Psyllid ID: psy17915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
cccEEEEccccccccccccHHHHHHHHcccccccccccccccccccEEEEEEccccccccEEEEEccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccEEEEEccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHHHcccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccc
ccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccHEEEEEEccccccccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccHEEEEEEccccccccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEcccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcEccccccccc
MREIVHIQvgqcgnqtGVKFWEEISQEhglnemgryegtsdlQLERIQVYYNeaqggyiprailvdlepgtmdavrsgpygkmfrpdnflhgqsgaannwakghyTEGVELVDAVMDLTRREaencdcmqgfqvthslgggtgsvishqnfrsanfkskifgktKTKMREIVHIQvgqcgnqtGVKFWEEISQEhglnemgryegtsdlQLERIQVYYNeaqggyiprailvdlepgtmdavrsgpygkmfrpdnflhgqsgaannwakghyTEGVELVDAVMDLTRREaencdcmqgfqvthslgggtgsgmGTLLLTKIREEypdrminafsvvpspkvsdtvvepYNAILSLSHlietsdetfcidneALYDICVRSlklnspsyrdlNHLVSATmcgittclrfpgqlnADLRKLAvnmvpfprlhffmsgnaplv
mreivhiqvgqcgnqtgVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQvgqcgnqtgVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVthslgggtgsGMGTLLLTKIREEYPDRMINAFsvvpspkvsDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLhffmsgnaplv
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVthslgggtgsgmgtllltKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
***IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFM*******
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGT*DLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
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MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
P09244 444 Tubulin beta-7 chain OS=G yes N/A 0.618 0.612 0.794 1e-124
Q6GLE7 444 Tubulin beta chain OS=Xen yes N/A 0.618 0.612 0.794 1e-124
Q91575 444 Tubulin beta chain OS=Xen N/A N/A 0.618 0.612 0.794 1e-124
P69897 444 Tubulin beta-5 chain OS=R yes N/A 0.618 0.612 0.794 1e-124
Q5R943 444 Tubulin beta chain OS=Pon yes N/A 0.618 0.612 0.794 1e-124
Q767L7 444 Tubulin beta chain OS=Sus yes N/A 0.618 0.612 0.794 1e-124
Q7JJU6 444 Tubulin beta chain OS=Pan no N/A 0.618 0.612 0.794 1e-124
P99024 444 Tubulin beta-5 chain OS=M yes N/A 0.618 0.612 0.794 1e-124
P69895 444 Tubulin beta chain OS=Mac yes N/A 0.618 0.612 0.794 1e-124
P07437 444 Tubulin beta chain OS=Hom yes N/A 0.618 0.612 0.794 1e-124
>sp|P09244|TBB7_CHICK Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1 Back     alignment and function desciption
 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/273 (79%), Positives = 245/273 (89%), Gaps = 1/273 (0%)

Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQL+RI VYYNEA GG Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
           R+EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
           RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 273
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Gallus gallus (taxid: 9031)
>sp|Q6GLE7|TBB5_XENTR Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1 Back     alignment and function description
>sp|Q91575|TBB5_XENLA Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1 Back     alignment and function description
>sp|P69897|TBB5_RAT Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1 Back     alignment and function description
>sp|Q5R943|TBB5_PONAB Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV=1 Back     alignment and function description
>sp|Q767L7|TBB5_PIG Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1 Back     alignment and function description
>sp|Q7JJU6|TBB5_PANTR Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3 SV=1 Back     alignment and function description
>sp|P99024|TBB5_MOUSE Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1 Back     alignment and function description
>sp|P69895|TBB5_MACMU Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1 Back     alignment and function description
>sp|P07437|TBB5_HUMAN Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
383861412 577 PREDICTED: tubulin beta-4 chain-like [Me 0.902 0.688 0.588 1e-135
156389348442 predicted protein [Nematostella vectensi 0.611 0.608 0.770 1e-126
74223737444 unnamed protein product [Mus musculus] 0.618 0.612 0.791 1e-125
117422544448 beta-tubulin [Blastocladiella emersonii] 0.618 0.607 0.791 1e-124
328773156447 Alpha-Beta tubulin [Batrachochytrium den 0.618 0.608 0.787 1e-124
219553143447 beta-tubulin [Rhizophagus clarus] 0.618 0.608 0.787 1e-124
328768901447 Alpha-Beta tubulin [Batrachochytrium den 0.618 0.608 0.787 1e-124
219553141447 beta-tubulin [Gigaspora gigantea] 0.618 0.608 0.791 1e-124
313222850444 unnamed protein product [Oikopleura dioi 0.620 0.614 0.781 1e-124
346468265445 hypothetical protein [Amblyomma maculatu 0.620 0.613 0.794 1e-124
>gi|383861412|ref|XP_003706180.1| PREDICTED: tubulin beta-4 chain-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/450 (58%), Positives = 307/450 (68%), Gaps = 53/450 (11%)

Query: 1   MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDL---------QLERIQVYY 51
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SD          Q    +   
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGEYHGDSDSFGPAPRYQSQSPLTKHTE 60

Query: 52  NEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVEL 111
            E +  ++P   LV+ +PG                      +S  A   A    +E    
Sbjct: 61  KEEKTEWMPLRYLVNGKPG---------------------NRSSQAPEEATAQESENSRA 99

Query: 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREI 171
                +  R+E E  D  +  Q T               FRS         +   KMREI
Sbjct: 100 SQPSSE-PRKEEEVADADEKRQDTTC-------------FRSL--------RPDRKMREI 137

Query: 172 VHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAI 230
           VHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA GG Y+PRAI
Sbjct: 138 VHIQAGQCGNQIGAKFWEVISDEHGIDPTGEYHGDSDLQLERINVYYNEASGGKYVPRAI 197

Query: 231 LVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREA 290
           LVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ R+EA
Sbjct: 198 LVDLEPGTMDSVRSGPFGEIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 257

Query: 291 ENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYN 350
           E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++  FSVVPSPKVSDTVVEPYN
Sbjct: 258 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMTTFSVVPSPKVSDTVVEPYN 317

Query: 351 AILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 410
           A LS+  L+E +D+ +CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCLRFPG
Sbjct: 318 ATLSVHQLVENTDQAYCIDNEALYDICFRTLKLITPTYGDLNHLVSATMSGVTTCLRFPG 377

Query: 411 QLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
           QLNADLRKLAVNMVPFPRLHFFM G APL 
Sbjct: 378 QLNADLRKLAVNMVPFPRLHFFMPGFAPLT 407

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|74223737|dbj|BAE28709.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|117422544|gb|ABK34895.1| beta-tubulin [Blastocladiella emersonii] Back     alignment and taxonomy information
>gi|328773156|gb|EGF83193.1| Alpha-Beta tubulin [Batrachochytrium dendrobatidis JAM81] Back     alignment and taxonomy information
>gi|219553143|gb|ACL27209.1| beta-tubulin [Rhizophagus clarus] Back     alignment and taxonomy information
>gi|328768901|gb|EGF78946.1| Alpha-Beta tubulin [Batrachochytrium dendrobatidis JAM81] Back     alignment and taxonomy information
>gi|219553141|gb|ACL27208.1| beta-tubulin [Gigaspora gigantea] Back     alignment and taxonomy information
>gi|313222850|emb|CBY41790.1| unnamed protein product [Oikopleura dioica] gi|313245636|emb|CBY40309.1| unnamed protein product [Oikopleura dioica] gi|313247246|emb|CBY15537.1| unnamed protein product [Oikopleura dioica] Back     alignment and taxonomy information
>gi|346468265|gb|AEO33977.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
ZFIN|ZDB-GENE-051113-284 472 zgc:123194 "zgc:123194" [Danio 0.627 0.584 0.729 3.6e-112
UNIPROTKB|F1NYB1 444 TUBB3 "Uncharacterized protein 0.618 0.612 0.732 8.7e-111
UNIPROTKB|G1K342 445 TUBB3 "Uncharacterized protein 0.618 0.611 0.732 8.7e-111
UNIPROTKB|P09244 444 P09244 "Tubulin beta-7 chain" 0.618 0.612 0.736 8.7e-111
UNIPROTKB|Q2KJD0 444 TUBB5 "Tubulin beta-5 chain" [ 0.618 0.612 0.736 8.7e-111
UNIPROTKB|Q3MHM5 445 TUBB4B "Tubulin beta-4B chain" 0.618 0.611 0.732 8.7e-111
UNIPROTKB|E2QSF4 444 TUBB "Uncharacterized protein" 0.618 0.612 0.736 8.7e-111
UNIPROTKB|L7N0I7 445 TUBB4B "Uncharacterized protei 0.618 0.611 0.732 8.7e-111
UNIPROTKB|F8VW92 435 TUBB "Tubulin beta chain" [Hom 0.618 0.625 0.736 8.7e-111
UNIPROTKB|F8VYX6 435 TUBB "Tubulin beta chain" [Hom 0.618 0.625 0.736 8.7e-111
ZFIN|ZDB-GENE-051113-284 zgc:123194 "zgc:123194" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 202/277 (72%), Positives = 230/277 (83%)

