Psyllid ID: psy17909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMVVGMVTDTTITITTP
cccccEEEcccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccc
cccEccEEccEEccccccEccccccEEEEccEEccEEcccccccHHHHHHHHHccccccccccEEEEcEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEHHHHHHccccEEEEEEEEEccccEEEEEcc
MALGDTLFVAgagkffegdgafvtsplsgdtlfvagagkffegdgaemHHNLNVKlaklpnetkvfcgheytvnnlyfskhvepnnTRIAEKLKWAIEKrerkeptvpstiGMVMVMGTVMGMVMVVGMVTDttitittp
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLyfskhvepnntRIAEKLKWAiekrerkeptvpstigMVMVMGTVMGMVMVVGMVTDTTITITTP
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPStigmvmvmgtvmgmvmvvgmvtdttitittP
****DTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEK******TVPSTIGMVMVMGTVMGMVMVVGMVTDTTITI***
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMVVGMVTDT*******
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMVVGMVTDTTITITTP
MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMVVGMVTDTTITITTP
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
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MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMVVGMVTDTTITITTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query140 2.2.26 [Sep-21-2011]
Q3B7M2308 Hydroxyacylglutathione hy yes N/A 0.65 0.295 0.565 8e-26
Q6P963303 Hydroxyacylglutathione hy yes N/A 0.614 0.283 0.604 2e-25
O35952309 Hydroxyacylglutathione hy yes N/A 0.65 0.294 0.565 4e-25
Q99KB8309 Hydroxyacylglutathione hy yes N/A 0.65 0.294 0.565 5e-25
Q5ZI23310 Hydroxyacylglutathione hy yes N/A 0.65 0.293 0.555 1e-24
Q4R6C1308 Hydroxyacylglutathione hy N/A N/A 0.65 0.295 0.545 3e-24
Q16775308 Hydroxyacylglutathione hy yes N/A 0.65 0.295 0.545 4e-24
B4F6K2313 Hydroxyacylglutathione hy yes N/A 0.65 0.290 0.535 6e-24
O24496258 Hydroxyacylglutathione hy yes N/A 0.607 0.329 0.576 6e-24
Q28333280 Hydroxyacylglutathione hy no N/A 0.65 0.325 0.515 4e-22
>sp|Q3B7M2|GLO2_BOVIN Hydroxyacylglutathione hydrolase, mitochondrial OS=Bos taurus GN=HAGH PE=2 SV=3 Back     alignment and function desciption
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 68/99 (68%), Gaps = 8/99 (8%)

Query: 22  FVTSP--------LSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTV 73
           FVT P         +GDTLFVAG GKF+EG   EM+  L   L +LP +T+V+CGHEYT+
Sbjct: 166 FVTKPNSPEPPAVFTGDTLFVAGCGKFYEGTADEMYKALLEVLGRLPADTRVYCGHEYTI 225

Query: 74  NNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIG 112
           NNL F++HVEP+NT + EKL WA EK    EPTVPSTI 
Sbjct: 226 NNLKFARHVEPDNTAVREKLAWAKEKYSIGEPTVPSTIA 264
Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 6
>sp|Q6P963|GLO2_DANRE Hydroxyacylglutathione hydrolase, mitochondrial OS=Danio rerio GN=hagh PE=2 SV=2 Back     alignment and function description
>sp|O35952|GLO2_RAT Hydroxyacylglutathione hydrolase, mitochondrial OS=Rattus norvegicus GN=Hagh PE=1 SV=2 Back     alignment and function description
>sp|Q99KB8|GLO2_MOUSE Hydroxyacylglutathione hydrolase, mitochondrial OS=Mus musculus GN=Hagh PE=2 SV=2 Back     alignment and function description
>sp|Q5ZI23|GLO2_CHICK Hydroxyacylglutathione hydrolase, mitochondrial OS=Gallus gallus GN=HAGH PE=2 SV=1 Back     alignment and function description
>sp|Q4R6C1|GLO2_MACFA Hydroxyacylglutathione hydrolase, mitochondrial OS=Macaca fascicularis GN=HAGH PE=2 SV=2 Back     alignment and function description
>sp|Q16775|GLO2_HUMAN Hydroxyacylglutathione hydrolase, mitochondrial OS=Homo sapiens GN=HAGH PE=1 SV=2 Back     alignment and function description
>sp|B4F6K2|GLO2_XENTR Hydroxyacylglutathione hydrolase, mitochondrial OS=Xenopus tropicalis GN=hagh PE=2 SV=1 Back     alignment and function description
>sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q28333|GLO2_CALJA Hydroxyacylglutathione hydrolase, mitochondrial (Fragment) OS=Callithrix jacchus GN=HAGH PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
324515767 256 Hydroxyacylglutathione hydrolase [Ascari 0.614 0.335 0.604 1e-25
351711305 260 Hydroxyacylglutathione hydrolase, mitoch 0.65 0.35 0.585 6e-25
327280119 307 PREDICTED: hydroxyacylglutathione hydrol 0.65 0.296 0.585 1e-24
426254175 308 PREDICTED: hydroxyacylglutathione hydrol 0.65 0.295 0.585 1e-24
346471231 258 hypothetical protein [Amblyomma maculatu 0.614 0.333 0.604 1e-24
225710232 269 Hydroxyacylglutathione hydrolase [Caligu 0.614 0.319 0.613 2e-24
440913415 286 Hydroxyacylglutathione hydrolase, mitoch 0.65 0.318 0.575 2e-24
449666967177 PREDICTED: hydroxyacylglutathione hydrol 0.692 0.548 0.540 3e-24
410985549 385 PREDICTED: hydroxyacylglutathione hydrol 0.642 0.233 0.581 3e-24
427787595 258 Putative hydroxyacylglutathione hydrolas 0.614 0.333 0.604 3e-24
>gi|324515767|gb|ADY46309.1| Hydroxyacylglutathione hydrolase [Ascaris suum] Back     alignment and taxonomy information
 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 27  LSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNN 86
            +GDTLF+ G G+FFEG+  EMH  LN KLA LP++T+V+CGHEYTV NL F+  VEP+N
Sbjct: 130 FTGDTLFIGGCGRFFEGNATEMHSALNEKLASLPDDTEVYCGHEYTVTNLRFAHSVEPSN 189

Query: 87  TRIAEKLKWAIEKRERKEPTVPSTIG 112
             +++KL W+  K+ER EPTVPSTIG
Sbjct: 190 EEVSKKLAWSKAKQERHEPTVPSTIG 215

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota
>gi|351711305|gb|EHB14224.1| Hydroxyacylglutathione hydrolase, mitochondrial [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|327280119|ref|XP_003224801.1| PREDICTED: hydroxyacylglutathione hydrolase, mitochondrial-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|426254175|ref|XP_004020757.1| PREDICTED: hydroxyacylglutathione hydrolase, mitochondrial [Ovis aries] Back     alignment and taxonomy information
>gi|346471231|gb|AEO35460.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|225710232|gb|ACO10962.1| Hydroxyacylglutathione hydrolase [Caligus rogercresseyi] Back     alignment and taxonomy information
>gi|440913415|gb|ELR62865.1| Hydroxyacylglutathione hydrolase, mitochondrial, partial [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|449666967|ref|XP_002167040.2| PREDICTED: hydroxyacylglutathione hydrolase, mitochondrial-like [Hydra magnipapillata] Back     alignment and taxonomy information
>gi|410985549|ref|XP_003999083.1| PREDICTED: hydroxyacylglutathione hydrolase, mitochondrial [Felis catus] Back     alignment and taxonomy information
>gi|427787595|gb|JAA59249.1| Putative hydroxyacylglutathione hydrolase mitochondrial [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
ZFIN|ZDB-GENE-030131-8921303 hagh "hydroxyacylglutathione h 0.585 0.270 0.621 1.1e-23
RGD|2779309 Hagh "hydroxyacyl glutathione 0.585 0.265 0.634 1.4e-23
UNIPROTKB|O35952309 Hagh "Hydroxyacylglutathione h 0.585 0.265 0.634 1.4e-23
UNIPROTKB|Q3B7M2308 HAGH "Hydroxyacylglutathione h 0.585 0.266 0.609 1.8e-23
MGI|MGI:95745309 Hagh "hydroxyacyl glutathione 0.585 0.265 0.634 2.9e-23
UNIPROTKB|G1K303286 HAGH "Hydroxyacylglutathione h 0.585 0.286 0.609 1e-22
UNIPROTKB|Q5ZI23310 HAGH "Hydroxyacylglutathione h 0.585 0.264 0.609 1e-22
UNIPROTKB|H3BPK3239 HAGH "Hydroxyacylglutathione h 0.585 0.343 0.609 2.1e-22
UNIPROTKB|H3BPQ4258 HAGH "Hydroxyacylglutathione h 0.585 0.317 0.609 2.1e-22
UNIPROTKB|Q16775308 HAGH "Hydroxyacylglutathione h 0.585 0.266 0.609 2.1e-22
ZFIN|ZDB-GENE-030131-8921 hagh "hydroxyacylglutathione hydrolase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query:    28 SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
             +GDTLFVAG GKFFEG   EM+  L   L +LP ET+V+CGHEYT+NNL F++HVEPNN 
Sbjct:   175 TGDTLFVAGCGKFFEGTADEMYKALIEVLGRLPPETRVYCGHEYTINNLKFARHVEPNNE 234

