Psyllid ID: psy17913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGGGGGGGYKRKNTDDYGSDGTRAKSGRWDQSSSGGYGGAAKGYQSRGYRGGHNDRY
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEHEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssqcfigtayafftpgnarHAKQLVDVLIEANQSVTPALSEMSQMSAMGlynknsgfsrfnvsggggggggykrkntddygsdgtraksgrwdqsssggyggaakgyqsrgyrgghndry
Flexible Loop (DISEMBL)
MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSggggggggykrknTDDYGsdgtraksgrwdqsssggyggaakgyqsrgyrgghndry
Low Complexity Region (SEG)
MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSggggggggYKRKNTDDYGSDGTRAKSGRWDqsssggyggaakgyqsRGYRGGHNDRY
Disordered region (IsUnstruct)
****CFIGTAYAFFTPGNARHAKQLVDVLIEA*****************************************************************************************
Disordered Region (DISOPRED)
****CFI*TAYAFFTPGNARHAKQLVDVLIEANQSVTPALS********************************************************************************
Disordered Region (DISEMBL)
MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGGGGGGGYKRKNTDDYGSDGTRAKSGRWDQSSSGGYGGAAKGYQSRGYRGGHNDRY
Disordered Region (DISPRO)
**SQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS**************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGGGGGGGYKRKNTDDYGSDGTRAKSGRWDQSSSGGYGGAAKGYQSRGYRGGHNDRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q501J6	650	Probable ATP-dependent RN	no	N/A	0.297	0.055	0.555	1e-06
Q92841	729	Probable ATP-dependent RN	yes	N/A	0.297	0.049	0.555	1e-06
P19109	719	ATP-dependent RNA helicas	no	N/A	0.330	0.055	0.575	3e-06
P24782	550	ATP-dependent RNA helicas	yes	N/A	0.338	0.074	0.487	2e-05
Q9C718	501	DEAD-box ATP-dependent RN	yes	N/A	0.338	0.081	0.536	2e-05
P17844	614	Probable ATP-dependent RN	no	N/A	0.314	0.061	0.473	4e-05
A5A6J2	614	Probable ATP-dependent RN	no	N/A	0.314	0.061	0.473	4e-05
Q4R6M5	614	Probable ATP-dependent RN	N/A	N/A	0.314	0.061	0.473	4e-05
Q5R4I9	614	Probable ATP-dependent RN	no	N/A	0.314	0.061	0.473	4e-05
Q61656	614	Probable ATP-dependent RN	no	N/A	0.314	0.061	0.473	4e-05

>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
           GTAY FFTPGN + A++L+ VL EANQ++ P L ++
Sbjct: 437 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472

RNA-dependent ATPase activity. Involved in transcriptional regulation. Transcriptional coactivator for estrogen receptor ESR1. Increases ESR1 AF-1 domain-mediated transactivation (By similarity). Synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and probably involved in skeletal muscle differentiation.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
           GTAY FFTPGN + A++L+ VL EANQ++ P L ++
Sbjct: 516 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551

RNA-dependent ATPase activity. Involved in transcriptional regulation. Transcriptional coactivator for estrogen receptor ESR1. Increases ESR1 AF-1 domain-mediated transactivation. Synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and probably involved in skeletal muscle differentiation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
           GT++AFFT  NA+ AK LVDVL EANQ + PAL  +++ S
Sbjct: 628 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 667

Involved in RNA interference (RNAi); double-stranded RNA induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys messenger RNAs homologous to the silencing trigger.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dbp2 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA 48
           GTAY +FT  NA+ A++LV +L EA Q + P L EM++ S+
Sbjct: 467 GTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSS 507

ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA 48
           GTAY FFT  NAR AK+L ++L EA Q V+P L+ M + +A
Sbjct: 442 GTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRSTA 482

ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
           GTAY FFTP N +    L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
           GTAY FFTP N +    L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1.

Pan troglodytes (taxid: 9598)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
           GTAY FFTP N +    L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
           GTAY FFTP N +    L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
           GTAY FFTP N +    L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
427781447	681	Putative atp-dependent rna helicase [Rhi	0.603	0.107	0.475	5e-08
427779853	686	Putative atp-dependent rna helicase [Rhi	0.603	0.106	0.475	5e-08
307191879	627	Probable ATP-dependent RNA helicase DDX5	0.595	0.114	0.479	1e-07
322796814	1201	hypothetical protein SINV_01003 [Solenop	0.553	0.055	0.492	2e-07
193666978	666	PREDICTED: probable ATP-dependent RNA he	0.644	0.117	0.437	4e-07
427788853	744	Putative atp-dependent rna helicase [Rhi	0.479	0.077	0.465	5e-07
307173398	639	Probable ATP-dependent RNA helicase DDX5	0.495	0.093	0.524	5e-07
241573363	431	ATP-dependent RNA helicase, putative [Ix	0.429	0.120	0.441	2e-06
307191878	465	Probable ATP-dependent RNA helicase DDX5	0.504	0.131	0.428	2e-06
282158103	549	ATP-dependent RNA helicase p62 [Triboliu	0.305	0.067	0.675	3e-06

>gi|427781447|gb|JAA56175.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAY FFTPGN++ A++L+ VL EANQ V P L EM +MS    Y    G +R+  SGGG
Sbjct: 434 GTAYTFFTPGNSKQAQELISVLKEANQVVNPKLFEMFEMSRS--YGGRGGRNRWRTSGGG 491

Query: 68  GGGGGYKRKNTDDYGSDGTR 87
           G     +R + DD    G R
Sbjct: 492 G-----RRNDYDDDNRHGGR 506

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427779853|gb|JAA55378.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAY FFTPGN++ A++L+ VL EANQ V P L EM +MS    Y    G +R+  SGGG
Sbjct: 439 GTAYTFFTPGNSKQAQELISVLKEANQVVNPKLFEMFEMSRS--YGGRGGRNRWRTSGGG 496

Query: 68  GGGGGYKRKNTDDYGSDGTR 87
           G     +R + DD    G R
Sbjct: 497 G-----RRNDYDDDNRHGGR 511

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAYAFFT  N +HA  L++VL EA Q+V P LSEM++M+  G +   +G  RF  S G 
Sbjct: 470 GTAYAFFTSHNMKHAGDLIEVLREAGQNVNPRLSEMAEMAKAGNFGGRNG-KRFGASSGI 528

Query: 68  GGGGGYKRKNTDD 80
           GG  G  R+ + D
Sbjct: 529 GGERGNIRRGSSD 541

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAYAFFT  N +HA  L++VL EA Q+V P LSEM++M+  G +   +G  RF   GG 
Sbjct: 457 GTAYAFFTTHNMKHAGDLIEVLREAGQNVNPRLSEMAEMAKAGNFGGRNG-KRF---GGS 512

Query: 68  GGGGGYKRKNT 78
            GG G +R N+
Sbjct: 513 SGGNGAERTNS 523

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Acyrthosiphon pisum]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTA+ F TP NAR AK L+ VL EA Q V P L E+++M+A G++ K    +R    GG 
Sbjct: 467 GTAFTFVTPSNARQAKDLISVLQEAKQVVNPKLFELAEMAAAGVFGKMDRTNRSRDRGGQ 526

Query: 68  G--GGGGYKRKNTDDYGSDG 85
              G G + R +  +YGS G
Sbjct: 527 NNRGRGNHDRGSRGNYGSGG 546

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788853|gb|JAA59878.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSG 65
           GTAY FFTP N + AK+L+ VL EANQ+V P L EM+ ++  G ++      RF   G
Sbjct: 467 GTAYTFFTPNNMKQAKELIAVLKEANQAVNPKLYEMANLARSGAFSGGRNIRRFRAPG 524

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAYAFFT  N +HA  L++VL EA Q+V P LSEM++M+  G ++   G  RF  SGG 
Sbjct: 483 GTAYAFFTSHNMKHAGDLIEVLREAGQNVNPRLSEMAEMAKAGNFS-GRGAKRFGASGGN 541

Query: 68  G 68
           G
Sbjct: 542 G 542

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241573363|ref|XP_002402985.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215502109|gb|EEC11603.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 16/68 (23%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAY FFTP N++ A +L+ VL EANQ V P L EM +MS                 G G
Sbjct: 336 GTAYTFFTPHNSKQANELISVLKEANQVVNPKLYEMHEMS----------------RGYG 379

Query: 68  GGGGGYKR 75
           G GG ++R
Sbjct: 380 GRGGEWRR 387

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191878|gb|EFN75297.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           GTAYAFFTPGNA  A  L+ VL EA Q V P L E+S         +N G  +  ++GGG
Sbjct: 372 GTAYAFFTPGNAHKASDLIQVLEEAKQVVNPKLYELS---------RNPGIYKSGITGGG 422

Query: 68  GGGGGYKRKN 77
            G   + + +
Sbjct: 423 YGAKSFPQNS 432

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
           GT+YAFFTP N R AK LV VL EANQ++ P LSEM+
Sbjct: 460 GTSYAFFTPSNFRQAKDLVSVLKEANQAINPRLSEMA 496

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0003261	719	Rm62 "Rm62" [Drosophila melano	0.421	0.070	0.5	6.9e-07
UNIPROTKB|E9PT29	651	Ddx17 "Protein Ddx17" [Rattus	0.471	0.087	0.421	2.1e-06
UNIPROTKB|E1C2R8	496	DDX17 "Uncharacterized protein	0.462	0.112	0.438	2.3e-06
UNIPROTKB|H3BLZ8	731	DDX17 "Probable ATP-dependent	0.471	0.077	0.421	2.4e-06
UNIPROTKB|F1PID8	736	DDX17 "Uncharacterized protein	0.471	0.077	0.421	2.4e-06
UNIPROTKB|F1SKQ0	736	DDX17 "Uncharacterized protein	0.471	0.077	0.421	2.4e-06
POMBASE|SPBP8B7.16c	550	dbp2 "ATP-dependent RNA helica	0.677	0.149	0.329	3.5e-06
FB|FBgn0035720	818	CG10077 [Drosophila melanogast	0.388	0.057	0.5	5e-06
UNIPROTKB|A7E307	650	DDX17 "Uncharacterized protein	0.454	0.084	0.421	5.6e-06
UNIPROTKB|E2RJ60	650	DDX17 "Uncharacterized protein	0.454	0.084	0.421	5.6e-06

FB|FBgn0003261 Rm62 "Rm62" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRF 61
             GT++AFFT  NA+ AK LVDVL EANQ + PAL  +++ S    Y+   G SR+
Sbjct:   628 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSR---YDGGGGRSRY 678

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0016246 "RNA interference" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC;IDA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0005700 "polytene chromosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E9PT29 Ddx17 "Protein Ddx17" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   436 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRYRTT 492

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|E1C2R8 DDX17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  S
Sbjct:   435 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGG-GGGGGGRSRYRTS 490

