Psyllid ID: psy17917

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MESDAYNATSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIRRSGTQSKDGKNNEYKLKSTKFD
ccccccccccccccccHHHHHHHHHHHHHHHHHHEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccEEHHEccHHHHHHHHHHccccccccccccccccccccEEEEccccccccccc
mesdaynatsilalpdvtLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFcllvipfsttrFYFKTWIHGKFLCTVvpfiqysnvgVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALsfgmqiptlagqwgrfdldtrlltcsilpdengrssKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCylpitvvktvdsevhfpglHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIrrsgtqskdgknneyklkstkfd
MESDAYNATSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRssekrlrrhtskiqskkdqkelkakrndmriTKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLssirrsgtqskdgknneyklkstkfd
MESDAYNATSILALPDVTLKItavctviiavvgvvgNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIRRSGTQSKDGKNNEYKLKSTKFD
******NATSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR****************************MRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLL**************************
************ALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSS****************************ITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC********************************
********TSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSS**********************KRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIR***********NEYKLKSTKFD
***DAYNATSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKK*******KRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKN*****************************
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESDAYNATSILALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVxxxxxxxxxxxxxxxxxxxxxKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIRRSGTQSKDGKNNEYKLKSTKFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q9W534 670 G-protein coupled recepto no N/A 0.871 0.444 0.555 1e-108
Q29J90 675 G-protein coupled recepto yes N/A 0.605 0.306 0.632 4e-76
Q9NDM2392 Protein trapped in endode no N/A 0.988 0.862 0.372 8e-58
P49286362 Melatonin receptor type 1 yes N/A 0.833 0.787 0.277 5e-25
P49288346 Melatonin receptor type 1 no N/A 0.850 0.841 0.271 1e-24
P49217353 Melatonin receptor type 1 N/A N/A 0.777 0.753 0.283 1e-23
P49219420 Melatonin receptor type 1 N/A N/A 0.897 0.730 0.255 2e-23
Q61184353 Melatonin receptor type 1 yes N/A 0.777 0.753 0.283 4e-23
P41144380 Kappa-type opioid recepto no N/A 0.824 0.742 0.291 1e-22
P48039350 Melatonin receptor type 1 no N/A 0.777 0.76 0.272 2e-22
>sp|Q9W534|MOODY_DROME G-protein coupled receptor moody OS=Drosophila melanogaster GN=moody PE=2 SV=2 Back     alignment and function desciption
 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/351 (55%), Positives = 231/351 (65%), Gaps = 53/351 (15%)

Query: 19  LKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT 78
           L   AV T +I +VG+ GN LTVVALL+CPK+RNVAAAFI+SLCIAD  FC LV+PF   
Sbjct: 36  LTFAAVMTFLIMIVGICGNLLTVVALLKCPKVRNVAAAFIISLCIADLLFCALVLPFQGL 95

Query: 79  RFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGC 138
           RF   TW HG+ LC ++PFIQY N+GVSL CIAMITINRY+MI HH +Y  IYK  WI  
Sbjct: 96  RFVQGTWRHGQVLCRLIPFIQYGNIGVSLLCIAMITINRYVMITHHGLYARIYKRHWIAV 155

Query: 139 MIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVII 198
           MIA C+  S+GMQ+PTL G+WGRF  D+RL TCSI+ D++G SSK  LF+  FVIPC++I
Sbjct: 156 MIAACWLFSYGMQLPTLLGEWGRFGYDSRLQTCSIMTDDHGHSSKTTLFITAFVIPCLVI 215

Query: 199 ILCYAKIFWVVRSSEKRLRRHTSK------------------------------------ 222
           I CYAKIFWVV  SE+RL+RH +K                                    
Sbjct: 216 IACYAKIFWVVHKSEQRLKRHATKQNSIPNNLRPLASTGSGALPSGAECQPSNRVSSDSS 275

Query: 223 ----------IQSKKDQ-------KELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTV 265
                       S K Q       +E++AKRN+ RITKMVL IFLSF+ CYLPIT+VK  
Sbjct: 276 SSFSIDVPETAPSGKQQPTRVKDQREVRAKRNEWRITKMVLAIFLSFVVCYLPITIVKVA 335

Query: 266 DSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLL 316
           D  V  P LH+ SYI LYLSACINPIIYVIMNKQYR AYKTV+ C+  RLL
Sbjct: 336 DKNVEHPSLHICSYILLYLSACINPIIYVIMNKQYRKAYKTVVFCQPARLL 386
Isoform A and isoform B are required in glia to regulate the acute sensitivity to cocaine and to continuously maintain the proper blood-brain barrier (BBB) function. A moody-mediated signaling pathway functions in glia to regulate nervous system insulation and drug-related behaviors. G-ialpha65A and G-oalpha47A, and the regulator of G protein signaling, loco, are required in the surface glia to achieve effective insulation. The components function by regulating the cortical actin and thereby stabilizing the extended morphology of the surface glia, which in turn is necessary for the formation of septate junctions of sufficient length to achieve proper sealing of the nerve cord.
Drosophila melanogaster (taxid: 7227)
>sp|Q29J90|MOODY_DROPS G-protein coupled receptor moody OS=Drosophila pseudoobscura pseudoobscura GN=moody PE=3 SV=2 Back     alignment and function description
>sp|Q9NDM2|GUTR1_DROME Protein trapped in endoderm-1 OS=Drosophila melanogaster GN=Tre1 PE=1 SV=1 Back     alignment and function description
>sp|P49286|MTR1B_HUMAN Melatonin receptor type 1B OS=Homo sapiens GN=MTNR1B PE=2 SV=1 Back     alignment and function description
>sp|P49288|MTR1C_CHICK Melatonin receptor type 1C OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|P49217|MTR1A_PHOSU Melatonin receptor type 1A OS=Phodopus sungorus GN=MTNR1A PE=2 SV=2 Back     alignment and function description
>sp|P49219|MTR1C_XENLA Melatonin receptor type 1C OS=Xenopus laevis GN=mtnr1c PE=2 SV=1 Back     alignment and function description
>sp|Q61184|MTR1A_MOUSE Melatonin receptor type 1A OS=Mus musculus GN=Mtnr1a PE=2 SV=1 Back     alignment and function description
>sp|P41144|OPRK_CAVPO Kappa-type opioid receptor OS=Cavia porcellus GN=OPRK1 PE=2 SV=1 Back     alignment and function description
>sp|P48039|MTR1A_HUMAN Melatonin receptor type 1A OS=Homo sapiens GN=MTNR1A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
320541677 633 moody, isoform C [Drosophila melanogaste 0.935 0.505 0.528 1e-107
195397491 650 GJ16387 [Drosophila virilis] gi|19414712 0.871 0.458 0.558 1e-107
194912885 681 GG12657 [Drosophila erecta] gi|190648261 0.871 0.437 0.555 1e-106
23397436 670 moody, isoform A [Drosophila melanogaste 0.871 0.444 0.555 1e-106
3676114 670 EG:22E5.11 [Drosophila melanogaster] 0.871 0.444 0.555 1e-106
195477846 675 GE16986 [Drosophila yakuba] gi|194187848 0.871 0.441 0.555 1e-106
21464368 670 RE06985p [Drosophila melanogaster] 0.871 0.444 0.555 1e-106
195347801 670 GM18925 [Drosophila sechellia] gi|194121 0.871 0.444 0.552 1e-106
195130245 637 GI15426 [Drosophila mojavensis] gi|19390 0.938 0.503 0.518 1e-102
383848181384 PREDICTED: G-protein coupled receptor mo 0.929 0.828 0.550 1e-102
>gi|320541677|ref|NP_001188535.1| moody, isoform C [Drosophila melanogaster] gi|320541679|ref|NP_001188536.1| moody, isoform D [Drosophila melanogaster] gi|318069302|gb|ADV37619.1| moody, isoform C [Drosophila melanogaster] gi|318069303|gb|ADV37620.1| moody, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/373 (52%), Positives = 239/373 (64%), Gaps = 53/373 (14%)

Query: 19  LKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT 78
           L   AV T +I +VG+ GN LTVVALL+CPK+RNVAAAFI+SLCIAD  FC LV+PF   
Sbjct: 36  LTFAAVMTFLIMIVGICGNLLTVVALLKCPKVRNVAAAFIISLCIADLLFCALVLPFQGL 95

Query: 79  RFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGC 138
           RF   TW HG+ LC ++PFIQY N+GVSL CIAMITINRY+MI HH +Y  IYK  WI  
Sbjct: 96  RFVQGTWRHGQVLCRLIPFIQYGNIGVSLLCIAMITINRYVMITHHGLYARIYKRHWIAV 155

Query: 139 MIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVII 198
           MIA C+  S+GMQ+PTL G+WGRF  D+RL TCSI+ D++G SSK  LF+  FVIPC++I
Sbjct: 156 MIAACWLFSYGMQLPTLLGEWGRFGYDSRLQTCSIMTDDHGHSSKTTLFITAFVIPCLVI 215

Query: 199 ILCYAKIFWVVRSSEKRLRRHTSK------------------------------------ 222
           I CYAKIFWVV  SE+RL+RH +K                                    
Sbjct: 216 IACYAKIFWVVHKSEQRLKRHATKQNSIPNNLRPLASTGSGALPSGAECQPSNRVSSDSS 275

Query: 223 ----------IQSKKDQ-------KELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTV 265
                       S K Q       +E++AKRN+ RITKMVL IFLSF+ CYLPIT+VK  
Sbjct: 276 SSFSIDVPETAPSGKQQPTRVKDQREVRAKRNEWRITKMVLAIFLSFVVCYLPITIVKVA 335

Query: 266 DSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIRRSGTQ 325
           D  V  P LH+ SYI LYLSACINPIIYVIMNKQYR AYKTV+ C+  RLL    ++   
Sbjct: 336 DKNVEHPSLHICSYILLYLSACINPIIYVIMNKQYRKAYKTVVFCQPARLLLPFGKTNGA 395

Query: 326 SKDGKNNEYKLKS 338
           S   +   Y+++ 
Sbjct: 396 SSAAEMERYRVEQ 408

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195397491|ref|XP_002057362.1| GJ16387 [Drosophila virilis] gi|194147129|gb|EDW62848.1| GJ16387 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194912885|ref|XP_001982585.1| GG12657 [Drosophila erecta] gi|190648261|gb|EDV45554.1| GG12657 [Drosophila erecta] Back     alignment and taxonomy information
>gi|23397436|ref|NP_569970.2| moody, isoform A [Drosophila melanogaster] gi|320541675|ref|NP_001188534.1| moody, isoform B [Drosophila melanogaster] gi|442614880|ref|NP_001259170.1| moody, isoform E [Drosophila melanogaster] gi|442614882|ref|NP_001259171.1| moody, isoform F [Drosophila melanogaster] gi|75027992|sp|Q9W534.2|MOODY_DROME RecName: Full=G-protein coupled receptor moody gi|22831544|gb|AAF45709.2| moody, isoform A [Drosophila melanogaster] gi|318069301|gb|ADV37618.1| moody, isoform B [Drosophila melanogaster] gi|440216353|gb|AGB95016.1| moody, isoform E [Drosophila melanogaster] gi|440216354|gb|AGB95017.1| moody, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|3676114|emb|CAA21123.1| EG:22E5.11 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195477846|ref|XP_002100324.1| GE16986 [Drosophila yakuba] gi|194187848|gb|EDX01432.1| GE16986 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|21464368|gb|AAM51987.1| RE06985p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195347801|ref|XP_002040440.1| GM18925 [Drosophila sechellia] gi|194121868|gb|EDW43911.1| GM18925 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195130245|ref|XP_002009563.1| GI15426 [Drosophila mojavensis] gi|193908013|gb|EDW06880.1| GI15426 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|383848181|ref|XP_003699730.1| PREDICTED: G-protein coupled receptor moody-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
FB|FBgn0025631 670 moody "moody" [Drosophila mela 0.552 0.282 0.650 8.4e-102
UNIPROTKB|Q29J90 675 moody "G-protein coupled recep 0.552 0.28 0.650 7.5e-101
FB|FBgn0046687392 Tre1 "Trapped in endoderm 1" [ 0.883 0.770 0.389 6.1e-55
FB|FBgn0025632 572 CG4313 [Drosophila melanogaste 0.523 0.312 0.407 2.5e-54
UNIPROTKB|P49288346 P49288 "Melatonin receptor typ 0.821 0.812 0.273 2.5e-26
UNIPROTKB|F1NFK6380 GALR2 "Uncharacterized protein 0.760 0.684 0.266 3.2e-26
UNIPROTKB|P49286362 MTNR1B "Melatonin receptor typ 0.760 0.718 0.264 1.8e-25
MGI|MGI:102967353 Mtnr1a "melatonin receptor 1A" 0.760 0.736 0.285 2.9e-25
UNIPROTKB|F1NFK7312 GPR151 "Uncharacterized protei 0.763 0.836 0.252 4.6e-25
MGI|MGI:2181726364 Mtnr1b "melatonin receptor 1B" 0.760 0.714 0.260 9.7e-25
FB|FBgn0025631 moody "moody" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 682 (245.1 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 123/189 (65%), Positives = 147/189 (77%)

Query:    37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
             N LTVVALL+CPK+RNVAAAFI+SLCIAD  FC LV+PF   RF   TW HG+ LC ++P
Sbjct:    54 NLLTVVALLKCPKVRNVAAAFIISLCIADLLFCALVLPFQGLRFVQGTWRHGQVLCRLIP 113

Query:    97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
             FIQY N+GVSL CIAMITINRY+MI HH +Y  IYK  WI  MIA C+  S+GMQ+PTL 
Sbjct:   114 FIQYGNIGVSLLCIAMITINRYVMITHHGLYARIYKRHWIAVMIAACWLFSYGMQLPTLL 173

Query:   157 GQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRL 216
             G+WGRF  D+RL TCSI+ D++G SSK  LF+  FVIPC++II CYAKIFWVV  SE+RL
Sbjct:   174 GEWGRFGYDSRLQTCSIMTDDHGHSSKTTLFITAFVIPCLVIIACYAKIFWVVHKSEQRL 233

Query:   217 RRHTSKIQS 225
             +RH +K  S
Sbjct:   234 KRHATKQNS 242
GO:0016021 "integral to membrane" evidence=ISS
GO:0008502 "melatonin receptor activity" evidence=ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS;NAS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0048148 "behavioral response to cocaine" evidence=IMP
GO:0035095 "behavioral response to nicotine" evidence=IMP
GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP
GO:0048149 "behavioral response to ethanol" evidence=IMP
GO:0019991 "septate junction assembly" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0007419 "ventral cord development" evidence=IMP
GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP
UNIPROTKB|Q29J90 moody "G-protein coupled receptor moody" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
FB|FBgn0046687 Tre1 "Trapped in endoderm 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0025632 CG4313 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P49288 P49288 "Melatonin receptor type 1C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFK6 GALR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P49286 MTNR1B "Melatonin receptor type 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:102967 Mtnr1a "melatonin receptor 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFK7 GPR151 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2181726 Mtnr1b "melatonin receptor 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q29J90MOODY_DROPSNo assigned EC number0.63280.60520.3066yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-38
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 1e-17
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 2e-09
pfam10323283 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR 3e-07
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 6e-05
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 2e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  136 bits (344), Expect = 3e-38
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 17/260 (6%)

Query: 42  VALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYS 101
           + +LR  K+R     F+++L +AD  F L + P++        W  G  LC +V F+   
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 102 NVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGR 161
           N   S+  +  I+I+RY+ I H   Y  I  P     +I   + L+  + +P L   W R
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 162 FDLDTRLLTCSILPDENGRSSKRAL--FLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRH 219
              +  + TC I   E        L   L+GFV+P ++I++CY  I   +R   +     
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180

Query: 220 TSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISY 279
               +S            + +  KM+LV+ + F+ C+LP  +V  +DS        ++  
Sbjct: 181 ARAKRS---------SSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPT 231

Query: 280 IFL------YLSACINPIIY 293
             L      Y+++C+NPIIY
Sbjct: 232 ALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor Srv Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
KOG4220|consensus503 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
KOG2087|consensus363 99.94
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.93
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.89
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.88
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.87
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.83
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.81
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.75
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.43
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.42
KOG4193|consensus610 99.32
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.29
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 99.16
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 99.14
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 99.09
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 99.02
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.99
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 98.86
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.8
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.77
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.75
KOG4564|consensus473 98.68
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 98.65
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.63
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 98.6
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 97.72
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 97.71
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 97.58
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 97.46
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 97.0
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 95.98
KOG4289|consensus2531 95.61
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 95.32
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-45  Score=298.97  Aligned_cols=289  Identities=21%  Similarity=0.377  Sum_probs=237.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccc
Q psy17917         12 LALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL   91 (342)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (342)
                      ...+.....+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.....+..+|.+|...
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            34555677789999999999999999999999999999999999999999999999999999998888888999999999


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccC---CCc
Q psy17917         92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLD---TRL  168 (342)
Q Consensus        92 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---~~~  168 (342)
                      |++..++......+|+++++++|+|||.||.+|++.+  .+++...++++++|+.+++++.|..+.......+.   ...
T Consensus       108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~  185 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESR  185 (423)
T ss_pred             eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcce
Confidence            9999999999999999999999999999999998754  68888999999999999999999887522111111   112


Q ss_pred             cccc---cCC--C-CC----CchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhcc
Q psy17917        169 LTCS---ILP--D-EN----GRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRND  238 (342)
Q Consensus       169 ~~C~---~~~--~-~~----~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                      ..|.   .+.  . +.    .+.|.....++.+++|++++...|..|.+.+|..+....         .+.++.++.+.+
T Consensus       186 ~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd---------~~d~~~~~~kak  256 (423)
T KOG4219|consen  186 VVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGD---------QQDRKHEQLKAK  256 (423)
T ss_pred             EEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccc---------hhchhhHHHHHH
Confidence            2332   222  1 11    122667788899999999999999999999997642111         111233445556


Q ss_pred             chhHHHHHHHHHHHHHhhhhHHHHHhccCCC-------CCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhh
Q psy17917        239 MRITKMVLVIFLSFLTCYLPITVVKTVDSEV-------HFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCE  311 (342)
Q Consensus       239 ~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~-------~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~  311 (342)
                      +|+.|+++++++.|.+||+|+.+..++....       ....++....++++.|++.||+||++.|++||.++++.++|+
T Consensus       257 ~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  257 KKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC  336 (423)
T ss_pred             HHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence            6899999999999999999999988875321       123477788899999999999999999999999999999876

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
2x72_A349 Crystal Structure Of The Constitutively Active E113 3e-20
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 3e-20
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 3e-20
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 4e-20
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 4e-20
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 5e-20
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 2e-19
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 2e-19
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 2e-15
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-15
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 4e-12
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 5e-12
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 1e-11
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-11
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 2e-11
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-11
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-11
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 5e-09
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 5e-08
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 3e-07
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 2e-06
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 2e-06
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-06
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 5e-06
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 9e-06
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 4e-05
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 7e-05
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 2e-04
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 8e-05
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 3e-04
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 3e-04
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 3e-04
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 4e-04
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37  NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
           N LT+   ++  K+R      +++L +AD F  ++   F+TT +   T +HG F+     
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 110
Query: 92  CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
           C +  F       ++L  + ++ I RY+++    M N  +        +AF + ++    
Sbjct: 111 CNLQGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
            P L G W R+  +    +C I    P E  N  S    +F++ F+IP ++I  CY ++ 
Sbjct: 170 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
           + V+ +            + + Q+    ++ +  +T+MV+++ ++FL C+LP   V    
Sbjct: 229 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 276
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
            T       P    I   F   SA  NP+IY++MNKQ+R    T L C KN L
Sbjct: 277 FTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 329
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 8e-67
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 3e-58
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 6e-49
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 8e-46
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 2e-39
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 6e-37
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 6e-29
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-10
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 3e-28
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 3e-09
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-26
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-09
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-26
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 4e-07
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-24
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-08
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 7e-24
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-04
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 1e-23
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 2e-08
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-23
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 2e-08
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 1e-21
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  215 bits (550), Expect = 8e-67
 Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 9/306 (2%)

Query: 13  ALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLL- 71
            +PD       +   I  ++G  GN + +    +   ++  A  FI++L  +DF F L+ 
Sbjct: 28  QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVN 87

Query: 72  VIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIY 131
             P  T   + K WI G   C V  FI      +S+  +AMI+I+RY +I      +   
Sbjct: 88  GFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM 147

Query: 132 KPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSI---LPDENGRSSKRALFL 188
                  MI F +  S    I  + G WG + L+  L  CS      D   RS+   +F+
Sbjct: 148 SHRRAFIMIIFVWLWSVLWAIGPIFG-WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFI 206

Query: 189 IGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVI 248
           +GF  P +II  CY  I   V + EK +     ++ +K+ +K       +MR+ K+ +VI
Sbjct: 207 LGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVI 266

Query: 249 FLSFLTCYLPITVVKTV----DSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAY 304
              FL  + P  VV  +      E   P    +  +F   SA  NP+IY + + ++R A 
Sbjct: 267 VSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAI 326

Query: 305 KTVLMC 310
                 
Sbjct: 327 SQTFPW 332
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.72
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.49
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.88
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=9.1e-49  Score=353.41  Aligned_cols=295  Identities=19%  Similarity=0.304  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccc---cchhhHHHhHhHHHHHHHhhhhhhhhHHHhh--ccccccccch
Q psy17917         18 TLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIR---NVAAAFIVSLCIADFFFCLLVIPFSTTRFYF--KTWIHGKFLC   92 (342)
Q Consensus        18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~---~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~--~~~~~~~~~C   92 (342)
                      ...+..+++.+++++|++||+++++++.+++++|   +++|+|++|||++|++.+++.+|+.+.....  +.|.+|+.+|
T Consensus        31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C  110 (510)
T 4grv_A           31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC  110 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence            4567778889999999999999999999877554   6889999999999999999999988877654  4699999999


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc-----CCC
Q psy17917         93 TVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL-----DTR  167 (342)
Q Consensus        93 ~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-----~~~  167 (342)
                      ++..++..++..+|++++++||+|||+||++|++|+...+++++..+++++|++++++++|+++. ++....     ...
T Consensus       111 ~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~-~~~~~~~~~~~~~~  189 (510)
T 4grv_A          111 RGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFT-MGLQNRSADGTHPG  189 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHH-EEEEECSSSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHh-hcccccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998875 222211     112


Q ss_pred             ccccccCCCCC-CchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccc-----------------------
Q psy17917        168 LLTCSILPDEN-GRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKI-----------------------  223 (342)
Q Consensus       168 ~~~C~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-----------------------  223 (342)
                      ...|...++.. ...+..+..++.+++|+++++++|..|++.++++.+.....+...                       
T Consensus       190 ~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (510)
T 4grv_A          190 GLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT  269 (510)
T ss_dssp             GEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECC
T ss_pred             ccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccC
Confidence            33455444332 233445556778999999999999999999987543211100000                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy17917        224 --------------------------------------------------------------------------------  223 (342)
Q Consensus       224 --------------------------------------------------------------------------------  223 (342)
                                                                                                      
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (510)
T 4grv_A          270 KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF  349 (510)
T ss_dssp             CSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCC
Confidence                                                                                            


Q ss_pred             --------------------------hh--------------hhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHH
Q psy17917        224 --------------------------QS--------------KKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK  263 (342)
Q Consensus       224 --------------------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~  263 (342)
                                                +.              ..+....++.++|+|+++++++++++|++||+|+++..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~  429 (510)
T 4grv_A          350 TNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRR  429 (510)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      00              00000111234578999999999999999999999887


Q ss_pred             hccCCC---CCc--------hHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhh
Q psy17917        264 TVDSEV---HFP--------GLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKN  313 (342)
Q Consensus       264 ~~~~~~---~~~--------~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~  313 (342)
                      ++....   ...        .+..+..+++++||++||+||.++|++||++++++++|+++
T Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~  490 (510)
T 4grv_A          430 LMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCP  490 (510)
T ss_dssp             HHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred             HHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Confidence            764221   111        24557778999999999999999999999999999987654
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-30
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (291), Expect = 1e-30
 Identities = 59/319 (18%), Positives = 121/319 (37%), Gaps = 19/319 (5%)

Query: 15  PDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIP 74
                 + A    ++ ++G   N LT+   ++  K+R      +++L +AD F       
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 75  FSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPV 134
            +        ++ G   C +  F       ++L  + ++ I RY+++          +  
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152

Query: 135 WIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKR---ALFLIGF 191
            I  +             P +       +                 +++     +F++ F
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212

Query: 192 VIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251
           +IP ++I  CY ++ + V+ +  + +   +  +++K             +T+MV+++ ++
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK------------EVTRMVIIMVIA 260

Query: 252 FLTCYLPITVVK----TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTV 307
           FL C+LP   V     T       P    I   F   SA  NP+IY++MNKQ+R    T 
Sbjct: 261 FLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT 320

Query: 308 LMCEKNRLLSSIRRSGTQS 326
           L C KN L      +    
Sbjct: 321 LCCGKNPLGDDEASTTVSK 339

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-41  Score=291.39  Aligned_cols=285  Identities=23%  Similarity=0.428  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhh
Q psy17917         18 TLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPF   97 (342)
Q Consensus        18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~   97 (342)
                      ...+.+.++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+...|....+
T Consensus        36 ~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  115 (348)
T d1u19a_          36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF  115 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhh
Confidence            45577888899999999999999999999999999999999999999999999899988888888888888999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCC
Q psy17917         98 IQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDE  177 (342)
Q Consensus        98 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  177 (342)
                      ....+..++.++++++++|||.+|.+|++++.. ++++....++.+|..+++...++... ......+.....|......
T Consensus       116 ~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  193 (348)
T d1u19a_         116 FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQCSCGIDYYT  193 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTTTEEECCCSC
T ss_pred             ccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccc-cceeccCCccccccccccc
Confidence            999999999999999999999999999988776 55566677788888888888887776 3444444444444433221


Q ss_pred             -----CCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHH
Q psy17917        178 -----NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSF  252 (342)
Q Consensus       178 -----~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  252 (342)
                           ....+......+..++|.++++++|.++.+.++++.++.++            ..++.++++|.++++++++++|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~f  261 (348)
T d1u19a_         194 PHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE------------SATTQKAEKEVTRMVIIMVIAF  261 (348)
T ss_dssp             CCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS------------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccch------------hhhhHHHHhhHhheEEEeehHH
Confidence                 22334445566778899999999999998877765332111            1123344568999999999999


Q ss_pred             HHhhhhHHHHHhcc----CCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhhhhh
Q psy17917        253 LTCYLPITVVKTVD----SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLL  316 (342)
Q Consensus       253 ~~~~~P~~i~~~~~----~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~~~  316 (342)
                      ++||+|+.+..+..    ..........+..++..+|+++||+||.+++++||+++++++||++++..
T Consensus       262 ~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~~~  329 (348)
T d1u19a_         262 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLG  329 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCCTT
T ss_pred             HHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            99999998776642    22223346677788899999999999999999999999999987765433