Query:    88 RIAEKLKWAIEKRERKEPTVPS 109
              I  KL WA EK +  EPT+PS
Sbjct:   235 VIRTKLAWAKEKYDNGEPTIPS 256
GO:0004416 "hydroxyacylglutathione hydrolase activity" evidence=IEA
GO:0006750 "glutathione biosynthetic process" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005759 "mitochondrial matrix" evidence=IEA
RGD|2779 Hagh "hydroxyacyl glutathione hydrolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O35952 Hagh "Hydroxyacylglutathione hydrolase, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3B7M2 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:95745 Hagh "hydroxyacyl glutathione hydrolase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G1K303 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZI23 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H3BPK3 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BPQ4 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q16775 HAGH "Hydroxyacylglutathione hydrolase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O35952GLO2_RAT3, ., 1, ., 2, ., 60.56560.650.2944yesN/A
Q99KB8GLO2_MOUSE3, ., 1, ., 2, ., 60.56560.650.2944yesN/A
Q3B7M2GLO2_BOVIN3, ., 1, ., 2, ., 60.56560.650.2954yesN/A
Q16775GLO2_HUMAN3, ., 1, ., 2, ., 60.54540.650.2954yesN/A
Q5ZI23GLO2_CHICK3, ., 1, ., 2, ., 60.55550.650.2935yesN/A
Q6P963GLO2_DANRE3, ., 1, ., 2, ., 60.60460.61420.2838yesN/A
O24496GLO2C_ARATH3, ., 1, ., 2, ., 60.57640.60710.3294yesN/A
Q46Z82GLO2_CUPPJ3, ., 1, ., 2, ., 60.50570.61420.3233yesN/A
A4G7G5GLO2_HERAR3, ., 1, ., 2, ., 60.51160.60710.3281yesN/A
B4F6K2GLO2_XENTR3, ., 1, ., 2, ., 60.53530.650.2907yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
PLN02469258 PLN02469, PLN02469, hydroxyacylglutathione hydrola 9e-37
TIGR03413248 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrol 1e-36
PLN02398329 PLN02398, PLN02398, hydroxyacylglutathione hydrola 2e-22
PRK10241251 PRK10241, PRK10241, hydroxyacylglutathione hydrola 2e-15
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase Back     alignment and domain information 
 Score =  126 bits (317), Expect = 9e-37
 Identities = 48/94 (51%), Positives = 65/94 (69%)

Query: 28  SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
           +GDTLF+AG GKFFEG   +M+ +L V L  LP  T+V+CGHEYTV NL F+  VEP+N 
Sbjct: 133 TGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVEPDNE 192

Query: 88  RIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVM 121
           ++ +KL+WA ++R+   PTVPSTI   +     M
Sbjct: 193 KLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFM 226

Length = 258
>gnl|CDD|234201 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|215223 PLN02398, PLN02398, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 140
PLN02469258 hydroxyacylglutathione hydrolase 100.0
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 100.0
PLN02398329 hydroxyacylglutathione hydrolase 100.0
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 100.0
KOG0813|consensus265 100.0
PLN02962251 hydroxyacylglutathione hydrolase 99.87
KOG0814|consensus237 99.73
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.83
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 98.21
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 98.09
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 97.98
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 97.92
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 97.1
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 94.46
KOG4736|consensus302 89.55
PRK11539755 ComEC family competence protein; Provisional 82.62
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-38  Score=254.69  Aligned_cols=123  Identities=40%  Similarity=0.651  Sum_probs=112.3

Q ss_pred             eEEEEEeCCe----EEEEeccc-CCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909          3 LGDTLFVAGA----GKFFEGDG-AFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY   77 (140)
Q Consensus         3 ~~~vi~tPGH----~~~~~~~~-~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~   77 (140)
                      .++|++||||    ++|+..+. .+.++|||||+||.++|||+++|++++|++||++++..||++++|||||||+..|++
T Consensus       103 ~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~nl~  182 (258)
T PLN02469        103 NILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLK  182 (258)
T ss_pred             EEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhHHH
Confidence            5899999999    56654321 124699999999999999999999999999998778889999999999999999999


Q ss_pred             cccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceecc
Q psy17909         78 FSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM  125 (140)
Q Consensus        78 fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~  125 (140)
                      ||++++|+|+.+++++++++++|+++.||+||||++||++|||||+..
T Consensus       183 Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~  230 (258)
T PLN02469        183 FALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDL  230 (258)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCC
Confidence            999999999999999999999999999999999999999999999853

>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG0813|consensus Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG0814|consensus Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>KOG4736|consensus Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
1qh3_A260 Human Glyoxalase Ii With Cacodylate And Acetate Ion 7e-24
1xm8_A254 X-Ray Structure Of Glyoxalase Ii From Arabidopsis T 4e-14
2qed_A258 Crystal Structure Of Salmonella Thyphimurium Lt2 Gl 2e-12
2p18_A311 Crystal Structure Of The Leishmania Infantum Glyoxa 5e-06
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions Present In The Active Site Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 59/82 (71%)
Query: 28  SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
           +GDTLFVAG GKF+EG   EM   L   L +LP +T+V+CGHEYT+NNL F++HVEP N 
Sbjct: 132 TGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNA 191
Query: 88  RIAEKLKWAIEKRERKEPTVPS 109
            I EKL WA EK    EPTVPS
Sbjct: 192 AIREKLAWAKEKYSIGEPTVPS 213
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350 Length = 254 Back     alignment and structure
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2 Glyoxalase Ii Length = 258 Back     alignment and structure
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 6e-45
1xm8_A254 Glyoxalase II; structural genomics, protein struct 5e-43
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 7e-43
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 4e-39
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 4e-09
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 2e-08
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 1e-07
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 2e-06
4efz_A298 Metallo-beta-lactamase family protein; structural 8e-05
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 6e-04
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 Back     alignment and structure
 Score =  146 bits (371), Expect = 6e-45
 Identities = 53/99 (53%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 15  FFEGDGAFVTSPL-SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTV 73
           F    G      + +GDTLFVAG GKF+EG   EM   L   L +LP +T+V+CGHEYT+
Sbjct: 118 FVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTI 177

Query: 74  NNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIG 112
           NNL F++HVEP N  I EKL WA EK    EPTVPST+ 
Sbjct: 178 NNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLA 216
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Length = 254 Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Length = 258 Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Length = 207 Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Length = 245 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Length = 298 Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.97
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.95
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.95
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.94
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.79
4efz_A298 Metallo-beta-lactamase family protein; structural 99.78
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.71
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.7
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.69
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.66
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.46
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 99.4
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.31
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.3
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.25
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.23
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.22
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.2
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.18
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.17
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.16
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.15
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.14
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.14
2p97_A201 Hypothetical protein; putative metal-dependent hyd 99.13
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.06
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.99
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 98.98
3esh_A280 Protein similar to metal-dependent hydrolase; stru 98.95
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 98.91
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 98.88
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 98.75
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 98.73
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.64
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 98.63
3adr_A261 Putative uncharacterized protein ST1585; quorum se 98.55
1ztc_A221 Hypothetical protein TM0894; structural genomics, 98.53
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 98.53
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.47
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 97.8
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 98.4
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.36
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 98.36
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 98.25
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 88.96
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
Probab=99.97  E-value=1.2e-31  Score=212.21  Aligned_cols=124  Identities=44%  Similarity=0.684  Sum_probs=112.2

Q ss_pred             eeEEEEEeCCe----EEEEe-ccc-CCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccc
Q psy17909          2 ALGDTLFVAGA----GKFFE-GDG-AFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNN   75 (140)
Q Consensus         2 ~~~~vi~tPGH----~~~~~-~~~-~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~n   75 (140)
                      ..+++++||||    ++|+. ... ...+++||||++|.+++|++++|+.++|++||++++..||++++||||||+..+|
T Consensus       100 ~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l~~~~~g~~~~~~~~~~~~Sl~~~l~~l~~~~~v~pgHg~~~~~  179 (260)
T 1qh5_A          100 LNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINN  179 (260)
T ss_dssp             EEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEETTEECCCTTCCHHHHHHHHHTTTTTSCTTCEEEESBCCHHHH
T ss_pred             EEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHHcCCCCeEEEcCCCchhcc
Confidence            36899999999    56654 211 2468999999999999999999999999999976799999999999999999999


Q ss_pred             cccccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceecc
Q psy17909         76 LYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM  125 (140)
Q Consensus        76 l~fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~  125 (140)
                      ++|+.+++|+|+.++++++|++++++++.+|+||||++||++|||+|+..
T Consensus       180 ~~f~~~v~p~~~~l~~~~~~~~~~~~~~~~t~psti~~E~~~Npfl~~~~  229 (260)
T 1qh5_A          180 LKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVRE  229 (260)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHTCCCCCEEHHHHHHHCTTTTTTS
T ss_pred             HHHHHhhCCCcHHHHHHHHHHHHHHhcCCCcCCcCHHHHHhcCCcccCCC
Confidence            99999999999999999999999999999999999999999999999854
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 140
d2qeda1251 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglut 4e-17
d1xm8a_254 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathio 8e-17
d1qh5a_260 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathio 1e-15
d1jjta_220 d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomo 2e-07
d2aioa1266 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xa 4e-06
d2q0ia1298 d.157.1.14 (A:1-298) Quinolone signal response pro 6e-06
d2gmna1264 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br 2e-04
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Length = 251 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Salmonella typhimurium [TaxId: 90371]

 Score = 72.6 bits (177), Expect = 4e-17
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 26  PLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPN 85
              GDTLF  G G+ FEG  ++M+ +L  K+  LP++T + C HEYT+ N+ F+  + P+
Sbjct: 123 LFCGDTLFSGGCGRLFEGTPSQMYQSLM-KINSLPDDTLICCAHEYTLANIKFALSILPH 181

Query: 86  NTRIAEKLKWAIEKRERKEPTVPSTIG 112
           ++ I E  +   E R +K+ T+P  + 
Sbjct: 182 DSFINEYYRKVKELRVKKQMTLPVILK 208
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 254 Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Length = 220 Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 99.39
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.25
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.14
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.05
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.02
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.98
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.92
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.88
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 98.63
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.56
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 98.44
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 98.42
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.29
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 98.28
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.26
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 97.99
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 97.92
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 89.5
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6e-39  Score=252.64  Aligned_cols=118  Identities=28%  Similarity=0.451  Sum_probs=111.9

Q ss_pred             eeEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909          2 ALGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY   77 (140)
Q Consensus         2 ~~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~   77 (140)
                      ..++++|||||    +||+.     ++.|||||+||.|||||+++|++++|++||+ +|++||++|+|||||+|+..|++
T Consensus       100 ~~~~vi~TPGHT~g~v~~~~-----~~~lftGDtLF~gg~Gr~~~g~~~~~~~sl~-kl~~Lp~~t~v~pgH~y~~~n~~  173 (251)
T d2qeda1         100 EKFTLFATPGHTLGHVCYFS-----RPYLFCGDTLFSGGCGRLFEGTPSQMYQSLM-KINSLPDDTLICCAHEYTLANIK  173 (251)
T ss_dssp             EEEEEEECCSSSTTCEEEEE-----TTEEEEETTEETTEECCCSSSCHHHHHHHHH-HHHTSCTTCEEEESBCCHHHHHH
T ss_pred             ceEEEEECCCCCCCcEEEec-----cceeeecCceeeCCCCcCCCCCHHHHHHHHH-HHHhCCccceecccCccccCChh
Confidence            46899999999    67775     4799999999999999999999999999997 69999999999999999999999


Q ss_pred             cccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceecc
Q psy17909         78 FSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM  125 (140)
Q Consensus        78 fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~  125 (140)
                      ||++++|+|+.++++++++++++.++.+++||||++||++|||||+..
T Consensus       174 f~~~~~p~n~~~~~~~~~v~~~~~~~~~t~Pstl~~E~~~Npflr~~~  221 (251)
T d2qeda1         174 FALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTED  221 (251)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTC
T ss_pred             heeeeccccHHHHHHHHHHHHHHhccCCCCCccHHHHHHhCHhhcCCC
Confidence            999999999999999999999999999999999999999999999864
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure