Psyllid ID: psy17828

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060-
MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQTEEDAIKLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRKADTDTSDYEDDEDLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKITNRDAEKKEITKSKVEDKPQEDKKPEIKVNISSSAQASSMPASTSRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKAAIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNSAHESSDHLQSTRHLQHVARHY
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHcccccEEccccccccccEEEEEEHHHHHHcccccccccccccccccccccccHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEccccccccccccccEEEEEccccccccccccccccHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHccccccEEHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEccHHHHHHHHccccHHHHHHcccccccccccccccccccEEEEccccHHHHHHHHHHcccccccccEEEEEEEEEEcccEEEEEEEEEEccccccccccEEEEcHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEccccccHHHHHHHHHHcccccEEEEcccccccccccccEEEEEEccccccccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHccHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHcccccHHHHHHccccccccccEEEEccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEcccEccEHHcccEEEEEEcccccEccccccccccHHHHHHcccHHHccccEEEEEEcHHHHHHHHHHHHHcccEEEEcEEEEEEccHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEccccHEEEHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccEEEccccccccccccccccHEEEHcHcccccccccccccccHHEEEEEHHcccEEEEEEccccEEEEEcccccccccEEEEccEEEEEEEHccccEEccccccEEEEEEEEccccccEEEEEcccEcccccccccccEEEEccHHHHHHHHHHHHHHHHHHEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEEEcccccccccccccHcHHHHccEccccccccEEEEccccccccEEEEEEccccccccHEEHHEEEcccccEEEEEccccccccHHHHHEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHHHHHHcEccccccccccccHHHHHHHHHHHHcc
MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILerdgslsparneedsvdtsyqteedaiklNPDLELELLEKLCDvslteedaiklnPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLItineskdddnqvEIVSVEHVKLLGMVNEVSKGIkrkadtdtsdyeddedlkkfkdngdetdvmsllskpsireKQVKQIGEEILDLLTKPTAKERSLAERFrsqsgnqvqeycshgtraeclrmkdtpnictkLHFRKIIqchtdeslgdcsflntcfhmdsckyvhyevdgakikgisdisdeGNKSLlektklyppqwiqcdlryldmtvLGKFAVimadppwdihmelpygtmsddemrqlgipqlqdeglLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLncqlsqdveftwpylgwmskfslhhFFQVVYLAAMIRSIIALHNLINnkitnrdaevnIEFNFSLQHFSQVVYLAAMIRSIIALHNLINnkitnrdaekkeitkskvedkpqedkkpeikvnisssaqassmpastsritFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNrmskignqKRVVGVLLGcwkgkgildvsnsfavpfdeddkdnsvwflDHDYLENMYGMFKKVNAREKVVGWyhtgpklhqndIQINELIRRYCTNSVLVIIdakpkelglpteayrvvdedkirperepnprpsankaaigkwktnttpnkaflcgrssrggkvgrircrshfsttgVLSIRRifnpigtwtfiriptttwpsrareKVVGwyhtgpklhqndIQINELIRRYCTNSVLVIIdakpkelglpteayrvvdevhddgspttktfdhvpseigaeeAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDkrsvthlsgpgrwllpwgWSIMMWVLVGWGVLGigwnsahessdhlqstrhlqHVARHY
MSDAWEEIQAikskrnslreklqkrkqerkdilerdgslsparneedsvdtsyqteeDAIKLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITineskdddnqVEIVSVEHVKLLGmvnevskgikrkadtdtsdyeddedlkkfkdngdetdvmsllskpsirekqVKQIGEEILdlltkptaKERSLAErfrsqsgnqvqeYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLektklyppqwiQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLinnkitnrdaekkeitkskvedkpqedkkpeikvnisssaqassmpastSRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFnrmskignqkrVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTgpklhqndiQINELIRRYCTNSVLVIidakpkelglpteayrvvdedkirperepnprpsankaaigkwktnttpnkaflcgrssrggkvgrircrshfsttgvlsirrifnpigtwtfiriptttwpsraREKVVGWYHtgpklhqndiQINELIRRYCTNSVLVIidakpkelglpTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNSAHessdhlqstrhlQHVARHY
MSDAWEEIQAIKSKRNSlreklqkrkqerkDILERDGSLSPARNEEDSVDTSYQTEEDAIKLNPDlelelleklCDVSLTEEDAIKLNPDlelelleklCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRKAdtdtsdyeddedLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKITNRDAEKKEITKSKVEDKPQEDKKPEIKVNIsssaqassmpastsRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKvvvhplvllsvvDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKAAIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIgaeeaeevgveHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMwvlvgwgvlgigwNSAHESSDHLQSTRHLQHVARHY
*************************************************************LNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEV**********************************************************************************YCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKI*********************************************RITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRV*************************WKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEV*************************VGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNS*********************
**DAWEE*QA******************************************************************************PDLELELLEKLCDVSLVLPITSQSLM************INLLHKFATQKL************VEIVSVEH**********************************************************************************************SHGTR************CT*LHFRKIIQC**D**LGDCSFLNTCFHMDSCKYVHYEVDG**************************QWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNK********NIEFNFSLQHFSQVVYLAAMIRSIIALHNLI****************************************************FLGYMDMAGETYGRYTHYVPALIM********************************VVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDE*******************IGKWKTNTT**********************SHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEV****SPTTKTFDHVPSEIGAEEAEEVGVEH*********************MGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNSAHESSDHLQSTRHL*******
MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILERDG******************EEDAIKLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRK***********EDLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKITNRDAEKKEI***************EIKVNI************TSRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKAAIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNSA********************
*SDAWEEIQAIKSKRNSLREKLQKRKQERKDILER**********************************************EDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRK********************GDETDVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGA*******************TKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKITNRDAE************************************STSRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKAAIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNS**********T*HLQHV**H*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSDAWEExxxxxxxxxxxxxxxxxxxxxxxxxxxxDGSLSPARNEEDSVDTSYQTEEDAIKLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSLMGTLNQEYTHLCLINLLHKFATQKLITINESKDDDNQVEIVSVEHVKLLGMVNEVSKGIKRKADTDTSDYEDDEDLKKFKDNGDETDVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGNKSLLEKTKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWVTGRAMELGRECLKLSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSIIALHNLINNKITNRDAEVNIEFNFSLQHFSQVVYLAAMIRSIIALHNLINNKITNRDAEKKEITKSKVEDKPQEDKKPEIKVNISSSAQASSMPASTSRITFLGYMDMAGETYGRYTHYVPALIMSVICNTRRVMFISHSGLVEVSKMVGQEVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKAAIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRYWPPFYVVVINLIDKRSVTHLSGPGRWLLPWGWSIMMWVLVGWGVLGIGWNSAHESSDHLQSTRHLQHVARHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1061 2.2.26 [Sep-21-2011]
Q86U44580 N6-adenosine-methyltransf yes N/A 0.377 0.689 0.415 3e-93
Q8C3P7580 N6-adenosine-methyltransf yes N/A 0.372 0.681 0.410 1e-91
P26270338 26S proteasome non-ATPase yes N/A 0.123 0.387 0.869 4e-73
Q9VCE6608 Probable N6-adenosine-met no N/A 0.348 0.608 0.368 6e-71
P26516321 26S proteasome non-ATPase no N/A 0.132 0.439 0.823 6e-66
Q3ZBD0322 26S proteasome non-ATPase no N/A 0.132 0.437 0.823 8e-66
P51665324 26S proteasome non-ATPase no N/A 0.132 0.435 0.823 1e-65
O82486685 N6-adenosine-methyltransf yes N/A 0.207 0.321 0.532 2e-63
Q6EU10706 Probable N6-adenosine-met yes N/A 0.188 0.283 0.522 5e-63
Q2HVD6614 Putative N6-adenosine-met N/A N/A 0.199 0.345 0.493 1e-60
>sp|Q86U44|MTA70_HUMAN N6-adenosine-methyltransferase 70 kDa subunit OS=Homo sapiens GN=METTL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  343 bits (881), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/460 (41%), Positives = 274/460 (59%), Gaps = 60/460 (13%)

Query: 1   MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQTEEDAI 60
           MSD W  IQA K + +SLRE+LQ+R+++    L+        RN E ++  +++++    
Sbjct: 1   MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLD-------LRNPEAALSPTFRSDSPV- 52

Query: 61  KLNPDLELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQSL---MGTL 117
              P        K    S   E  +  +P+LE +LL  L D++L LP  + S+   + T 
Sbjct: 53  ---PTAPTSGGPKPSTASAVPE--LATDPELEKKLLHHLSDLALTLPTDAVSICLAISTP 107

Query: 118 NQEYTHLCLINLLHKFATQKLITINES--KDDDNQVEIVSVEHVKLLGMVNEVSK----- 170
           +   T   + +LL KFA Q+LI +     +DD +   +   +H KL  M+  V++     
Sbjct: 108 DAPATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPG 167

Query: 171 -------GIKRKADTDTSDY--------------------EDDEDLKKFKDNGDETDVMS 203
                  G KR+A+ D++                      E  +  +K   +  + ++ S
Sbjct: 168 EVAGTVTGQKRRAEQDSTTVAAFASSLVSGLNSSASEPAKEPAKKSRKHAASDVDLEIES 227

Query: 204 LLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRM 263
           LL++ S +E+Q K++ +EIL+LL   TAKE+S+ E+FRS+   QVQE+C +GT+ EC++ 
Sbjct: 228 LLNQQSTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKA 287

Query: 264 KDTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDG---AKIKGISDI 320
            D    C KLHFR+II  HTDESLGDCSFLNTCFHMD+CKYVHYE+D    ++  G  D 
Sbjct: 288 SDADRPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDH 347

Query: 321 SDEGNKSLLEKT-------KLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYG 373
           +     +L +         +L+PPQWI CD+RYLD+++LGKFAV+MADPPWDIHMELPYG
Sbjct: 348 TPSQELALTQSVGGDSSADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYG 407

Query: 374 TMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLF 413
           T++DDEMR+L IP LQD+G LFLWVTGRAMELGRECL L+
Sbjct: 408 TLTDDEMRRLNIPVLQDDGFLFLWVTGRAMELGRECLNLW 447
N6-methyltransferase that methylates adenosine residues of some mRNAs. N6-methyladenosine (m6A), which is present at internal sites of some mRNAs, may play a role in the efficiency of mRNA splicing, transport or translation.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 2
>sp|Q8C3P7|MTA70_MOUSE N6-adenosine-methyltransferase 70 kDa subunit OS=Mus musculus GN=Mettl3 PE=2 SV=2 Back     alignment and function description
>sp|P26270|PSD7_DROME 26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6 Back     alignment and function description
>sp|Q9VCE6|MTA70_DROME Probable N6-adenosine-methyltransferase MT-A70-like protein OS=Drosophila melanogaster GN=CG5933 PE=2 SV=1 Back     alignment and function description
>sp|P26516|PSD7_MOUSE 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2 Back     alignment and function description
>sp|Q3ZBD0|PSD7_BOVIN 26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1 Back     alignment and function description
>sp|P51665|PSD7_HUMAN 26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2 Back     alignment and function description
>sp|O82486|MTA70_ARATH N6-adenosine-methyltransferase MT-A70-like OS=Arabidopsis thaliana GN=EMB1706 PE=1 SV=2 Back     alignment and function description
>sp|Q6EU10|MTA70_ORYSJ Probable N6-adenosine-methyltransferase MT-A70-like OS=Oryza sativa subsp. japonica GN=Os02g0672600 PE=2 SV=1 Back     alignment and function description
>sp|Q2HVD6|MTA70_MEDTR Putative N6-adenosine-methyltransferase MT-A70-like OS=Medicago truncatula GN=MtrDRAFT_AC148918g15v1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1061
242017410574 conserved hypothetical protein [Pediculu 0.371 0.686 0.535 1e-122
189238819540 PREDICTED: similar to n6-adenosine-methy 0.370 0.727 0.575 1e-119
193683437550 PREDICTED: n6-adenosine-methyltransferas 0.385 0.743 0.480 1e-107
427789097606 Putative n6-adenine rna methylase [Rhipi 0.373 0.653 0.492 1e-105
321476680537 hypothetical protein DAPPUDRAFT_192406 [ 0.354 0.700 0.503 1e-105
157109522595 n6-adenosine-methyltransferase ime4 [Aed 0.362 0.647 0.481 1e-103
157131635595 n6-adenosine-methyltransferase ime4 [Aed 0.362 0.647 0.479 1e-102
110749760556 PREDICTED: n6-adenosine-methyltransferas 0.354 0.676 0.488 1e-102
380027059556 PREDICTED: LOW QUALITY PROTEIN: N6-adeno 0.365 0.697 0.503 1e-101
307182701548 N6-adenosine-methyltransferase 70 kDa su 0.363 0.704 0.496 1e-101
>gi|242017410|ref|XP_002429182.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514060|gb|EEB16444.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/459 (53%), Positives = 315/459 (68%), Gaps = 65/459 (14%)

Query: 1   MSDAWEEIQAIKSKRNSLREKLQKRKQERKDILERDGSLSPARNEEDSVDTSYQ----TE 56
           MSDAWEEIQAIK+KRN+LREKLQKRK++R+D+L  +            + T++Q    T 
Sbjct: 1   MSDAWEEIQAIKTKRNTLREKLQKRKRDREDLLNSN------------LTTNFQDVSTTT 48

Query: 57  EDAIKLNPDL-----ELELLEKLCDVSLTEEDAIKLNPDLELELLEKLCDVSLVLPITSQ 111
           +  + L  D+      ++  E+  D        IK +P++E+++L++LC+VSL+LP TS+
Sbjct: 49  KSKLLLGKDITGISSPVQFKEETADKDEKGPLEIKPDPEIEIQVLKRLCEVSLILPTTSE 108

Query: 112 SLMG----TLNQEYTHLCLINLLHKFATQKLITINES-KDDDNQVEIVSVEHVKLLGMVN 166
            L      TLN E     +INLL KFA Q+LI I E+ K++ +  EIV+ +H KLL M N
Sbjct: 109 HLTSNIAKTLNVEVQEQVIINLLQKFAAQQLIVIKENFKENHHSFEIVTADHSKLLAMAN 168

Query: 167 EV-SKGI-----------KRKADTDTSDYEDD--------EDLKKFKDNGDETDVMSLLS 206
           E   KG            KR+ D ++ + + D        +D+K+ K+  +++D+  LLS
Sbjct: 169 EYDEKGKSDVEPDENNIKKRRLDKESEEEKSDSVKSETIKDDVKEMKEI-NQSDINFLLS 227

Query: 207 KPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDT 266
            PSI+EK+ K++GEEI+DLL+KPTAKERSLAERFRSQ G QV E+C HGT+ EC   K +
Sbjct: 228 MPSIKEKETKKVGEEIMDLLSKPTAKERSLAERFRSQGGAQVMEFCPHGTKLEC--QKSS 285

Query: 267 PNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEGN- 325
             +C KLHF+KIIQ HTDE+LGDCSFLNTCFHMD+CKYVHYEVD  K    + I D  N 
Sbjct: 286 KELCKKLHFKKIIQSHTDEALGDCSFLNTCFHMDTCKYVHYEVDNPK----TLIKDGNNS 341

Query: 326 KSLLEK-----------TKLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGT 374
           K + EK           T LYPPQWIQCDLRYLDM VLGKFAVIMADPPWDIHMELPYGT
Sbjct: 342 KEVFEKPGSASVSNRIGTILYPPQWIQCDLRYLDMRVLGKFAVIMADPPWDIHMELPYGT 401

Query: 375 MSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLF 413
           +SDDEMRQLG+PQLQD+GL+FLWVTGRAMELGRECL+L+
Sbjct: 402 LSDDEMRQLGVPQLQDDGLIFLWVTGRAMELGRECLQLW 440

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189238819|ref|XP_967914.2| PREDICTED: similar to n6-adenosine-methyltransferase ime4 [Tribolium castaneum] gi|270009967|gb|EFA06415.1| hypothetical protein TcasGA2_TC009294 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193683437|ref|XP_001945512.1| PREDICTED: n6-adenosine-methyltransferase 70 kDa subunit-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|427789097|gb|JAA60000.1| Putative n6-adenine rna methylase [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|321476680|gb|EFX87640.1| hypothetical protein DAPPUDRAFT_192406 [Daphnia pulex] Back     alignment and taxonomy information
>gi|157109522|ref|XP_001650708.1| n6-adenosine-methyltransferase ime4 [Aedes aegypti] gi|108868435|gb|EAT32660.1| AAEL015123-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157131635|ref|XP_001662288.1| n6-adenosine-methyltransferase ime4 [Aedes aegypti] gi|108871472|gb|EAT35697.1| AAEL012156-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|110749760|ref|XP_624299.2| PREDICTED: n6-adenosine-methyltransferase 70 kDa subunit-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380027059|ref|XP_003697253.1| PREDICTED: LOW QUALITY PROTEIN: N6-adenosine-methyltransferase 70 kDa subunit-like [Apis florea] Back     alignment and taxonomy information
>gi|307182701|gb|EFN69825.1| N6-adenosine-methyltransferase 70 kDa subunit [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1061
FB|FBgn0039139608 Ime4 "Inducer of meiosis 4" [D 0.150 0.263 0.692 2e-82
ZFIN|ZDB-GENE-030131-9498584 mettl3 "methyltransferase like 0.203 0.369 0.613 2.5e-81
UNIPROTKB|F1MX80580 METTL3 "Uncharacterized protei 0.212 0.387 0.570 1.4e-80
UNIPROTKB|F1S8J8582 METTL3 "Uncharacterized protei 0.212 0.386 0.570 2.2e-80
UNIPROTKB|Q86U44580 METTL3 "N6-adenosine-methyltra 0.212 0.387 0.570 5.8e-80
UNIPROTKB|E2R943580 METTL3 "Uncharacterized protei 0.212 0.387 0.570 7.4e-80
RGD|1311750580 Mettl3 "methyltransferase-like 0.212 0.387 0.566 7.4e-80
MGI|MGI:1927165580 Mettl3 "methyltransferase like 0.212 0.387 0.566 1.2e-79
TAIR|locus:2132731685 MTA "mRNAadenosine methylase" 0.203 0.315 0.554 2e-62
FB|FBgn0002787338 Rpn8 "Regulatory particle non- 0.137 0.431 0.794 2.6e-60
FB|FBgn0039139 Ime4 "Inducer of meiosis 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 611 (220.1 bits), Expect = 2.0e-82, Sum P(2) = 2.0e-82
 Identities = 115/166 (69%), Positives = 133/166 (80%)

Query:   265 DTPNICTKLHFRKIIQCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKGISDISDEG 324
             +T + CTKLHF+KIIQ HTDESLGDCSFLNTCFHM +CKYVHYEVD       +  +D  
Sbjct:   312 ETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCKYVHYEVDTLPHINTNKPTDVK 371

Query:   325 NKSLLEKT-----KLYPPQWIQCDLRYLDMTVLGKFAVIMADPPWDIHMELPYGTMSDDE 379
              K  L+++      LYPPQWIQCDLR+LDMTVLGKFAV+MADPPWDIHMELPYGTMSDDE
Sbjct:   372 TKLSLKRSVDSSCTLYPPQWIQCDLRFLDMTVLGKFAVVMADPPWDIHMELPYGTMSDDE 431

Query:   380 MRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQDEGLLFLWV 425
             MR LG+P LQD+GL+FLWVTGRAMELGR+CLKL+  +    L +WV
Sbjct:   432 MRALGVPALQDDGLIFLWVTGRAMELGRDCLKLWGYERVDEL-IWV 476
GO:0016422 "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity" evidence=ISS
GO:0001510 "RNA methylation" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0060968 "regulation of gene silencing" evidence=IMP
GO:0030707 "ovarian follicle cell development" evidence=IMP
GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=IMP
GO:0008593 "regulation of Notch signaling pathway" evidence=IMP
ZFIN|ZDB-GENE-030131-9498 mettl3 "methyltransferase like 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX80 METTL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8J8 METTL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q86U44 METTL3 "N6-adenosine-methyltransferase 70 kDa subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R943 METTL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311750 Mettl3 "methyltransferase-like 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1927165 Mettl3 "methyltransferase like 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2132731 MTA "mRNAadenosine methylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0002787 Rpn8 "Regulatory particle non-ATPase 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54WI8PSD7_DICDINo assigned EC number0.59420.12810.4184yesN/A
O74440RPN8_SCHPONo assigned EC number0.58150.13100.4290yesN/A
Q75F44RPN8_ASHGONo assigned EC number0.55710.12910.4202yesN/A
Q08723RPN8_YEASTNo assigned EC number0.51420.12910.4053yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
cd08062280 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) 5e-89
cd08062280 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) 4e-77
PLN03246303 PLN03246, PLN03246, 26S proteasome regulatory subu 4e-70
PLN03246303 PLN03246, PLN03246, 26S proteasome regulatory subu 5e-55
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 1e-39
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 3e-32
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 7e-29
cd08064265 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) 1e-25
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 1e-25
COG4725198 COG4725, IME4, Transcriptional activator, adenine- 4e-23
pfam05063176 pfam05063, MT-A70, MT-A70 2e-17
cd08063288 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) d 2e-13
pfam13012115 pfam13012, MitMem_reg, Maintenance of mitochondria 4e-13
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 6e-11
cd08062280 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) 2e-10
PLN03246303 PLN03246, PLN03246, 26S proteasome regulatory subu 5e-10
cd08062280 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) 9e-10
cd08063288 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) d 5e-09
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 8e-08
cd08064265 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) 1e-07
PLN03246303 PLN03246, PLN03246, 26S proteasome regulatory subu 2e-07
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 2e-06
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 3e-05
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 1e-04
COG1310134 COG1310, COG1310, Predicted metal-dependent protea 1e-04
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information 
 Score =  286 bits (735), Expect = 5e-89
 Identities = 107/137 (78%), Positives = 121/137 (88%), Gaps = 2/137 (1%)

Query: 637 KVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNS 696
           KVVVHPLVLLSVVDH+NR++K G  KRVVGVLLG WK KG+LDV+NSFAVPF+ED+KD S
Sbjct: 2   KVVVHPLVLLSVVDHYNRVAK-GTSKRVVGVLLGSWK-KGVLDVTNSFAVPFEEDEKDPS 59

Query: 697 VWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDA 756
           VWFLDH+YLENMYGMFKKVNA+EK+VGWY TGPKL  ND+ INEL RRYC N VLVIID 
Sbjct: 60  VWFLDHNYLENMYGMFKKVNAKEKIVGWYSTGPKLRPNDLDINELFRRYCPNPVLVIIDV 119

Query: 757 KPKELGLPTEAYRVVDE 773
           +PK+LGLPTEAY  V+E
Sbjct: 120 RPKDLGLPTEAYIAVEE 136

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural. Length = 280
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|227069 COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|218409 pfam05063, MT-A70, MT-A70 Back     alignment and domain information
>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|224229 COG1310, COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1061
KOG2098|consensus591 100.0
KOG1556|consensus309 100.0
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 100.0
PLN03246303 26S proteasome regulatory subunit; Provisional 100.0
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 100.0
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
KOG2975|consensus288 100.0
KOG2097|consensus397 100.0
KOG3050|consensus299 100.0
COG4725198 IME4 Transcriptional activator, adenine-specific D 99.98
PF05063176 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen 99.97
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.97
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 99.94
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.88
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.87
KOG1560|consensus339 99.82
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.81
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 99.7
KOG1554|consensus347 99.67
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.59
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.59
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.55
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.52
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.48
KOG2356|consensus366 99.46
PLN03246303 26S proteasome regulatory subunit; Provisional 99.43
KOG2098|consensus591 99.4
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.4
KOG1555|consensus316 99.27
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.08
KOG1556|consensus309 99.01
KOG2975|consensus288 98.84
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 98.69
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 98.67
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 98.53
PF13012115 MitMem_reg: Maintenance of mitochondrial structure 98.47
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 98.18
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 98.11
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 98.09
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 97.86
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 97.8
KOG3050|consensus299 97.69
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 97.68
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 97.23
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 95.72
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 94.77
KOG3289|consensus199 94.19
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 93.65
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 91.3
PF13012115 MitMem_reg: Maintenance of mitochondrial structure 88.67
PRK13699227 putative methylase; Provisional 87.64
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 85.88
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 85.54
PF13659117 Methyltransf_26: Methyltransferase domain; PDB: 3G 83.55
PF01555231 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th 82.96
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 82.06
>KOG2098|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.2e-111  Score=923.60  Aligned_cols=476  Identities=42%  Similarity=0.695  Sum_probs=419.3

Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHhhhhhhh-hhccCCC--CCCCCCcCCccccccCcccchhccCCchHHHHHhhhccC
Q psy17828          1 MSDAWEEIQAIKSKRNSLREKLQKRKQERKD-ILERDGS--LSPARNEEDSVDTSYQTEEDAIKLNPDLELELLEKLCDV   77 (1061)
Q Consensus         1 msd~w~~iqa~k~~~~~lre~l~~r~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (1061)
                      ||||| ++||||+++++||||||||||+... ++++++.  +.|+         -++++.++    ++++++.  ++.|+
T Consensus         1 m~d~~-d~~a~~t~~~~lr~rle~r~k~~d~hldl~~~~~~lv~~---------~~~s~d~v----l~a~sS~--~~lp~   64 (591)
T KOG2098|consen    1 MSDTW-DSQAHKTQLDSLRERLERRRKQDDGHLDLRNPEAALVPT---------LFRSDDPV----LTAPSSG--GPLPS   64 (591)
T ss_pred             CCcch-hhhhHHHHHHHHHHHHHHhhcccccchhhcCchhhhchh---------hhhccchh----hhccccC--CCCCc
Confidence            99999 6699999999999999999999444 6666644  4333         47888876    6676664  67778


Q ss_pred             CcchhhhccCChhHHHH-HHHHhhccccccccchHHHHhhhhh---hhhHHHHHHHHHHhhccCcEeeecccC-CCC-ce
Q psy17828         78 SLTEEDAIKLNPDLELE-LLEKLCDVSLVLPITSQSLMGTLNQ---EYTHLCLINLLHKFATQKLITINESKD-DDN-QV  151 (1061)
Q Consensus        78 ~~~~~~~~~~d~~~e~~-ll~~L~d~~l~lP~~s~~l~~~~~~---~~~~~~v~~lL~k~a~q~lI~i~~~~~-~~~-~~  151 (1061)
                      .++..+++..|+|+|+. +|++|+|..+.+|++-..++..+..   |.++..|..+|+++++|.+++.+.... ++. +.
T Consensus        65 vas~v~e~~~~~elekl~~~~~~a~q~~~~~~dl~~~cl~~sv~~~p~~~~~vl~~lndqn~~~ae~a~r~~~~dd~~pi  144 (591)
T KOG2098|consen   65 VASAVPELATDPELEKLRLLHHLADQALTLPTDLVSICLAISVPDAPATQDGVLSLLNDQNAQEAEEAKRGLLQDDAHPI  144 (591)
T ss_pred             hhhcCcccccChHHHHHhhhhhhhhhhccCcHHhhhhheEecCCCCccchhHHHHHhhhhhhhhhhhhhhhhhcccccch
Confidence            88899999999999998 9999999999999999998888866   667899999999999999999998888 444 99


Q ss_pred             EEEEeehHhHHhHHHHhhh--h----------hccccCCCCC-----------------CCcchhhhhhccCC-CC--hh
Q psy17828        152 EIVSVEHVKLLGMVNEVSK--G----------IKRKADTDTS-----------------DYEDDEDLKKFKDN-GD--ET  199 (1061)
Q Consensus       152 ~i~~~~~~kl~~m~~~~~~--~----------~kr~~~~~~s-----------------~~~~~e~~~k~~~~-~~--~~  199 (1061)
                      .++..+++++.+++++++.  |          .+|++++++.                 ..+..+..+|++++ .+  ..
T Consensus       145 l~~~~~~~~~a~k~~s~~~~~g~~~vm~l~t~p~~~~eqds~qv~e~~l~lln~~~~sa~~p~~d~~~~~r~h~~~~v~~  224 (591)
T KOG2098|consen  145 LVTYADHSKLAAKMGSVAEKKGPGEVMGLVTGPKRRAEQDSTQVAEFALSLLNGLNSSASEPAKDPAKKFRKHAASDVML  224 (591)
T ss_pred             hhhHHHHHHHHHhccchhhccCCcceeeeecCchhhhhHHHHHHHHHHHHHHhccCccccCCCCCchhccCCcchhHHHH
Confidence            9999999999999999872  2          4555555422                 23446667778876 32  78


Q ss_pred             hhHhhhCCcchHHHHHHHHhHHHHHhcCCccHHHHHHHHHHHhhcCcccccccCccCHHHHhhcCCCccccccccccccc
Q psy17828        200 DVMSLLSKPSIREKQVKQIGEEILDLLTKPTAKERSLAERFRSQSGNQVQEYCSHGTRAECLRMKDTPNICTKLHFRKII  279 (1061)
Q Consensus       200 ~~e~Ll~~~s~~e~~~~~~~~e~~~ll~~~ta~e~~~~~~f~~~~~~~~~e~c~~~t~~~c~~~~~~~~~c~k~hf~~~i  279 (1061)
                      ++|.||+++|++|++++++++|+++|+..+||+|.+..++|+++|++||+++|.++|+++|+.++++..+|+|+||+|||
T Consensus       225 ~ve~L~~qqst~e~~~~k~~~e~lelip~~ta~e~at~~~~k~~~~aqvi~~c~~~tke~c~~~s~~~~~c~KlHFrriI  304 (591)
T KOG2098|consen  225 EVESLLNQQSTKEQQSKKVSQEILELIPTTTAKEQATVEKFKSRGRAQVIEFCDYGTKEECMKASDADRPCRKLHFRRII  304 (591)
T ss_pred             HHHHHHcCccHHHHHHHhhhhHHHHhcCCCchhhhhhhhhhhhhhhhhhhhhhccccHhhhhccccccchhhhhHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcCCCCCCCCccceeeeeecCccCC-C--CCCCcc----ccccc---ccccccCCCCceecccCccCc
Q psy17828        280 QCHTDESLGDCSFLNTCFHMDSCKYVHYEVDGAKIKG-I--SDISDE----GNKSL---LEKTKLYPPQWIQCDLRYLDM  349 (1061)
Q Consensus       280 ~~htd~~lgdcs~L~tc~~~~tC~y~hy~~~~~~~~~-~--~~~~~~----~~~~~---~~~~~~~Ppq~i~cDlr~~d~  349 (1061)
                      ++|||+||||||||||||||+|||||||++|.+.... .  .+.+.+    ...++   .+...++|||||+||||+|||
T Consensus       305 ~~hTD~SLGDCSfLnTC~hm~TCkYVHYe~d~~~~~~a~~~~~t~~k~~l~~~rsv~~~ss~~~l~p~QWI~CDiR~~dm  384 (591)
T KOG2098|consen  305 NKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDTTPKQELALTRSVGGDSSADRLFPPQWICCDIRYLDM  384 (591)
T ss_pred             ccccccccccchhHhhhhhhcccceeeeecccchhhhcCCCCCCChhhhhcccccccccccccccCCcceEEeeceeeee
Confidence            9999999999999999999999999999999998763 2  222211    12222   245569999999999999999


Q ss_pred             ccCCCccEEEECCCccccccCCCCCCChHHHhcCCccccCCCcEEEEecCccchHHHHHHhhcccee--ccceeEEEc--
Q psy17828        350 TVLGKFAVIMADPPWDIHMELPYGTMSDDEMRQLGIPQLQDEGLLFLWVTGRAMELGRECLKLFMLQ--DEGLLFLWV--  425 (1061)
Q Consensus       350 ~~lgkFdvIlaDPPW~~~~~~~Y~tms~deI~~LPV~~La~~g~LFLWvT~~~Le~g~elL~~WGf~--~et~~ivWV--  425 (1061)
                      ++||||.||||||||++||++||+||+++||+.|||+.||++|++||||||++||+|||||..|||+  ++   ++||  
T Consensus       385 ~iLGkFaVVmADPpWdIHMeLPYGTm~DdEmr~L~vp~LQddGlIFLWVTGRAmELGrecLnlWGY~rVdE---iiWVKT  461 (591)
T KOG2098|consen  385 SILGKFAVVMADPPWDIHMELPYGTMTDDEMRRLNVPVLQDDGLIFLWVTGRAMELGRECLNLWGYERVDE---IIWVKT  461 (591)
T ss_pred             eeeceeEEEeeCCCccceeecCccccchHHhhcCCCcccccCcEEEEEEcchHHHHHHHHHHhhchhhhhe---eEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  77   9999  


Q ss_pred             -----------CCcccccCeE-EEe------cccccCCCccEEEecCCCCCccCCcccchhhhhhhccchhhh---cccc
Q psy17828        426 -----------TGRAMELGRE-CLK------LSLNCQLSQDVEFTWPYLGWMSKFSLHHFFQVVYLAAMIRSI---IALH  484 (1061)
Q Consensus       426 -----------tG~~l~~~kE-CLv------~~i~~nid~DVIvsep~~g~s~Kp~l~~~~~iE~f~~~~Rrl---gr~~  484 (1061)
                                 ||+||+|+|| |||      .|+|+++||||||++.+.. |+||. |+|-+||.+.++.|+|   ||+|
T Consensus       462 NQLqRiIrTGRTGHWLNH~KEHcLVG~KGNP~~~Nr~iD~DvIVaevReT-S~KPD-EiYgmiERlsp~tRKiElFgR~H  539 (591)
T KOG2098|consen  462 NQLQRIIRTGRTGHWLNHGKEHCLVGVKGNPQGFNRGLDCDVIVAEVRET-SHKPD-EIYGMIERLSPGTRKIELFGRPH  539 (591)
T ss_pred             chhhhheecCccccccccCcceeEeeeccChhhhccCCCcceeehhhhhh-cCCcH-HHHHHHHHhCCCcceeeeecCcc
Confidence                       5669999999 999      5799999999999996666 78886 7788999999999997   9999


Q ss_pred             ccCCCccccCCcc
Q psy17828        485 NLINNKITNRDAE  497 (1061)
Q Consensus       485 nlr~gWvT~g~~~  497 (1061)
                      |++|||+|+|++.
T Consensus       540 N~~p~WiTlGNQL  552 (591)
T KOG2098|consen  540 NVQPNWITLGNQL  552 (591)
T ss_pred             CCCCCeEEecccc
Confidence            9999999999885

>KOG1556|consensus Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>KOG2097|consensus Back     alignment and domain information
>KOG3050|consensus Back     alignment and domain information
>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>KOG1560|consensus Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>KOG1554|consensus Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>KOG2356|consensus Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>KOG2098|consensus Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>KOG1555|consensus Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>KOG1556|consensus Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>KOG3050|consensus Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>KOG3289|consensus Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A Back     alignment and domain information
>PRK13699 putative methylase; Provisional Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A Back     alignment and domain information
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 1e-58
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 2e-37
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 2e-58
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 1e-32
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 2e-32
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 8e-30
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 2e-04
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 115/124 (92%), Gaps = 1/124 (0%)
Query: 650 DHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMY 709
           DHFNR+ K+GNQKRVVGVLLG W+ K +LDVSNSFAVPFDEDDKD+SVWFLDHDYLENMY
Sbjct: 22  DHFNRIGKVGNQKRVVGVLLGSWQKK-VLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 80
Query: 710 GMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYR 769
           GMFKKVNARE++VGWYHTGPKLH+NDI INEL++RYC NSVLVIID KPK+LGLPTEAY 
Sbjct: 81  GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 140
Query: 770 VVDE 773
            V+E
Sbjct: 141 SVEE 144
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 6e-50
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 6e-35
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 7e-48
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 1e-15
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
 Score =  174 bits (441), Expect = 6e-50
 Identities = 116/142 (81%), Positives = 129/142 (90%), Gaps = 1/142 (0%)

Query: 632 EVVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDED 691
           E+   KVVVHPLVLLSVVDHFNR+ K+GNQKRVVGVLLG W+ K + DVSNSFAVPFDED
Sbjct: 4   ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVL-DVSNSFAVPFDED 62

Query: 692 DKDNSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCTNSVL 751
           DKD+SVWFLDHDYLENMYGMFKKVNARE++VGWYHTGPKLH+NDI INEL++RYC NSVL
Sbjct: 63  DKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVL 122

Query: 752 VIIDAKPKELGLPTEAYRVVDE 773
           VIID KPK+LGLPTEAY  V+E
Sbjct: 123 VIIDVKPKDLGLPTEAYISVEE 144
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1061
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 100.0
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 100.0
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 100.0
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 99.95
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.51
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.44
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.18
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.18
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 98.96
2kks_A146 Uncharacterized protein; NESG, structural genomics 98.43
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 98.34
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 98.18
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 97.49
1g60_A260 Adenine-specific methyltransferase MBOIIA; structu 95.89
1boo_A323 Protein (N-4 cytosine-specific methyltransferase P 95.68
1eg2_A319 Modification methylase RSRI; rossmann fold, exocyc 93.6
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 91.71
2zig_A297 TTHA0409, putative modification methylase; methylt 91.45
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 91.01
3lpm_A259 Putative methyltransferase; structural genomics, p 89.25
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 81.96
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=4.6e-48  Score=428.05  Aligned_cols=229  Identities=50%  Similarity=0.878  Sum_probs=180.5

Q ss_pred             cccceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHH
Q psy17828        633 VVTSKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMF  712 (1061)
Q Consensus       633 ~~~~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~Mlemf  712 (1061)
                      ....+|.|||||||+|+|||+|.+. +.+.||+|+|||.+.| ++|+|+|||++|+++++++.++|++|++|+++|++||
T Consensus         3 ~~~~~V~vhPlVll~I~dH~~R~~~-~~~~rViG~LLG~~~~-~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~   80 (338)
T 4b4t_U            3 LQHEKVTIAPLVLLSALDHYERTQT-KENKRCVGVILGDANS-STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMC   80 (338)
T ss_dssp             CCCSEEEECHHHHHHHHHHHHHHTT-TCCSCCEEEEEEEECS-SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHH
T ss_pred             CCCCEEEEecHHHHHHHHHHHHhhc-CCCCeEEEEEEeEEcC-CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHH
Confidence            3457999999999999999999654 4568999999999976 5799999999999998888889999999999999999


Q ss_pred             HhhcCCCceEEEEecCCCCCcccHHHHHHHHhhCC-CcEEEEEcCCCCCCCcceEEEEecccccCCCCCCCCCCCCcccc
Q psy17828        713 KKVNAREKVVGWYHTGPKLHQNDIQINELIRRYCT-NSVLVIIDAKPKELGLPTEAYRVVDEDKIRPEREPNPRPSANKA  791 (1061)
Q Consensus       713 KkVnp~E~VVGWYsTGp~ls~~Dl~Ihe~f~~~~~-nPI~LivDPs~ss~gLplKAYrlv~e~~~~~g~e~~~~~~~~~a  791 (1061)
                      |+|||++.+||||+||+.+++.|+.||++|+++++ +|++|++|+....++                             
T Consensus        81 kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~-----------------------------  131 (338)
T 4b4t_U           81 KKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVG-----------------------------  131 (338)
T ss_dssp             HHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSS-----------------------------
T ss_pred             hhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCC-----------------------------
Confidence            99999999999999999998888888888888774 666666666544444                             


Q ss_pred             cccccccCCCCCccccccccCCCCccccccccccccccccceeeeecCCCCCcceecccCcCCCCCCccceeeeeccCCC
Q psy17828        792 AIGKWKTNTTPNKAFLCGRSSRGGKVGRIRCRSHFSTTGVLSIRRIFNPIGTWTFIRIPTTTWPSRAREKVVGWYHTGPK  871 (1061)
Q Consensus       792 ~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~m~~L~qKVNPkE~IVGWYsTGse  871 (1061)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (338)
T 4b4t_U          132 --------------------------------------------------------------------------------  131 (338)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchHHHHHHHHhhcCCceEEEEcCCCCCCCCCceeEEEeeeccCCCCcceeeEEeecccccccccccccccccccccc
Q psy17828        872 LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRVVDEVHDDGSPTTKTFDHVPSEIGAEEAEEVGVEHLLRDIK  951 (1061)
Q Consensus       872 lt~~s~lIHefys~~~~~PIhL~VDt~~~~~~LPi~AYvsv~ev~~dGs~~~k~Fv~VP~~I~aeEAErIgVEhLlr~i~  951 (1061)
                                                      +|++||+++.++..+|......|+++|++|.++|||||||+|++|+..
T Consensus       132 --------------------------------lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~  179 (338)
T 4b4t_U          132 --------------------------------LPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVR  179 (338)
T ss_dssp             --------------------------------CSEEEEEEEEECSSCSTTCEEEEEEECEEECSCHHHHHHHHHHHHHHS
T ss_pred             --------------------------------cceEEEEeehhccCCCcccccEEEEeeeEeecCcHHHHHHHHHHhccc
Confidence                                            455555554445455666677899999999999999999999999998


Q ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHhhc
Q psy17828        952 DTTVGSLSQRVTNQLMGLKGLNQQIKEIEKYVGQVSRY-WPPFYVVVINLIDKR 1004 (1061)
Q Consensus       952 dat~s~L~s~l~~~~~aLk~L~~rL~~I~~YLd~V~~g-vpp~~~ilr~l~~~~ 1004 (1061)
                      +.+.+.+..++.++.+++++|+.+|+.|.+||++|.+| +|+||.|+|.|++.+
T Consensus       180 ~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~  233 (338)
T 4b4t_U          180 DQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVF  233 (338)
T ss_dssp             SCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999 999999999999853
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Back     alignment and structure
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 Back     alignment and structure
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1061
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 96.46
d2gaua181 Transcriptional regulator PG0396, C-terminal domai 84.11
d1i5za169 Catabolite gene activator protein (CAP), C-termina 83.94
d2zcwa182 Transcriptional regulator TTHA1359, C-terminal dom 83.48
d2esra1152 Putative methyltransferase SPy1538 {Streptococcus 81.24
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.46  E-value=0.0023  Score=59.27  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             ceEEEeehhHhhHHHHHhhccccCCceeEEEEEeeEEecCcEEEEEEEeeccccCCCCCCccccccHHHHHHHHHHHHhh
Q psy17828        636 SKVVVHPLVLLSVVDHFNRMSKIGNQKRVVGVLLGCWKGKGILDVSNSFAVPFDEDDKDNSVWFLDHDYLENMYGMFKKV  715 (1061)
Q Consensus       636 ~~V~VHPLVLLsIsDH~tR~~~~~~~~rVvGvLLG~~~g~gtVEVTNSFaVP~eEde~d~~v~~lD~~Y~e~MlemfKkV  715 (1061)
                      .++.|.--++-.|++|+.+    ..+..++|.|+|..   +  .|+..+.+|....+..    ..   |..+|.      
T Consensus         2 ~~l~I~~~~l~~i~~hA~~----~~P~E~cGlL~G~~---~--~i~~~~~~~n~~~~~~----~~---~~~~~~------   59 (121)
T d1oi0a_           2 SSMKISRGLLKTILEAAKS----AHPDEFIALLSGSK---D--VMDELIFLPFVSGSVS----AV---IHLDML------   59 (121)
T ss_dssp             CSCEECHHHHHHHHHHHHH----HTTSCCEEEEEEST---T--EECEEEECCCCC-------------------------
T ss_pred             CeEEECHHHHHHHHHHHHh----cCCceeEEEEEecC---C--cEEEEEEcCCCCCCcc----cc---cccchh------
Confidence            3566777888899999987    45789999999963   3  3667788875433211    11   111121      


Q ss_pred             cCCCceEEEEecCCC----CCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceEEEEe
Q psy17828        716 NAREKVVGWYHTGPK----LHQNDIQINELIRRYCTNSVLVIIDAKPKELGLPTEAYRV  770 (1061)
Q Consensus       716 np~E~VVGWYsTGp~----ls~~Dl~Ihe~f~~~~~nPI~LivDPs~ss~gLplKAYrl  770 (1061)
                      -..+++||||||+|.    +++.|+.....     ..-+++|+-+-...  -.++||+.
T Consensus        60 ~~~~~ivgi~HSHP~~~a~PS~~D~~~~~~-----~g~~~~Ivs~p~~~--~~~~~~~~  111 (121)
T d1oi0a_          60 PIGMKVFGTVHSHPSPSCRPSEEDLSLFTR-----FGKYHIIVCYPYDE--NSWKCYNR  111 (121)
T ss_dssp             -CCCEEEEEEEEESSSCCSCCHHHHHHHHH-----SCSEEEEEETTCCT--TCEEEEET
T ss_pred             hcCCeEEEEEEecCCCCCCcCHHHHHhhhc-----cCCEEEEEeCCCCC--CCEEEEeC
Confidence            247899999999885    67777655332     23467777653222  24788864
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure