Psyllid ID: psy17881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MDPRNASRTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPVNACEYKLV
Secondary Structure (PSIPRED)
cccccccccccccccccHHcccccccHHHHHHcccccccccccccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEccccccEEEEEc
Coil and Loop (DISEMBL)
mdprnasrtpsatkepmyrlryqspvnallkqshinprnasrtpsatkepmyrlryqspvnaceyklv
Flexible Loop (DISEMBL)
mdprnasrtpsatkepmyrlRYQSPVNAllkqshinprnasrtpsatkepmyrlryqspvnaceyklv
Low Complexity Region (SEG)
MDPRNASRTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPVNACEYKLV
Disordered region (IsUnstruct)
********************************************************************
Disordered Region (DISOPRED)
*********************Y**********************************************
Disordered Region (DISEMBL)
*************KEPMYRLRYQSPVNALLKQSHI***********TKEPMYRLRYQSPVNACEYKLV
Disordered Region (DISPRO)
**************EPMYRLRYQSPVN*********************EPMYRLRYQSPVNACEYKLV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPRNASRTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPVNACEYKLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
193656953	922	PREDICTED: actin-binding LIM protein 1-l	0.485	0.035	0.757	2e-06
328709991	921	PREDICTED: actin-binding LIM protein 1-l	0.485	0.035	0.757	2e-06
427782719	711	Putative actin-binding lim zn-finger pro	0.485	0.046	0.727	3e-06
158294174	830	AGAP005425-PA [Anopheles gambiae str. PE	0.485	0.039	0.727	3e-06
427782711	735	Putative actin-binding lim zn-finger pro	0.485	0.044	0.727	3e-06
242017898	785	ablim, putative [Pediculus humanus corpo	0.470	0.040	0.781	5e-06
237681213	768	AT12452p [Drosophila melanogaster]	0.485	0.042	0.666	1e-05
195113929	846	GI21937 [Drosophila mojavensis] gi|19391	0.485	0.039	0.666	1e-05
194767637	861	GF11572 [Drosophila ananassae] gi|190619	0.485	0.038	0.666	1e-05
16903148	765	DUNC-115s [Drosophila melanogaster]	0.485	0.043	0.666	1e-05

>gi|193656953|ref|XP_001949191.1| PREDICTED: actin-binding LIM protein 1-like [Acyrthosiphon pisum]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            K SHI+PRNASR PSA +EP YRLRYQSP+NA
Sbjct: 682 WKVSHIDPRNASRCPSAAREPTYRLRYQSPINA 714

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709991|ref|XP_003244131.1| PREDICTED: actin-binding LIM protein 1-like [Acyrthosiphon pisum]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            K SHI+PRNASR PSA +EP YRLRYQSP+NA
Sbjct: 682 WKVSHIDPRNASRCPSAAREPTYRLRYQSPINA 714

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782719|gb|JAA56811.1| Putative actin-binding lim zn-finger protein limatin involved in axon guidance [Rhipicephalus pulchellus]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            K +H++PRNASRTPSA+KEP YRLRY +PVNA
Sbjct: 469 WKMTHVDPRNASRTPSASKEPTYRLRYDNPVNA 501

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294174|ref|XP_315432.4| AGAP005425-PA [Anopheles gambiae str. PEST] gi|157015442|gb|EAA11937.4| AGAP005425-PA [Anopheles gambiae str. PEST]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 30/33 (90%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            KQ +++PRNASRTPSA+KEPMYR+RY+SPV A
Sbjct: 592 WKQENLDPRNASRTPSASKEPMYRMRYESPVGA 624

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782711|gb|JAA56807.1| Putative actin-binding lim zn-finger protein limatin involved in axon guidance [Rhipicephalus pulchellus]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            K +H++PRNASRTPSA+KEP YRLRY +PVNA
Sbjct: 493 WKMTHVDPRNASRTPSASKEPTYRLRYDNPVNA 525

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017898|ref|XP_002429421.1| ablim, putative [Pediculus humanus corporis] gi|212514347|gb|EEB16683.1| ablim, putative [Pediculus humanus corporis]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 27/32 (84%)

Query: 31  KQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
           K  H++PRNASR PSA KEP YRLRYQSPVNA
Sbjct: 550 KLQHLDPRNASRVPSANKEPAYRLRYQSPVNA 581

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237681213|gb|ACR10173.1| AT12452p [Drosophila melanogaster]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 31/33 (93%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct: 588 WKQNNLDPRNASRTPSASKEPLYKLRYESPIGA 620

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113929|ref|XP_002001520.1| GI21937 [Drosophila mojavensis] gi|193918114|gb|EDW16981.1| GI21937 [Drosophila mojavensis]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 31/33 (93%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct: 605 WKQNNLDPRNASRTPSASKEPLYKLRYESPIGA 637

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194767637|ref|XP_001965921.1| GF11572 [Drosophila ananassae] gi|190619764|gb|EDV35288.1| GF11572 [Drosophila ananassae]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 31/33 (93%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct: 621 WKQNNLDPRNASRTPSASKEPLYKLRYESPIGA 653

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16903148|gb|AAL30428.1|AF434684_1 DUNC-115s [Drosophila melanogaster]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 31/33 (93%)

Query: 30  LKQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
            KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct: 585 WKQNNLDPRNASRTPSASKEPLYKLRYESPIGA 617

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0260463	806	Unc-115b [Drosophila melanogas	0.470	0.039	0.687	4.9e-08
FB|FBgn0051352	844	Unc-115a [Drosophila melanogas	0.470	0.037	0.687	5.5e-08
WB|WBGene00006839	639	unc-115 [Caenorhabditis elegan	0.529	0.056	0.552	0.00059
UNIPROTKB|Q95QM5	639	unc-115 "Protein UNC-115, isof	0.529	0.056	0.552	0.00059

FB|FBgn0260463 Unc-115b [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
 Identities = 22/32 (68%), Positives = 31/32 (96%)

Query:    31 KQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
             KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct:   567 KQNNLDPRNASRTPSASKEPLYKLRYESPIGA 598

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0051352 Unc-115a [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
 Identities = 22/32 (68%), Positives = 31/32 (96%)

Query:    31 KQSHINPRNASRTPSATKEPMYRLRYQSPVNA 62
             KQ++++PRNASRTPSA+KEP+Y+LRY+SP+ A
Sbjct:   605 KQNNLDPRNASRTPSASKEPLYKLRYESPIGA 636

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0007411 "axon guidance" evidence=IMP

WB|WBGene00006839 unc-115 [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query:     2 DPRNASRTPSATKEPMYRLRYQSPVNALLKQSHIN-PR 38
             DPRNASRTPS  K P  + RY  P+NA   + H+N PR
Sbjct:   451 DPRNASRTPSGKKMPHLKFRYDVPINASPSR-HLNRPR 487

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q95QM5 unc-115 "Protein UNC-115, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query:     2 DPRNASRTPSATKEPMYRLRYQSPVNALLKQSHIN-PR 38
             DPRNASRTPS  K P  + RY  P+NA   + H+N PR
Sbjct:   451 DPRNASRTPSGKKMPHLKFRYDVPINASPSR-HLNRPR 487


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.125   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 23  0.46    28
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  409 (44 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.47u 0.08s 9.55t   Elapsed:  00:00:11
  Total cpu time:  9.47u 0.08s 9.55t   Elapsed:  00:00:11
  Start:  Thu Aug 15 10:53:25 2013   End:  Thu Aug 15 10:53:36 2013

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG1044|consensus	670		97.86
KOG1044|consensus	670		93.0

>KOG1044|consensus

Probab=97.86  E-value=9.2e-06  Score=67.83  Aligned_cols=58  Identities=28%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCCCCCCcceeeeccchhHH-----------------------------------HHhhhcCCCCCCCCCCC
Q psy17881          1 MDPRNASRTPSATKEPMYRLRYQSPVNA-----------------------------------LLKQSHINPRNASRTPS   45 (68)
Q Consensus         1 ~dprnasrtpsa~kep~~r~ry~~p~~A-----------------------------------S~k~~~~DPRnASRtPs   45 (68)
                      ++|++|+++++..+.+++..+|..|+++                                   +|+.-+.||||++|++.
T Consensus       461 ~~pdpas~~~~e~~~w~~~ps~~V~~~~~~~R~~~R~~eql~Kl~sgigq~ilKeeme~~r~~~~~~p~~sp~nssr~~~  540 (670)
T KOG1044|consen  461 QAPDPASTPEIETDHWPGKPSFAVPGPEMKRRSLGRQEEQLMKLNSGLGQLILKEEMEKARSSLLASPYDSPRNSSRHIP  540 (670)
T ss_pred             cCCCCCCCCcccccCCCCCCcccccCchhhhhhccchhhhhhhccchhhHHHHHHHhhhhhchhhccccCCccccccccC
Confidence            6899999999999999999999999543                                   46667789999999999


Q ss_pred             CCCCCcceecccC
Q psy17881         46 ATKEPMYRLRYQS   58 (68)
Q Consensus        46 A~kEP~~rlRY~s   58 (68)
                      |.||+.|.++|+.
T Consensus       541 aske~~~~l~~~n  553 (670)
T KOG1044|consen  541 ASKEASLPLYGEN  553 (670)
T ss_pred             ccccccccccccC
Confidence            9999999999974

>KOG1044|consensus

Probab=93.00  E-value=0.064  Score=45.49  Aligned_cols=47  Identities=11%  Similarity=-0.007  Sum_probs=43.5

Q ss_pred             ccchhHHHHhhhcCCCCCCCCCCCCCCCCcceecccCCCccccccCC
Q psy17881         22 YQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPVNACEYKLV   68 (68)
Q Consensus        22 y~~p~~AS~k~~~~DPRnASRtPsA~kEP~~rlRY~sPv~Aspsr~~   68 (68)
                      |+-++-.+.-..+++|++|+++++..+.++++.+|..|+++++.|++
T Consensus       448 ~eDi~k~sk~p~~~~pdpas~~~~e~~~w~~~ps~~V~~~~~~~R~~  494 (670)
T KOG1044|consen  448 SEDIIKFSKFPAAQAPDPASTPEIETDHWPGKPSFAVPGPEMKRRSL  494 (670)
T ss_pred             ccchhhhhcCCcccCCCCCCCCcccccCCCCCCcccccCchhhhhhc
Confidence            77788888889999999999999999999999999999999999853

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00