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

UNIPROTKB|H3BLZ8 DDX17 "Probable ATP-dependent RNA helicase DDX17" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   516 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRYRTT 572

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

UNIPROTKB|F1PID8 DDX17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   518 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRYRTT 574

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SKQ0 DDX17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   518 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRYRTT 574

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

POMBASE|SPBP8B7.16c dbp2 "ATP-dependent RNA helicase Dbp2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 29/88 (32%), Positives = 42/88 (47%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYN--KNSGFSRFNVSX 65
             GTAY +FT  NA+ A++LV +L EA Q + P L EM++ S+ G     +  G+ R     
Sbjct:   467 GTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSSGGRGGNYRRGGYGR----G 522

Query:    66 XXXXXXXYKRKNTDDYGSDGTRAKSGRW 93
                    Y  +N    GS+       RW
Sbjct:   523 GFRRGGGYGNRNRGFTGSNSAPLARSRW 550

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

FB|FBgn0035720 CG10077 [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
 Identities = 25/50 (50%), Positives = 30/50 (60%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSG 57
             GTAY  FT  NA  A  L+ VL EANQ++ P L  M+ M+  G YNK  G
Sbjct:   502 GTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMA-MN--GGYNKRGG 548

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|A7E307 DDX17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   437 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGG--GGGGGRSRYRTT 491

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RJ60 DDX17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVS 64
             GTAY FFTPGN + A++L+ VL EANQ++ P L ++      G      G SR+  +
Sbjct:   437 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGG--GGGGGRSRYRTT 491

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
PTZ00110	545	PTZ00110, PTZ00110, helicase; Provisional	2e-07

>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
           G +Y F TP   R A+ LV VL EA Q V P L ++S        N+ S  +     GG 
Sbjct: 475 GASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLS--------NERSNGTERRRWGGY 526

Query: 68  GGGGG 72
           G    
Sbjct: 527 GRFSN 531

Length = 545

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG0336|consensus	629		98.97
KOG0335|consensus	482		98.92
KOG0339|consensus	731		98.88
PTZ00110	545	helicase; Provisional	98.79
KOG0331|consensus	519		98.56
KOG0341|consensus	610		98.42
PLN00206	518	DEAD-box ATP-dependent RNA helicase; Provisional	98.29
KOG0334|consensus	997		97.88
KOG0344|consensus	593		97.79
KOG0333|consensus	673		97.73
KOG0328|consensus	400		95.99
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	95.68
COG0513	513	SrmB Superfamily II DNA and RNA helicases [DNA rep	95.11
KOG0327|consensus	397		94.48
PRK04837	423	ATP-dependent RNA helicase RhlB; Provisional	93.73
PRK01297	475	ATP-dependent RNA helicase RhlB; Provisional	93.21
PF14475	41	Mso1_Sec1_bdg: Sec1-binding region of Mso1	92.38
PTZ00424	401	helicase 45; Provisional	92.07
KOG0326|consensus	459		90.78
PRK11634	629	ATP-dependent RNA helicase DeaD; Provisional	90.75
PRK04537	572	ATP-dependent RNA helicase RhlB; Provisional	90.2
KOG0340|consensus	442		90.05
PRK11776	460	ATP-dependent RNA helicase DbpA; Provisional	87.16
KOG0329|consensus	387		86.17
KOG0330|consensus	476		85.63
KOG0338|consensus	691		85.48
PRK11192	434	ATP-dependent RNA helicase SrmB; Provisional	83.37
KOG0332|consensus	477		83.33
KOG0346|consensus	569		83.26

>KOG0336|consensus

Probab=98.97  E-value=5.2e-10  Score=97.23  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS   47 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~   47 (121)
                      +|||++|++|||||.+|..+|.+||++|++++|+||++|..||+..
T Consensus       557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery  602 (629)
T KOG0336|consen  557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY  602 (629)
T ss_pred             ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999864

>KOG0335|consensus

Probab=98.92  E-value=1.5e-09  Score=94.49  Aligned_cols=48  Identities=40%  Similarity=0.439  Sum_probs=44.9

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM   49 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~   49 (121)
                      +|+|+.|.||+||+.++..++++|+++|+|++|+||+||.+|+.+...
T Consensus       429 GR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~~~  476 (482)
T KOG0335|consen  429 GRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSELSREREL  476 (482)
T ss_pred             ccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHhhhhhccc
Confidence            799999999999999999999999999999999999999998877543

>KOG0339|consensus

Probab=98.88  E-value=4.3e-09  Score=93.22  Aligned_cols=49  Identities=29%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             CCCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913          1 MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM   49 (121)
Q Consensus         1 ~~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~   49 (121)
                      |+|||.+|+|+|++|++|.++|-+||++|+.++|.||++|.+||...++
T Consensus       559 tgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~  607 (731)
T KOG0339|consen  559 TGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSW  607 (731)
T ss_pred             cccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhh
Confidence            6899999999999999999999999999999999999999999986543

>PTZ00110 helicase; Provisional

Probab=98.79  E-value=8.7e-09  Score=89.65  Aligned_cols=49  Identities=37%  Similarity=0.531  Sum_probs=45.5

Q ss_pred             CCCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913          1 MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM   49 (121)
Q Consensus         1 ~~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~   49 (121)
                      .+|+|++|+||+||+++|..++++|+++|++++|+||+||++|+.....
T Consensus       468 tGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~  516 (545)
T PTZ00110        468 TGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSN  516 (545)
T ss_pred             cccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcC
Confidence            3688889999999999999999999999999999999999999987654

>KOG0331|consensus

Probab=98.56  E-value=7.3e-08  Score=84.72  Aligned_cols=48  Identities=42%  Similarity=0.553  Sum_probs=45.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM   49 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~   49 (121)
                      +||+++|+|+||||+.|..++++|+++|+|++|+||+.|.+++.....
T Consensus       433 GRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~  480 (519)
T KOG0331|consen  433 GRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGS  480 (519)
T ss_pred             ccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhccc
Confidence            688889999999999999999999999999999999999999987654

>KOG0341|consensus

Probab=98.42  E-value=2.3e-07  Score=80.63  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHHHHHHh
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSEMSQM   46 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~~~a~~   46 (121)
                      +|+|++|+|+||+|.+ +..++-||..||.|++|+|||.|.+++.+
T Consensus       513 GRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~  558 (610)
T KOG0341|consen  513 GRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP  558 (610)
T ss_pred             CCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence            7999999999999987 56789999999999999999999999854

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional

Probab=98.29  E-value=8.9e-07  Score=76.48  Aligned_cols=46  Identities=20%  Similarity=0.223  Sum_probs=42.1

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS   47 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~   47 (121)
                      +|+|++|+||+|++++|..++.+|+++|++++|+||+||+++..-.
T Consensus       460 GR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~~  505 (518)
T PLN00206        460 SRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRYLG  505 (518)
T ss_pred             ccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChhhh
Confidence            5777789999999999999999999999999999999999988543

>KOG0334|consensus

Probab=97.88  E-value=2.2e-05  Score=73.44  Aligned_cols=45  Identities=27%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHh
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQM   46 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~   46 (121)
                      +|||++|.|+||++|.+..++.||++.|..+.|.+|..|+.|+..
T Consensus       705 gragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~  749 (997)
T KOG0334|consen  705 GRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSER  749 (997)
T ss_pred             ccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHH
Confidence            689999999999999999999999999999999999999999865

>KOG0344|consensus

Probab=97.79  E-value=2.9e-05  Score=69.24  Aligned_cols=44  Identities=14%  Similarity=0.271  Sum_probs=42.4

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ   45 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~   45 (121)
                      +|||+.|.||||||+.|....+-|+++++.+++|||.|+..|..
T Consensus       480 gRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k  523 (593)
T KOG0344|consen  480 GRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKK  523 (593)
T ss_pred             CCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhh
Confidence            79999999999999999999999999999999999999999885

>KOG0333|consensus

Probab=97.73  E-value=2.8e-05  Score=69.43  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=40.3

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHH-cCCCCChHHHHHHHh
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIE-ANQSVTPALSEMSQM   46 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~e-a~QeVP~~L~~~a~~   46 (121)
                      +|||+.|+||||+|+.|..+.+||+++|.+ .+..+|++|....+.
T Consensus       609 gRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a  654 (673)
T KOG0333|consen  609 GRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA  654 (673)
T ss_pred             cccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence            799999999999999999999999998884 577899999877653

>KOG0328|consensus

Probab=95.99  E-value=0.0069  Score=51.36  Aligned_cols=42  Identities=10%  Similarity=0.131  Sum_probs=39.3

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|.|++|+||.|++.+|.++++|+.+.+..+..|+|..+.++
T Consensus       358 GRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~  399 (400)
T KOG0328|consen  358 GRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL  399 (400)
T ss_pred             cccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence            688999999999999999999999999999999999987664

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=95.68  E-value=0.037  Score=47.05  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=27.4

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEAN   33 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~   33 (121)
                      +|++++|.||+|++++|..++++|.++|....
T Consensus       337 GR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~  368 (456)
T PRK10590        337 GRAAATGEALSLVCVDEHKLLRDIEKLLKKEI  368 (456)
T ss_pred             ccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence            57778899999999999999999998876543

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]

Probab=95.11  E-value=0.025  Score=49.39  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=34.1

Q ss_pred             CCCCCCceeEEEeeCCC-ChhHHHHHHHHHHHc---CCCCChHHHH
Q psy17913          1 MSSQCFIGTAYAFFTPG-NARHAKQLVDVLIEA---NQSVTPALSE   42 (121)
Q Consensus         1 ~~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea---~QeVP~~L~~   42 (121)
                      .+|||++|+||+|+++. +...+++|.+.+...   .+++|.+...
T Consensus       364 TgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~  409 (513)
T COG0513         364 TGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE  409 (513)
T ss_pred             cccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence            37999999999999986 889999999988665   4577765443

>KOG0327|consensus

Probab=94.48  E-value=0.02  Score=49.40  Aligned_cols=42  Identities=14%  Similarity=0.204  Sum_probs=37.7

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      ||+|++|+||+|+++.|.+.++++.+.+...-.|+|....++
T Consensus       355 gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l  396 (397)
T KOG0327|consen  355 GRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL  396 (397)
T ss_pred             cccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence            789999999999999999999999999988888999766543

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional

Probab=93.73  E-value=0.055  Score=45.21  Aligned_cols=32  Identities=6%  Similarity=-0.056  Sum_probs=26.5

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEAN   33 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~   33 (121)
                      +|+|++|+||||+++++....+.|.+.+....
T Consensus       347 gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~  378 (423)
T PRK04837        347 GRAGASGHSISLACEEYALNLPAIETYIGHSI  378 (423)
T ss_pred             cCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence            67888999999999998888888877765554

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional

Probab=93.21  E-value=0.089  Score=44.81  Aligned_cols=41  Identities=15%  Similarity=0.165  Sum_probs=33.1

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcC-CCCCh-HHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEAN-QSVTP-ALSE   42 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~-QeVP~-~L~~   42 (121)
                      +|+|+.|++|+|++++|..++++|.++|.... +++|+ +|.+
T Consensus       427 GR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T PRK01297        427 GRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK  469 (475)
T ss_pred             CCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence            56677899999999999999999999987664 67654 6655

>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1

Probab=92.38  E-value=0.11  Score=31.64  Aligned_cols=25  Identities=12%  Similarity=0.092  Sum_probs=22.2

Q ss_pred             CCChhHHHHHHHHHHHcCCCCChHH
Q psy17913         16 PGNARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus        16 ~~n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +++.-+.+.|++...+..|..|+||
T Consensus        17 eddT~v~r~l~~yY~~k~~~~P~WL   41 (41)
T PF14475_consen   17 EDDTHVHRVLRKYYTEKGRPFPGWL   41 (41)
T ss_pred             cchhHHHHHHHHHHHHcCCCCCCcC
Confidence            4566789999999999999999997

>PTZ00424 helicase 45; Provisional

Probab=92.07  E-value=0.12  Score=42.24  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=31.8

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +|.+++|.||+|+++++...++.|.+.+...-+++|+..
T Consensus       359 gR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~  397 (401)
T PTZ00424        359 GRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEV  397 (401)
T ss_pred             ccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcch
Confidence            455678999999999999999999888887777777654

>KOG0326|consensus

Probab=90.78  E-value=0.19  Score=43.46  Aligned_cols=39  Identities=10%  Similarity=0.078  Sum_probs=35.7

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +|.|..|+||+++|.+|...+.++.+-|-...++||+.+
T Consensus       414 GRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i  452 (459)
T KOG0326|consen  414 GRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI  452 (459)
T ss_pred             ccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence            678889999999999999999999999999999999754

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional

Probab=90.75  E-value=0.2  Score=45.00  Aligned_cols=31  Identities=13%  Similarity=0.109  Sum_probs=25.0

Q ss_pred             CCCCCCceeEEEeeCCCChhHHHHHHHHHHH
Q psy17913          1 MSSQCFIGTAYAFFTPGNARHAKQLVDVLIE   31 (121)
Q Consensus         1 ~~RaG~~G~AiTFft~~n~~~a~dLv~lL~e   31 (121)
                      .+|+|++|+||+|+++.+..+++.|.+.++.
T Consensus       336 tGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~  366 (629)
T PRK11634        336 TGRAGRAGRALLFVENRERRLLRNIERTMKL  366 (629)
T ss_pred             ccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence            3688899999999999888888877766543

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional

Probab=90.20  E-value=0.23  Score=43.97  Aligned_cols=31  Identities=13%  Similarity=0.023  Sum_probs=26.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEA   32 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea   32 (121)
                      +|+|++|+||||+++.+...+++|.+.|...
T Consensus       349 GR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~  379 (572)
T PRK04537        349 ARLGEEGDAISFACERYAMSLPDIEAYIEQK  379 (572)
T ss_pred             ccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence            5778889999999999888888888876544

>KOG0340|consensus

Probab=90.05  E-value=0.31  Score=42.39  Aligned_cols=29  Identities=10%  Similarity=0.066  Sum_probs=25.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLI   30 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~   30 (121)
                      -|||+.|.||||||+.|..++..|.+.+-
T Consensus       346 ARAGR~G~aiSivt~rDv~l~~aiE~~ig  374 (442)
T KOG0340|consen  346 ARAGRKGMAISIVTQRDVELLQAIEEEIG  374 (442)
T ss_pred             hcccCCcceEEEechhhHHHHHHHHHHHh
Confidence            48999999999999999988888776554

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional

Probab=87.16  E-value=0.56  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQ   34 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~Q   34 (121)
                      +|+|+.|.||+|++++|...+++|.++|...-+
T Consensus       334 GR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~  366 (460)
T PRK11776        334 GRAGSKGLALSLVAPEEMQRANAIEDYLGRKLN  366 (460)
T ss_pred             cCCCCcceEEEEEchhHHHHHHHHHHHhCCCCc
Confidence            577778999999999998888888887765433

>KOG0329|consensus

Probab=86.17  E-value=0.34  Score=40.96  Aligned_cols=39  Identities=13%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +|.|.+|+||||+..+ |..++.++-+-++...+|+|+++
T Consensus       340 grfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei  379 (387)
T KOG0329|consen  340 GRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI  379 (387)
T ss_pred             hccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence            6788899999999764 67788888887777788888873

>KOG0330|consensus

Probab=85.63  E-value=1.4  Score=38.92  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=30.4

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQS   35 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~Qe   35 (121)
                      .|||+.|+||||+|.-|..+...|..+|...-.+
T Consensus       392 aRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~  425 (476)
T KOG0330|consen  392 ARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE  425 (476)
T ss_pred             cccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence            6899999999999999999999999888877666

>KOG0338|consensus

Probab=85.48  E-value=0.8  Score=41.71  Aligned_cols=29  Identities=7%  Similarity=0.133  Sum_probs=26.3

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLI   30 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~   30 (121)
                      -|||+.|.||||+.++|..+++++++.-.
T Consensus       518 ARAGRaGrsVtlvgE~dRkllK~iik~~~  546 (691)
T KOG0338|consen  518 ARAGRAGRSVTLVGESDRKLLKEIIKSST  546 (691)
T ss_pred             hhcccCcceEEEeccccHHHHHHHHhhhh
Confidence            48999999999999999999999998753

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional

Probab=83.37  E-value=1  Score=37.58  Aligned_cols=31  Identities=13%  Similarity=0.061  Sum_probs=26.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEA   32 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea   32 (121)
                      +|+|++|+||+|+++.|..++.+|.+.|.+.
T Consensus       337 gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~  367 (434)
T PRK11192        337 GRAGRKGTAISLVEAHDHLLLGKIERYIEEP  367 (434)
T ss_pred             ccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence            5778889999999999998888888776543

>KOG0332|consensus

Probab=83.33  E-value=1.8  Score=38.16  Aligned_cols=43  Identities=9%  Similarity=0.012  Sum_probs=31.4

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHc-CCCCChHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEA-NQSVTPALSEMS   44 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea-~QeVP~~L~~~a   44 (121)
                      +|.|++|+||.|+..+ +.+++..|.+.+... .+-+|+.++++-
T Consensus       428 GRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~e  472 (477)
T KOG0332|consen  428 GRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDELE  472 (477)
T ss_pred             ccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHHH
Confidence            7899999999999876 567777787777544 445566555553

>KOG0346|consensus

Probab=83.26  E-value=0.88  Score=40.73  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEA   32 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea   32 (121)
                      .|++++|+|+||+.|++.....+|.++|++.
T Consensus       395 aRg~n~GtalSfv~P~e~~g~~~le~~~~d~  425 (569)
T KOG0346|consen  395 ARGNNKGTALSFVSPKEEFGKESLESILKDE  425 (569)
T ss_pred             ccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence            5889999999999999887778888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	4e-12
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	2e-11
2p6n_A	191	ATP-dependent RNA helicase DDX41; DEAD, structural	2e-09
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	5e-08

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
           G A +FF   N    K L+D+L+EA Q V   L  M+   
Sbjct: 144 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH 183

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 8   GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMG 50
           G A +FF   N    K L+D+L+EA Q V   L  M+      
Sbjct: 374 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYK 416

>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 8   GTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSEM 43
           G A  F     +      L  +L+EA Q V P L  +
Sbjct: 152 GIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 188

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 8   GTAYAFFTP-GNARHAKQLVDVLIEANQSVTPAL 40
           G A +FF P  +   A  LV +L  + Q+V   L
Sbjct: 398 GRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	98.54
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	98.36
2p6n_A	191	ATP-dependent RNA helicase DDX41; DEAD, structural	98.24
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	98.17
1fuk_A	165	Eukaryotic initiation factor 4A; helicase, DEAD-bo	96.55
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	96.35
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	94.94
2rb4_A	175	ATP-dependent RNA helicase DDX25; rossmann fold, s	94.87
1t5i_A	172	C_terminal domain of A probable ATP-dependent RNA	94.79
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	94.64
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	93.84
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	92.16
3eaq_A	212	Heat resistant RNA dependent ATPase; DEAD box RNA	91.87
3i32_A	300	Heat resistant RNA dependent ATPase; RNA helicase,	89.22
2yjt_D	170	ATP-dependent RNA helicase SRMB, regulator of ribo	87.83
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	87.7
1yks_A	440	Genome polyprotein [contains: flavivirin protease	87.04
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	85.7
2wp7_A	168	PPPDE peptidase domain-containing protein 2; hydro	83.63
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	83.23
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	81.63

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=98.54  E-value=6.1e-08  Score=79.03  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CCCCCceeEEEeeCC-CChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTP-GNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~-~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|+|++|.||+||++ ++..++++|+++|++++|+||+||++|
T Consensus       392 gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~  434 (434)
T 2db3_A          392 GRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC  434 (434)
T ss_dssp             SCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred             ccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence            688899999999995 588999999999999999999999875

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=98.36  E-value=4.8e-07  Score=66.44  Aligned_cols=46  Identities=33%  Similarity=0.422  Sum_probs=41.3

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS   47 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~   47 (121)
                      +|.|++|.||+|+++.+..++++|+++|+...|+||+||.+||.+.
T Consensus       138 ~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~~~  183 (185)
T 2jgn_A          138 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH  183 (185)
T ss_dssp             CCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC--
T ss_pred             CCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHc
Confidence            4667789999999999999999999999999999999999998753

>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}

Probab=98.24  E-value=9.1e-07  Score=65.50  Aligned_cols=44  Identities=25%  Similarity=0.325  Sum_probs=37.4

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSEMSQ   45 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~~~a~   45 (121)
                      +|+|++|.||+|+++. +..++++|.++|+++.|+||+||.+|++
T Consensus       146 gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~  190 (191)
T 2p6n_A          146 GCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC  190 (191)
T ss_dssp             CC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred             ccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence            5667789999999986 7889999999999999999999998864

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=98.17  E-value=2e-06  Score=67.57  Aligned_cols=48  Identities=31%  Similarity=0.398  Sum_probs=42.3

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM   49 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~   49 (121)
                      +|.|++|.|++|++++|..++++|+++|+++.++||+||++|+.++..
T Consensus       368 gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  415 (417)
T 2i4i_A          368 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY  415 (417)
T ss_dssp             CC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCSCC
T ss_pred             ccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhhhc
Confidence            466677999999999999999999999999999999999999987653

>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19

Probab=96.55  E-value=0.0003  Score=49.82  Aligned_cols=42  Identities=12%  Similarity=0.150  Sum_probs=32.9

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|+|++|.+++|+++++...+++|.++|....+++|.+|.+|
T Consensus       122 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (165)
T 1fuk_A          122 GRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL  163 (165)
T ss_dssp             C-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTT
T ss_pred             ccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHhh
Confidence            355667999999999999999999999999999999877654

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=96.35  E-value=0.00094  Score=52.05  Aligned_cols=42  Identities=10%  Similarity=0.126  Sum_probs=29.2

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|+|++|.|++|+++++...+++|.++|....+++|.+|.++
T Consensus       372 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  413 (414)
T 3eiq_A          372 GRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL  413 (414)
T ss_dssp             -------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred             cCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence            355667999999999999999999999999999999998876

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=94.94  E-value=0.0064  Score=47.31  Aligned_cols=41  Identities=7%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSE   42 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~   42 (121)
                      +|.|++|.+|+|++++|...+++|.+.|...-+++|.++.+
T Consensus       350 gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  390 (400)
T 1s2m_A          350 GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK  390 (400)
T ss_dssp             SCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred             cCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence            46677899999999999999999999888888888887654

>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}

Probab=94.87  E-value=0.0096  Score=42.26  Aligned_cols=37  Identities=8%  Similarity=0.065  Sum_probs=28.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCCh
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTP   38 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~   38 (121)
                      +|+|+.|.||+|+++.+...+++|.+.|...-+++|.
T Consensus       132 gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  168 (175)
T 2rb4_A          132 GRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNA  168 (175)
T ss_dssp             ----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECS
T ss_pred             ccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCC
Confidence            4667789999999999988889998888776666664

>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19

Probab=94.79  E-value=0.007  Score=43.28  Aligned_cols=41  Identities=12%  Similarity=0.093  Sum_probs=31.2

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSE   42 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~~   42 (121)
                      +|.|++|.+++|+++. +..++++|.+.|...-+++|.+|..
T Consensus       123 ~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (172)
T 1t5i_A          123 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI  164 (172)
T ss_dssp             TGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred             ccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence            5778899999999986 5678899999998888889988654

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=94.64  E-value=0.0043  Score=48.54  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALS   41 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~   41 (121)
                      +|.|++|++|+|++++|..++++|.+.+...-.++|..+.
T Consensus       368 gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  407 (410)
T 2j0s_A          368 GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA  407 (410)
T ss_dssp             SGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred             cCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchh
Confidence            4667889999999999999999999999988888886543

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=93.84  E-value=0.011  Score=45.56  Aligned_cols=42  Identities=12%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|.|++|.+++|+++++...+++|.+.+...-.++|..+.++
T Consensus       351 ~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  392 (394)
T 1fuu_A          351 GRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL  392 (394)
T ss_dssp             ------------------------------------------
T ss_pred             cCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence            455677999999999999999999999999888999887765

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=92.16  E-value=0.034  Score=42.76  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=33.2

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALS   41 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~   41 (121)
                      +|.|++|.+++|+++. +..++++|.+.|....+++|.++.
T Consensus       342 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (391)
T 1xti_A          342 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID  382 (391)
T ss_dssp             SSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred             cCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence            4667789999999986 567889999999888889998743

>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A

Probab=91.87  E-value=0.075  Score=39.13  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=26.9

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSV   36 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeV   36 (121)
                      +|+|+.|.+++|+++.+..+++.|.+.++..-+++
T Consensus       123 gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~  157 (212)
T 3eaq_A          123 GRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRV  157 (212)
T ss_dssp             CCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEEC
T ss_pred             CCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeec
Confidence            56677899999999999999999988887654443

>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}

Probab=89.22  E-value=0.21  Score=39.40  Aligned_cols=31  Identities=13%  Similarity=0.138  Sum_probs=21.1

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHc
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEA   32 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea   32 (121)
                      +|+|+.|.||+|+++.+..+++.|.+.+...
T Consensus       120 gR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~  150 (300)
T 3i32_A          120 GRAGRGGRVVLLYGPRERRDVEALERAVGRR  150 (300)
T ss_dssp             C-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred             CcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence            5667789999999999988888777766543

>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}

Probab=87.83  E-value=0.096  Score=36.88  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=27.1

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCC
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQS   35 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~Qe   35 (121)
                      +|+|++|.+++|+++.+..++++|.+.|...-++
T Consensus       122 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (170)
T 2yjt_D          122 ARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA  155 (170)
Confidence            4667789999999999998989988877655443

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=87.70  E-value=0.24  Score=38.10  Aligned_cols=42  Identities=10%  Similarity=0.080  Sum_probs=28.8

Q ss_pred             CCCCCceeEEEeeCCCC-hhHHHHHHHHHHHcCCCCCh-HHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGN-ARHAKQLVDVLIEANQSVTP-ALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n-~~~a~dLv~lL~ea~QeVP~-~L~~~   43 (121)
                      +|+++.|.+++|+++++ ..+++.|.+.|.....+++. +++++
T Consensus       364 gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  407 (412)
T 3fht_A          364 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI  407 (412)
T ss_dssp             SCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred             cCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence            45667899999999864 78888999988877777764 34443

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=87.04  E-value=0.5  Score=38.51  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CCC-CCceeEEEee---CCCChhHHHHHHHHHHHcCCCCChHH
Q psy17913          2 SSQ-CFIGTAYAFF---TPGNARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus         2 ~Ra-G~~G~AiTFf---t~~n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +|+ +++|.||+|+   ++.+..+++.|.+.|..+++++|.++
T Consensus       283 GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~  325 (440)
T 1yks_A          283 GRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM  325 (440)
T ss_dssp             SCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred             CCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence            454 4578999996   78888999999999988888887543

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=85.70  E-value=0.54  Score=40.51  Aligned_cols=39  Identities=13%  Similarity=0.104  Sum_probs=30.9

Q ss_pred             CCCCC-ceeEEEeeC---CCChhHHHHHHHHHHHcCCCCChHH
Q psy17913          2 SSQCF-IGTAYAFFT---PGNARHAKQLVDVLIEANQSVTPAL   40 (121)
Q Consensus         2 ~RaG~-~G~AiTFft---~~n~~~a~dLv~lL~ea~QeVP~~L   40 (121)
                      +|++. +|.||+|++   ++|..+++.|.+.|+-.+.++|..+
T Consensus       462 GR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~  504 (618)
T 2whx_A          462 GRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI  504 (618)
T ss_dssp             SCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred             CCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence            45543 789999998   7888999999998888777776543

>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A

Probab=83.63  E-value=0.36  Score=36.04  Aligned_cols=38  Identities=13%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             ceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHh
Q psy17913          7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQM   46 (121)
Q Consensus         7 ~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~   46 (121)
                      ++.+|.+|+.+.-.+..+|++.|.  ...||.|+.+||.+
T Consensus        97 ~g~~Y~Ll~~NCNhFs~~l~~~L~--gk~IP~wInrl~~~  134 (168)
T 2wp7_A           97 RGEAYNLFEHNCNTFSNEVAQFLT--GRKIPSYITDLPSE  134 (168)
T ss_dssp             SGGGCBTTTBSHHHHHHHHHHHHH--SCCCCHHHHTHHHH
T ss_pred             CcccCchhhhccchhHHHHHHHhc--CCCCcHHHHHHHHH
Confidence            345566666666677888888886  66999999999975

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=83.23  E-value=0.23  Score=40.01  Aligned_cols=37  Identities=5%  Similarity=-0.002  Sum_probs=0.0

Q ss_pred             CCCCCceeEEEeeCCCC-hhHHHHHHHHHHHcCCCCCh
Q psy17913          2 SSQCFIGTAYAFFTPGN-ARHAKQLVDVLIEANQSVTP   38 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n-~~~a~dLv~lL~ea~QeVP~   38 (121)
                      +|+++.|.||+|+++.+ ..+++.|.+.|...-++++.
T Consensus       431 gR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~  468 (479)
T 3fmp_B          431 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT  468 (479)
T ss_dssp             --------------------------------------
T ss_pred             ccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence            45667899999999764 77888888888877777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1fuka_	162	Initiation factor 4a {Baker's yeast (Saccharomyces	97.65
d1s2ma2	171	Putative ATP-dependent RNA helicase DHH1 {Baker's	97.33
d2j0sa2	168	Probable ATP-dependent RNA helicase DDX48 {Human (	97.28
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.43
d1oywa3	200	RecQ helicase domain {Escherichia coli [TaxId: 562	92.22

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=2.5e-06  Score=60.41  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             CCCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHH
Q psy17913          1 MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS   44 (121)
Q Consensus         1 ~~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a   44 (121)
                      ++|+|++|+||+|+|++|...+++|.+.++...++||.+|+++.
T Consensus       118 ~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~~~l~  161 (162)
T d1fuka_         118 GGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL  161 (162)
T ss_dssp             CC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTTT
T ss_pred             cccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHHHHhh
Confidence            36778889999999999999999999999999999999887763

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=2.1e-05  Score=55.43  Aligned_cols=43  Identities=7%  Similarity=0.035  Sum_probs=38.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS   44 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a   44 (121)
                      +|.|++|+||+|+++.|..++++|.+.|....++||.+|.+..
T Consensus       124 gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~~d~~~  166 (171)
T d1s2ma2         124 GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSL  166 (171)
T ss_dssp             SCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGGG
T ss_pred             ccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcccchhh
Confidence            5778899999999999999999999999988899999876643

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=1.3e-05  Score=56.92  Aligned_cols=42  Identities=10%  Similarity=0.131  Sum_probs=37.0

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM   43 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~   43 (121)
                      +|+|++|+||+|+++.|..++++|.+.|+...++||..+.++
T Consensus       126 gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~~~~di  167 (168)
T d2j0sa2         126 GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL  167 (168)
T ss_dssp             SGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTT
T ss_pred             cccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCcChHHh
Confidence            577888999999999999999999999998889999876654

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00031  Score=49.31  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=31.5

Q ss_pred             CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHH
Q psy17913          2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALS   41 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~   41 (121)
                      +|.|++|.||+|+++. +.+++.+|.+.|+...+|||++|.
T Consensus       119 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~~  159 (168)
T d1t5ia_         119 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID  159 (168)
T ss_dssp             TGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred             ccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchhh
Confidence            5778899999999986 577888999999888899999874

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.057  Score=38.52  Aligned_cols=25  Identities=12%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             CCCCCceeEEEeeCCCChhHHHHHH
Q psy17913          2 SSQCFIGTAYAFFTPGNARHAKQLV   26 (121)
Q Consensus         2 ~RaG~~G~AiTFft~~n~~~a~dLv   26 (121)
                      +|+|+.|.||+|++++|..+++.|+
T Consensus       122 gR~g~~g~ai~~~~~~d~~~l~~~i  146 (200)
T d1oywa3         122 GRDGLPAEAMLFYDPADMAWLRRCL  146 (200)
T ss_dssp             CTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred             hcCCCCceEEEecCHHHHHHHHhhh
Confidence            6778899999999998877666554