Psyllid ID: psy17866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQINGGSLSS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MVNVVEALQEFWQMKQTRGAELKNGALVIyesvpsasppyvcyvtlpggscfgsfqtLEVEVSRSQMALDWIAREqenpgalgRELDQAERELETARLAgrelrfpkeKKDILMLAHTqinggslss
Flexible Loop (DISEMBL)
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETarlagrelrfpkekkdiLMLAhtqinggslss
Low Complexity Region (SEG)
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQINGGSLSS
Disordered region (IsUnstruct)
****VEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIA******************************************************
Disordered Region (DISOPRED)
*VNVVEALQEF*****************IYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAR*Q************AERELETARLAGRELRFPKEKKDILMLAHT*********
Disordered Region (DISEMBL)
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQINGGSLSS
Disordered Region (DISPRO)
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQIN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTLEVEVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQINGGSLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q5PQQ7	338	LIX1-like protein OS=Ratt	yes	N/A	0.425	0.159	0.909	9e-26
Q8BQ89	337	LIX1-like protein OS=Mus	yes	N/A	0.425	0.160	0.909	1e-25
Q8IVB5	337	LIX1-like protein OS=Homo	yes	N/A	0.425	0.160	0.909	1e-25
Q6P566	282	Protein limb expression 1	no	N/A	0.433	0.195	0.618	1e-15
Q8N485	282	Protein limb expression 1	no	N/A	0.433	0.195	0.581	2e-14
Q8UVV7	281	Protein limb expression 1	yes	N/A	0.440	0.199	0.571	2e-14

>sp|Q5PQQ7|LIX1L_RAT LIX1-like protein OS=Rattus norvegicus GN=Lix1l PE=2 SV=1

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
           VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 99  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 153

Rattus norvegicus (taxid: 10116)

>sp|Q8BQ89|LIX1L_MOUSE LIX1-like protein OS=Mus musculus GN=Lix1l PE=2 SV=2

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
           VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 98  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 152

Mus musculus (taxid: 10090)

>sp|Q8IVB5|LIX1L_HUMAN LIX1-like protein OS=Homo sapiens GN=LIX1L PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
           VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 98  VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 152

Homo sapiens (taxid: 9606)

>sp|Q6P566|LIX1_MOUSE Protein limb expression 1 homolog OS=Mus musculus GN=Lix1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
          +NVV  LQEFW+ KQ + A   +  LV+YES+PS+ PP+V YVTLPGGSCFG+FQ
Sbjct: 28 LNVVSMLQEFWESKQQQKATFSSEGLVVYESMPSSGPPFVSYVTLPGGSCFGNFQ 82

Mus musculus (taxid: 10090)

>sp|Q8N485|LIX1_HUMAN Protein limb expression 1 homolog OS=Homo sapiens GN=LIX1 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
          +NVV  LQEFW+ KQ + A   +  +V+YES+P+  PP+V YVTLPGGSCFG+FQ
Sbjct: 28 LNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYVTLPGGSCFGNFQ 82

Homo sapiens (taxid: 9606)

>sp|Q8UVV7|LIX1_CHICK Protein limb expression 1 OS=Gallus gallus GN=LIX1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
          +NVV  LQEFW+ KQ + A L +  +++YES+ S  PP+V YVTLPGGSCFG+FQ+
Sbjct: 28 LNVVAILQEFWESKQKKKAVLPSEGIIVYESLSSLGPPFVSYVTLPGGSCFGNFQS 83

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
321475874	258	hypothetical protein DAPPUDRAFT_22257 [D	0.440	0.217	0.928	6e-25
307204645	286	LIX1-like protein [Harpegnathos saltator	0.433	0.192	0.928	7e-25
242015504	246	conserved hypothetical protein [Pediculu	0.448	0.231	0.877	2e-24
301630535	331	PREDICTED: LIX1-like protein-like [Xenop	0.433	0.166	0.945	2e-24
195434154	266	GK14872 [Drosophila willistoni] gi|19416	0.433	0.206	0.910	2e-24
307177703	302	LIX1-like protein [Camponotus floridanus	0.433	0.182	0.892	4e-24
345484688	301	PREDICTED: LOW QUALITY PROTEIN: LIX1-lik	0.433	0.182	0.892	4e-24
380012456	302	PREDICTED: LIX1-like protein-like [Apis	0.433	0.182	0.892	6e-24
328781196	302	PREDICTED: LIX1-like protein-like isofor	0.433	0.182	0.892	6e-24
351703773	276	LIX1-like protein [Heterocephalus glaber	0.425	0.195	0.909	6e-24

>gi|321475874|gb|EFX86835.1| hypothetical protein DAPPUDRAFT_22257 [Daphnia pulex]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
          VNVVEALQEFWQMKQ RGA+LKNGALVIYESVPS+SPPYVCYVTLPGGSCFGSFQ 
Sbjct: 27 VNVVEALQEFWQMKQARGADLKNGALVIYESVPSSSPPYVCYVTLPGGSCFGSFQN 82

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204645|gb|EFN83267.1| LIX1-like protein [Harpegnathos saltator]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 54/56 (96%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
          VNVVEALQEFWQMKQ+RGAEL+NGALVIYESVP ASPPYVCYVTLPGGSCFGSFQ 
Sbjct: 37 VNVVEALQEFWQMKQSRGAELRNGALVIYESVPGASPPYVCYVTLPGGSCFGSFQN 92

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015504|ref|XP_002428393.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513005|gb|EEB15655.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 54/57 (94%)

Query: 1  MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
          + NVVEALQEFWQMKQ RGA+L+NGALVIYESVPS+SPPYVCYVTLPGGSCFGSFQ 
Sbjct: 8  LFNVVEALQEFWQMKQARGADLRNGALVIYESVPSSSPPYVCYVTLPGGSCFGSFQN 64

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301630535|ref|XP_002944372.1| PREDICTED: LIX1-like protein-like [Xenopus (Silurana) tropicalis]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/55 (94%), Positives = 53/55 (96%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
           VNVVEALQEFWQMKQTRGAELKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ
Sbjct: 92  VNVVEALQEFWQMKQTRGAELKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ 146

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195434154|ref|XP_002065068.1| GK14872 [Drosophila willistoni] gi|194161153|gb|EDW76054.1| GK14872 [Drosophila willistoni]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 54/56 (96%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
          VNVVEALQEFWQMKQ+RGAELKNGALVIYES+PS SPPYVC+VTLPGGSCFGSFQ 
Sbjct: 23 VNVVEALQEFWQMKQSRGAELKNGALVIYESIPSNSPPYVCFVTLPGGSCFGSFQN 78

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177703|gb|EFN66731.1| LIX1-like protein [Camponotus floridanus]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 53/56 (94%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
           VNVVEALQEFWQMKQ RGAEL+NGALVIYESVP A+PPY+CYVTLPGGSCFGSFQ 
Sbjct: 53  VNVVEALQEFWQMKQARGAELRNGALVIYESVPGANPPYICYVTLPGGSCFGSFQN 108

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484688|ref|XP_001599625.2| PREDICTED: LOW QUALITY PROTEIN: LIX1-like protein-like [Nasonia vitripennis]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 53/56 (94%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
           VNVVEALQEFWQMKQ+RG EL+NGALVIYESVP A+PPYVCYVTLPGGSCFGSFQ 
Sbjct: 52  VNVVEALQEFWQMKQSRGTELRNGALVIYESVPGANPPYVCYVTLPGGSCFGSFQN 107

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012456|ref|XP_003690299.1| PREDICTED: LIX1-like protein-like [Apis florea]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 52/56 (92%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
           VNVVEALQEFWQMKQ+RG EL+NGALVIYESVP  SPPYVCYVTLPGGSCFGSFQ 
Sbjct: 53  VNVVEALQEFWQMKQSRGTELRNGALVIYESVPGTSPPYVCYVTLPGGSCFGSFQN 108

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781196|ref|XP_623659.3| PREDICTED: LIX1-like protein-like isoform 2 [Apis mellifera]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 52/56 (92%)

Query: 2   VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQT 57
           VNVVEALQEFWQMKQ+RG EL+NGALVIYESVP  SPPYVCYVTLPGGSCFGSFQ 
Sbjct: 53  VNVVEALQEFWQMKQSRGTELRNGALVIYESVPGTSPPYVCYVTLPGGSCFGSFQN 108

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|351703773|gb|EHB06692.1| LIX1-like protein [Heterocephalus glaber]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 54/55 (98%)

Query: 2  VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
          VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS+SPPYVCYVTLPGGSCFGSFQ
Sbjct: 18 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSSSPPYVCYVTLPGGSCFGSFQ 72

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0032230	268	lft "lowfat" [Drosophila melan	0.503	0.238	0.787	2.9e-48
MGI|MGI:3036267	337	Lix1l "Lix1-like" [Mus musculu	0.503	0.189	0.803	5.9e-44
RGD|1593161	338	Lix1l "Lix1 homolog (mouse)-li	0.503	0.189	0.803	5.9e-44
UNIPROTKB|A2VE91	337	LIX1L "Uncharacterized protein	0.503	0.189	0.787	1.6e-43
UNIPROTKB|Q8IVB5	337	LIX1L "LIX1-like protein" [Hom	0.503	0.189	0.803	2e-43
MGI|MGI:1913893	282	Lix1 "limb expression 1 homolo	0.433	0.195	0.618	6.9e-32

FB|FBgn0032230 lft "lowfat" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 52/66 (78%), Positives = 57/66 (86%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTL--E 59
             VNVVEALQEFWQMKQ+RGAELKNGALVIYES+PS S PY+C+VTLPGGSCFGSFQ    +
Sbjct:    25 VNVVEALQEFWQMKQSRGAELKNGALVIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTK 84

Query:    60 VEVSRS 65
              E  RS
Sbjct:    85 AEARRS 90

GO:0035003 "subapical complex" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:3036267 Lix1l "Lix1-like" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ--TLE 59
             VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ    +
Sbjct:    98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 157

Query:    60 VEVSRS 65
              E  RS
Sbjct:   158 AEARRS 163

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1593161 Lix1l "Lix1 homolog (mouse)-like" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ--TLE 59
             VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ    +
Sbjct:    99 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 158

Query:    60 VEVSRS 65
              E  RS
Sbjct:   159 AEARRS 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A2VE91 LIX1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 52/66 (78%), Positives = 57/66 (86%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ--TLE 59
             VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VP+ SPPYVCYVTLPGGSCFGSFQ    +
Sbjct:    98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPANSPPYVCYVTLPGGSCFGSFQFCPTK 157

Query:    60 VEVSRS 65
              E  RS
Sbjct:   158 AEARRS 163

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8IVB5 LIX1L "LIX1-like protein" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ--TLE 59
             VNVVEALQEFWQMKQ+RGA+LKNGALV+YE VPS SPPYVCYVTLPGGSCFGSFQ    +
Sbjct:    98 VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTK 157

Query:    60 VEVSRS 65
              E  RS
Sbjct:   158 AEARRS 163

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913893 Lix1 "limb expression 1 homolog (chicken)" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query:     2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQ 56
             +NVV  LQEFW+ KQ + A   +  LV+YES+PS+ PP+V YVTLPGGSCFG+FQ
Sbjct:    28 LNVVSMLQEFWESKQQQKATFSSEGLVVYESMPSSGPPFVSYVTLPGGSCFGNFQ 82

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8UVV7	LIX1_CHICK	No assigned EC number	0.5714	0.4409	0.1992	yes	N/A
Q8IVB5	LIX1L_HUMAN	No assigned EC number	0.9090	0.4251	0.1602	yes	N/A
Q5PQQ7	LIX1L_RAT	No assigned EC number	0.9090	0.4251	0.1597	yes	N/A
Q8BQ89	LIX1L_MOUSE	No assigned EC number	0.9090	0.4251	0.1602	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PF14954	252	LIX1: Limb expression 1	100.0

>PF14954 LIX1: Limb expression 1

Probab=100.00  E-value=3.2e-77  Score=486.34  Aligned_cols=120  Identities=78%  Similarity=1.191  Sum_probs=117.3

Q ss_pred             ChhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCCCCcCCCcccc----------------------
Q psy17866          1 MVNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTL----------------------   58 (127)
Q Consensus         1 ~vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPGGSCFG~fq~C----------------------   58 (127)
                      .||||+||||||||||+||+++++|++|+|||+|||+|||||||||||||||||||+|                      
T Consensus        20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfNE   99 (252)
T PF14954_consen   20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFNE   99 (252)
T ss_pred             cchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHhc
Confidence            3899999999999999999999999999999999999999999999999999999999                      


Q ss_pred             ----------------------------------------------------ch--------------------------
Q psy17866         59 ----------------------------------------------------EV--------------------------   60 (127)
Q Consensus        59 ----------------------------------------------------EF--------------------------   60 (127)
                                                                          ||                          
T Consensus       100 hPsRrIt~eFi~ksv~eA~~s~~~~~~~~~~p~t~igaf~~mLesn~GrtMLEFQElMTVFQLLHWNGSLKAmRer~CSR  179 (252)
T PF14954_consen  100 HPSRRITDEFIEKSVQEAVASFSGKLEDADDPSTSIGAFRFMLESNKGRTMLEFQELMTVFQLLHWNGSLKAMRERQCSR  179 (252)
T ss_pred             CCcccccHHHHHHHHHHHHHhcCCCcccccCCcchHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcchHHHHHHccccH
Confidence                                                                33                          


Q ss_pred             -------------hhhhhhhHhhHHHhhhcCCcchHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHhhh
Q psy17866         61 -------------EVSRSQMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLAHTQI  120 (127)
Q Consensus        61 -------------d~mRsqMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~aGrELRF~KEKkdIL~LA~~q~  120 (127)
                                   ||||||||||||+|||++||+|++||++|++||++||++||||||||||||||+||++|+
T Consensus       180 QeViahYs~r~LD~~mRsqMALDWi~rE~~~pG~i~~EL~~A~~ELe~aR~aGrELRF~KEKkdIL~LA~sq~  252 (252)
T PF14954_consen  180 QEVIAHYSQRSLDDDMRSQMALDWIAREQESPGIISQELQVAERELEEARLAGRELRFYKEKKDILSLALSQL  252 (252)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHhhcC
Confidence                         999999999999999999999999999999999999999999999999999999999996

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	81.71

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=81.71  E-value=2.2  Score=26.63  Aligned_cols=35  Identities=29%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHHHHhhhccccCCCceEEEe----ecCCCCCCeEEEEecCCC
Q psy17866          2 VNVVEALQEFWQMKQTRGAELKNGALVIYE----SVPSASPPYVCYVTLPGG   49 (127)
Q Consensus         2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YE----svps~~pPyVcyVTLPGG   49 (127)
                      -|-+..||||.             .+..|+    +-|...|-|+|=|++.|-
T Consensus         4 knp~s~L~E~~-------------~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~   42 (71)
T 2b7v_A            4 KNPVMILNELR-------------PGLKYDFLSESGESHAKSFVMSVVVDGQ   42 (71)
T ss_dssp             SCHHHHHHHHC-------------CSCEEEEEECCCCTTTCCEEEEEECSSC
T ss_pred             CCHHHHHHHhC-------------CCCEEEEEEeECCCCCceEEEEEEECCE
Confidence            37789999991             344565    457777889999999774

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	86.72
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	86.52
d1st6a3	119	Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}	82.16

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=0.71  Score=29.08  Aligned_cols=68  Identities=19%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHHHhhhccccCCCceEEEeec----CCCCCCeEEEEecCCCCcCCCcccc---chhhhhhhhHhhHHHh
Q psy17866          2 VNVVEALQEFWQMKQTRGAELKNGALVIYESV----PSASPPYVCYVTLPGGSCFGSFQTL---EVEVSRSQMALDWIAR   74 (127)
Q Consensus         2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsv----ps~~pPyVcyVTLPGGSCFG~fq~C---EFd~mRsqMALDWi~r   74 (127)
                      .|-|..||||=|. .  +-      ++.|+.+    |...|-|+|-|++.| -.|+.=.--   +=+..=.++||++|..
T Consensus        13 ~~y~s~LqE~~Qk-~--~~------~p~y~~~~~~Gp~h~~~F~v~v~v~~-~~~~~g~G~sKK~Aeq~AA~~aL~~L~~   82 (90)
T d1qu6a1          13 GFFMEELNTYRQK-Q--GV------VLKYQELPNSGPPHDRRFTFQVIIDG-REFPEGEGRSKKEAKNAAAKLAVEILNK   82 (90)
T ss_dssp             CSHHHHHHHHHHH-H--TC------CCEEEEEESCBTTTBCCEEEEEESSS-SCCCEEECCSSHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHH-h--CC------CCcEEEEEeeCCCCCceEEEEEEECc-eeeeccCCCcHHHHHHHHHHHHHHHHHh
Confidence            3678999999763 2  21      3456554    555668999999865 444431111   2255556889999987


Q ss_pred             hhcCC
Q psy17866         75 EQENP   79 (127)
Q Consensus        75 E~~~p   79 (127)
                      +..++
T Consensus        83 ~~~~~   87 (90)
T d1qu6a1          83 EKKAV   87 (90)
T ss_dssp             CCSCC
T ss_pred             hCCCC
Confidence            76553

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.57  Score=29.43  Aligned_cols=69  Identities=12%  Similarity=0.011  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHhhhccccCCCceEEEeecCCCCCCeEEEEecCCCCcCCCcccc---chhhhhhhhHhhHHHhhhc
Q psy17866          2 VNVVEALQEFWQMKQTRGAELKNGALVIYESVPSASPPYVCYVTLPGGSCFGSFQTL---EVEVSRSQMALDWIAREQE   77 (127)
Q Consensus         2 vNVVeaLqeFWq~Kq~rga~~~~~~lV~YEsvps~~pPyVcyVTLPGGSCFG~fq~C---EFd~mRsqMALDWi~rE~~   77 (127)
                      .|.+..||||=|.+.   -..  . ..+.|+-|...|.|+|-|.+-|- .||.=.-=   +=+.+=.+.||++|..|+.
T Consensus        14 ~n~~s~L~E~~Qk~~---~~~--~-y~~~~~g~~h~~~F~~~v~i~g~-~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          14 GNYIGLINRIAQKKR---LTV--N-YEQCASGVHGPEGFHYKCKMGQK-EYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             CCCHHHHHHHHHHSC---CEE--E-EEEEEECSSSSSEEEEEEEEETT-BCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCHHHHHHHHHHhcC---CCc--c-eeeeccCCCCCCceEEEEEECCc-cccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            588999999988632   111  1 33457878878889999999544 33321100   2256667899999998773

>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: Vinculin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.16  E-value=0.92  Score=31.40  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=38.2

Q ss_pred             hhHhhHHHhhhcCCcchHHHHHHHHHHHHHHHhcccccccchhhHHHHHHH
Q psy17866         66 QMALDWIAREQENPGALGRELDQAERELETARLAGRELRFPKEKKDILMLA  116 (127)
Q Consensus        66 qMALDWi~rE~~~pG~i~~EL~~a~rELe~aR~aGrELRF~KEKkdIL~LA  116 (127)
                      ..|.+||..-.-.||-+++.-  -..=+++||+-+-.+ -+++|.+||-++
T Consensus        26 eqA~~WL~dP~~~~gg~Ge~A--iR~il~earkva~~~-~~~~r~~Il~~c   73 (119)
T d1st6a3          26 NQAKGWLRDPNAPPGDAGEQA--IRQILDEAGKAGELC-AGKERREILGTC   73 (119)
T ss_dssp             HHHHHHHHSTTSCSTTTTHHH--HHHHHHHHHHHHHTT-CSTTHHHHHHHH
T ss_pred             HHHHHHHHCcCCCCCCccHHH--HHHHHHHHHHHHHhC-CchhHHHHHHHH
Confidence            468999999998899887642  223578899888776 699999999886