268       351 KQEPPYTLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT-GLKTKPVG----------RLPVHFAFKEMIMF  419 (503)
T ss_pred             ecCCchHHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc-CCcccccc----------eeEEEEEeCCeeEe
Confidence            35566666653221      11 246889999999999999998876 21  1111          23556666775444


Q ss_pred             ecCccCCCCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEc------CCC-CCCCCCCcEEEEEecCH
Q psy17824         74 SGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT------QPA-PHLDGVHVVFGHVVSGQ  146 (272)
Q Consensus        74 gGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl------~~~-p~ld~~~~VFG~Vi~G~  146 (272)
                      =|+..          ++..+.+||..-.-..+|.|+|-|......|- .-|-|      +|. ..+++ .-++|+|++++
T Consensus       420 k~~~~----------~~k~LiPEN~P~~~V~ag~IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~  487 (503)
T TIGR03268       420 KGNKE----------LAKGLIPENTPEDKVEAGVIGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGM  487 (503)
T ss_pred             ccCch----------hccccCCCCCCCCccccceEeeechhhhcCce-EEEEccCCcccCCCCCCccC-cceEEEecCCh
Confidence            33321          22345566665556668888887754221110 11222      232 23445 34789999999


Q ss_pred             HHHHHHhcC
Q psy17824        147 NVVSHIENL  155 (272)
Q Consensus       147 dVl~~I~~~  155 (272)
                      +.|..|...
T Consensus       488 e~Lk~~KeG  496 (503)
T TIGR03268       488 ERLKGLKEG  496 (503)
T ss_pred             hHhcccccC
Confidence            999887653

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.014  Score=55.49  Aligned_cols=103  Identities=23%  Similarity=0.375  Sum_probs=66.2

Q ss_pred             eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCCCCcC
Q psy17824         20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFE   99 (272)
Q Consensus        20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~   99 (272)
                      =.+.++|... +|.++++|++|...  |.     -...|.-.+|-                   +.++..+...+.+++.
T Consensus       203 Ty~eve~s~n-sP~saEH~lalmed--G~-----lri~~~tntfi-------------------s~~~lq~~~~~~en~d  255 (512)
T COG4070         203 TYFEVELSRN-SPKSAEHFLALMED--GT-----LRIDVTTNTFI-------------------SDDTLQEEKVPEENFD  255 (512)
T ss_pred             EEEEEEeCCC-CchhHHHHHHHhhc--ce-----EEEEEecccee-------------------eccccccccCChhhhh
Confidence            4677888775 69999999999821  10     01122222221                   2223334456666766


Q ss_pred             cCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824        100 LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIEN  154 (272)
Q Consensus       100 ~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~  154 (272)
                      +.  .+|.+++.|.|.+  ...-||.-.+.+.- -.|.|+|+|++||++|+-...
T Consensus       256 ~R--erG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         256 LR--ERGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hh--hcceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence            54  4899999988744  45788887664432 358999999999999876554

>PRK00969 hypothetical protein; Provisional

Probab=96.00  E-value=0.058  Score=52.85  Aligned_cols=129  Identities=21%  Similarity=0.277  Sum_probs=77.0

Q ss_pred             CCCCeEEEEEEECC------ee-ceeEEEEEcCCCChhHHHHHHHHhccc--CCCCccCCccceeeCcEEEEeecCceee
Q psy17824          3 LIRPRCYFDVEISD------IP-LGRIVFELYSDICPITCENFRALCTGE--KGIGKTTGKNLHYLNIVFHRVVKGFMIQ   73 (272)
Q Consensus         3 ~~~p~v~~di~v~~------t~-~G~IvIeL~~d~aP~t~~nF~~L~~g~--~g~g~~~~k~~~Y~g~~f~Rvi~~f~iq   73 (272)
                      .+.|...|||.-.+      .+ ---|.|+||.+.||.||.-|..+. |-  +-+|          -..+|-..++.++-
T Consensus       354 ~Q~P~~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG----------~L~v~F~~~d~~lF  422 (508)
T PRK00969        354 EQTPETTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT-GLKTKPVG----------KLPVYFKYEDTYLF  422 (508)
T ss_pred             ecCCchHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc-CCcccccc----------eeEEEEEeCCeEEE
Confidence            45666666664322      11 246889999999999999998876 21  1111          23566666775555


Q ss_pred             ecCccCCCCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEc------CCC-CCCCCCCcEEEEEecCH
Q psy17824         74 SGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT------QPA-PHLDGVHVVFGHVVSGQ  146 (272)
Q Consensus        74 gGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl------~~~-p~ld~~~~VFG~Vi~G~  146 (272)
                      -|+..          ++..+.+||..-.-..+|.|+|-|......|- .-|-|      +|. ..+++ .-++|+|+ ++
T Consensus       423 k~~~~----------~~k~liPEN~P~~~V~ag~IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~  489 (508)
T PRK00969        423 KGNIE----------YAKGLLPENTPEDKVKAGEIGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NL  489 (508)
T ss_pred             ccChh----------hccccCCCCCCCCccccceEeeechhhhcCce-EEEEccCCcccCCCCCCccC-ceeEEEec-Ch
Confidence            44432          23345666666666778888887754221110 11222      232 23444 45899999 99


Q ss_pred             HHHHHHhcC
Q psy17824        147 NVVSHIENL  155 (272)
Q Consensus       147 dVl~~I~~~  155 (272)
                      +-|..|...
T Consensus       490 e~Lk~lKeG  498 (508)
T PRK00969        490 EKLKKLKEG  498 (508)
T ss_pred             HHhcccccC
Confidence            998887754

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=95.04  E-value=0.11  Score=43.17  Aligned_cols=107  Identities=19%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCc--eeeecCccCCCCCCCCccCCCCCCCCC
Q psy17824         20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGF--MIQSGDFSVGNGTGGESIYGGTFEDEN   97 (272)
Q Consensus        20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f--~iqgGd~~~~~g~gg~s~~g~~~~de~   97 (272)
                      -.++.+|+.|.||.||+.|.++-              =|.+..+|-..-+.  +|.-+++..           ....-||
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN   62 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN   62 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred             eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence            36889999999999999999987              27777777776653  445555420           1112233


Q ss_pred             cCcCCCcceeEeee--c-cC----CC-CCccEEEEEcCC------CCCCCCCCcEEEEEecCHHHHHHHhc
Q psy17824         98 FELKHDEPFLLSMA--N-RG----KD-TNGSQFFITTQP------APHLDGVHVVFGHVVSGQNVVSHIEN  154 (272)
Q Consensus        98 ~~~~h~~~G~lsm~--~-~g----~~-s~~SqFfItl~~------~p~ld~~~~VFG~Vi~G~dVl~~I~~  154 (272)
                      ... |-.+|-|.+.  . ..    +. .+...+|+-.++      .-+|-+  .+|++|++|++-|.++.+
T Consensus        63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~  130 (147)
T PF12903_consen   63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR  130 (147)
T ss_dssp             EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred             Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence            322 2235555544  1 00    11 122334443332      223333  589999999997776654

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.15  Score=48.70  Aligned_cols=112  Identities=21%  Similarity=0.289  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCChhHHHHHHHHhcc--cCCCCccCCccceeeCcEEEEeecCc-eee-ecCccCCCCCCCCccCCCCCCCC
Q psy17824         21 RIVFELYSDICPITCENFRALCTG--EKGIGKTTGKNLHYLNIVFHRVVKGF-MIQ-SGDFSVGNGTGGESIYGGTFEDE   96 (272)
Q Consensus        21 ~IvIeL~~d~aP~t~~nF~~L~~g--~~g~g~~~~k~~~Y~g~~f~Rvi~~f-~iq-gGd~~~~~g~gg~s~~g~~~~de   96 (272)
                      -|.||||.+.||.++.-|..+. |  .+-+|          -..+|-..+|. ++. -|+...          +.-+.+|
T Consensus       377 iieIELyed~APrSv~yFRr~t-~l~~kpVG----------kL~Vhfay~d~~~vmfegn~~~----------~K~llPE  435 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRST-GLKTKPVG----------KLKVHFAYDDTYLVMFEGNAVL----------AKGLLPE  435 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhc-cccccccc----------ceEEEEEeCCceEEEEcCChHH----------hccCCCC
Confidence            5899999999999999998876 2  11122          22455555552 222 233221          2223344


Q ss_pred             CcCcCCCcceeEeeeccCCCCCccEEEEEcC------CCC-CCCCCCcEEEEEecCHHHHHHHhcC
Q psy17824         97 NFELKHDEPFLLSMANRGKDTNGSQFFITTQ------PAP-HLDGVHVVFGHVVSGQNVVSHIENL  155 (272)
Q Consensus        97 ~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~------~~p-~ld~~~~VFG~Vi~G~dVl~~I~~~  155 (272)
                      |..-....+|.|++.|......|. .-+-|.      |.. .+. ..-++|+|++|.+-|..|...
T Consensus       436 N~P~d~Ve~g~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe-~TNiIGrIveg~e~l~~ikeG  499 (512)
T COG4070         436 NTPADTVEAGEIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFE-GTNIIGRIVEGPERLIGIKEG  499 (512)
T ss_pred             CCchhheecccccccccchhccce-eEEEeccccccCCCCCccc-cceeehhhccChHHhcccccC
Confidence            443333334444433322111110 111122      211 222 346899999999999888763

>KOG2572|consensus

Probab=88.21  E-value=0.54  Score=45.07  Aligned_cols=6  Identities=0%  Similarity=0.191  Sum_probs=2.6

Q ss_pred             EEeecC
Q psy17824         64 HRVVKG   69 (272)
Q Consensus        64 ~Rvi~~   69 (272)
                      .-|.||
T Consensus       278 ~~iAPn  283 (498)
T KOG2572|consen  278 RTIAPN  283 (498)
T ss_pred             Hhhcch
Confidence            334444

>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function

Probab=84.66  E-value=6.9  Score=31.23  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=28.4

Q ss_pred             cceeEeeeccCCCCCccEEEEEcCCCC-------CCCCCCcEEEEEecCHHHHHHHhc
Q psy17824        104 EPFLLSMANRGKDTNGSQFFITTQPAP-------HLDGVHVVFGHVVSGQNVVSHIEN  154 (272)
Q Consensus       104 ~~G~lsm~~~g~~s~~SqFfItl~~~p-------~ld~~~~VFG~Vi~G~dVl~~I~~  154 (272)
                      ..|-|+.-..+.+     |.|-+++.|       .+....+++|+|++|.+.|..|..
T Consensus        61 ~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~  113 (120)
T PF04126_consen   61 EAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG  113 (120)
T ss_dssp             -TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred             cCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence            4677776554433     777777764       445668999999999998887754

; PDB: 2KA0_A 1ZX8_C 2NNZ_A.

>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type

Probab=82.89  E-value=9.1  Score=31.03  Aligned_cols=48  Identities=17%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             eEEEEEEECCeeceeEEEEEcCCCCh---------hHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecC
Q psy17824          7 RCYFDVEISDIPLGRIVFELYSDICP---------ITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKG   69 (272)
Q Consensus         7 ~v~~di~v~~t~~G~IvIeL~~d~aP---------~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~   69 (272)
                      .||+.     +..||+.+..-.+.|+         .++..|++...          +-..-+-++|+-++++
T Consensus         5 NIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd   61 (130)
T PF06138_consen    5 NIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRD   61 (130)
T ss_pred             EEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence            35555     8889888777755433         26789999883          4445678999999998

>KOG2270|consensus

Probab=80.64  E-value=1.7  Score=42.13  Aligned_cols=10  Identities=20%  Similarity=0.248  Sum_probs=5.5

Q ss_pred             hHHHHHHHHh
Q psy17824         33 ITCENFRALC   42 (272)
Q Consensus        33 ~t~~nF~~L~   42 (272)
                      +-..|+..|.
T Consensus       215 KE~RNLkRl~  224 (520)
T KOG2270|consen  215 KEMRNLKRLN  224 (520)
T ss_pred             HHHHHHHHHH
Confidence            3445666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		4e-58
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-58
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		5e-58
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		6e-54
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		6e-49
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		8e-43
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		8e-40
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		8e-39
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-38
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-37
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-36
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-36
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		9e-36
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		1e-35
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		2e-34
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-34
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-34
1dyw_A	173	Biochemical And Structural Characterization Of A Di		3e-34
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		1e-33
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		1e-33
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		2e-33
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-33
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-33
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		3e-33
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		3e-33
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-33
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		4e-33
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		5e-33
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		5e-33
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		5e-33
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		5e-33
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		6e-33
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		6e-33
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		7e-33
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		7e-33
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		8e-33
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-32
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-32
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		2e-32
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		3e-32
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		5e-32
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-32
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-32
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		8e-32
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-31
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-31
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-31
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-31
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		3e-31
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		4e-31
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		2e-29
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-29
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		5e-29
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-28
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		4e-28
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		5e-28
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		6e-26
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		7e-26
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-23
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-23
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		6e-23
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		6e-23
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		7e-23
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		7e-17
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-14
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		1e-13
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		2e-10
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		3e-10
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		9e-05
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		3e-04
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		4e-04

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 124/176 (70%)
Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct: 22  IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 81
Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH+  FLLSMANRGKDTNGS
Sbjct: 82  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGS 141
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL+
Sbjct: 142 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGELI 197

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 124/175 (70%)
Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct: 5   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64
Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65  XLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  221 bits (562), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 124/175 (70%)
Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LC             LHY +
Sbjct: 5   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64
Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124
Query: 121 QFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           QFFITT+P PHLD          SGQ VV  IEN   D  S+P  +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 115/171 (67%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P+C+FD+EI+  P+GRI+F+L+SDICP TC+NF  LC             L Y    FHR
Sbjct: 20  PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 79
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           VVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD  FLLSMANRGK TNGSQFFIT
Sbjct: 80  VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           T+PAPHLD          SG  V+  IENL  D  SRP  DVRV+ C  L 
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  190 bits (483), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 111/172 (64%)
Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
           R R + DV I     GRIV ELY+DI P TC NF  LC             LHY    FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           TT PAPHL+          SGQ VV+ IE L  +  +RPL DV ++ C ELV
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           PR +FDV+I    +GRIV EL++DI P T ENFRALC             LH+    FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++K FMIQ GDFS  NGTGGESIYG  FEDENF  KHD+  LLSMAN G +TNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFIT 135
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T P PHLD           G  V   +EN+ V K  +P +   + +C EL
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
           R + +FD+ I +   GRI+FEL+SDI P TCENFRALC            NLHY N +FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGK--NLHYKNSIFH 60
Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T  P P LD           G NVV  +E     K     + V +  C EL
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFH 64
           R + +FD+ I +   GRI+FEL+SDI P TCENFRALC            NLHY N +FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGK--NLHYKNSIFH 60
Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQF I
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T  P P LD           G NVV  +E     K     + V +  C E 
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEW 170

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           + YFDVE    P+GR+VF+LY+DI P T ENFRALC               Y    FHRV
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEK--------GFGYAGSPFHRV 54
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +  FM+Q GDF+ GNGTGG+SIYGG F DENF+  HD P LLSMAN G +TNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
            P P LD           G ++V  +E+L     +   + V V K  EL
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIV-VAKSGEL 162

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  YFD+ I   P GRI  EL++D  PIT ENFRALC             L Y    FHR
Sbjct: 20  PVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKP-LCYTGSFFHR 78
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++  FMIQ GDF+ G+GTGGESIYG  F DENF   HD PFLLSMAN G +TNGSQFFIT
Sbjct: 79  IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIEN 154
           T P P LD           G  VV  IE 
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEK 167

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           + YFD+ I D  +GR++F L+    P T +NF AL                Y N  FHRV
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRV 68
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +K FMIQ GDF+ G+GTGG+SIYG  F DENF+LKH  P  +SMAN GKDTNGSQFFITT
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                LD           G  VV  +E+   D   +PL+DV +  C ++
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           + YFD+ I D  +GR++F L+    P T +NF AL                Y N  FHRV
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRV 58
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +K FMIQ GDF+ G+GTGG+SIYG  F DENF+LKH  P  +SMAN GKDTNGSQFFITT
Sbjct: 59  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                LD           G  VV  +E+   D   +PL+DV +  C ++
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  147 bits (370), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           + YFD+ I D  +GR+V  L+    P T +NF AL                Y +  FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEK--------GFGYKDSKFHRV 65
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +K FMIQ GDF+ G+GTGG+SIYG  F DENF+LKH  P  +SMAN GKDTNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                LD           G  VV  +E    D   +PL+DV +  C ++
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           + YFD+ I D  +GR+V  L+    P T +NF AL                Y +  FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEK--------GFGYKDSKFHRV 65
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +K FMIQ GDF+ G+GTGG+SIYG  F DENF+LKH  P  +SMAN GKDTNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                LD           G  VV  +E    D   +PL+DV +  C ++
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           PR +FD+ I +   GRIV EL SDI P T ENFRALC               Y N  FHR
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER--------GFGYHNCCFHR 62
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q GDF  G+GTGG+SIYG  F+DENF+L+H+   +LSMAN G +TNGSQFFI 
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           T     LD           GQNVV  +E++   K  +  + V + +C EL+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESVG-SKSGKVKEPVIISRCGELI 172

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 92/164 (56%), Gaps = 9/164 (5%)
Query: 9   YFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVK 68
           +FD+  +  PLG I F+L+ D+ P T  NFRALC               Y    FHRV+ 
Sbjct: 5   FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK--------GFGYAGSHFHRVIP 56
Query: 69  GFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQP 128
            FM+Q GDF+ GNGTGG+SIYG  F DENF+LKH++P LLSMAN G +TNGSQFFITT  
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 129 APHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
              LD           G NVV  IE        +P   + + KC
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKC 159

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           +  P+ +FD+ I +   GRIV ELY+D  P T ENFRALC             LHY + V
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKP-LHYKSSV 63
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELK---HDEPFLLSMANRGKDTNG 119
           FHRV+  FMIQ GDF+ GNGTGGESIYG TF DE+F  K   H     LSMAN G +TNG
Sbjct: 64  FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 120 SQFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           SQFFI T   P LD           G +VV  +E L      +    + V  C E+ 
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLG-SSSGKTRSRIVVSDCGEVA 179

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           + R + +FD+ I     GRIV ELY D+ P T  NFRALC             LH+    
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKP-LHFKGSK 59
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++  FMIQ GDF+ GNGTGGESIYG  F DENF+ KH  P +LSMAN G +TNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           F+ T     LD           G +VV  +E+    +  +P++D  +  C +L
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 97/174 (55%), Gaps = 13/174 (7%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           +  + YFDV I   PLGRI   L+    P+T ENFR LC               Y + +F
Sbjct: 10  VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIF 61
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTNGSQ 121
           HRV++ FMIQ GDF+  +GTGG+SIYG  F DEN  +KH   F+  LSMAN G +TNGSQ
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH---FVGALSMANAGPNTNGSQ 118
Query: 122 FFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FFITT P P LD           G +VV  IE    +   RP++ V++V   EL
Sbjct: 119 FFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 97/174 (55%), Gaps = 13/174 (7%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           +  + YFDV I   PLGRI   L+    P+T ENFR LC               Y + +F
Sbjct: 10  VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIF 61
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTNGSQ 121
           HRV++ FMIQ GDF+  +GTGG+SIYG  F DEN  +KH   F+  LSMAN G +TNGSQ
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH---FVGALSMANAGPNTNGSQ 118
Query: 122 FFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FFITT P P LD           G +VV  IE    +   RP++ V++V   EL
Sbjct: 119 FFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 71
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 183

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 60
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 61  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 172

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQFF
Sbjct: 53  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 ICTAKTKWLDGKHVVFGAVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 163

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +L+MAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 53
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQFF
Sbjct: 53  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 163

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  Y DV+ +  PLGR+V EL +D+ P T ENFRALC               Y    FHR
Sbjct: 5   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 56
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQFFI 
Sbjct: 57  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T     LD           G +VV  IE+    K  R  + + +  C +L
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 165

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FH+++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  Y DV+ +  PLGR+V EL +D+ P T ENFRALC               Y    FHR
Sbjct: 4   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 55
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQFFI 
Sbjct: 56  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T     LD           G +VV  IE+    K  R  + + +  C +L
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  Y DV+ +  PLGR+V EL +D+ P T ENFRALC               Y    FHR
Sbjct: 4   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 55
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQFFI 
Sbjct: 56  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T     LD           G +VV  IE+    K  R  + + +  C +L
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 164

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  Y DV+ +  PLGR+V EL +D+ P T ENFRALC               Y    FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHR 54
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T     LD           G +VV  IE+    K  R  + + +  C +L
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 163

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 6   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEK--------GFGYKGSCF 57
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQFF
Sbjct: 58  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 117
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 118 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 168

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q G+F+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSC 52
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++ GFM Q G+F+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LD           G N+V  +E     +  +  + + +  C +L
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQL 164

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQFF
Sbjct: 53  HRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V  ++     +  +  + + +  C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFG-SRNGKTSKKITIADCGQL 163

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 7   RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRV 66
           R YFD+EI   P+GRIV  L+    P T  NF  L                Y    FHRV
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 67  VKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +  FMIQ GDF+ G+GTGG SIYG  F DENF+LKH     LSMAN G DTNGSQFFITT
Sbjct: 60  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 127 QPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
              P LD           G +VV  IE        RP QDV +     + 
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           +  + +FDV I D  +GRIV  L+ ++ P T ENF AL                Y   +F
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK--------GYGYKGSIF 57
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF+  +GTGG SIYG TF DENF+LKH     +SMAN G DTNGSQFF
Sbjct: 58  HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           IT      LD           G  VV  IE    D   RPL D  +V   ++
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 8   CYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVV 67
            +F++ I+D P GRIVF+LY +  P T +NFR L                Y + +FHRV+
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH--------GFGYKDSIFHRVI 56
Query: 68  KGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
             FM+Q GDF+  NGTGG+SIYG  F DENF++KH +P LLSMAN G +TNGSQFFITT 
Sbjct: 57  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIE 153
           P   LD           G ++V  +E
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVE 142

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 8   CYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVV 67
            +F++ I+D P GRIVF+LY +  P T +NFR L                Y + +FHRV+
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH--------GFGYKDSIFHRVI 57
Query: 68  KGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
             FM+Q GDF+  NGTGG+SIYG  F DENF++KH +P LLSMAN G +TNGSQFFITT 
Sbjct: 58  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIE 153
           P   LD           G ++V  +E
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVE 143

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FDV I    +GR+  EL++D+ P T ENFR  C             + Y    F
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVP---IGYKGSTF 65
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF  G+GTG  SIY G F DENF+L+H  P LLSMAN G  TNG QFF
Sbjct: 66  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 125
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           IT      LD           G  V+  IEN+P    ++P   V + +C E+
Sbjct: 126 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P+ Y D++I + P GRI   L SD+ P+T ENFR LC               +    FHR
Sbjct: 12  PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHR 63
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++  FM Q GDF+  NGTGG+SIYG  F+DENF LKH  P LLSMAN G +TNGSQFF+T
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
                 LD           G +V+  IE     K  +P Q V +  C E V
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 173

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 98/173 (56%), Gaps = 9/173 (5%)
Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIV 62
           +  P  +FDV     PLGRI  EL+S+I P T ENFRALC               + N +
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEK--------GFGFKNSI 55
Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHRV+  F+ Q GD +  +GTGG+SIYG  FEDENF++KH  P LLSMAN+G++TN SQF
Sbjct: 56  FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 123 FITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
            IT + A HLD           G + V  IE+    K S   + + + +C ++
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGS-VCRRITITECGQI 167

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P+ Y D++I + P GRI   L SD+ P+T ENFR LC               +    FHR
Sbjct: 4   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHR 55
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++  FM Q GDF+  NGTGG+SIYG  F+DENF LKH  P LLSMAN G +TNGSQFF+T
Sbjct: 56  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 115
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
                 LD           G +V+  IE     K  +P Q V +  C E V
Sbjct: 116 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 165

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 13/177 (7%)
Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLN 60
           M ++  + YFD+ I D P+GR+V  L+ +  P T ENF+ L                Y  
Sbjct: 1   MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN--------GFGYKG 52
Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFL--LSMANRGKDTN 118
            +FHRV++ FMIQ GDF+  +GTGG+SIYG  F+DEN ++KH   F+  +SMAN G ++N
Sbjct: 53  SIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH---FVGAVSMANAGPNSN 109
Query: 119 GSQFFITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           GSQFF+TT P P LD           G +VV  +EN       +P + V++  C  L
Sbjct: 110 GSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           + P  +FD+ +   PLGR+ FEL++D  P T ENFRAL                Y    F
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRAL--------STGEKGFGYKGSCF 52
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++ GF  Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LS AN G +TNGSQFF
Sbjct: 53  HRIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFF 112
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           I T     LD           G N+V   E     +  +  + + +  C +L
Sbjct: 113 ICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFG-SRNGKTSKKITIADCGQL 163

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVF 63
           +  + +FDV I D  +GRIV  L+  + P T ENF AL                Y    F
Sbjct: 14  VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEK--------GYGYKGSKF 65
Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GD + G+GTGG SIYG TF DENF+LKH     +SMAN G DTNGSQFF
Sbjct: 66  HRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 125
Query: 124 ITTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           IT      LD           G  VV  IE    D   RPL +  ++   ++
Sbjct: 126 ITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P+ Y D++I + P GRI   L SD+ P T ENFR LC               +    FHR
Sbjct: 13  PQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEK--------GFGFKGSSFHR 64
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++  F  Q GDF+  NGTGG+SIYG  F+DENF LKH  P LLS AN G +TNGSQFF+T
Sbjct: 65  IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 126 TQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
                 LD           G +V+  IE     K  +P Q V +  C E V
Sbjct: 125 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGEYV 174

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P  + D+ + +  LG+  FEL+ +I P T ENFR  C             + Y N +FHR
Sbjct: 60  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLP---VGYKNTIFHR 116
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+K FMIQ GDF   NG+G  SIYG  F+DENF++KHD+  LLSMAN G +TNG QFFIT
Sbjct: 117 VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 176
Query: 126 TQPAPHLDXXXXXXXXXXSGQN--VVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
           T+    LD             +  ++  IEN+ V   + +P   + VV+C EL
Sbjct: 177 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 9   YFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVK 68
           YFDV  ++  LGRIV +L  DI P T +NFR LC               Y    FHR++ 
Sbjct: 31  YFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTFHRIIP 82
Query: 69  GFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQP 128
           GFM+Q GD++  NGTGG SIYG  F DENFELKH +  +LSMAN G  TNGSQFFIT   
Sbjct: 83  GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 129 APHLDXXXXXXXXXXSGQNVVSHI 152
              LD           G +VV  I
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKI 166

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 7   RCYFDVE-----ISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNI 61
           + +FDVE      ++  +GRIVF L+    P T +NFR LC               Y   
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRES 55
Query: 62  VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
            FHR++  FMIQ GDF+ GNGTGG SIYG  F DENF  KHD+  +LSMAN G +TNGSQ
Sbjct: 56  TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 115
Query: 122 FFITTQPAPHLDXXXX--XXXXXXSGQNVVSHIENLPVDKMS-RPLQDVRVVKCNEL 175
           FFITT     LD               +VV  IE L     S R     ++V C EL
Sbjct: 116 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I   L+   C  T +NF                N +Y N +FHRV+K FM+Q+GD S
Sbjct: 14  MGDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPS 62
Query: 79  VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G+GTGGESI+G  FEDE F+ L H +PF++SMAN G +TNGSQFFITT P P LD    
Sbjct: 63  -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVV 170
                  G  +V  IE +  DK  +PL+D++++
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKIL 154

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHR 65
           P+   D  I    +G I  +L+   CP T ENF   C            N +Y    FHR
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSR--------NGYYNGHTFHR 65
Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFI 124
           ++KGFMIQ+GD   G G GGESI+GG FEDE +  L+HD P+ LSMAN G +TNGSQFFI
Sbjct: 66  IIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 125 TTQPAPHLDXXXXXXXXXXSGQNVVSHIENLPVD-KMSRPLQDVRVV 170
           T  P P LD           G  VV  I N+ V+ K  +P +DV ++
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSII 171

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I  E++ +  P TCENF ALC              +Y   +FHR +KGFM+Q+GD  
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGD-P 56
Query: 79  VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG SI+G  FEDE  E LKH+   ++SMAN G +TNGSQFFIT    PHLD    
Sbjct: 57  TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 138 XXXXXXSGQNVVSHIENLPV-DKMSRPLQDVRV 169
                  G   +  +E LPV +K  RPL DV +
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I  E++ +  P TCENF ALC              +Y   +FHR +KGFM+Q+GD  
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGD-P 62
Query: 79  VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG SI+G  FEDE  E LKH+   ++SMAN G +TNGSQFFIT    PHLD    
Sbjct: 63  TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 122
Query: 138 XXXXXXSGQNVVSHIENLPV-DKMSRPLQDVRV 169
                  G   +  +E LPV +K  RPL DV +
Sbjct: 123 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 155

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG    ELY    P TC NF  LC               Y N +FHRV+  F+IQ GD  
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLCEMGF-----------YDNTIFHRVIPNFVIQGGD-P 94
Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG+SIYG  FEDE N ELKH    +LSM+N G +TN SQFFIT  P PHLD    
Sbjct: 95  TGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
                      + +I ++     ++P+ D+++++ +  V
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 17/155 (10%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G + FEL+   CP  C+NF AL               +Y N +FH+ +KGF+IQ GD   
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGD-PT 73
Query: 80  GNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGK----DTNGSQFFITTQPAPHLDX 134
           G G GGESIYG  F+DE + ELK+D   +LSMA++G     +TNGSQFFIT    P L+ 
Sbjct: 74  GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 135 XXXXXXXXXSGQNVVSHIENLPVDKMSRPLQDVRV 169
                     G   ++ +EN P DK  +P+ ++ +
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G IV ELY    P TC+NF  L               +Y    FHR++K FMIQ GD  
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LD    
Sbjct: 68  TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
                  G  +V+ +  +  +   RP+ DV+++K 
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G IV ELY    P TC+NF  L               +Y    FHR++K FMIQ GD  
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LD    
Sbjct: 68  TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
                  G  +V+ +  +  +   RP+ DV+++K 
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G IV ELY    P TC+NF  L               +Y    FHR++K FMIQ GD  
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGD-P 67
Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXX 137
            G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LD    
Sbjct: 68  TGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 138 XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
                  G  +V+ +  +  +   RP+ DV+++K 
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G I  EL+S   P  C NF  LC              +Y N +FHRVV GF++Q GD   
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLCL-----------EAYYDNTIFHRVVPGFIVQGGD-PT 81
Query: 80  GNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXXX 138
           G G+GGESIYG  F+DE +  L+ +   L++MAN G   NGSQFF T   A  L+     
Sbjct: 82  GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN-NKHT 140
Query: 139 XXXXXSGQNVVS--HIENLPVDKMSRPLQDVRVVKCNEL 175
                +G  V +   +  + +D   RP    ++  C  L
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G +  EL+ D+ P TCENF  LC              +Y   +FHR ++ F+IQ GD + 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPTG 77
Query: 80  GNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXXXXX 138
               G ES +G  F+DE    L H    +LSMAN G ++N SQFFIT +   +LD     
Sbjct: 78  TGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 139 XXXXXSGQNVVSHIENLPVD-KMSRPLQDVRV 169
                 G +V++ +EN+  D K  RP +++R+
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXN----LHYLNIVFHRVVKGFMIQSG 75
           G I   L+ +  P T  NF  L                    Y   VFHRV++GFMIQ G
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 76  DFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDXX 135
           D +     G    +   F  E   L+ D+P+LL+MAN G  TNGSQFFIT    PHL+  
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 136 XX--XXXXXXSGQNVVSHIENLPVDKMSRPLQDVRV 169
                       Q VV  I     D   RP   V +
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G +  EL++D+ P  C++F  LC              ++ + +FHR ++ FMIQ G   +
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64
Query: 80  GNGTGGESIY-----------GGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQ 127
              +  + +            G  FEDE +  L H    +LSMAN GK +N S+FFIT +
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 128 PAPHLDXXXXXXXXXXSGQNVVSHIENL 155
              HL+           G +V+   E L
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 35/135 (25%)
Query: 19  LGRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG +  EL++  CP+ C NF  LC              +Y+N +FHRVVK F++Q GD  
Sbjct: 30  LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGD-P 77
Query: 79  VGNGTGGESIYGGTFEDENFE------LKHDEPFLLSMANRGKD--------------TN 118
            G G GG      TF+ + F+      LK     L+ +AN G+               TN
Sbjct: 78  TGTGRGGADT---TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTN 134
Query: 119 GSQFFITTQPAPHLD 133
           G+QFFIT   A  L+
Sbjct: 135 GNQFFITLARADVLN 149

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
          G I  +L++D  P T  NF                + HY   +FHRV+ GFMIQ G F  
Sbjct: 9  GTITLKLFADKAPETAANFEQYVK-----------DGHYDGTIFHRVIDGFMIQGGGFEP 57
Query: 80 G 80
          G
Sbjct: 58 G 58

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 20 GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
          G IV + + D  P T +NF   C               Y N +FHRV+ GFMIQ G F  
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYCREGF-----------YNNTIFHRVINGFMIQGGGFEP 57
Query: 80 G 80
          G
Sbjct: 58 G 58

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 20  GRIVFELYSDICPITCENFRALCXXXXXXXXXXXXNLHYLNIVFHRVVKGFMIQSGDFSV 79
           G IV + + D  P T +NF   C               Y N +FHRV+ GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQ------ 51
Query: 80  GNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPH 131
                     GG FE    +    EP      N  K+T G+     TQ APH
Sbjct: 52  ----------GGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQ-APH 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-117
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-117
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-116
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-107
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-103
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-102
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-102
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-102
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-101
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-99
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	2e-97
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-96
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	8e-94
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	4e-93
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	9e-93
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-92
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	3e-92
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-90
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	4e-90
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-78
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-78
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-77
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	1e-77
2b71_A	196	Cyclophilin-like protein; structural genomics, str	5e-74
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-72
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	3e-71
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-70
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-69
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	6e-68
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	3e-65
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	5e-60
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-41
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	6e-40
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	2e-39
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-29
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	5e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  331 bits (852), Expect = e-117
 Identities = 108/173 (62%), Positives = 127/173 (73%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
            R R + DV I     GRIV ELY+DI P TC NF  LCTG  G GK +GK LHY    F
Sbjct: 5   DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTF 64

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFF
Sbjct: 65  HRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFF 124

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           ITT PAPHL+ +HVVFG VVSGQ VV+ IE L  +  +RPL DV ++ C ELV
Sbjct: 125 ITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  332 bits (853), Expect = e-117
 Identities = 121/177 (68%), Positives = 137/177 (77%)

Query: 2   KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
               P+C+FD+EI+  P+GRI+F+L+SDICP TC+NF  LC+GEKG+GKTTGK L Y   
Sbjct: 16  PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75

Query: 62  VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
            FHRVVK FMIQ GDFS GNG GGESIYGG F+DENF LKHD  FLLSMANRGK TNGSQ
Sbjct: 76  TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQ 135

Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLK 178
           FFITT+PAPHLDGVHVVFG V+SG  V+  IENL  D  SRP  DVRV+ C  L  K
Sbjct: 136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  331 bits (851), Expect = e-116
 Identities = 119/175 (68%), Positives = 142/175 (81%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           +K+ RPRC+FD+ I++ P GR+VFEL+SD+CP TCENFR LCTGEKG GK+T K LHY +
Sbjct: 5   IKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKS 64

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRVVK FM+Q GDFS GNG GGESIYGG FEDE+F +KH++ FLLSMANRGKDTNGS
Sbjct: 65  CLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGS 124

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           QFFITT+P PHLDG HVVFG V+SGQ VV  IEN   D  S+P  +VR++ C EL
Sbjct: 125 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  306 bits (787), Expect = e-107
 Identities = 83/172 (48%), Positives = 104/172 (60%), Gaps = 3/172 (1%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           + P  +FDV I    +GR+  EL++D+ P T ENFR  CTGE       G  + Y    F
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTF 65

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF  G+GTG  SIY G F DENF+L+H  P LLSMAN G  TNG QFF
Sbjct: 66  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 125

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           IT      LDG HVVFG ++ G  V+  IEN+P    ++P   V + +C E+
Sbjct: 126 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  296 bits (761), Expect = e-103
 Identities = 92/173 (53%), Positives = 114/173 (65%), Gaps = 2/173 (1%)

Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
           + R + +FD+ I     GRIV ELY D+ P T  NFRALCTGE GIGK+ GK LH+    
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++  FMIQ GDF+ GNGTGGESIYG  F DENF+ KH  P +LSMAN G +TNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           F+ T     LDG HVVFG VV G +VV  +E+       +P++D  +  C +L
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GKPVKDCMIADCGQL 171

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  295 bits (757), Expect = e-102
 Identities = 96/168 (57%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
            P  YFD+ I   P GRI  EL++D  PIT ENFRALCTGEKG+G++ GK L Y    FH
Sbjct: 19  NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQS-GKPLCYTGSFFH 77

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FMIQ GDF+ G+GTGGESIYG  F DENF   HD PFLLSMAN G +TNGSQFFI
Sbjct: 78  RIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFI 137

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           TT P P LDG HVVFG V+ G  VV  IE        +P + V +   
Sbjct: 138 TTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN-GKPTKSVCITAS 184

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  294 bits (756), Expect = e-102
 Identities = 96/171 (56%), Positives = 116/171 (67%), Gaps = 3/171 (1%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           R + +FD+ I +   GRI+FEL+SDI P TCENFRALCTGEK    + GKNLHY N +FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T  P P LDG HVVFG V+ G NVV  +E           + V +  C EL
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCGEL 170

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  301 bits (772), Expect = e-102
 Identities = 116/260 (44%), Positives = 148/260 (56%), Gaps = 9/260 (3%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
            PR +FDV+I    +GRIV EL++DI P T ENFRALCTGEKGIG TTGK LH+    FH
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++K FMIQ GDFS  NGTGGESIYG  FEDENF  KHD+  LLSMAN G +TNGSQFFI
Sbjct: 75  RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFI 134

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAK 184
           TT P PHLDG HVVFG V+ G  V   +EN+ V    +P +   + +C EL  +      
Sbjct: 135 TTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGEL-KEGDDWGI 192

Query: 185 EKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAK-------KRKKHKKDKKKKKKKSKY 237
             +  S  S      D + + K+  +     ++ K       K +  +   KK  K  +Y
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252

Query: 238 EEEEEKEEGEQTDSEKEAKK 257
            E       +   ++ +   
Sbjct: 253 VEGSRAAAEDADGAKLQPVA 272

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  293 bits (751), Expect = e-101
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGK---------N 55
            PR Y D+ +++  +GR+  +L+ D  P   ENF  L  G+     + G          N
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 56  LHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED---ENFELKHDEPFLLSMA- 111
             Y    FH V+    I SGD    NG+   ++Y          ++   H+   LLS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 112 ---NRGKDTNGSQFFIT------TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR 162
                G     S F IT      +     LD   VV G V  G +V+  I ++      R
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 163 PLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSDESDK 201
                 + KC   +  S+ + K     + T    ++  +
Sbjct: 194 KYPTFSIGKCGAYLDSSQAQRKRPVNVNGTKRFLNKPTR 232

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  290 bits (743), Expect = 1e-99
 Identities = 80/174 (45%), Positives = 108/174 (62%), Gaps = 6/174 (3%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
            P  + D+ + +  LG+  FEL+ +I P T ENFR  CTGE  +       + Y N +FH
Sbjct: 59  NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFH 115

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF   NG+G  SIYG  F+DENF++KHD+  LLSMAN G +TNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175

Query: 125 TTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVD-KMSRPLQDVRVVKCNEL 175
           TT+    LDG +VVFG ++      ++  IEN+ V   + +P   + VV+C EL
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  282 bits (723), Expect = 2e-97
 Identities = 88/172 (51%), Positives = 108/172 (62%), Gaps = 9/172 (5%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +  + YFDV I   PLGRI   L+    P+T ENFR LCTGE G G        Y + +F
Sbjct: 10  VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIF 61

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV++ FMIQ GDF+  +GTGG+SIYG  F DEN  +KH     LSMAN G +TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           ITT P P LDG HVVFG V+ G +VV  IE    +   RP++ V++V   EL
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  280 bits (719), Expect = 1e-96
 Identities = 89/172 (51%), Positives = 111/172 (64%), Gaps = 8/172 (4%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +  + YFD+ I D  +GR++F L+    P T +NF AL TGEKG G        Y N  F
Sbjct: 14  VTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKF 65

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF+ G+GTGG+SIYG  F DENF+LKH  P  +SMAN GKDTNGSQFF
Sbjct: 66  HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 125

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           ITT     LDG HVVFG V+ G  VV  +E+   D   +PL+DV +  C ++
Sbjct: 126 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  272 bits (699), Expect = 8e-94
 Identities = 91/173 (52%), Positives = 112/173 (64%), Gaps = 9/173 (5%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
             PR +FD+ I +   GRIV EL SDI P T ENFRALCTGE+G G        Y N  F
Sbjct: 9   NLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCF 60

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+  FM Q GDF  G+GTGG+SIYG  F+DENF+L+H+   +LSMAN G +TNGSQFF
Sbjct: 61  HRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFF 120

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           I T     LDG HVVFG VV GQNVV  +E++      +  + V + +C EL+
Sbjct: 121 ICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-GKVKEPVIISRCGELI 172

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  271 bits (695), Expect = 4e-93
 Identities = 85/173 (49%), Positives = 103/173 (59%), Gaps = 9/173 (5%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
             P+ Y D++I + P GRI   L SD+ P+T ENFR LCT EKG G        +    F
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HR++  FM Q GDF+  NGTGG+SIYG  F+DENF LKH  P LLSMAN G +TNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           +T      LDG HVVFG V  G +V+  IE        +P Q V +  C E V
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GKPKQKVIIADCGEYV 173

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  270 bits (692), Expect = 9e-93
 Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)

Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
           +  P  Y DV+ +  PLGR+V EL +D+ P T ENFRALCTGEKG G        Y    
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52

Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHRV+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112

Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FI T     LDG HVVFGHV+ G +VV  IE+       R  + + +  C +L
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCGQL 164

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  269 bits (691), Expect = 1e-92
 Identities = 80/171 (46%), Positives = 107/171 (62%), Gaps = 9/171 (5%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
               +F++ I+D P GRIVF+LY +  P T +NFR L TG+ G G        Y + +FH
Sbjct: 2   MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFH 53

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+  FM+Q GDF+  NGTGG+SIYG  F DENF++KH +P LLSMAN G +TNGSQFFI
Sbjct: 54  RVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFI 113

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           TT P   LDG HVVFG V+ G ++V  +E        +    +++  C  +
Sbjct: 114 TTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSAS-GKTNATIKITDCGTV 163

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  269 bits (691), Expect = 3e-92
 Identities = 81/175 (46%), Positives = 97/175 (55%), Gaps = 9/175 (5%)

Query: 2   KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
           K      YFDV  ++  LGRIV +L  DI P T +NFR LC   KG G        Y   
Sbjct: 24  KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGS 75

Query: 62  VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
            FHR++ GFM+Q GD++  NGTGG SIYG  F DENFELKH +  +LSMAN G  TNGSQ
Sbjct: 76  TFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQ 135

Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
           FFIT      LD  HVVFG VV G +VV  I     +    +    + +  C  L
Sbjct: 136 FFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  265 bits (679), Expect = 1e-90
 Identities = 85/174 (48%), Positives = 106/174 (60%), Gaps = 9/174 (5%)

Query: 2   KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNI 61
            ++ P  +FD+ +   PLGR+ FEL++D  P T ENFRAL TGEKG G        Y   
Sbjct: 19  GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGS 70

Query: 62  VFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQ 121
            FHR++ GFM Q GDF+  NGTGG+SIYG  FEDENF LKH  P +LSMAN G +TNGSQ
Sbjct: 71  CFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQ 130

Query: 122 FFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           FFI T     LDG HVVFG V  G N+V  +E        +  + + +  C +L
Sbjct: 131 FFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN-GKTSKKITIADCGQL 183

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  263 bits (675), Expect = 4e-90
 Identities = 83/179 (46%), Positives = 99/179 (55%), Gaps = 16/179 (8%)

Query: 5   RPRCYFDVE-----ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYL 59
             + +FDVE      ++  +GRIVF L+    P T +NFR LC    G G        Y 
Sbjct: 2   MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YR 53

Query: 60  NIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNG 119
              FHR++  FMIQ GDF+ GNGTGG SIYG  F DENF  KHD+  +LSMAN G +TNG
Sbjct: 54  ESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNG 113

Query: 120 SQFFITTQPAPHLDGVHVVFGHVV--SGQNVVSHIENLPVDK-MSRPLQDVRVVKCNEL 175
           SQFFITT     LDG HVVFG V      +VV  IE L       R     ++V C EL
Sbjct: 114 SQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  234 bits (599), Expect = 1e-78
 Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 13/156 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I   L+   C  T +NF                N +Y N +FHRV+K FM+Q+GD S
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHS-----------INGYYNNCIFHRVIKHFMVQTGDPS 62

Query: 79  VGNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G+GTGGESI+G  FEDE F  L H +PF++SMAN G +TNGSQFFITT P P LD  H 
Sbjct: 63  -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173
           VFG V  G  +V  IE +  DK  +PL+D++++   
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK 157

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  234 bits (600), Expect = 2e-78
 Identities = 69/196 (35%), Positives = 93/196 (47%), Gaps = 21/196 (10%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G IV ELY    P TC+NF  L    +G         +Y    FHR++K FMIQ GD +
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT 68

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LDG H 
Sbjct: 69  -GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEKRKASPTSASSD 197
           +FG V  G  +V+ +  +  +   RP+ DV+++K                    +   S 
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS--------GGGGSGGGSGGGSG 179

Query: 198 ESDKEEEEKEEGEQTD 213
               +     E     
Sbjct: 180 GGSGDGGAFPEIHVAQ 195

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  232 bits (593), Expect = 1e-77
 Identities = 76/171 (44%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
            P+   D  I    +G I  +L+   CP T ENF               +N +Y    FH
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-----------RNGYYNGHTFH 64

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFF 123
           R++KGFMIQ+GD + G G GGESI+GG FEDE +  L+HD P+ LSMAN G +TNGSQFF
Sbjct: 65  RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKCN 173
           IT  P P LD  H VFG V  G  VV  I N+ V+ K  +P +DV ++   
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT 174

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  231 bits (592), Expect = 1e-77
 Identities = 67/156 (42%), Positives = 89/156 (57%), Gaps = 13/156 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G IV ELY    P TC+NF  L    +G         +Y    FHR++K FMIQ GD +
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT 68

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LDG H 
Sbjct: 69  -GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHT 127

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN 173
           +FG V  G  +V+ +  +  +   RP+ DV+++K  
Sbjct: 128 IFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  223 bits (571), Expect = 5e-74
 Identities = 67/155 (43%), Positives = 88/155 (56%), Gaps = 13/155 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG    ELY    P TC NF  LC  E G          Y N +FHRV+  F+IQ GD +
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT 95

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG+SIYG  FEDE N ELKH    +LSM+N G +TN SQFFIT  P PHLDG H 
Sbjct: 96  -GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           +F  V      + +I ++     ++P+ D+++++ 
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  219 bits (559), Expect = 2e-72
 Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 17/173 (9%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           R   YF         G + FEL+   CP  C+NF AL             + +Y N +FH
Sbjct: 11  RENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS-----------ASGYYKNTIFH 59

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENF-ELKHDEPFLLSMANRGK----DTNG 119
           + +KGF+IQ GD + G G GGESIYG  F+DE + ELK+D   +LSMA++G     +TNG
Sbjct: 60  KNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNG 118

Query: 120 SQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           SQFFIT    P L+G +V+FG ++ G   ++ +EN P DK  +P+ ++ +   
Sbjct: 119 SQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  215 bits (549), Expect = 3e-71
 Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 14/156 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I  E++ +  P TCENF ALC            + +Y   +FHR +KGFM+Q+GD +
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC-----------ASNYYNGCIFHRNIKGFMVQTGDPT 57

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG SI+G  FEDE +  LKH+   ++SMAN G +TNGSQFFIT    PHLD  + 
Sbjct: 58  -GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116

Query: 138 VFGHVVSGQNVVSHIENLPVDKMS-RPLQDVRVVKC 172
           VFG V+ G   +  +E LPV++ + RPL DV +   
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  212 bits (543), Expect = 9e-70
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 28/203 (13%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G +  EL++D+ P  C++F  LC  +           ++ + +FHR ++ FMIQ G   
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAE 63

Query: 79  V----GNGTGGESIY-------GGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITT 126
           +          +S         G  FEDE +  L H    +LSMAN GK +N S+FFIT 
Sbjct: 64  LRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITF 123

Query: 127 QPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKAKEK 186
           +   HL+  H +FG VV G +V+   E L  DK  +PL+  +V +    V K+  +   K
Sbjct: 124 KSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEII--VFKNPFEDARK 181

Query: 187 RKASPTSASSDESDKEEEEKEEG 209
                     +E +KE+++ E  
Sbjct: 182 EM---EDEKREEEEKEKKKLENA 201

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  211 bits (539), Expect = 2e-69
 Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 14/156 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G I  EL+S   P  C NF  LC              +Y N +FHRVV GF++Q GD +
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPT 81

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G+GGESIYG  F+DE +  L+ +   L++MAN G   NGSQFF T   A  L+  H 
Sbjct: 82  -GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140

Query: 138 VFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           +FG V       +  +  + +D   RP    ++  C
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  208 bits (531), Expect = 6e-68
 Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 21/182 (11%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G +  EL+ D+ P TCENF  LC  +K          +Y   +FHR ++ F+IQ GD +
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT 76

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G GTGGES +G  F+DE    L H    +LSMAN G ++N SQFFIT +   +LD  H 
Sbjct: 77  -GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135

Query: 138 VFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC-------NELVLKSKLKAKEKRKA 189
           +FG VV G +V++ +EN+  D K  RP +++R+           E   +   + K + K 
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQERKTQLKV 195

Query: 190 SP 191
           +P
Sbjct: 196 AP 197

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  201 bits (512), Expect = 3e-65
 Identities = 65/160 (40%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH----YLNIVFHRVVKGFMIQS 74
            G I   L+ +  P T  NF  L  G K               Y   VFHRV++GFMIQ 
Sbjct: 32  RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQG 91

Query: 75  GDFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLD 133
           GD   G G GG    G  F DE + EL+ D+P+LL+MAN G  TNGSQFFIT    PHL+
Sbjct: 92  GD-PTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147

Query: 134 GVHVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVRVVK 171
             H +FG V+    Q VV  I     D   RP   V +  
Sbjct: 148 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  189 bits (481), Expect = 5e-60
 Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 37/221 (16%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG +  EL++  CP+ C NF  LC              +Y+N +FHRVVK F++Q GD +
Sbjct: 30  LGDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPT 78

Query: 79  VGNGTGG--ESIYGGTFEDE-NFELKHDEPFLLSMANRGKD--------------TNGSQ 121
            G G GG   +  G  F+ E +  LK     L+ +AN G+               TNG+Q
Sbjct: 79  -GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQ 137

Query: 122 FFITTQPAPHLDGVHVVFGHVVS-GQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSK 180
           FFIT   A  L+  + +FG V       +    +L V K  RP+    +   +  VL + 
Sbjct: 138 FFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVD--VLWNP 195

Query: 181 LKAKEKRKASPTSASSDESDKEEEEKEEGEQTDSEKEAKKR 221
            +    R+      +     +++E K          E + R
Sbjct: 196 FEDLVPRRLPDAPPA-----QKDERKRARAAGGRTTEGRAR 231

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  139 bits (352), Expect = 2e-41
 Identities = 49/167 (29%), Positives = 66/167 (39%), Gaps = 29/167 (17%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G I  EL     P T ENF      +KG         HY   +FHRV+ GFMIQ G F 
Sbjct: 12  HGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMIQGGGFE 60

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
                   +       +E N  LK+D    ++MA      +  +QFFI       L+   
Sbjct: 61  -PGLKQKPT--DAPIANEANNGLKNDTYT-IAMARTNDPHSATAQFFINVNDNEFLNHSS 116

Query: 136 -------HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 171
                  + VFG VV GQ++V  I+ +           P  DV + K
Sbjct: 117 PTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK 163

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  135 bits (342), Expect = 6e-40
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 29/167 (17%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G IV + + D  P T +NF   C   +G          Y N +FHRV+ GFMIQ G F 
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMIQGGGF- 55

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
                  +       ++E N  LK+     L+MA  +   +  +QFFI       L+   
Sbjct: 56  --EPGMKQKATKEPIKNEANNGLKNTRGT-LAMARTQAPHSATAQFFINVVDNDFLNFSG 112

Query: 136 -------HVVFGHVVSGQNVVSHIENLPVDK----MSRPLQDVRVVK 171
                  + VF  VV G + V  I+ +   +       P +DV +  
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  133 bits (338), Expect = 2e-39
 Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 26/164 (15%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G I  EL     P++ +NF        G          Y N  FHRV+ GFMIQ G F+
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMIQGGGFT 61

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMA-NRGKDTNGSQFFITTQPAPHLDGV- 135
                  +       ++E +  L++     ++MA    KD+  SQFFI       LD   
Sbjct: 62  -EQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQ 117

Query: 136 ----HVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVK 171
               + VFG VV G +V   I  +P   +      P + V ++ 
Sbjct: 118 RDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 161

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  112 bits (282), Expect = 3e-29
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 46/175 (26%)

Query: 13  EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMI 72
           +  +I        L     P+T  NF  L   E+           Y  +   R   GF++
Sbjct: 181 DNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRS-DGFVV 228

Query: 73  QSGDFSVGNGTG--------------------GESIYGGTFED-----ENFELKHDEPFL 107
           Q+GD                                YG T E+         +  +    
Sbjct: 229 QTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGT 288

Query: 108 LSMANRGK--DTNGSQFFI-------TTQPAPHLDGVHVVFGHVVSGQNVVSHIE 153
           ++MA      D+  SQ F        T   +  LDG + VFG+V   ++ ++ ++
Sbjct: 289 MAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 201 KEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSEKEAKKRKK 260
           + +   +E E     +E ++++  + D   K  + ++ E+ +K+  E    + E +  K 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKN 134

Query: 261 HKKDKKKRKK 270
              ++   K 
Sbjct: 135 KINNRIADKA 144

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 194 ASSDESDKE--------EEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKK--SKYEEEEEK 243
           A +D   +E        EE+++  ++ D        ++ ++  KK  ++   +  E+ EK
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 244 EEGEQTDSEKEAKK 257
            +     ++K   +
Sbjct: 134 NKINNRIADKAFYQ 147

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 210 EQTDSEKEAKK--RKKHKKDKKKKKKKSKYEEEEEKEEGEQTDSE---KEAKKRKKHKKD 264
           ++   E E+ +  R++ +K  ++    SK  E+E +E+ ++   E   +++++ +K+K +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 265 KKKRKKK 271
            +   K 
Sbjct: 138 NRIADKA 144

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 191 PTSASSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKDKKKKKKKSKYEEEE--------- 241
             S S    D + +++EEG  + +E+ AKK+++ KK  K      + E ++         
Sbjct: 8   AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67

Query: 242 ---------EKEEGEQTDSEKEAKKRKKHKKDKKKRKKKS 272
                    E +E ++ D + +        K KKK+KKK 
Sbjct: 68  ARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 177  LKSKLKAKEKRKASPTSA-SSDESDKEEEEKEEGEQTDSEKEAKKRKKHKKD--KKKKKK 233
            L  K+   E   ++ T    SD       E+E    T+     ++     +    + + +
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 234  KSKYEEEEEKEEGEQTDSEKEAKKRKKHKKDKKKRKKK 271
            K   EE  +K + E      E K++    K +K+   +
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	95.52
3kop_A	188	Uncharacterized protein; protein with A cyclophili	93.36
1zx8_A	136	Hypothetical protein TM1367; structural genomics,	85.31

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=6.1e-58  Score=390.98  Aligned_cols=173  Identities=68%  Similarity=1.215  Sum_probs=167.6

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..||+|||||+|++|++|+|+|+||++.||+||+||+.||+|+.|.|+..++.+||+|+.||||+|+|||||||+..++|
T Consensus         7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   86 (179)
T 2wfi_A            7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNG   86 (179)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCC
Confidence            36999999999999999999999999999999999999999999988878889999999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +++.++||..|++|++.+.|+.+|+|||||.++++|+||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        87 ~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~  166 (179)
T 2wfi_A           87 RGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASK  166 (179)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSC
T ss_pred             CCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             CccCeEEeEeeee
Q psy17824        163 PLQDVRVVKCNEL  175 (272)
Q Consensus       163 P~~~i~I~~cg~l  175 (272)
                      |..+|+|.+||+|
T Consensus       167 P~~~v~I~~~G~l  179 (179)
T 2wfi_A          167 PFAEVRILSCGEL  179 (179)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCeEEEeCeeC
Confidence            9999999999986

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-57  Score=392.35  Aligned_cols=175  Identities=69%  Similarity=1.153  Sum_probs=168.1

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||+|++|++|+|+|+||++.||+||+||+.||+|+.|+|+..++.+||+|+.||||+|+|||||||+..++|
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            57999999999999999999999999999999999999999999988888889999999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +++.++||..|++|++.++|+.+|+|||||.++++|+||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             CccCeEEeEeeeecc
Q psy17824        163 PLQDVRVVKCNELVL  177 (272)
Q Consensus       163 P~~~i~I~~cg~l~~  177 (272)
                      |..+|+|.+||+|.+
T Consensus       177 P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          177 PYADVRVIDCGVLAT  191 (192)
T ss_dssp             BSSCEEEEEEEECC-
T ss_pred             CcCCeEEEEeEEEcc
Confidence            999999999999964

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.9e-57  Score=387.42  Aligned_cols=173  Identities=62%  Similarity=1.072  Sum_probs=165.9

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||.|+++++|+|+|+||++.||+||+||+.||+|+.|.|+..++.+||+|+.||||+|+|||||||+..++|+
T Consensus         5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   84 (177)
T 1a58_A            5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   84 (177)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSS
T ss_pred             CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCC
Confidence            69999999999999999999999999999999999999999888775545667999999999999999999999889999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++.++||..|++|++.+.|+.+|+|||||.++++|+||||||+.++||||+.|+|||+|++||+||++|+.++++.+++|
T Consensus        85 gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P  164 (177)
T 1a58_A           85 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  164 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccCeEEeEeeeec
Q psy17824        164 LQDVRVVKCNELV  176 (272)
Q Consensus       164 ~~~i~I~~cg~l~  176 (272)
                      ..+|+|.+||+|+
T Consensus       165 ~~~v~I~~~G~l~  177 (177)
T 1a58_A          165 LADVVILNCGELV  177 (177)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCeEEEEeEEEC
Confidence            9999999999984

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.9e-55  Score=373.78  Aligned_cols=171  Identities=54%  Similarity=0.927  Sum_probs=162.2

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|+|||||.|+++++|+|+|+||++.||+||+||+.||+++.|+|+ .++..||+|+.||||+|+|||||||+..++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCCC
Confidence            48999999999999999999999999999999999999998777664 34677999999999999999999999889999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++.++||..|++|++.++|+.+|+||||+.++++|+||||||+.++||||+.|+|||+|++||+||++|+.+++ .+++|
T Consensus        81 gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  159 (173)
T 2igv_A           81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKP  159 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 56899


Q ss_pred             ccCeEEeEeeeec
Q psy17824        164 LQDVRVVKCNELV  176 (272)
Q Consensus       164 ~~~i~I~~cg~l~  176 (272)
                      ..+|+|.+||+|.
T Consensus       160 ~~~v~I~~~g~l~  172 (173)
T 2igv_A          160 VKDCMIADCGQLK  172 (173)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCEEEEEeEEEc
Confidence            9999999999984

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=2.5e-55  Score=372.10  Aligned_cols=169  Identities=58%  Similarity=0.991  Sum_probs=159.7

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|+|||||.|+++++|+|+|+||++.||+||+||+.||+|+ |+|+ .++..+|+|+.||||+|+|||||||+..++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            589999999999999999999999999999999999999865 4442 34667799999999999999999999889999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++.++||..|++|++.+.|+.+|+||||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.+++ .+++|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 67999


Q ss_pred             ccCeEEeEeeee
Q psy17824        164 LQDVRVVKCNEL  175 (272)
Q Consensus       164 ~~~i~I~~cg~l  175 (272)
                      ..+|+|.+||+|
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999986

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=1.1e-54  Score=366.21  Aligned_cols=163  Identities=48%  Similarity=0.861  Sum_probs=156.0

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      .+|+|||||.|++|++|+|+|+||++.||+||+||+.||+|..         ++ |+|+.||||+|+|||||||+..+++
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~---------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH---------GFGYKDSIFHRVIPQFMLQGGDFTRHNG   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccC---------CCcccCCEEEEEECCCeEEeCCCCCCCC
Confidence            4899999999999999999999999999999999999998754         45 9999999999999999999888999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      .++.++||..|++|++.++|..+|+|+||+.++++++||||||+.++||||++|+|||+|++||+||++|+.++++ +++
T Consensus        72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~  150 (164)
T 3pmp_A           72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK  150 (164)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred             CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 799


Q ss_pred             CccCeEEeEeeeec
Q psy17824        163 PLQDVRVVKCNELV  176 (272)
Q Consensus       163 P~~~i~I~~cg~l~  176 (272)
                      |..+|+|.+||+|.
T Consensus       151 P~~~v~I~~cg~l~  164 (164)
T 3pmp_A          151 TNATIKITDCGTVA  164 (164)
T ss_dssp             CSSCEEEEEEEEC-
T ss_pred             cccCEEEEeCeEEC
Confidence            99999999999984

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=7.1e-55  Score=373.77  Aligned_cols=170  Identities=56%  Similarity=0.967  Sum_probs=160.8

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||.|+++++|+|+|+||++.||+||+||+.||+|+.|+|+ .++..+|+|+.||||+|+|||||||+..++|
T Consensus        17 ~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G   95 (186)
T 2poy_A           17 QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDG   95 (186)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCC
Confidence            478999999999999999999999999999999999999998888765 3577889999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +++.++||..|++|++.+.|..+|+||||+.++++|+||||||+.++||||+.|+|||+|++||+||++|+.+++ .+++
T Consensus        96 ~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~  174 (186)
T 2poy_A           96 TGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGK  174 (186)
T ss_dssp             SCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSC
T ss_pred             CCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 5789


Q ss_pred             CccCeEEeEeee
Q psy17824        163 PLQDVRVVKCNE  174 (272)
Q Consensus       163 P~~~i~I~~cg~  174 (272)
                      |..+|+|.+||+
T Consensus       175 P~~~v~I~~cG~  186 (186)
T 2poy_A          175 PTKSVCITASGV  186 (186)
T ss_dssp             CSSCEEEEEEEC
T ss_pred             CCCCEEEEeCCC
Confidence            999999999995

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=6e-55  Score=369.95  Aligned_cols=163  Identities=53%  Similarity=0.879  Sum_probs=156.6

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      ..+|+|||||.|++|++|+|+|+||++.||+||+||+.||+|..         +| |+|+.||||+|+|||||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~---------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH---------GFGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCC---------CcccCCCEEEEEECCCEEecCCccCCC
Confidence            36899999999999999999999999999999999999998754         45 999999999999999999988899


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~  161 (272)
                      |+++.++||..|++|++.+.|. +|+||||+.++++|+||||||+.++|+||+.|+|||+|++||+||++|+.++++.++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCccCeEEeEeeee
Q psy17824        162 RPLQDVRVVKCNEL  175 (272)
Q Consensus       162 ~P~~~i~I~~cg~l  175 (272)
                      +|..+|+|.+||+|
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=5.5e-55  Score=372.12  Aligned_cols=170  Identities=49%  Similarity=0.846  Sum_probs=160.7

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||.+++|++|+|+|+||++.||+||+||+.||++..|.   .++..+|+|+.||||+|+|||||||+..++|
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G   84 (177)
T 1mzw_A            8 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG   84 (177)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCC
Confidence            4689999999999999999999999999999999999999876543   1245679999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +|+.++||..|++|++.+.|+.+|+||||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        85 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~  164 (177)
T 1mzw_A           85 TGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNK  164 (177)
T ss_dssp             CCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGC
T ss_pred             CCCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             CccCeEEeEeeee
Q psy17824        163 PLQDVRVVKCNEL  175 (272)
Q Consensus       163 P~~~i~I~~cg~l  175 (272)
                      |..+|+|.+||+|
T Consensus       165 P~~~v~I~~cG~l  177 (177)
T 1mzw_A          165 PKLPVVISQCGEM  177 (177)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCEEEEeceeC
Confidence            9999999999986

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.9e-54  Score=363.88  Aligned_cols=162  Identities=54%  Similarity=0.889  Sum_probs=155.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      .+|+|||||.|++|++|+|+|+||++.||+||+||+.||+|+.         +| |+|+.||||+|+|||||||+..++|
T Consensus         2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~---------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g   72 (165)
T 2z6w_A            2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK---------GFGYKGSTFHRVIPSFMCQAGDFTNHNG   72 (165)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCC---------CccCcCCEEEEEECCCEEEeCCccCCCC
Confidence            4899999999999999999999999999999999999997654         46 9999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +++.++||..|++|++.+.|.++|+||||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.+++ .+++
T Consensus        73 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~  151 (165)
T 2z6w_A           73 TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGR  151 (165)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSC
T ss_pred             CCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             CccCeEEeEeeee
Q psy17824        163 PLQDVRVVKCNEL  175 (272)
Q Consensus       163 P~~~i~I~~cg~l  175 (272)
                      |..+|+|.+||+|
T Consensus       152 P~~~v~I~~~g~l  164 (165)
T 2z6w_A          152 TSKKIVITDCGQL  164 (165)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CCCcEEEEEeEEE
Confidence            9999999999998

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=4.2e-54  Score=365.01  Aligned_cols=164  Identities=55%  Similarity=0.883  Sum_probs=155.7

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      ..+|+|||||.+++|++|+|+|+||++.||+||+||+.||++..         ++ |+|+.||||+|+|||||||+..++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~---------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER---------GFGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCC---------CceECCCEEEEEECCCEEEcCCccCCC
Confidence            46899999999999999999999999999999999999997643         45 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~  161 (272)
                      |+++.++||..|++|++.+.|+.+|+||||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.+++ .++
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~-~~~  157 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSG  157 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC-TTC
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 468


Q ss_pred             CCccCeEEeEeeeec
Q psy17824        162 RPLQDVRVVKCNELV  176 (272)
Q Consensus       162 ~P~~~i~I~~cg~l~  176 (272)
                      +|..+|+|.+||+|.
T Consensus       158 ~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          158 KVKEPVIISRCGELI  172 (172)
T ss_dssp             CCSSCEEEEEEEEEC
T ss_pred             CCCCCEEEEEeEeEC
Confidence            999999999999983

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=5.2e-54  Score=364.82  Aligned_cols=164  Identities=51%  Similarity=0.832  Sum_probs=155.8

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      ..+|+|||||.|++|++|+|+|+||++.||+||+||+.||+|+.         ++ |+|+.||||+|+|||||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~---------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK---------GFGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccC---------CceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            46899999999999999999999999999999999999998754         44 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~  161 (272)
                      |+++.++||..|++|++.+.|+.+|+|+||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.++++ ++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~  158 (173)
T 2r99_A           80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DG  158 (173)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TC
T ss_pred             CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985 68


Q ss_pred             CCccCeEEeEeeeec
Q psy17824        162 RPLQDVRVVKCNELV  176 (272)
Q Consensus       162 ~P~~~i~I~~cg~l~  176 (272)
                      +|..+|+|.+||+|.
T Consensus       159 ~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          159 KPKQKVIIADCGEYV  173 (173)
T ss_dssp             CCSSCEEEEEEEECC
T ss_pred             CCCCCeEEEEeeeEC
Confidence            999999999999983

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-54  Score=371.41  Aligned_cols=169  Identities=51%  Similarity=0.874  Sum_probs=159.6

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccce-eeCcEEEEeecCceeeecCccCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLH-YLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~-Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      .+|+|||||.|++|++|+|+|+||.+.||+||+||+.||+|+.         +| |+|+.||||+++|||||||+..++|
T Consensus        14 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~---------g~~Y~g~~FhRvi~~f~iQgGd~~~~~g   84 (188)
T 3ich_A           14 VTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK---------GFGYKNSKFHRVIKDFMIQGGDFTRGDG   84 (188)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT---------SCSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             cCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccC---------CccccCCEEEEEECCCEEEcCCccCCCC
Confidence            4689999999999999999999999999999999999998754         45 9999999999999999999888999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +|+.++||..|++|++.+.|+.+|+|||||.++++|+||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        85 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~  164 (188)
T 3ich_A           85 TGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDK  164 (188)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CccCeEEeEeeeecccccc
Q psy17824        163 PLQDVRVVKCNELVLKSKL  181 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~~~~  181 (272)
                      |..+|+|.+|++|....++
T Consensus       165 P~~~v~I~~~~~l~~~~Pf  183 (188)
T 3ich_A          165 PLKDVIIADCGKIEVEKPF  183 (188)
T ss_dssp             BSSCEEEEEEEEEEEEEEE
T ss_pred             ECCCEEEEEeEEEecCCCC
Confidence            9999999999999544443

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=9.8e-54  Score=366.88  Aligned_cols=170  Identities=51%  Similarity=0.881  Sum_probs=161.1

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|+|||||.|+++++|+|+|+||++.||+||+||+.||++..|        .+|+|+.||||+++|||||||+..+++.
T Consensus        11 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   82 (185)
T 4fru_A           11 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKG--------FGYKDSKFHRVIKDFMIQGGDFTRGDGT   82 (185)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             cCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCC--------CeEcCCEEEEeeCCCeEEECCCCCCCCC
Confidence            57899999999999999999999999999999999999976432        2699999999999999999999889999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++.++||..|++|++.+.|+.+|+|+||+.++++++|||||++.++||||++|+|||+|++||+||++|+.++++.+++|
T Consensus        83 gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P  162 (185)
T 4fru_A           83 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKP  162 (185)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCeEEeEeeeecccccc
Q psy17824        164 LQDVRVVKCNELVLKSKL  181 (272)
Q Consensus       164 ~~~i~I~~cg~l~~~~~~  181 (272)
                      ..+|+|.+||+|....++
T Consensus       163 ~~~v~I~~~g~l~~~~Pf  180 (185)
T 4fru_A          163 LKDVTIADCGKIEVEKPF  180 (185)
T ss_dssp             SSCEEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEceEEecCCCC
Confidence            999999999999765554

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=4.2e-53  Score=362.42  Aligned_cols=165  Identities=52%  Similarity=0.914  Sum_probs=156.4

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+||||+.|+++++|+|+|+||++.||+||+||+.||++..|++        |+|+.||||+++|||||||+..+++
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~--------Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS--------STTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc--------cCCCEEEEccCCcEEEeCCCCCCCC
Confidence            36899999999999999999999999999999999999998754433        9999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      .++.++||..|++|++.+.|+.+|+|+||+.++++++||||||+.++|+||+.|+|||+|++||+||++|+++++ .+++
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~  170 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGK  170 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSC
T ss_pred             CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997 5789


Q ss_pred             CccCeEEeEeeeec
Q psy17824        163 PLQDVRVVKCNELV  176 (272)
Q Consensus       163 P~~~i~I~~cg~l~  176 (272)
                      |..+|+|.+||+|.
T Consensus       171 P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          171 TSKKITIADCGQLE  184 (184)
T ss_dssp             CSSCEEEEEEEECC
T ss_pred             CcCCeEEEeCeEEC
Confidence            99999999999983

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.8e-53  Score=363.54  Aligned_cols=165  Identities=48%  Similarity=0.781  Sum_probs=156.8

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||.|++|++|+|+|+||++.||+||+||+.||+|..|++        |+|+.||||+|+|||||||+..+++
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~--------Y~g~~FhRvi~~f~iQgGd~~~~~g   96 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTFHRIIPGFMVQGGDYTAHNG   96 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSS--------STTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCc--------ccCCEEEEEeCCCEEEeCCCCCCCC
Confidence            47899999999999999999999999999999999999998754432        9999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      .++.++||..|++|++.+.|+.+|+|+||+.++++++|||||++.++|+||++|+|||+|++||+||++|+.++++ +++
T Consensus        97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~  175 (193)
T 3k2c_A           97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQ  175 (193)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred             cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996 689


Q ss_pred             Cc--cCeEEeEeeeec
Q psy17824        163 PL--QDVRVVKCNELV  176 (272)
Q Consensus       163 P~--~~i~I~~cg~l~  176 (272)
                      |.  .+|+|.+||+|.
T Consensus       176 P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          176 VKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCTTCCEEEEEEEECC
T ss_pred             CccCccEEEEEceEeC
Confidence            99  999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.9e-53  Score=373.64  Aligned_cols=170  Identities=47%  Similarity=0.816  Sum_probs=161.4

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|||||.|+++++|+|+|+||++.||+||+||+.||++..|.+   ++..+|+|+.||||+|+|||||||+..++|
T Consensus        57 ~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G  133 (229)
T 1z81_A           57 PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNG  133 (229)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSS
T ss_pred             CCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCC
Confidence            36899999999999999999999999999999999999999876543   356689999999999999999999988999


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEe--cCHHHHHHHhcCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVV--SGQNVVSHIENLPVDKM  160 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi--~G~dVl~~I~~~~~d~~  160 (272)
                      +|+.++||..|++|++.+.|+.+|+|+||+.++++++||||||+.++|+||+.|+|||+|+  +||+||++|+.++++.+
T Consensus       134 ~Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~  213 (229)
T 1z81_A          134 SGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPY  213 (229)
T ss_dssp             CCCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTT
T ss_pred             CCCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999  99999999999999887


Q ss_pred             -CCCccCeEEeEeeee
Q psy17824        161 -SRPLQDVRVVKCNEL  175 (272)
Q Consensus       161 -~~P~~~i~I~~cg~l  175 (272)
                       ++|..+|+|.+||+|
T Consensus       214 ~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          214 IYKPKIPINVVECGEL  229 (229)
T ss_dssp             TCCBSSCEEEEEEEEC
T ss_pred             CCCCCCCeEEEeCeeC
Confidence             999999999999986

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.9e-52  Score=353.78  Aligned_cols=161  Identities=52%  Similarity=0.860  Sum_probs=121.9

Q ss_pred             eEEEEEEEC--C---eeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCC
Q psy17824          7 RCYFDVEIS--D---IPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         7 ~v~~di~v~--~---t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      +|||||.|+  +   |++|+|+|+||++.||+||+||+.||+|..|+|        |+|+.||||+|+|||||||+..++
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~--------Y~g~~fhRvi~~f~iQgGd~~~~~   75 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTRGN   75 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS--------STTCBCCEEETTTEEEECC-----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcc--------cCCCEEEEEeCCCEEEeCCcCCCC
Confidence            899999998  5   555999999999999999999999998755432        999999999999999999988899


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec--CHHHHHHHhcCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVDK  159 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~--G~dVl~~I~~~~~d~  159 (272)
                      |+++.++||..|++|++.+.|+.+|+||||+.++++++||||||+.++||||++|+|||+|++  ||+||++|++++++.
T Consensus        76 g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~  155 (172)
T 2c3b_A           76 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  155 (172)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999976


Q ss_pred             CC-CCccCeEEeEeeee
Q psy17824        160 MS-RPLQDVRVVKCNEL  175 (272)
Q Consensus       160 ~~-~P~~~i~I~~cg~l  175 (272)
                      .. +|..+|+|.+||+|
T Consensus       156 ~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          156 GSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCccCCCCeEEEeCeeC
Confidence            55 99999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=7.3e-52  Score=366.58  Aligned_cols=178  Identities=29%  Similarity=0.451  Sum_probs=154.9

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCcc--CCcc----c--e-eeCcEEEEeecCceee
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKT--TGKN----L--H-YLNIVFHRVVKGFMIQ   73 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~--~~k~----~--~-Y~g~~f~Rvi~~f~iq   73 (272)
                      ..+|+|||||.|.+|++|+|+|+||.+.||+||+||+.||+|...+-.+  +++.    +  | |+|+.||||+++||||
T Consensus        12 ~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQ   91 (234)
T 2ose_A           12 GKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIV   91 (234)
T ss_dssp             CSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEE
T ss_pred             CCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEE
Confidence            4689999999999999999999999999999999999999976211000  0011    3  5 9999999999999999


Q ss_pred             ecCccCCCCCCCCccCCCC-----CCCCCcCcCCCcceeEeeec----cCCCCCccEEEEEcCC------CCCCCCCCcE
Q psy17824         74 SGDFSVGNGTGGESIYGGT-----FEDENFELKHDEPFLLSMAN----RGKDTNGSQFFITTQP------APHLDGVHVV  138 (272)
Q Consensus        74 gGd~~~~~g~gg~s~~g~~-----~~de~~~~~h~~~G~lsm~~----~g~~s~~SqFfItl~~------~p~ld~~~~V  138 (272)
                      |||+..++|+|+.++||..     |+  ++.+.|..+|+||||+    .++++++||||||+.+      +||||+.|+|
T Consensus        92 gGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tV  169 (234)
T 2ose_A           92 SGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVV  169 (234)
T ss_dssp             ECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEE
T ss_pred             cCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeE
Confidence            9998889999999999987     66  6789999999999999    8999999999999999      9999999999


Q ss_pred             EEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEeeeecccccch
Q psy17824        139 FGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLK  182 (272)
Q Consensus       139 FG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg~l~~~~~~~  182 (272)
                      ||+|++||+||++|+.++++.+++|..+|+|.+|++|..+++..
T Consensus       170 FG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~~  213 (234)
T 2ose_A          170 IGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQAQ  213 (234)
T ss_dssp             EEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHHC
T ss_pred             EEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCcccc
Confidence            99999999999999999999889999999999999998776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=3e-51  Score=383.60  Aligned_cols=175  Identities=60%  Similarity=0.982  Sum_probs=166.7

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|+|||||.|++++.|+|+|+||++.||+||+||+.||+|+.|+|...+...+|+||.||||+|||||||||+..++|+
T Consensus        14 ~~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~   93 (370)
T 1ihg_A           14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   93 (370)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCC
Confidence            38999999999999999999999999999999999999999999876656677999999999999999999999889999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ||.++||..|++|++.+.|+.+|+|+||+.++++||||||||+.++||||+.|+|||+|++||+||++|+.++++. ++|
T Consensus        94 g~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P  172 (370)
T 1ihg_A           94 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  172 (370)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999976 999


Q ss_pred             ccCeEEeEeeeecccc
Q psy17824        164 LQDVRVVKCNELVLKS  179 (272)
Q Consensus       164 ~~~i~I~~cg~l~~~~  179 (272)
                      ..+|+|.+|+++....
T Consensus       173 ~~~v~I~~~g~l~~~~  188 (370)
T 1ihg_A          173 AKLCVIAECGELKEGD  188 (370)
T ss_dssp             SSCEEEEEEEEECTTC
T ss_pred             ceeEEEEEEEEeccCc
Confidence            9999999999997543

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=4.1e-50  Score=344.07  Aligned_cols=162  Identities=41%  Similarity=0.702  Sum_probs=148.6

Q ss_pred             EEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCc
Q psy17824          8 CYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGES   87 (272)
Q Consensus         8 v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s   87 (272)
                      +++++.+. |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+. ++|+|+.+
T Consensus        15 ~~~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~s   81 (185)
T 2poe_A           15 YFQGVRII-TNYGDLKFELFCSQCPKACKNFLALS-----------ASGYYKNTIFHKNIKGFIIQGGDPT-GTGKGGES   81 (185)
T ss_dssp             CCCEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTEEEEEECTTSEEEEEETT-SSSSCCCB
T ss_pred             CceEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHh-----------ccCCCCCCEEEEEECCCEEEcCCCC-CCCCCCCc
Confidence            34555554 99999999999999999999999999           4678999999999999999999975 88899999


Q ss_pred             cCCCCCCCCC-cCcCCCcceeEeeeccC----CCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         88 IYGGTFEDEN-FELKHDEPFLLSMANRG----KDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        88 ~~g~~~~de~-~~~~h~~~G~lsm~~~g----~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      +||..|++|. +.+.|+.+|+||||+.+    +++++||||||++++|+||+.|+|||+|++||+||++|+.++++.+++
T Consensus        82 i~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  161 (185)
T 2poe_A           82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHK  161 (185)
T ss_dssp             TTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSC
T ss_pred             cCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCC
Confidence            9999999997 78999999999999999    999999999999999999999999999999999999999999998899


Q ss_pred             CccCeEEeEeeeecccccch
Q psy17824        163 PLQDVRVVKCNELVLKSKLK  182 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~~~~~  182 (272)
                      |..+|+|.+|+++.++++.+
T Consensus       162 P~~~v~I~~~~i~~dPf~d~  181 (185)
T 2poe_A          162 PIDEIIIKDIVIHSNPIADQ  181 (185)
T ss_dssp             BSSCCEEEEEEEECCC----
T ss_pred             cCCCeEEEEEEEECCCCCCc
Confidence            99999999999999887653

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=5.8e-50  Score=347.47  Aligned_cols=155  Identities=35%  Similarity=0.531  Sum_probs=139.4

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeec-----CccCCCCCCCCccC-
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSG-----DFSVGNGTGGESIY-   89 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgG-----d~~~~~g~gg~s~~-   89 (272)
                      .|++|+|+|+||++.||.||+||+.||           +.+||+|+.||||+++||||||     |+ .++|.|+.++| 
T Consensus        12 ~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp-~~~g~gg~si~~   79 (201)
T 3bo7_A           12 VTTQGSLNIELHADMAPRACDSFLRLC-----------AVKYFDDTIFHRCIRNFMIQGGRAELRQP-SKKKEVQQSPRS   79 (201)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBEEEEETTTEEEECCGGGCCC--------CCSSC
T ss_pred             EeCCCCEEEEEcCCCCcHHHHHHHHHH-----------hcCccCCCEEEEeeCCCEEEcCcccccCC-CCCCCCCccccc
Confidence            489999999999999999999999999           5679999999999999999999     96 47888999999 


Q ss_pred             ------CCCCCCC-CcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         90 ------GGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        90 ------g~~~~de-~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                            |..|++| ++.+.|+.+|+||||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        80 ~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  159 (201)
T 3bo7_A           80 ISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDK  159 (201)
T ss_dssp             CCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSC
T ss_pred             cccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCC
Confidence                  8899999 478999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CccCeEEeEeeeecccccch
Q psy17824        163 PLQDVRVVKCNELVLKSKLK  182 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~~~~~  182 (272)
                      |..+|+|.+|++|.++++..
T Consensus       160 P~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          160 PLKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             BSSCCBEEEEEEEECCC---
T ss_pred             cCCCeEEEEEEEEcCCccCH
Confidence            99999999999999888754

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-49  Score=343.28  Aligned_cols=157  Identities=41%  Similarity=0.660  Sum_probs=148.1

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+ .++|.|+.++||..|+
T Consensus        24 l~T~~G~I~ieL~~~~aP~tv~NF~~L~-----------~~g~Ydg~~FhRVi~~f~iQgGd~-~~~g~Gg~si~g~~f~   91 (197)
T 1zkc_A           24 LHTNKGDLNLELHCDLTPKTCENFIRLC-----------KKHYYDGTIFHRSIRNFVIQGGDP-TGTGTGGESYWGKPFK   91 (197)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEEEEEEETTTEEEECCT-TSSSSCCCBTTBSCBC
T ss_pred             EEeCCccEEEEEcCCCCcHHHHHHHHHH-----------hcCCCCCCEEEEEeCCCEEEcCCC-CCCCCCCCccCCCccc
Confidence            3499999999999999999999999999           567999999999999999999997 4788999999999999


Q ss_pred             CC-CcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC-CCCccCeEEeEe
Q psy17824         95 DE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM-SRPLQDVRVVKC  172 (272)
Q Consensus        95 de-~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~-~~P~~~i~I~~c  172 (272)
                      +| ++.+.|+.+|+|+||+.++++++||||||+.++|+||+.|+|||+|++||+||++|+.++++.+ ++|..+|+|.+|
T Consensus        92 dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~  171 (197)
T 1zkc_A           92 DEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT  171 (197)
T ss_dssp             CCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEE
T ss_pred             cccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEE
Confidence            99 4789999999999999999999999999999999999999999999999999999999999887 999999999999


Q ss_pred             eeecccccchh
Q psy17824        173 NELVLKSKLKA  183 (272)
Q Consensus       173 g~l~~~~~~~~  183 (272)
                      ++|.++++...
T Consensus       172 ~v~~dPf~d~~  182 (197)
T 1zkc_A          172 TVFVDPYEEAD  182 (197)
T ss_dssp             EEEECTTHHHH
T ss_pred             EEEcCCcccHH
Confidence            99998887553

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.3e-49  Score=334.20  Aligned_cols=153  Identities=45%  Similarity=0.735  Sum_probs=145.6

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+. ++|.++.++||..|++
T Consensus         6 ~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~d   73 (161)
T 2ok3_A            6 HTDVGDIKIEVFCERTPKTCENFLALC-----------ASNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFED   73 (161)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCC
T ss_pred             EeCCccEEEEEcCCCCcHHHHHHHHHh-----------hhcccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccc
Confidence            499999999999999999999999999           4578999999999999999999975 7888999999999999


Q ss_pred             CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC-CCCccCeEEeEee
Q psy17824         96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM-SRPLQDVRVVKCN  173 (272)
Q Consensus        96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~-~~P~~~i~I~~cg  173 (272)
                      |.. .+.|+.+|+||||+.++++++|||||++.++||||+.|+|||+|++||+||++|++++++.+ ++|..+|+|.+|.
T Consensus        74 E~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~  153 (161)
T 2ok3_A           74 EYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDIT  153 (161)
T ss_dssp             CCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEE
T ss_pred             ccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEE
Confidence            985 78999999999999999999999999999999999999999999999999999999999887 9999999999999


Q ss_pred             eeccccc
Q psy17824        174 ELVLKSK  180 (272)
Q Consensus       174 ~l~~~~~  180 (272)
                      ++.++++
T Consensus       154 i~~~Pf~  160 (161)
T 2ok3_A          154 IHANPFA  160 (161)
T ss_dssp             EECCSCC
T ss_pred             EecCCCC
Confidence            9998875

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.2e-49  Score=342.03  Aligned_cols=158  Identities=42%  Similarity=0.679  Sum_probs=146.1

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .++.|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+. ++|.
T Consensus        37 ~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~-----------~~g~Y~g~~FhRVi~~f~iQgGd~~-~~g~   99 (196)
T 2b71_A           37 ERGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLC-----------EMGFYDNTIFHRVIPNFVIQGGDPT-GTGK   99 (196)
T ss_dssp             HSCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEEEEEEETTTEEEEEETT-SSSS
T ss_pred             CCcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHh-----------hcCCcCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            35777777     89999999999999999999999999           5678999999999999999999974 8889


Q ss_pred             CCCccCCCCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         84 GGESIYGGTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        84 gg~s~~g~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      |+.++||..|++|. ..+.|+.+|+|+||+.++++++||||||+.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus       100 gg~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  179 (196)
T 2b71_A          100 GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNK  179 (196)
T ss_dssp             CCCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCC
T ss_pred             CCCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCC
Confidence            99999999999995 58999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             CccCeEEeEeeeeccc
Q psy17824        163 PLQDVRVVKCNELVLK  178 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~  178 (272)
                      |..+|+|.+|.++.+|
T Consensus       180 P~~~i~I~~~~i~~dP  195 (196)
T 2b71_A          180 PIFDLKILRTSTAVNA  195 (196)
T ss_dssp             BSSCCEEEEEEC----
T ss_pred             CCCCeEEEEEEEecCC
Confidence            9999999999998765

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.2e-49  Score=334.30  Aligned_cols=155  Identities=44%  Similarity=0.760  Sum_probs=146.9

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .++.|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+ .+++.
T Consensus        10 ~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~fhRvi~~f~iQgGd~-~~~g~   72 (166)
T 2x7k_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA-----------RRGYYNGTKFHRIIKDFMIQGGDP-TGTGR   72 (166)
T ss_dssp             CCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH-----------HHTTTTTEECCEEETTTEEEECCT-TSSSS
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHH-----------hcCCCCCCEEEEEECCCEEEcCCC-CCCCC
Confidence            46778887     89999999999999999999999999           567999999999999999999997 47889


Q ss_pred             CCCccCCCCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         84 GGESIYGGTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        84 gg~s~~g~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      ++.++||..|++|. ..+.|..+|+|||||.++++++|||||++.++||||+.|+|||+|++||+||++|+.++++.+++
T Consensus        73 gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~  152 (166)
T 2x7k_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (166)
T ss_dssp             CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSC
T ss_pred             CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 48999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CccCeEEeEeeee
Q psy17824        163 PLQDVRVVKCNEL  175 (272)
Q Consensus       163 P~~~i~I~~cg~l  175 (272)
                      |..+|+|.+|.++
T Consensus       153 P~~~i~I~~~~i~  165 (166)
T 2x7k_A          153 PVDDVKIIKAYPS  165 (166)
T ss_dssp             BSSCCEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999886

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=9.3e-49  Score=336.99  Aligned_cols=156  Identities=42%  Similarity=0.666  Sum_probs=142.8

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccC-C---ccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTT-G---KNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGG   91 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~-~---k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~   91 (272)
                      .|++|+|+|+||++.||+||+||+.||+|+.+++... +   ..+||+|+.||||+|+|||||||+ .++|+++   ||.
T Consensus        29 ~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~-~g~G~gg---~g~  104 (191)
T 1w74_A           29 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP-TGTGRGG---PGY  104 (191)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT-TSSSSCC---SSC
T ss_pred             EecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC-CCCCCCC---CCC
Confidence            4999999999999999999999999999998864221 1   357999999999999999999996 5677776   588


Q ss_pred             CCCCC-CcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec--CHHHHHHHhcCCCCCCCCCccCeE
Q psy17824         92 TFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVR  168 (272)
Q Consensus        92 ~~~de-~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~--G~dVl~~I~~~~~d~~~~P~~~i~  168 (272)
                      .|++| ++.++|+.+|+|||||.++++|+||||||+.++||||+.|+|||+|++  ||+||++|+.++++.+++|..+|+
T Consensus       105 ~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~  184 (191)
T 1w74_A          105 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVV  184 (191)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCE
T ss_pred             ccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeE
Confidence            89999 578999999999999999999999999999999999999999999999  999999999999998899999999


Q ss_pred             EeEeeee
Q psy17824        169 VVKCNEL  175 (272)
Q Consensus       169 I~~cg~l  175 (272)
                      |.+|+++
T Consensus       185 I~~~~i~  191 (191)
T 1w74_A          185 IESITIS  191 (191)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999975

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=6.2e-49  Score=329.72  Aligned_cols=148  Identities=48%  Similarity=0.802  Sum_probs=141.7

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+ .++|.++.++||..|++
T Consensus        11 ~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~fhRvi~~f~iQgGd~-~~~g~gg~si~g~~~~d   78 (160)
T 2fu0_A           11 YTTMGDIHISLFYKECKKTVQNFSVHS-----------INGYYNNCIFHRVIKHFMVQTGDP-SGDGTGGESIWGNEFED   78 (160)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCT-TSSSSCCCCTTSSCBCC
T ss_pred             EecCccEEEEEeCCCChHHHHHHHHHh-----------ccCccCCCEEEEEECCCEEEeCCc-CCCCCCCCcccCCCccc
Confidence            499999999999999999999999999           567999999999999999999997 57889999999999999


Q ss_pred             CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEeee
Q psy17824         96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE  174 (272)
Q Consensus        96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg~  174 (272)
                      |.+ .+.|+++|+|+||+.++++++|||||++.++||||+.|+|||+|++||+||++|++++++.+++|..+|+|.+|.+
T Consensus        79 E~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v  158 (160)
T 2fu0_A           79 EFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  158 (160)
T ss_dssp             CCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEE
Confidence            988 6999999999999999999999999999999999999999999999999999999999998899999999999987


Q ss_pred             e
Q psy17824        175 L  175 (272)
Q Consensus       175 l  175 (272)
                      +
T Consensus       159 ~  159 (160)
T 2fu0_A          159 N  159 (160)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.7e-49  Score=334.54  Aligned_cols=159  Identities=48%  Similarity=0.796  Sum_probs=149.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|....++++..|++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+ .++|.
T Consensus        15 ~~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~-~~~g~   82 (176)
T 2a2n_A           15 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-----------RNGYYNGHTFHRIIKGFMIQTGDP-TGTGM   82 (176)
T ss_dssp             CSCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCT-TSSSS
T ss_pred             CCCCCCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHh-----------hcCccCCCEEEEEECCcEEEccCC-CCCCC
Confidence            466677777888899999999999999999999999999           567899999999999999999997 57889


Q ss_pred             CCCccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCC-CCC
Q psy17824         84 GGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVD-KMS  161 (272)
Q Consensus        84 gg~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d-~~~  161 (272)
                      ++.++||..|++|.+ .+.|+++|+|+||+.++++++|||||++.++||||+.|+|||+|++||+||++|+.++++ .++
T Consensus        83 gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  162 (176)
T 2a2n_A           83 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTD  162 (176)
T ss_dssp             CCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTC
T ss_pred             CCCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCC
Confidence            999999999999988 699999999999999999999999999999999999999999999999999999999998 689


Q ss_pred             CCccCeEEeEeee
Q psy17824        162 RPLQDVRVVKCNE  174 (272)
Q Consensus       162 ~P~~~i~I~~cg~  174 (272)
                      +|..+|+|.+|.+
T Consensus       163 ~P~~~v~I~~v~v  175 (176)
T 2a2n_A          163 KPYEDVSIINITV  175 (176)
T ss_dssp             CBSSCCBEEEEEE
T ss_pred             ccCCCeEEEEEEE
Confidence            9999999999975

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3e-48  Score=336.23  Aligned_cols=160  Identities=43%  Similarity=0.719  Sum_probs=149.7

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .++.|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+ .+++.
T Consensus        10 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~-----------~~g~Ydg~~FhRVi~~F~iQgGd~-~~~g~   72 (203)
T 2k7n_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA-----------RRGYYNGTKFHRIIKDFMIQGGDP-TGTGR   72 (203)
T ss_dssp             CCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHH-----------HHTCGGGCEEEEEETTTEEEEECS-SSSSS
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHH-----------hcCccCCCEEEEEeCCcEEEcCCC-CCCCC
Confidence            46778887     89999999999999999999999999           568999999999999999999997 47888


Q ss_pred             CCCccCCCCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         84 GGESIYGGTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        84 gg~s~~g~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      ++.++|+..|++|. +.++|..+|+|+|||.++++++|||||++.++||||++|+|||+|++||+||++|+.++++.+++
T Consensus        73 gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~  152 (203)
T 2k7n_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (203)
T ss_dssp             CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTE
T ss_pred             CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 58999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             CccCeEEeEeeeeccccc
Q psy17824        163 PLQDVRVVKCNELVLKSK  180 (272)
Q Consensus       163 P~~~i~I~~cg~l~~~~~  180 (272)
                      |..+|+|.+|+++.....
T Consensus       153 P~~~V~I~~~~v~~~~~s  170 (203)
T 2k7n_A          153 PVDDVKIIKAYPSGGGGS  170 (203)
T ss_dssp             ECCCCBEEEEEECCCCCC
T ss_pred             cCCCeEEEEEEEEecCCC
Confidence            999999999999965443

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=9.3e-48  Score=329.36  Aligned_cols=159  Identities=38%  Similarity=0.673  Sum_probs=148.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+++|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+ .++|.
T Consensus        23 ~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~-~~~g~   85 (185)
T 2hq6_A           23 TNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDP-TGTGS   85 (185)
T ss_dssp             CBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH-----------HTTTTTTEECCEEETTTEEEECCT-TSSSS
T ss_pred             CCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHh-----------hcCccCCCEEEEEECCCEEEcCCC-CCCCC
Confidence            46778887     78999999999999999999999999           467899999999999999999997 57889


Q ss_pred             CCCccCCCCCCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHH--HHHhcCCCCCC
Q psy17824         84 GGESIYGGTFEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVV--SHIENLPVDKM  160 (272)
Q Consensus        84 gg~s~~g~~~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl--~~I~~~~~d~~  160 (272)
                      |+.++||.+|++|.. .+.|+.+|+|+||+.++++++|||||++.++|+||++|+|||+|+ ||+|+  ++|+.++++.+
T Consensus        86 gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~  164 (185)
T 2hq6_A           86 GGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDD  164 (185)
T ss_dssp             CCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTT
T ss_pred             CCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCC
Confidence            999999999999986 689999999999999999999999999999999999999999999 88774  68999999999


Q ss_pred             CCCccCeEEeEeeeeccccc
Q psy17824        161 SRPLQDVRVVKCNELVLKSK  180 (272)
Q Consensus       161 ~~P~~~i~I~~cg~l~~~~~  180 (272)
                      ++|..+|+|.+|++|.++++
T Consensus       165 ~~P~~~v~I~~~~v~~~Pf~  184 (185)
T 2hq6_A          165 ERPHNPHKIKSCEVLFNPFD  184 (185)
T ss_dssp             SCBSSCCEEEEEEEEECTTC
T ss_pred             CCCCCCeEEEEEEEeCCCCC
Confidence            99999999999999998875

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.3e-47  Score=336.22  Aligned_cols=162  Identities=35%  Similarity=0.597  Sum_probs=147.8

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .++.|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+. ++|+
T Consensus        20 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~-----------~~g~Ydgt~FhRVi~~FmiQgGdp~-~~G~   82 (232)
T 3bkp_A           20 TRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPT-GTGR   82 (232)
T ss_dssp             CBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH-----------HHTTTTTCBEEEEETTTEEEECCTT-SSSS
T ss_pred             CCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHh-----------hcCccCCCEEEEEeCCCEEEcCCCC-CCCC
Confidence            35677776     89999999999999999999999999           4679999999999999999999974 8899


Q ss_pred             CCCccC--CCCCCCCCc-CcCCCcceeEeeeccCC--------------CCCccEEEEEcCCCCCCCCCCcEEEEEecCH
Q psy17824         84 GGESIY--GGTFEDENF-ELKHDEPFLLSMANRGK--------------DTNGSQFFITTQPAPHLDGVHVVFGHVVSGQ  146 (272)
Q Consensus        84 gg~s~~--g~~~~de~~-~~~h~~~G~lsm~~~g~--------------~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~  146 (272)
                      |+.++|  |..|++|.. .+.|+.+|+|+||+.++              ++++|||||||.++||||+.|+|||+|+ ||
T Consensus        83 Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~  161 (232)
T 3bkp_A           83 GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GH  161 (232)
T ss_dssp             CCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GG
T ss_pred             CCCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eC
Confidence            999999  889999986 78999999999999987              6999999999999999999999999999 77


Q ss_pred             HH--HHHHhcCCCCCCCCCccCeEEeEeeeecccccchh
Q psy17824        147 NV--VSHIENLPVDKMSRPLQDVRVVKCNELVLKSKLKA  183 (272)
Q Consensus       147 dV--l~~I~~~~~d~~~~P~~~i~I~~cg~l~~~~~~~~  183 (272)
                      +|  |++|+.++++.+++|..+|+|.+|++|.++++...
T Consensus       162 ~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~~  200 (232)
T 3bkp_A          162 TLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLV  200 (232)
T ss_dssp             GHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTCC
T ss_pred             chHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhhh
Confidence            65  89999999998999999999999999999987654

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.6e-46  Score=316.93  Aligned_cols=154  Identities=29%  Similarity=0.433  Sum_probs=138.9

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..+|+|+|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+....+
T Consensus         2 ~~~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~   65 (166)
T 1v9t_A            2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV-----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ   65 (166)
T ss_dssp             CCSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBEEEEETTTEEEESSBCTTCC
T ss_pred             CCCeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHh-----------ccCCCCCCEEEEEECCcEEEcCCcCcCCC
Confidence            468999998     89999999999999999999999999           56799999999999999999999854432


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeecc-CCCCCccEEEEEcCCCCCCCCC-----CcEEEEEecCHHHHHHHhcCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANR-GKDTNGSQFFITTQPAPHLDGV-----HVVFGHVVSGQNVVSHIENLP  156 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~-g~~s~~SqFfItl~~~p~ld~~-----~~VFG~Vi~G~dVl~~I~~~~  156 (272)
                         ...++.+|++|.....|+.+|+||||+. +|++++||||||+.++||||+.     |+|||+|++||+||++|+.++
T Consensus        66 ---~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~  142 (166)
T 1v9t_A           66 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP  142 (166)
T ss_dssp             ---BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSC
T ss_pred             ---CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCC
Confidence               2345778999987666677999999997 6999999999999999999998     999999999999999999999


Q ss_pred             CCC----CCCCccCeEEeEeeee
Q psy17824        157 VDK----MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       157 ~d~----~~~P~~~i~I~~cg~l  175 (272)
                      ++.    +++|..+|+|.+|.++
T Consensus       143 ~~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          143 THDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEEETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCCccCCCcCCCeEEEEEEEe
Confidence            976    4799999999999986

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=3e-46  Score=314.74  Aligned_cols=147  Identities=30%  Similarity=0.462  Sum_probs=133.4

Q ss_pred             ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCC
Q psy17824         14 ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTF   93 (272)
Q Consensus        14 v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~   93 (272)
                      +..|++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+|+|||||||+..+.   +.+++|.+|
T Consensus         3 ~l~T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~   68 (164)
T 1lop_A            3 TFHTNHGDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPI   68 (164)
T ss_dssp             EEEETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEECCEEETTTEEEESSEETTT---EECCCCCCB
T ss_pred             EEEeCCCCEEEEEeCCCCcHHHHHHHHHH-----------hcCCCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcc
Confidence            34599999999999999999999999999           5679999999999999999999986443   456788999


Q ss_pred             CCCCcC-cCCCcceeEeeec-cCCCCCccEEEEEcCCCCCCCCC--------CcEEEEEecCHHHHHHHhcCCCCC----
Q psy17824         94 EDENFE-LKHDEPFLLSMAN-RGKDTNGSQFFITTQPAPHLDGV--------HVVFGHVVSGQNVVSHIENLPVDK----  159 (272)
Q Consensus        94 ~de~~~-~~h~~~G~lsm~~-~g~~s~~SqFfItl~~~p~ld~~--------~~VFG~Vi~G~dVl~~I~~~~~d~----  159 (272)
                      ++|... +.| .+|+||||+ .++++++|||||++.++||||+.        |+|||+|++||+||++|+.++++.    
T Consensus        69 ~dE~~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~  147 (164)
T 1lop_A           69 KNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMH  147 (164)
T ss_dssp             CCCCCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTE
T ss_pred             cccccccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCcccc
Confidence            999875 555 699999997 57999999999999999999997        999999999999999999999975    


Q ss_pred             CCCCccCeEEeEeeee
Q psy17824        160 MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       160 ~~~P~~~i~I~~cg~l  175 (272)
                      +++|..+|+|.+|+++
T Consensus       148 ~~~P~~~v~I~~~~v~  163 (164)
T 1lop_A          148 QDVPKEDVIIESVTVS  163 (164)
T ss_dssp             EEEESSCCEEEEEEEC
T ss_pred             CCCcCCCeEEEEEEEe
Confidence            5899999999999987

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1.5e-45  Score=311.40  Aligned_cols=152  Identities=30%  Similarity=0.448  Sum_probs=135.5

Q ss_pred             CCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCC
Q psy17824          5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTG   84 (272)
Q Consensus         5 ~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~g   84 (272)
                      +|.|.|+     |++|+|+|+||++.||+||+||+.||           +.+||+|+.||||+++|||||||+..+.   
T Consensus         3 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~-----------~~g~Y~g~~FhRvi~~f~iQgGd~~~~~---   63 (167)
T 3s6m_A            3 GSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYV-----------KKGHYDGTIFHRVINGFMIQGGGFEPGL---   63 (167)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH-----------HHTTTTTEECCEEETTTEEEESSEETTT---
T ss_pred             CcEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHh-----------hhcccCCCEeEEecCCcEEEeccccCCC---
Confidence            5777776     99999999999999999999999999           5689999999999999999999986443   


Q ss_pred             CCccCCCCCCCCCcCcCCCcceeEeeec-cCCCCCccEEEEEcCCCCCCCCC--------CcEEEEEecCHHHHHHHhcC
Q psy17824         85 GESIYGGTFEDENFELKHDEPFLLSMAN-RGKDTNGSQFFITTQPAPHLDGV--------HVVFGHVVSGQNVVSHIENL  155 (272)
Q Consensus        85 g~s~~g~~~~de~~~~~h~~~G~lsm~~-~g~~s~~SqFfItl~~~p~ld~~--------~~VFG~Vi~G~dVl~~I~~~  155 (272)
                      +...++.+|++|.....++.+|+||||+ .++++++|||||++.+++|||+.        |+|||+|++||+||++|+++
T Consensus        64 ~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~  143 (167)
T 3s6m_A           64 KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAV  143 (167)
T ss_dssp             EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTS
T ss_pred             CCCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcC
Confidence            2345677888886544445799999999 67999999999999999999998        99999999999999999999


Q ss_pred             CCCC----CCCCccCeEEeEeeee
Q psy17824        156 PVDK----MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       156 ~~d~----~~~P~~~i~I~~cg~l  175 (272)
                      +++.    +++|..+|+|.+|.+|
T Consensus       144 ~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          144 KTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             CBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CcCCCcccCCCcCCCeEEEEEEEC
Confidence            9987    6899999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-38  Score=296.96  Aligned_cols=139  Identities=27%  Similarity=0.380  Sum_probs=120.4

Q ss_pred             CCCeEEEEEEECC---eeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCC
Q psy17824          4 IRPRCYFDVEISD---IPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVG   80 (272)
Q Consensus         4 ~~p~v~~di~v~~---t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~   80 (272)
                      .++.|.|++.+..   ++.|+|+|+||++.||+||+||+.||           +.+||+|+.|||| +||||||||+. +
T Consensus       169 gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~-----------~~GfYdGt~FHRV-~gFmIQgGDp~-g  235 (369)
T 3rfy_A          169 GRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV-----------ERHFYDGMEIQRS-DGFVVQTGDPE-G  235 (369)
T ss_dssp             SEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHH-----------HTTTTTTEECEEE-EEEEECCCCCC-C
T ss_pred             CCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHh-----------hcCCcCCCeeeee-CCeeEecCCCC-C
Confidence            3455556655432   46999999999999999999999999           5789999999999 99999999984 5


Q ss_pred             CCCC---------------------CCccCCCCCCCCCc-----CcCCCcceeEeeecc--CCCCCccEEEEEc------
Q psy17824         81 NGTG---------------------GESIYGGTFEDENF-----ELKHDEPFLLSMANR--GKDTNGSQFFITT------  126 (272)
Q Consensus        81 ~g~g---------------------g~s~~g~~~~de~~-----~~~h~~~G~lsm~~~--g~~s~~SqFfItl------  126 (272)
                      +|.|                     +.++|+..|+++++     .++|+.+|+|+||+.  ++|+++||||||+      
T Consensus       236 ~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~  315 (369)
T 3rfy_A          236 PAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELT  315 (369)
T ss_dssp             CCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEEC
T ss_pred             CCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccC
Confidence            5554                     45778888888764     788999999999998  8999999999999      


Q ss_pred             -CCCCCCCCCCcEEEEEecCHHHHHHHhcC
Q psy17824        127 -QPAPHLDGVHVVFGHVVSGQNVVSHIENL  155 (272)
Q Consensus       127 -~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~  155 (272)
                       .+.+|||++|+|||+|++||+||++|+..
T Consensus       316 ~~~~~~LDgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          316 PSNSNILDGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             SCCCSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred             CCCCcccCCCeeEEEEEecCHHHHHHHhCC
Confidence             47899999999999999999999999874

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=95.52  E-value=0.032  Score=45.57  Aligned_cols=106  Identities=15%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             EEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccC
Q psy17824         10 FDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIY   89 (272)
Q Consensus        10 ~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~   89 (272)
                      +.|.+++   ..++++|+.+.||.||+.|+++--       -+..-..|- ..++--+|-          .         
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------l~~~~~~~g-~E~y~~lp~----------~---------   81 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALP-------IKSTANRWG-DEIYFTTQV----------A---------   81 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------EEEEEEEET-TEEEECCSC----------C---------
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------cEEEHHhhC-CcEEEECCC----------C---------
Confidence            4455555   579999999999999999999871       000111221 111111110          0         


Q ss_pred             CCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCC------CCcEEEEEecCHHHHHHHh
Q psy17824         90 GGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDG------VHVVFGHVVSGQNVVSHIE  153 (272)
Q Consensus        90 g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~------~~~VFG~Vi~G~dVl~~I~  153 (272)
                       .... |+. ......|-|++-..+.     .|.|-.++.|...+      .-.+||+|++|++.|..|.
T Consensus        82 -l~~~-en~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           82 -VEKE-ENS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             -CCCS-SCC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             -CCCC-CCC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence             0010 111 1233577777755443     37777887753322      2478999999988776543

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=93.36  E-value=0.43  Score=39.83  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             EEEEEEECCeece-eEEEEEcCCCChhHHHHHHHHh
Q psy17824          8 CYFDVEISDIPLG-RIVFELYSDICPITCENFRALC   42 (272)
Q Consensus         8 v~~di~v~~t~~G-~IvIeL~~d~aP~t~~nF~~L~   42 (272)
                      .|+.|.+..  .| .++.+|..+.||.||+.|..+-
T Consensus        22 r~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~L   55 (188)
T 3kop_A           22 RYINITLEK--RGVTCKALLLDDVAPRTSKAVWDAL   55 (188)
T ss_dssp             CEEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHC
T ss_pred             eEEEEEEec--CCeEEEEEEccccChHHHHHHHHhC
Confidence            356665543  24 4889999999999999999976

>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A

Probab=85.31  E-value=3.1  Score=33.04  Aligned_cols=97  Identities=16%  Similarity=0.089  Sum_probs=55.6

Q ss_pred             eeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCCCCcC
Q psy17824         20 GRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFE   99 (272)
Q Consensus        20 G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~de~~~   99 (272)
                      ..++++|+..  |.|+..|.++--       -++....| |..+|-..|-.+ ..                    +++..
T Consensus        22 ~~v~a~L~Dn--p~Ta~~~~~~LP-------l~~~~~~~-g~E~y~~~p~~l-~~--------------------~e~~~   70 (136)
T 1zx8_A           22 GKCVIDLNEE--YEVVKLLKEKIP-------FESVVNTW-GEEIYFSTPVNV-QK--------------------MENPR   70 (136)
T ss_dssp             CEEEEEEETT--SHHHHHHHHHCS-------EEEECEES-SSEEEEECSCCC-CC--------------------CSSEE
T ss_pred             cEEEEEEcCC--HHHHHHHHHHCC-------cEEEHHHh-CCcEEEECCccC-CC--------------------CCCCC
Confidence            4689999754  889999999871       11122334 234433333211 00                    01111


Q ss_pred             cCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCC------CCcEEEEEecCHHHHHHHh
Q psy17824        100 LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDG------VHVVFGHVVSGQNVVSHIE  153 (272)
Q Consensus       100 ~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~------~~~VFG~Vi~G~dVl~~I~  153 (272)
                       .-...|-|+.-..+.+     |.|-.++.|...+      .-++||+|.+|++.|..+.
T Consensus        71 -~~~~~GDIaYw~pgg~-----LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v~  124 (136)
T 1zx8_A           71 -EVVEIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIK  124 (136)
T ss_dssp             -SSBCTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred             -ccCCCCcEEEeCCCCE-----EEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhCC
Confidence             1124677776555443     7787887764432      3589999999987775543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	4e-62
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	7e-56
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	4e-55
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	6e-54
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	5e-53
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	6e-51
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-48
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-48
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	5e-48
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-46
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-46
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	2e-44
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	3e-44
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	4e-44
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	9e-40
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-38
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-38
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	8e-33
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	1e-31
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	1e-30
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-26
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-23

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  191 bits (486), Expect = 4e-62
 Identities = 108/172 (62%), Positives = 127/172 (73%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           R R + DV I     GRIV ELY+DI P TC NF  LCTG  G GK +GK LHY    FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           RV+K FMIQ GDF+ G+GTGGESIYGG F+DE F +KHDEPF++SMAN+G +TNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELV 176
           TT PAPHL+ +HVVFG VVSGQ VV+ IE L  +  +RPL DV ++ C ELV
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 174

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  175 bits (444), Expect = 7e-56
 Identities = 96/171 (56%), Positives = 116/171 (67%), Gaps = 3/171 (1%)

Query: 5   RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFH 64
           R + +FD+ I +   GRI+FEL+SDI P TCENFRALCTGEK   +  GKNLHY N +FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSR--GKNLHYKNSIFH 60

Query: 65  RVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFI 124
           R++  FM Q GD + GNG+GGESIYG +F DENF +KHD+P LLSMAN G +TN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 125 TTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T  P P LDG HVVFG V+ G NVV  +E           + V +  C EL
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCGEL 170

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  174 bits (441), Expect = 4e-55
 Identities = 105/170 (61%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           PR +FDV+I    +GRIV EL++DI P T ENFRALCTGEKGIG TTGK LH+    FHR
Sbjct: 15  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 74

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++K FMIQ GDFS  NGTGGESIYG  FEDENF  KHD+  LLSMAN G +TNGSQFFIT
Sbjct: 75  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFIT 134

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T P PHLDG HVVFG V+ G  V   +EN+ V    +P +   + +C EL
Sbjct: 135 TVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVIAECGEL 183

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  170 bits (431), Expect = 6e-54
 Identities = 87/167 (52%), Positives = 105/167 (62%), Gaps = 9/167 (5%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
              +FD+  +  PLG I F+L+ D+ P T  NFRALCTGEKG G             FHR
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYA--------GSHFHR 53

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM+Q GDF+ GNGTGG+SIYG  F DENF+LKH++P LLSMAN G +TNGSQFFIT
Sbjct: 54  VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           T     LDG HVVFG V+ G NVV  IE        +P   + + KC
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKC 159

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  168 bits (426), Expect = 5e-53
 Identities = 92/173 (53%), Positives = 115/173 (66%), Gaps = 2/173 (1%)

Query: 3   LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIV 62
           + R + +FD+ I     GRIV ELY D+ P T  NFRALCTGE GIGK+ GK LH+    
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 63  FHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQF 122
           FHR++  FMIQ GDF+ GNGTGGESIYG  F DENF+ KH  P +LSMAN G +TNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 123 FITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           F+ T     LDG HVVFG VV G +VV  +E+    +  +P++D  +  C +L
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG-SQSGKPVKDCMIADCGQL 171

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (411), Expect = 6e-51
 Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 9/170 (5%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P  Y DV+ +  PLGR+V EL +D+ P T ENFRALCTGEKG          Y    FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHR 54

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+  FM Q+GDF+  NGTGG+SIYG  F DENF LKH  P +LSMAN G +TNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           T     LDG HVVFGHV+ G +VV  IE+    K  R  + + +  C +L
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQL 163

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  156 bits (396), Expect = 1e-48
 Identities = 83/170 (48%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P  +FDV I    +GR+  EL++D+ P T ENFR  CTGE    +  G  + Y    FHR
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKGSTFHR 63

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+K FMIQ GDF  G+GTG  SIY G F DENF+L+H  P LLSMAN G  TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
                 LDG HVVFG ++ G  V+  IEN+P    ++P   V + +C E+
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  156 bits (394), Expect = 2e-48
 Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 9/175 (5%)

Query: 1   MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
           M ++  + YFD+ I D P+GR+V  L+ +  P T ENF+ L +GE G G        Y  
Sbjct: 1   MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKG 52

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
            +FHRV++ FMIQ GDF+  +GTGG+SIYG  F+DEN +        +SMAN G ++NGS
Sbjct: 53  SIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGS 111

Query: 121 QFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNEL 175
           QFF+TT P P LDG HVVFG VV G +VV  +EN       +P + V++  C  L
Sbjct: 112 QFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  155 bits (393), Expect = 5e-48
 Identities = 89/175 (50%), Positives = 107/175 (61%), Gaps = 8/175 (4%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +  + +FDV I D  +GRIV  L+ ++ P T ENF AL TGEKG G        Y   +F
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIF 57

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+K FMIQ GDF+  +GTGG SIYG TF DENF+LKH     +SMAN G DTNGSQFF
Sbjct: 58  HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVLK 178
           IT      LDG HVVFG V+ G  VV  IE    D   RPL D  +V   ++ +K
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  151 bits (382), Expect = 1e-46
 Identities = 82/178 (46%), Positives = 98/178 (55%), Gaps = 16/178 (8%)

Query: 6   PRCYFDVEISDI-----PLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLN 60
            + +FDVE + +      +GRIVF L+    P T +NFR LC    G          Y  
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRE 53

Query: 61  IVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGS 120
             FHR++  FMIQ GDF+ GNGTGG SIYG  F DENF  KHD+  +LSMAN G +TNGS
Sbjct: 54  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGS 113

Query: 121 QFFITTQPAPHLDGVHVVFGHVV--SGQNVVSHIENLPVD-KMSRPLQDVRVVKCNEL 175
           QFFITT     LDG HVVFG V      +VV  IE L       R     ++V C EL
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  151 bits (381), Expect = 4e-46
 Identities = 85/174 (48%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 4   IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVF 63
           +  R YFD+EI   P+GRIV  L+    P T  NF  L    KG G        Y    F
Sbjct: 5   VTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKF 56

Query: 64  HRVVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFF 123
           HRV+  FMIQ GDF+ G+GTGG SIYG  F DENF+LKH     LSMAN G DTNGSQFF
Sbjct: 57  HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116

Query: 124 ITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNELVL 177
           ITT   P LDG HVVFG ++ G +VV  IE        RP QDV +     + +
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 2e-44
 Identities = 66/157 (42%), Positives = 88/157 (56%), Gaps = 13/157 (8%)

Query: 16  DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSG 75
           +  +G IV ELY    P TC+NF  L               +Y    FHR++K FMIQ G
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGG 65

Query: 76  DFSVGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDG 134
           D + G G GG SIYG  FEDE + +LK     +L+MAN G DTNGSQFF+T  P   LDG
Sbjct: 66  DPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDG 124

Query: 135 VHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK 171
            H +FG V  G  +V+ +  +  +   RP+ DV+++K
Sbjct: 125 KHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  146 bits (368), Expect = 3e-44
 Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 6/173 (3%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P  + D+ + +  LG+  FEL+ +I P T ENFR  CTGE  +       + Y N +FHR
Sbjct: 17  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFHR 73

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           V+K FMIQ GDF   NG+G  SIYG  F+DENF++KHD+  LLSMAN G +TNG QFFIT
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 133

Query: 126 TQPAPHLDGVHVVFGHVVSGQ--NVVSHIENLPVD-KMSRPLQDVRVVKCNEL 175
           T+    LDG +VVFG ++      ++  IEN+ V   + +P   + VV+C EL
Sbjct: 134 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (365), Expect = 4e-44
 Identities = 82/169 (48%), Positives = 100/169 (59%), Gaps = 9/169 (5%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P+ Y D++I + P GRI   L SD+ P+T ENFR LCT          K   +    FHR
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCT--------HEKGFGFKGSSFHR 53

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++  FM Q GDF+  NGTGG+SIYG  F+DENF LKH  P LLSMAN G +TNGSQFF+T
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCNE 174
                 LDG HVVFG V  G +V+  IE     K  +P Q V +  C E
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADCGE 161

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 9e-40
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 21/182 (11%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G +  EL+ D+ P TCENF  LC              +Y   +FHR ++ F+IQ GD +
Sbjct: 9   KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 57

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G GTGGES +G  F+DE    L H    +LSMAN G ++N SQFFIT +   +LD  H 
Sbjct: 58  -GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 116

Query: 138 VFGHVVSGQNVVSHIENLPVDKMS-RPLQDVRVVKC-------NELVLKSKLKAKEKRKA 189
           +FG VV G +V++ +EN+  D  + RP +++R+           E   +   + K + K 
Sbjct: 117 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQIAQERKTQLKV 176

Query: 190 SP 191
           +P
Sbjct: 177 AP 178

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 2e-38
 Identities = 69/156 (44%), Positives = 92/156 (58%), Gaps = 14/156 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I  E++ +  P TCENF ALC            + +Y   +FHR +KGFM+Q+GD +
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC-----------ASNYYNGCIFHRNIKGFMVQTGDPT 57

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
              G GG SI+G  FEDE +  LKH+   ++SMAN G +TNGSQFFIT    PHLD  + 
Sbjct: 58  G-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116

Query: 138 VFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC 172
           VFG V+ G   +  +E LPV+ K  RPL DV +   
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  130 bits (328), Expect = 2e-38
 Identities = 60/160 (37%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKN----LHYLNIVFHRVVKGFMIQS 74
            G I   L+ +  P T  NF  L  G K               Y   VFHRV++GFMIQ 
Sbjct: 12  RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ- 70

Query: 75  GDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDG 134
           G    G G GG        ++ + EL+ D+P+LL+MAN G  TNGSQFFIT    PHL+ 
Sbjct: 71  GGDPTGTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 128

Query: 135 VHVVFGHVVS--GQNVVSHIENLPVDKMSRPLQDVRVVKC 172
            H +FG V+    Q VV  I     D   RP   V +   
Sbjct: 129 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  115 bits (289), Expect = 8e-33
 Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 13/155 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           +G I   L+   C  T +NF                  +Y N +FHRV+K FM+Q+GD S
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS 58

Query: 79  VGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G+GTGGESI+G  FEDE F+ L H +PF++SMAN G +TNGSQFFITT P P LD  H 
Sbjct: 59  -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 117

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           VFG V  G  +V  IE +  DK  +PL+D++++  
Sbjct: 118 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 1e-31
 Identities = 65/168 (38%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 6   PRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHR 65
           P+   D  I    +G I  +L+   CP T ENF               +N +Y    FHR
Sbjct: 5   PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-----------RNGYYNGHTFHR 53

Query: 66  VVKGFMIQSGDFSVGNGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFIT 125
           ++KGFMIQ+GD +     G     G   ++ +  L+HD P+ LSMAN G +TNGSQFFIT
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 126 TQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC 172
             P P LD  H VFG V  G  VV  I N+ V+ K  +P +DV ++  
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  110 bits (276), Expect = 1e-30
 Identities = 56/155 (36%), Positives = 76/155 (49%), Gaps = 13/155 (8%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
           LG    ELY    P TC NF  LC               + +      V    +  G   
Sbjct: 25  LGDFEVELYWYHSPKTCLNFYTLCEM------------GFYDNTIFHRVIPNFVIQGGDP 72

Query: 79  VGNGTGGESIYGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHV 137
            G G GG+SIYG  FEDE N ELKH    +LSM+N G +TN SQFFIT  P PHLDG H 
Sbjct: 73  TGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 132

Query: 138 VFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKC 172
           +F  V      + +I ++     ++P+ D+++++ 
Sbjct: 133 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 167

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 98.0 bits (243), Expect = 7e-26
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 19  LGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFS 78
            G IV + + D  P T +NF   C           +   Y N +FHRV+ GFMIQ G F 
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFE 56

Query: 79  VGNGTGGESIYGGTFEDENFELKHDEPFLLSMANR-GKDTNGSQFFITTQP--------A 129
            G             ++E      +    L+MA      +  +QFFI             
Sbjct: 57  PGMKQK---ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113

Query: 130 PHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVKC 172
                 + VF  VV G + V  I+ +   +       P +DV +   
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (228), Expect = 1e-23
 Identities = 43/170 (25%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 16  DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSG 75
               G I  EL     P++ +NF                   Y N  FHRV+ GFMIQ G
Sbjct: 10  TTSAGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGG 58

Query: 76  DFSVGNGTGGESIYGGTFEDENFE-LKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLD- 133
            F        +       ++E    L++    +       KD+  SQFFI       LD 
Sbjct: 59  GF---TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDH 115

Query: 134 ----GVHVVFGHVVSGQNVVSHIENLPVDKMS----RPLQDVRVVKCNEL 175
                 + VFG VV G +V   I  +P   +      P + V ++    L
Sbjct: 116 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1zx8a1	124	Hypothetical protein TM1367 {Thermotoga maritima [	88.91

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=1e-50  Score=342.38  Aligned_cols=174  Identities=62%  Similarity=1.062  Sum_probs=166.7

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      +.|++|||||+|+++++|+|+|+||.+.||+||+||+.||++..+.++..++.++|+|+.||||+++++||+|++..+++
T Consensus         1 ~~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~   80 (174)
T d1a33a_           1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   80 (174)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCC
Confidence            46899999999999999999999999999999999999999998888888899999999999999999999999988888


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      .++.+.++..+.++...++|+.+|+|+|++.++++++|||||+|+++|+||+.|+|||+|++|||||++|+.++++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~  160 (174)
T d1a33a_          81 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  160 (174)
T ss_dssp             SCCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCC
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEeEeeeec
Q psy17824        163 PLQDVRVVKCNELV  176 (272)
Q Consensus       163 P~~~i~I~~cg~l~  176 (272)
                      |..+|+|++||+|+
T Consensus       161 P~~~i~I~~cGel~  174 (174)
T d1a33a_         161 PLADVVILNCGELV  174 (174)
T ss_dssp             BSSCEEEEEEEECC
T ss_pred             CCCCEEEEeeEEEC
Confidence            99999999999985

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=3.6e-50  Score=338.73  Aligned_cols=171  Identities=54%  Similarity=0.927  Sum_probs=161.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||+|+++++|+|+|+||.+.||.||+||++||+|..+... +++.++|+++.||||+++++||+|++..+++.
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~-~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccc-cCcccccCCcceeEEEecceEEcCCccCCCCC
Confidence            58999999999999999999999999999999999999998776543 44789999999999999999999999888999


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++..+++..+++|...+.|+.+|+|+|++.++++++|||||||.++|+||+.|+|||+|++|||||++|+..++ .+++|
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~P  159 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKP  159 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999886 57999


Q ss_pred             ccCeEEeEeeeec
Q psy17824        164 LQDVRVVKCNELV  176 (272)
Q Consensus       164 ~~~i~I~~cg~l~  176 (272)
                      +.+|+|++||+|.
T Consensus       160 ~~~i~I~~cG~l~  172 (172)
T d2igva1         160 VKDCMIADCGQLK  172 (172)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCeEEEeccccC
Confidence            9999999999983

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.8e-49  Score=333.71  Aligned_cols=169  Identities=57%  Similarity=0.956  Sum_probs=157.9

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||+|++|++|+|+|+||++.||+||+||+.||++.....  ..+.++|+|+.||||+++++||+|++..+++.
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~--~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~   79 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS--RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECT--TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccc--cCccCccCcccceEEEeCceEEecCccCCCCC
Confidence            5899999999999999999999999999999999999998754321  23678999999999999999999999888888


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++...++..++++.+.+.|+.+|+|+|++.++++++|||||+|+++|+||+.|+|||+|++|||||++|++.+++ +++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P  158 (170)
T d1qnga_          80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCC
T ss_pred             CCcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCC
Confidence            888899999999999999999999999999999999999999999999999999999999999999999999874 6899


Q ss_pred             ccCeEEeEeeee
Q psy17824        164 LQDVRVVKCNEL  175 (272)
Q Consensus       164 ~~~i~I~~cg~l  175 (272)
                      ..+|+|++||+|
T Consensus       159 ~~~i~I~~CG~l  170 (170)
T d1qnga_         159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             ccCEEEEeeEcC
Confidence            999999999987

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-49  Score=328.64  Aligned_cols=161  Identities=52%  Similarity=0.865  Sum_probs=151.8

Q ss_pred             CCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCC
Q psy17824          5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTG   84 (272)
Q Consensus         5 ~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~g   84 (272)
                      ||+|||||.|+++++|+|+|+||.+.||+||+||++||++.        +.++|+|+.||||+|+|+||+|++....+.+
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~--------~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~   72 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--------KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG   72 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTT--------TSCCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhc--------cccccCCcEEEEEEEeeeEEeeeccCCCCCC
Confidence            79999999999999999999999999999999999999754        3468999999999999999999998778888


Q ss_pred             CCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCc
Q psy17824         85 GESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPL  164 (272)
Q Consensus        85 g~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~  164 (272)
                      +.+.++..+.++.+.+.|+.+|+|+|++.++++++|||||+|.++|+||+.|+|||+|++|||||++|+..++ .+++|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~-~~~~P~  151 (161)
T d2r99a1          73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPK  151 (161)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             CccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCC-CCCcCC
Confidence            8888888888899999999999999999999999999999999999999999999999999999999998765 689999


Q ss_pred             cCeEEeEeee
Q psy17824        165 QDVRVVKCNE  174 (272)
Q Consensus       165 ~~i~I~~cg~  174 (272)
                      .+|+|++||+
T Consensus       152 ~~i~I~~CGe  161 (161)
T d2r99a1         152 QKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEeCCC
Confidence            9999999996

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-49  Score=336.53  Aligned_cols=178  Identities=59%  Similarity=0.959  Sum_probs=167.1

Q ss_pred             CCCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCC
Q psy17824          2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         2 ~~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      -..||+|||||+|+++++|+|+|+||.+.||+||+||+.||++..+.+...++.++|+|+.||||+++++||+|++....
T Consensus        11 ~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~   90 (195)
T d1ihga2          11 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQN   90 (195)
T ss_dssp             CTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCC
Confidence            35799999999999999999999999999999999999999988887777778999999999999999999999988778


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~  161 (272)
                      +.++...++..|.++...+.|+.+|+|+|++.++++++|||||||+++|+||+.|+|||+|++||+||++|++++++ ++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~-~~  169 (195)
T d1ihga2          91 GTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-GE  169 (195)
T ss_dssp             SSCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEE-TT
T ss_pred             CCCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCC-CC
Confidence            88888888989999999999999999999999999999999999999999999999999999999999999999985 78


Q ss_pred             CCccCeEEeEeeeeccccc
Q psy17824        162 RPLQDVRVVKCNELVLKSK  180 (272)
Q Consensus       162 ~P~~~i~I~~cg~l~~~~~  180 (272)
                      +|..+|+|++||+|....+
T Consensus       170 ~P~~~i~I~~cG~l~~~~~  188 (195)
T d1ihga2         170 KPAKLCVIAECGELKEGDD  188 (195)
T ss_dssp             EESSCEEEEEEEEECTTCC
T ss_pred             CcCCCeEEEECcccCCCCc
Confidence            9999999999999976544

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=327.00  Aligned_cols=163  Identities=54%  Similarity=0.895  Sum_probs=154.0

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .||+|||||.|+++++|+|+|+||.+.||.||+||+.||++.        +..+|+|+.||||+++++||+|++...++.
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~--------~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~   72 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--------KGFGYKGSTFHRVIPSFMCQAGDFTNHNGT   72 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTT--------TSCCSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcC--------CCcccCCcEEEEecccceEecCCccCCCCC
Confidence            489999999999999999999999999999999999999653        345799999999999999999999888888


Q ss_pred             CCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCC
Q psy17824         84 GGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRP  163 (272)
Q Consensus        84 gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P  163 (272)
                      ++...++..++++.+.+.|+.+|+|+|++.++++++|||||++.++|+||+.|+|||+|++||+||++|+++++ .+++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~-~~~~P  151 (164)
T d2z6wa1          73 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRT  151 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCC
T ss_pred             CCccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCC-CCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999997 47899


Q ss_pred             ccCeEEeEeeee
Q psy17824        164 LQDVRVVKCNEL  175 (272)
Q Consensus       164 ~~~i~I~~cg~l  175 (272)
                      ..+|+|.+||+|
T Consensus       152 ~~~i~I~~cG~l  163 (164)
T d2z6wa1         152 SKKIVITDCGQL  163 (164)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeCeec
Confidence            999999999998

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=2.2e-48  Score=327.63  Aligned_cols=171  Identities=49%  Similarity=0.841  Sum_probs=154.4

Q ss_pred             CCCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCC
Q psy17824          2 KLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGN   81 (272)
Q Consensus         2 ~~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~   81 (272)
                      ...||+|||||+|.++++|+|+|+||.+.||+||+||+.||++....   .++...|+++.||||+++|++|+|++..+.
T Consensus         3 ~~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~---~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~   79 (173)
T d1qoia_           3 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGD   79 (173)
T ss_dssp             SCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccc---cCCCCCcCCcccceeccceeeccCCcccCC
Confidence            35799999999999999999999999999999999999999632100   012223999999999999999999987777


Q ss_pred             CCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC
Q psy17824         82 GTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS  161 (272)
Q Consensus        82 g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~  161 (272)
                      +......++.++.++.+...|+.+|+|+|++.++++++|||||+|++.|+||++|+|||+|++||+||++|+.++++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~  159 (173)
T d1qoia_          80 GTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNN  159 (173)
T ss_dssp             SCCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             cceeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCC
Confidence            77777777888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCeEEeEeeee
Q psy17824        162 RPLQDVRVVKCNEL  175 (272)
Q Consensus       162 ~P~~~i~I~~cg~l  175 (272)
                      +|..+|+|.+||+|
T Consensus       160 ~P~~~i~I~~cGel  173 (173)
T d1qoia_         160 KPKLPVVISQCGEM  173 (173)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCEEEEcccCC
Confidence            99999999999987

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.1e-48  Score=330.65  Aligned_cols=170  Identities=49%  Similarity=0.775  Sum_probs=160.4

Q ss_pred             CCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCC
Q psy17824          5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTG   84 (272)
Q Consensus         5 ~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~g   84 (272)
                      ..+|||||+|+++++|+|+|+||.+.||+||+||++||++.        +.++|+|+.||||+++|+||+|++..+++.+
T Consensus         6 t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g--------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g   77 (182)
T d1h0pa_           6 TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKP--------KGEGYPGSKFHRVIADFMIQGGDFTRGDGTG   77 (182)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSC--------TTTSSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhc--------ccCCcCCceEEEEEecceEEcCCCCCCCCCC
Confidence            45899999999999999999999999999999999999753        3458999999999999999999998889999


Q ss_pred             CCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCc
Q psy17824         85 GESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPL  164 (272)
Q Consensus        85 g~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~  164 (272)
                      +.+.++..+.++.+...|+.+|+|+|++.++++++|||||+|+++|+||+.|+|||+|++||+||++|+.++++.+++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~  157 (182)
T d1h0pa_          78 GRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPK  157 (182)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEES
T ss_pred             CCCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEeEeeeecccccch
Q psy17824        165 QDVRVVKCNELVLKSKLK  182 (272)
Q Consensus       165 ~~i~I~~cg~l~~~~~~~  182 (272)
                      .+|+|.+||+|....+.+
T Consensus       158 ~~v~I~~cG~l~~~~p~~  175 (182)
T d1h0pa_         158 QDVIIAASGHIAVDTPFS  175 (182)
T ss_dssp             SCEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEECCeEeCCCCCc
Confidence            999999999999776654

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=6.4e-48  Score=327.75  Aligned_cols=168  Identities=52%  Similarity=0.818  Sum_probs=158.0

Q ss_pred             CCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCC
Q psy17824          5 RPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTG   84 (272)
Q Consensus         5 ~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~g   84 (272)
                      +.+|||||+|+++++|+|+|+||.+.||++|+||+.||++.        +.++|+|+.||||+++++||+|++...++.+
T Consensus         7 t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~--------k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   78 (182)
T d2rmca_           7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE--------KGYGYKGSIFHRVIKDFMIQGGDFTARDGTG   78 (182)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTT--------TSCSSTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcC--------CCccccCceeeeeecCceEEcCCCCCCCCCC
Confidence            56899999999999999999999999999999999999764        3457999999999999999999988888888


Q ss_pred             CCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCc
Q psy17824         85 GESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPL  164 (272)
Q Consensus        85 g~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~  164 (272)
                      +.++++..++++++.+.|+.+|+|+|++.++++++|||||+++++++||+.|+|||+|++||+||++|+.++++.+++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~  158 (182)
T d2rmca_          79 GMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPL  158 (182)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEeEeeeeccccc
Q psy17824        165 QDVRVVKCNELVLKSK  180 (272)
Q Consensus       165 ~~i~I~~cg~l~~~~~  180 (272)
                      .+|+|++||+|....+
T Consensus       159 ~~v~I~~~g~l~~~~P  174 (182)
T d2rmca_         159 TDCTIVNSGKIDVKTP  174 (182)
T ss_dssp             SCEEEEEEEEEEEEEE
T ss_pred             CCeEEEEeeEEeCCCC
Confidence            9999999999974433

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.3e-47  Score=321.15  Aligned_cols=166  Identities=47%  Similarity=0.843  Sum_probs=151.1

Q ss_pred             CCCCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCC
Q psy17824          1 MKLIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVG   80 (272)
Q Consensus         1 ~~~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~   80 (272)
                      |=..+++|||||+++++++|+|+|+||.+.||.||+||+.||++..+        .+|+|+.|||++++++||+|++...
T Consensus         1 ~p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~--------~~Y~g~~f~rv~~~~~iq~G~~~~~   72 (166)
T d1xo7a_           1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENG--------FGYKGSIFHRVIRNFMIQGGDFTNF   72 (166)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTS
T ss_pred             CCCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccccc--------ccccCcEEEEEcCCCEEEeCCCCCC
Confidence            44678999999999999999999999999999999999999976433        2499999999999999999998888


Q ss_pred             CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCC
Q psy17824         81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKM  160 (272)
Q Consensus        81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~  160 (272)
                      ++.++...++..++++... .|+.+|+|+|++.++++++|||||+|+++|+||++|+|||+|++||+||++|+.++++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~-~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  151 (166)
T d1xo7a_          73 DGTGGKSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLN  151 (166)
T ss_dssp             SSSCCCBTTBSCBCCCCCC-SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGG
T ss_pred             CCCCCCCCCCccccccccc-ccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCC
Confidence            8888887777666666554 455789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCeEEeEeeee
Q psy17824        161 SRPLQDVRVVKCNEL  175 (272)
Q Consensus       161 ~~P~~~i~I~~cg~l  175 (272)
                      ++|..+|+|.+||+|
T Consensus       152 ~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         152 DKPKKAVKINDCGVL  166 (166)
T ss_dssp             GCBSSCEEEEEEEEC
T ss_pred             CCCCCCEEEEeeEeC
Confidence            999999999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.1e-47  Score=323.78  Aligned_cols=170  Identities=47%  Similarity=0.822  Sum_probs=157.1

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      ..||+|||||.|+++++|+|+|+||.+.||+||+||++||++..+.+   .....|+|+.||||+++++||+|++....+
T Consensus        14 ~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~---~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~   90 (186)
T d1z81a1          14 PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNG   90 (186)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccC---CcccccCCCeeeeeecceeeecCCccccCC
Confidence            46899999999999999999999999999999999999998765432   234569999999999999999999877777


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecC--HHHHHHHhcCCCCC-
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSG--QNVVSHIENLPVDK-  159 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G--~dVl~~I~~~~~d~-  159 (272)
                      .+...+++..+.++...+.|+.+|+|+|++.++++++|||||+|+++|+||++|+|||+|++|  ||||++|+.++++. 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~  170 (186)
T d1z81a1          91 SGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPY  170 (186)
T ss_dssp             CCCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTT
T ss_pred             cccccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCC
Confidence            788888899999999999999999999999999999999999999999999999999999998  99999999999975 


Q ss_pred             CCCCccCeEEeEeeee
Q psy17824        160 MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       160 ~~~P~~~i~I~~cg~l  175 (272)
                      +++|..+|+|++||+|
T Consensus       171 ~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         171 IYKPKIPINVVECGEL  186 (186)
T ss_dssp             TCCBSSCEEEEEEEEC
T ss_pred             CCccCCCEEEEeCCcC
Confidence            6899999999999986

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=5.2e-47  Score=316.52  Aligned_cols=159  Identities=55%  Similarity=0.946  Sum_probs=149.4

Q ss_pred             eEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCC
Q psy17824          7 RCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGE   86 (272)
Q Consensus         7 ~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~   86 (272)
                      .|||||+|+++++|+|+|+||.+.||.||+||+.||++..|        .+|+|+.||||+++++||+|++..+++.++.
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKG--------FGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccC--------CccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            68999999999999999999999999999999999975432        2599999999999999999999888888888


Q ss_pred             ccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccC
Q psy17824         87 SIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQD  166 (272)
Q Consensus        87 s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~  166 (272)
                      ++++..|.+|++.+.|+.+|+|+|++.++++++|||||++.+.|+||+.|+|||+|++|||||++|+..++ .+++|..+
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~-~~~~P~~~  153 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSR  153 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSC
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCC-CCCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999988765 68999999


Q ss_pred             eEEeEeee
Q psy17824        167 VRVVKCNE  174 (272)
Q Consensus       167 i~I~~cg~  174 (272)
                      |+|.+|||
T Consensus       154 i~I~~cgv  161 (162)
T d2cfea1         154 IEIAKCGV  161 (162)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeeEc
Confidence            99999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1.7e-45  Score=309.88  Aligned_cols=162  Identities=51%  Similarity=0.842  Sum_probs=120.9

Q ss_pred             CeEEEEEE-----ECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCC
Q psy17824          6 PRCYFDVE-----ISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVG   80 (272)
Q Consensus         6 p~v~~di~-----v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~   80 (272)
                      |+|||||.     +..|++|+|+|+||.+.||+||+||++||++..+        ..|+++.||||+++|+||+|++..+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~--------~~y~~~~f~ri~~~~~iq~G~~~~~   73 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG--------EGYRESTFHRIIPNFMIQGGDFTRG   73 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECC----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccc--------ccccCceeeEEEEEEeeEcCCccCC
Confidence            78999997     6778999999999999999999999999964322        3499999999999999999999888


Q ss_pred             CCCCCCccCCCCCCCCCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec--CHHHHHHHhcCCCC
Q psy17824         81 NGTGGESIYGGTFEDENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVD  158 (272)
Q Consensus        81 ~g~gg~s~~g~~~~de~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~--G~dVl~~I~~~~~d  158 (272)
                      ++.++...++..+.++...+.|+.+|+|+|++.++++++|||||++++.|+||+.|+|||+|++  ||+||++|++++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~  153 (171)
T d2c3ba1          74 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  153 (171)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCC
Confidence            8888888888888888899999999999999999999999999999999999999999999995  99999999999987


Q ss_pred             C-CCCCccCeEEeEeeee
Q psy17824        159 K-MSRPLQDVRVVKCNEL  175 (272)
Q Consensus       159 ~-~~~P~~~i~I~~cg~l  175 (272)
                      . +.+|..+|.|++||+|
T Consensus       154 ~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         154 SGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCcCCCCCEEEEeCccC
Confidence            6 4479999999999987

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-44  Score=298.93  Aligned_cols=153  Identities=45%  Similarity=0.731  Sum_probs=138.2

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|++|+|+|+||.+.||.||+||++||           +.++|+|+.||||+++|+|||||+. ..+.++...++..++
T Consensus         5 ~~T~~G~i~ieL~~~~aP~tv~nF~~L~-----------~~g~Y~~~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~   72 (159)
T d2ok3a1           5 LHTDVGDIKIEVFCERTPKTCENFLALC-----------ASNYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFE   72 (159)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBC
T ss_pred             EEeCCeEEEEEEcCCCChHHHHHHHHHH-----------hhhcccceeEecccCCeEEEeCCcc-ccCCCCcccCCCccc
Confidence            3599999999999999999999999999           5678999999999999999999974 334455666777777


Q ss_pred             CCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCC-CCCCccCeEEeEe
Q psy17824         95 DEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDK-MSRPLQDVRVVKC  172 (272)
Q Consensus        95 de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~-~~~P~~~i~I~~c  172 (272)
                      .+. ..++|+.+|+|+|++.++++++||||||+++.|+||+.|+|||+|++||+||++|++++++. +++|..+|+|.+|
T Consensus        73 ~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v  152 (159)
T d2ok3a1          73 DEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI  152 (159)
T ss_dssp             CCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEE
T ss_pred             cccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEE
Confidence            764 46899999999999999999999999999999999999999999999999999999999976 5789999999999


Q ss_pred             eeecccc
Q psy17824        173 NELVLKS  179 (272)
Q Consensus       173 g~l~~~~  179 (272)
                      .+|.+||
T Consensus       153 ~i~~~Pf  159 (159)
T d2ok3a1         153 TIHANPF  159 (159)
T ss_dssp             EEECCSC
T ss_pred             EEEeCCC
Confidence            9998775

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-44  Score=300.98  Aligned_cols=157  Identities=41%  Similarity=0.664  Sum_probs=145.0

Q ss_pred             CCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCC
Q psy17824         15 SDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFE   94 (272)
Q Consensus        15 ~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~   94 (272)
                      ..|++|+|+|+||.+.||+||+||+.||           +.++|+|+.||||+++|+||+|++ ..++.++.+.++.+|.
T Consensus         5 l~T~~G~i~IeL~~~~aP~tv~nF~~L~-----------~~~~Y~g~~f~rv~~~~~iq~Gd~-~~~~~~~~~~~~~~~~   72 (178)
T d1zkca1           5 LHTNKGDLNLELHCDLTPKTCENFIRLC-----------KKHYYDGTIFHRSIRNFVIQGGDP-TGTGTGGESYWGKPFK   72 (178)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEEEEEEETTTEEEECCT-TSSSSCCCBTTBSCBC
T ss_pred             EEeCCEEEEEEEcCCCChHHHHHHHHHH-----------hcCCcCceEeeeccceeEEecCCc-cCCCCCCcccCCCCcC
Confidence            4599999999999999999999999999           578999999999999999999996 4567788888888998


Q ss_pred             CCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCC-CCCCCccCeEEeEe
Q psy17824         95 DENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVD-KMSRPLQDVRVVKC  172 (272)
Q Consensus        95 de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d-~~~~P~~~i~I~~c  172 (272)
                      +|.. .++|+.+|+|+|++.++++++|||||+|+++|+||+.|+|||+|++||+||++|++++++ .+++|..+|+|.+|
T Consensus        73 ~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~  152 (178)
T d1zkca1          73 DEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT  152 (178)
T ss_dssp             CCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEE
T ss_pred             CccccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEE
Confidence            8854 689999999999999999999999999999999999999999999999999999999997 46899999999999


Q ss_pred             eeecccccchh
Q psy17824        173 NELVLKSKLKA  183 (272)
Q Consensus       173 g~l~~~~~~~~  183 (272)
                      .+|.++++...
T Consensus       153 ~Il~~pf~~~~  163 (178)
T d1zkca1         153 TVFVDPYEEAD  163 (178)
T ss_dssp             EEEECTTHHHH
T ss_pred             EEEcCCcchhh
Confidence            99999887543

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=297.33  Aligned_cols=152  Identities=45%  Similarity=0.784  Sum_probs=142.3

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      .+|+|+|+     |++|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++|+|||||+ .+.+.
T Consensus        10 ~~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~-----------~~g~Y~g~~f~rv~~~~~iq~Gd~-~~~~~   72 (166)
T d1xwna1          10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA-----------RRGYYNGTKFHRIIKDFMIQGGDP-TGTGR   72 (166)
T ss_dssp             CCCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHH-----------HHTSSTTCCEEEEETTTEEEECCS-TTTTS
T ss_pred             CCCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHH-----------hcCCcCceeeeEEcccEEEEeCCC-CCCCC
Confidence            57899998     88999999999999999999999999           678999999999999999999997 56777


Q ss_pred             CCCccCCCCCCCCC-cCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCC
Q psy17824         84 GGESIYGGTFEDEN-FELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSR  162 (272)
Q Consensus        84 gg~s~~g~~~~de~-~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~  162 (272)
                      ++.++++..+++|. ..+.|+.+|+|+|++.++++++|||||+|++.|+||+.|+|||+|++||+||++|++++++.+++
T Consensus        73 ~~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~  152 (166)
T d1xwna1          73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (166)
T ss_dssp             SCCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSC
T ss_pred             CCccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCC
Confidence            78888888888874 47889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEeEe
Q psy17824        163 PLQDVRVVKC  172 (272)
Q Consensus       163 P~~~i~I~~c  172 (272)
                      |..+|+|...
T Consensus       153 P~~~I~I~~a  162 (166)
T d1xwna1         153 PVDDVKIIKA  162 (166)
T ss_dssp             BSSCCCEEEE
T ss_pred             CCCCeEEEEe
Confidence            9999999876

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-43  Score=293.05  Aligned_cols=150  Identities=48%  Similarity=0.802  Sum_probs=139.3

Q ss_pred             EECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC
Q psy17824         13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT   92 (272)
Q Consensus        13 ~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~   92 (272)
                      ++..|++|+|+|+||.+.||++|+||+.||           +.+||+|+.||||+++|+||+||+ .+.+.++.+.++..
T Consensus         4 ~~i~T~~G~i~ieL~~~~aP~tv~nF~~l~-----------~~g~Y~g~~f~rv~~~~~iq~Gd~-~~~~~~~~~~~~~~   71 (155)
T d2fu0a1           4 AIIYTTMGDIHISLFYKECKKTVQNFSVHS-----------INGYYNNCIFHRVIKHFMVQTGDP-SGDGTGGESIWGNE   71 (155)
T ss_dssp             EEEEETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCT-TSSSSCCCCTTSSC
T ss_pred             EEEEEcccEEEEEEcCCCChHHHHHHhhHh-----------hCCccccceeeeeeecceeeccCC-CCCCcCCcccCCCc
Confidence            345699999999999999999999999999           567899999999999999999996 46667788888988


Q ss_pred             CCCCCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeE
Q psy17824         93 FEDENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVK  171 (272)
Q Consensus        93 ~~de~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~  171 (272)
                      ++++.. .+.|.++|+++|++.++++++|||||++++.|+||+.|+|||+|++||+||++|++++++.+++|+.+|+|.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~  151 (155)
T d2fu0a1          72 FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  151 (155)
T ss_dssp             BCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             cccccccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEE
Confidence            888866 5889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eee
Q psy17824        172 CNE  174 (272)
Q Consensus       172 cg~  174 (272)
                      |.+
T Consensus       152 v~i  154 (155)
T d2fu0a1         152 IKI  154 (155)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            964

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.7e-42  Score=290.81  Aligned_cols=146  Identities=44%  Similarity=0.743  Sum_probs=135.3

Q ss_pred             CeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCCCCC
Q psy17824         16 DIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGTFED   95 (272)
Q Consensus        16 ~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~~~d   95 (272)
                      .|++|+|+|+||.+.||++|+||+.||           +.+||+|+.||||+++|+||||++ .+.+.++.++++..+.+
T Consensus        22 ~T~~G~i~IeL~~d~aP~tv~nF~~L~-----------~~g~Y~~~~f~rv~~~~~iq~g~~-~~~~~~~~~~~~~~~~~   89 (169)
T d2b71a1          22 YTNLGDFEVELYWYHSPKTCLNFYTLC-----------EMGFYDNTIFHRVIPNFVIQGGDP-TGTGKGGKSIYGEYFED   89 (169)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEEEEEEETTTEEEEEET-TSSSSCCCBTTBSCBCC
T ss_pred             EeCceeEEEEEeCCCCcHHHHHHHHHh-----------hCCccceeeeccccceeeEecccc-ccccCCCcccccccccc
Confidence            488999999999999999999999999           678999999999999999999996 45555667777777877


Q ss_pred             CCc-CcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCCCCCCccCeEEeEee
Q psy17824         96 ENF-ELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDKMSRPLQDVRVVKCN  173 (272)
Q Consensus        96 e~~-~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~~P~~~i~I~~cg  173 (272)
                      |.. .++|..+|+|+|++.++++++|||||++++.|+||+.|+|||+|++||+||++|++++++.+++|..+|+|.+|+
T Consensus        90 e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          90 EINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             ccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            754 689999999999999999999999999999999999999999999999999999999999999999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-42  Score=287.78  Aligned_cols=155  Identities=29%  Similarity=0.425  Sum_probs=135.8

Q ss_pred             CCCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCC
Q psy17824          3 LIRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNG   82 (272)
Q Consensus         3 ~~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g   82 (272)
                      +.+|+|+|+     |++|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++|++|+|++....+
T Consensus         2 ~g~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~-----------~~~~Y~g~~fhRv~~~~~iq~G~~~~~~~   65 (166)
T d1v9ta_           2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV-----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ   65 (166)
T ss_dssp             CCSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBEEEEETTTEEEESSBCTTCC
T ss_pred             CCCCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHh-----------hCCccccceeeEEEEEeecccCCcCCccc
Confidence            578999998     89999999999999999999999999           56899999999999999999999765544


Q ss_pred             CCCCccCCCCCCCCCcCcCCCcceeEeeec-cCCCCCccEEEEEcCCCCCCCCC-----CcEEEEEecCHHHHHHHhcCC
Q psy17824         83 TGGESIYGGTFEDENFELKHDEPFLLSMAN-RGKDTNGSQFFITTQPAPHLDGV-----HVVFGHVVSGQNVVSHIENLP  156 (272)
Q Consensus        83 ~gg~s~~g~~~~de~~~~~h~~~G~lsm~~-~g~~s~~SqFfItl~~~p~ld~~-----~~VFG~Vi~G~dVl~~I~~~~  156 (272)
                      .+   .++.++.+|.....|+.+|+|+|++ .++++++|||||++++.|+||+.     |+|||+|++||+||++|+.++
T Consensus        66 ~~---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~  142 (166)
T d1v9ta_          66 QK---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP  142 (166)
T ss_dssp             BC---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSC
T ss_pred             cc---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCc
Confidence            33   3466788887766666688888887 56899999999999999998864     899999999999999999999


Q ss_pred             CCCC----CCCccCeEEeEeeeec
Q psy17824        157 VDKM----SRPLQDVRVVKCNELV  176 (272)
Q Consensus       157 ~d~~----~~P~~~i~I~~cg~l~  176 (272)
                      ++..    ++|..+|+|.+|++|.
T Consensus       143 ~~~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         143 THDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEEETTEEEEESSCCBEEEEEECC
T ss_pred             ccCCCCCCCccCCCeEEEEEEEcC
Confidence            8764    3899999999999983

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-42  Score=286.80  Aligned_cols=159  Identities=42%  Similarity=0.660  Sum_probs=140.4

Q ss_pred             CCCeEEEEEEECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCC
Q psy17824          4 IRPRCYFDVEISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGT   83 (272)
Q Consensus         4 ~~p~v~~di~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~   83 (272)
                      ..|..+.+.++..|++|+|+|+||.+.||+||+||+.||           +.++|+|+.|||++++|++|+|++......
T Consensus         3 ~~~~~~~~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~-----------~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~   71 (164)
T d2a2na1           3 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-----------RNGYYNGHTFHRIIKGFMIQTGDPTGTGMG   71 (164)
T ss_dssp             CSCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHH-----------HTTTTTTCBCCEEETTTEEEECCTTSSSSC
T ss_pred             CCCccccCEEEEEeceeEEEEEEcCCCChHHHHHHHHHH-----------hCCCcccceeeEEeeeeeEeecccccccCC
Confidence            457777788888999999999999999999999999999           678999999999999999999997544433


Q ss_pred             CCCccCCCCCCC-CCcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEecCHHHHHHHhcCCCCC-CC
Q psy17824         84 GGESIYGGTFED-ENFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVSGQNVVSHIENLPVDK-MS  161 (272)
Q Consensus        84 gg~s~~g~~~~d-e~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~-~~  161 (272)
                      +....+ ..+.+ ....+.|+.+|+|+|++.++++++|||||+|++.|+||+.|+|||+|++||+||++|++++++. ++
T Consensus        72 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~  150 (164)
T d2a2na1          72 GESIWG-GEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTD  150 (164)
T ss_dssp             CCCTTS-SCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTC
T ss_pred             Cceeee-cccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCC
Confidence            333333 34444 4568899999999999999999999999999999999999999999999999999999999985 57


Q ss_pred             CCccCeEEeEeee
Q psy17824        162 RPLQDVRVVKCNE  174 (272)
Q Consensus       162 ~P~~~i~I~~cg~  174 (272)
                      +|..+|+|.+|.+
T Consensus       151 ~P~~~V~I~~v~i  163 (164)
T d2a2na1         151 KPYEDVSIINITV  163 (164)
T ss_dssp             CBSSCCBEEEEEE
T ss_pred             CcCCCcEEEEEEE
Confidence            9999999999975

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.8e-40  Score=278.51  Aligned_cols=158  Identities=41%  Similarity=0.661  Sum_probs=134.6

Q ss_pred             EECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccC----CccceeeCcEEEEeecCceeeecCccCCCCCCCCcc
Q psy17824         13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTT----GKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESI   88 (272)
Q Consensus        13 ~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~----~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~   88 (272)
                      ++..|+.|+|+|+||++.||+||+||+.||++..+.+...    ....+|+|+.|||+++++++|||++. +.+.++.  
T Consensus         6 ~ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~-~~~~~~~--   82 (171)
T d1w74a_           6 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP--   82 (171)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-SSSSCCS--
T ss_pred             EEEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEccccc-CCCCCCc--
Confidence            3456999999999999999999999999998876554211    23458999999999999999999974 3333322  


Q ss_pred             CCCCCCCC-CcCcCCCcceeEeeeccCCCCCccEEEEEcCCCCCCCCCCcEEEEEec--CHHHHHHHhcCCCCCCCCCcc
Q psy17824         89 YGGTFEDE-NFELKHDEPFLLSMANRGKDTNGSQFFITTQPAPHLDGVHVVFGHVVS--GQNVVSHIENLPVDKMSRPLQ  165 (272)
Q Consensus        89 ~g~~~~de-~~~~~h~~~G~lsm~~~g~~s~~SqFfItl~~~p~ld~~~~VFG~Vi~--G~dVl~~I~~~~~d~~~~P~~  165 (272)
                       ...+.+| ...+.|+++|+|+|++.++++++|||||+|++.|+||++|+|||+|++  ||+||++|++++++.+++|..
T Consensus        83 -~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~  161 (171)
T d1w74a_          83 -GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTD  161 (171)
T ss_dssp             -SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSS
T ss_pred             -ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCC
Confidence             2234444 457899999999999999999999999999999999999999999994  999999999999999999999


Q ss_pred             CeEEeEeee
Q psy17824        166 DVRVVKCNE  174 (272)
Q Consensus       166 ~i~I~~cg~  174 (272)
                      +|+|.+|.+
T Consensus       162 ~i~I~~v~i  170 (171)
T d1w74a_         162 PVVIESITI  170 (171)
T ss_dssp             CCEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            999999865

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-39  Score=272.22  Aligned_cols=149  Identities=28%  Similarity=0.395  Sum_probs=126.1

Q ss_pred             EECCeeceeEEEEEcCCCChhHHHHHHHHhcccCCCCccCCccceeeCcEEEEeecCceeeecCccCCCCCCCCccCCCC
Q psy17824         13 EISDIPLGRIVFELYSDICPITCENFRALCTGEKGIGKTTGKNLHYLNIVFHRVVKGFMIQSGDFSVGNGTGGESIYGGT   92 (272)
Q Consensus        13 ~v~~t~~G~IvIeL~~d~aP~t~~nF~~L~~g~~g~g~~~~k~~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~s~~g~~   92 (272)
                      +...|+.|+|+|+||.+.||+||+||+.||           +.+||+|+.||||+++|+||+|++....+.+   .++.+
T Consensus         2 V~l~T~~G~i~ieL~~~~aP~t~~nF~~l~-----------~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~   67 (164)
T d1lopa_           2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEP   67 (164)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHH-----------HTTTTTTEECCEEETTTEEEESSEETTTEEC---CCCCC
T ss_pred             EEEEeCCeEEEEEEcCCCCHHHHHHHHHHH-----------HccCcCCceeeEEcCCceeeeeccccCCcCC---ccCCC
Confidence            445699999999999999999999999999           6789999999999999999999975443322   34667


Q ss_pred             CCCCCcCcCCCcceeEeeec-cCCCCCccEEEEEcCCC--------CCCCCCCcEEEEEecCHHHHHHHhcCCCCCCC--
Q psy17824         93 FEDENFELKHDEPFLLSMAN-RGKDTNGSQFFITTQPA--------PHLDGVHVVFGHVVSGQNVVSHIENLPVDKMS--  161 (272)
Q Consensus        93 ~~de~~~~~h~~~G~lsm~~-~g~~s~~SqFfItl~~~--------p~ld~~~~VFG~Vi~G~dVl~~I~~~~~d~~~--  161 (272)
                      |++|.....++.+|.|+|++ .++++++|||||++.+.        |+||+.|+|||+|++||+||++|++++++..+  
T Consensus        68 ~~~e~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~  147 (164)
T d1lopa_          68 IKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMH  147 (164)
T ss_dssp             BCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTE
T ss_pred             ccccccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCc
Confidence            88876544444567777775 57999999999999864        78999999999999999999999999997654  


Q ss_pred             --CCccCeEEeEeeee
Q psy17824        162 --RPLQDVRVVKCNEL  175 (272)
Q Consensus       162 --~P~~~i~I~~cg~l  175 (272)
                        +|..+|+|.++.++
T Consensus       148 ~~~P~~~v~I~~v~I~  163 (164)
T d1lopa_         148 QDVPKEDVIIESVTVS  163 (164)
T ss_dssp             EEEESSCCEEEEEEEC
T ss_pred             CCCcCCCeEEEEEEEe
Confidence              99999999999765

>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: TM1367-like
domain: Hypothetical protein TM1367
species: Thermotoga maritima [TaxId: 2336]

Probab=88.91  E-value=1.1  Score=33.12  Aligned_cols=45  Identities=22%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             cceeEeeeccCCCCCccEEEEEcCCCCCCC------CCCcEEEEEecCHHHHHHHh
Q psy17824        104 EPFLLSMANRGKDTNGSQFFITTQPAPHLD------GVHVVFGHVVSGQNVVSHIE  153 (272)
Q Consensus       104 ~~G~lsm~~~g~~s~~SqFfItl~~~p~ld------~~~~VFG~Vi~G~dVl~~I~  153 (272)
                      ..|-|++-..+.+     |.|-+++.|+-+      ....++|+|..|++.|..|.
T Consensus        62 ~~GDiaYw~pg~~-----iaifyg~tp~S~~~irlas~~n~iGki~~~~~~l~~i~  112 (124)
T d1zx8a1          62 EIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIK  112 (124)
T ss_dssp             CTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred             ccccEEEECCCCE-----EEEEECCccCCCCcccccCcceEeEEecCCHHHHhcCC
Confidence            4677777665544     888888877543      34679999999988776664