Query:   164 TKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG 223
             T+ KMREIVH+Q GQCGNQ G KFWE IS EHG++  G Y G SDLQL+RI VYYNEA G
Sbjct:    24 TRAKMREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASG 83

Query:   224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
             G Y+PRA+LVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V
Sbjct:    84 GKYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 143

Query:   283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
             +D+ R+EAE+CDC+QGFQ+                  KIREEYPDR++N FSVVPSPKVS
Sbjct:   144 LDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVS 203

Query:   343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
             DTVVEPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +PSY DLNHLVSATM G+
Sbjct:   204 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGV 263

Query:   403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
             TTCLRFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct:   264 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 300
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P09244 P09244 "Tubulin beta-7 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJD0 TUBB5 "Tubulin beta-5 chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSF4 TUBB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F8VW92 TUBB "Tubulin beta chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8VYX6 TUBB "Tubulin beta chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UV72TBB_PESMINo assigned EC number0.77650.61810.6098N/AN/A
Q6P9T8TBB4B_RATNo assigned EC number0.78750.61810.6112yesN/A
Q6B856TBB2B_BOVINNo assigned EC number0.78460.62040.6134noN/A
Q9YHC3TBB1_GADMONo assigned EC number0.78460.62040.6134N/AN/A
P53373TBB_BOTFUNo assigned EC number0.78020.61810.6085N/AN/A
P53376TBB_RHYSENo assigned EC number0.78020.61810.6085N/AN/A
P09203TBB1_CHICKNo assigned EC number0.78100.62040.6134yesN/A
Q8SS99TBB_ENCCUNo assigned EC number0.76270.62040.6218yesN/A
P04350TBB4A_HUMANNo assigned EC number0.79120.61810.6126yesN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.79480.61810.6126yesN/A
P41388TBB_VENINNo assigned EC number0.78020.61810.6085N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.79480.61810.6126yesN/A
P02554TBB_PIGNo assigned EC number0.78830.62040.6134yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.79480.61810.6126noN/A
Q5R943TBB5_PONABNo assigned EC number0.79480.61810.6126yesN/A
P36221TBB1_NOTCONo assigned EC number0.78460.62040.6121N/AN/A
P68371TBB4B_HUMANNo assigned EC number0.79120.61810.6112yesN/A
P22014TBB2_COLGRNo assigned EC number0.77650.61810.6085N/AN/A
P32882TBB2_CHICKNo assigned EC number0.78460.62040.6134yesN/A
O44388TBB_TRITRNo assigned EC number0.78830.62040.6148N/AN/A
Q27U48TBB1_GLOMMNo assigned EC number0.78460.62040.6107N/AN/A
O42786TBB_MYCPJNo assigned EC number0.78020.61810.6085N/AN/A
P40905TBB2_ERYPINo assigned EC number0.77650.61810.6085N/AN/A
P40904TBB2_COLGLNo assigned EC number0.77650.61810.6085N/AN/A
Q6QDC9TBB_MYCGRNo assigned EC number0.77650.61810.6085N/AN/A
P09206TBB3_CHICKNo assigned EC number0.78460.62040.6134yesN/A
P69893TBB5_CRIGRNo assigned EC number0.79480.61810.6126yesN/A
P68372TBB4B_MOUSENo assigned EC number0.79120.61810.6112yesN/A
P69895TBB5_MACMUNo assigned EC number0.79480.61810.6126yesN/A
P69897TBB5_RATNo assigned EC number0.79480.61810.6126yesN/A
P24637TBB_PNECANo assigned EC number0.78380.61810.6153N/AN/A
P99024TBB5_MOUSENo assigned EC number0.79480.61810.6126yesN/A
P09244TBB7_CHICKNo assigned EC number0.79480.61810.6126yesN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.78460.62040.6134yesN/A
P41799TBB_PHANONo assigned EC number0.77730.62040.6107N/AN/A
O17449TBB1_MANSENo assigned EC number0.78830.62040.6107N/AN/A
Q24560TBB1_DROMENo assigned EC number0.78460.62040.6107yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.79480.61810.6126yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.79120.61810.6126N/AN/A
P16040TBB_ERYGRNo assigned EC number0.78020.61810.6098N/AN/A
P11833TBB_PARLINo assigned EC number0.78830.62040.6107N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.79120.61810.6126noN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.78460.62040.6134yesN/A
Q91575TBB5_XENLANo assigned EC number0.79480.61810.6126N/AN/A
P07437TBB5_HUMANNo assigned EC number0.79480.61810.6126yesN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.79120.61810.6112noN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.79120.61810.6126yesN/A
P30883TBB4_XENLANo assigned EC number0.78830.62040.6134N/AN/A
Q3KRE8TBB2B_RATNo assigned EC number0.78460.62040.6134yesN/A
Q9HFQ3TBB_MELLINo assigned EC number0.77280.61810.6071N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-159
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 1e-109
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-101
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-100
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 4e-98
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-96
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 2e-94
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-92
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 3e-92
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 6e-92
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-82
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 9e-76
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 3e-74
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-71
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-71
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 1e-69
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 1e-57
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 6e-45
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-43
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 4e-41
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 6e-40
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-39
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 6e-38
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-37
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 2e-37
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 4e-35
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 3e-33
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-30
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 8e-30
cd02202 349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 6e-09
cd06060 493 cd06060, misato, Human Misato shows similarity wit 8e-08
cd06060493 cd06060, misato, Human Misato shows similarity wit 0.002
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  574 bits (1481), Expect = 0.0
 Identities = 215/273 (78%), Positives = 242/273 (88%), Gaps = 1/273 (0%)

Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 227
           REIVHIQ GQCGNQ G KFWE IS EHGL+  G Y+G SDLQLERI VY+NEA GG Y+P
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTR 287
           RAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+ R
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120

Query: 288 REAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVE 347
           +EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++  FSV PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180

Query: 348 PYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 407
           PYNA LS+  L+E SDETFCIDNEALYDIC R+LKL +P+Y DLNHLVSA M GITTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240

Query: 408 FPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
           FPGQLN+DLRKLAVNMVPFPRLHFFM G APL 
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLT 273

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
COG5023 443 Tubulin [Cytoskeleton] 100.0
PLN00221 450 tubulin alpha chain; Provisional 100.0
KOG1374|consensus 448 100.0
PTZ00335 448 tubulin alpha chain; Provisional 100.0
PLN00222 454 tubulin gamma chain; Provisional 100.0
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010 445 tubulin beta chain; Provisional 100.0
PLN00220 447 tubulin beta chain; Provisional 100.0
PTZ00387 465 epsilon tubulin; Provisional 100.0
cd02187 425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus 407 100.0
cd06059 382 Tubulin The tubulin superfamily includes five dist 100.0
COG5023443 Tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG1374|consensus448 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1375|consensus 369 100.0
KOG1376|consensus407 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
KOG2530|consensus 483 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 99.97
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 99.96
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.94
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.93
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.93
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.91
PRK13018 378 cell division protein FtsZ; Provisional 99.9
PF14881180 Tubulin_3: Tubulin domain 99.89
PRK09330 384 cell division protein FtsZ; Validated 99.86
KOG2530|consensus483 99.86
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.75
KOG1375|consensus369 99.61
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.42
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.42
COG0206 338 FtsZ Cell division GTPase [Cell division and chrom 99.41
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.16
PF14881180 Tubulin_3: Tubulin domain 99.15
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 98.79
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 98.61
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 98.61
PRK13018378 cell division protein FtsZ; Provisional 98.38
PRK09330384 cell division protein FtsZ; Validated 98.01
PF13809345 Tubulin_2: Tubulin like 96.71
PF13809345 Tubulin_2: Tubulin like 94.68
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-94  Score=684.60  Aligned_cols=273  Identities=58%  Similarity=1.070  Sum_probs=269.5

Q ss_pred             eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915        168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP  246 (440)
Q Consensus       168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~  246 (440)
                      ||||||||+||||||||++||+++|.||+|.++|.+....+.+.++.++||+|+..+ |+||||+|||||+||+.|++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            899999999999999999999999999999999998887788889999999999998 9999999999999999999999


Q ss_pred             CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915        247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP  326 (440)
Q Consensus       247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~  326 (440)
                      |+++|||+|++++++|||||||+|+|++|+++.|.++|.|||++|.||.||||+++||++||||||+||.|+|+|++|||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915        327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL  406 (440)
Q Consensus       327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~  406 (440)
                      ||.+.+|+|+|+++.++++|||||++|++++|.|+||+++++||++|+++|.+++++++|+|.++|+|||++++++|+++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915        407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV  440 (440)
Q Consensus       407 r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~  440 (440)
                      ||||++|.||.+|++|||||||+||+.++|+|++
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~  274 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFT  274 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCccc
Confidence            9999999999999999999999999999999985

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-122
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-122
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-122
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-122
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-121
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-121
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-121
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-121
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-121
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-106
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 9e-59
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 6e-58
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 6e-58
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 6e-58
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 9e-58
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-57
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 2e-57
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-57
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 3e-57
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 3e-57
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 8e-57
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 8e-57
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 8e-57
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 9e-53
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 9e-53
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-43
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA G  Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
           R+E+E+CDC+QGFQ+                  KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
           RFPGQLNADLRKLAVNMVPFPRLHFFM G APL 
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-171
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-74
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-171
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-75
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-167
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-79
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-165
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 7e-77
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-164
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 1e-72
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-06
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
 Score =  487 bits (1255), Expect = e-171
 Identities = 110/276 (39%), Positives = 176/276 (63%), Gaps = 5/276 (1%)

Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 227
           REI+ +Q+GQCGNQ G +FW+++  EHG++     E  +    +R  V++ +A    YIP
Sbjct: 3   REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62

Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQ--SGAANNWAKGHYTEGVELVDAVMDL 285
           RA+L+DLEP  + ++ + PY K++ P+N    +   GA NNWA G +++G ++ + + D+
Sbjct: 63  RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121

Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP-KVSDT 344
             REA+  D ++GF + HS+ GGTGSG+G+ LL ++ + YP +++  +SV P+  ++SD 
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181

Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
           VV+PYN++L+L  L + +D    +DN AL  I    L + +PS+  +N LVS  M   TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241

Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
            LR+PG +N DL  L  +++P PRLHF M+G  PL 
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLT 277
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A 364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.67
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 99.64
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.57
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.56
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.54
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.53
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.5
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.46
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.45
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.22
3r4v_A 315 Putative uncharacterized protein; tubulin, unknown 99.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 98.74
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 97.98
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 95.94
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=2.4e-84  Score=658.80  Aligned_cols=273  Identities=78%  Similarity=1.337  Sum_probs=268.7

Q ss_pred             eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915        168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP  246 (440)
Q Consensus       168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~  246 (440)
                      |||||+||+||||||||++||+++|+||+|+++|++.++++.+++++++||+|+..+ |+||||+|||||++|++|++++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            899999999999999999999999999999999999988888888999999999888 9999999999999999999999


Q ss_pred             CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915        247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP  326 (440)
Q Consensus       247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~  326 (440)
                      ++++|+|++++++++|||||||+|||+.|+++.|+++|+|||++|+||.+|||+++||++||||||+|+.++|+|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915        327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL  406 (440)
Q Consensus       327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~  406 (440)
                      |+.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.++++++.|+|.++|++||++|+++|+++
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~sl  240 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhcccc
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915        407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV  440 (440)
Q Consensus       407 r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~  440 (440)
                      ||||++|+||.+|++|||||||+||++++|+|++
T Consensus       241 Rf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~  274 (445)
T 3ryc_B          241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT  274 (445)
T ss_dssp             HSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCC
T ss_pred             ccCcccccCHHHHhhcccCCCceeeeccccCccc
Confidence            9999999999999999999999999999999985
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 440
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-125
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 7e-66
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-113
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-58
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-108
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 6e-51
d1tubb2 184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 2e-13
d1tuba2 195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 2e-13
d2btoa2 180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 3e-10
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 7e-05
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 0.001
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 0.003
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  360 bits (924), Expect = e-125
 Identities = 188/243 (77%), Positives = 216/243 (88%), Gaps = 1/243 (0%)

Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
           MREIVHIQ GQCGNQ G KFWE IS EHG++  G Y G SDLQLERI VYYNEA G  Y+
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
           PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+ 
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
           R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
           EPYNA LS+  L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 407 RFP 409
           RFP
Sbjct: 241 RFP 243
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.61
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.6
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.57
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.56
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 94.93
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 93.76
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 93.32
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.3e-74  Score=544.59  Aligned_cols=242  Identities=78%  Similarity=1.347  Sum_probs=236.6

Q ss_pred             eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915        168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP  246 (440)
Q Consensus       168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~  246 (440)
                      |||||+||+||||||||.+||+++++||+++++|.+..+.+...+++++||+|+..+ |+||||+||+||++|+++++++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            999999999999999999999999999999999998877777778899999999888 9999999999999999999999


Q ss_pred             CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915        247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP  326 (440)
Q Consensus       247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~  326 (440)
                      ++++|+|++++++++|+|||||+|||..|+++.|+++|.|||++|+||++|||+++||++||||||+||+++|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915        327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL  406 (440)
Q Consensus       327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~  406 (440)
                      ++.+++++|+|++..+++++||||++|+|++|.+++|+++++||++|+++|.+.++++.++|.++|++||++|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy17915        407 RFP  409 (440)
Q Consensus       407 r~~  409 (440)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure