Psyllid ID: psy17920
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | 2.2.26 [Sep-21-2011] | |||||||
| Q91VH2 | 595 | Sorting nexin-9 OS=Mus mu | yes | N/A | 0.638 | 0.421 | 0.364 | 5e-47 | |
| Q9Y5X1 | 595 | Sorting nexin-9 OS=Homo s | yes | N/A | 0.638 | 0.421 | 0.360 | 4e-46 | |
| Q91ZR2 | 614 | Sorting nexin-18 OS=Mus m | no | N/A | 0.692 | 0.442 | 0.353 | 6e-45 | |
| Q6NRL2 | 550 | Sorting nexin-33 OS=Xenop | N/A | N/A | 0.646 | 0.461 | 0.360 | 7e-45 | |
| Q28GP7 | 549 | Sorting nexin-33 OS=Xenop | no | N/A | 0.646 | 0.462 | 0.356 | 9e-45 | |
| Q4VAA7 | 574 | Sorting nexin-33 OS=Mus m | no | N/A | 0.646 | 0.442 | 0.345 | 3e-43 | |
| Q8WV41 | 574 | Sorting nexin-33 OS=Homo | no | N/A | 0.646 | 0.442 | 0.345 | 2e-42 | |
| Q96RF0 | 628 | Sorting nexin-18 OS=Homo | no | N/A | 0.516 | 0.323 | 0.342 | 3e-29 | |
| P0CR62 | 493 | Sorting nexin-4 OS=Crypto | yes | N/A | 0.139 | 0.111 | 0.379 | 0.0004 | |
| P0CR63 | 493 | Sorting nexin-4 OS=Crypto | N/A | N/A | 0.139 | 0.111 | 0.379 | 0.0004 |
| >sp|Q91VH2|SNX9_MOUSE Sorting nexin-9 OS=Mus musculus GN=Snx9 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 314 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDE 373
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ ++ +F +D VK L+ V + K+C +
Sbjct: 374 LVGVMIFSTMEPEAPDLDLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 433
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 434 EYQKIGKALQSLAAVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 493
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 494 HEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMN 553
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 554 HFHSNRIYDYNSVIRLYLEQQVQFYE 579
|
May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Promotes internalization of TNFR. Promotes degradation of EGFR after EGF signaling. Stimulates the GTPase activity of DNM1. Promotes DNM1 oligomerization. Promotes activation of the Arp2/3 complex by WASL, and thereby plays a role in the reorganization of the F-actin cytoskeleton. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Has lower affinity for membranes enriched in phosphatidylinositol 3-phosphate. Mus musculus (taxid: 10090) |
| >sp|Q9Y5X1|SNX9_HUMAN Sorting nexin-9 OS=Homo sapiens GN=SNX9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 314 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 373
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 374 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 433
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 434 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 493
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 494 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 553
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 554 HFHSNRIYDYNSVIRLYLEQQVQFYE 579
|
May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Promotes internalization of TNFR. Promotes degradation of EGFR after EGF signaling. Stimulates the GTPase activity of DNM1. Promotes DNM1 oligomerization. Promotes activation of the Arp2/3 complex by WASL, and thereby plays a role in the reorganization of the F-actin cytoskeleton. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Has lower affinity for membranes enriched in phosphatidylinositol 3-phosphate. Homo sapiens (taxid: 9606) |
| >sp|Q91ZR2|SNX18_MOUSE Sorting nexin-18 OS=Mus musculus GN=Snx18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 161/291 (55%), Gaps = 19/291 (6%)
Query: 51 LVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110
L A +A++ + E Q GR+EE FI R+ L +++++ HPVL + V+QHF
Sbjct: 309 LYARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHF 368
Query: 111 ITC---TDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISHFN-LEQETESCSRFIHGL 166
+TC TDEK WK GKR AEKD ++G + FL + TP + +E + + F +
Sbjct: 369 LTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKIDGFKCFTKKM 428
Query: 167 DSAVKSLVAVVADQTKKCQTLYKREYQKIG-----------IDRS----HLRDALKKTGD 211
D + L + +K T +K+EYQK+G +D+ L A+ TGD
Sbjct: 429 DDSALQLNHTANEFARKQVTGFKKEYQKVGQSFRGLSQAFELDQQAFSVGLNQAIAFTGD 488
Query: 212 TYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKM 271
Y+ +G+LF EQP+ D +P+ D+L +Y+G + + PDI+ + K L K +E + E KM
Sbjct: 489 AYDAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESRRHVEEGKM 548
Query: 272 EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 322
E + + R +T+S+A L EI+HFHQ +V + M+ FL +QI F+QK
Sbjct: 549 EVQKADGIQDRCNTISFATLAEIHHFHQIRVRDFKSQMQHFLQQQIIFFQK 599
|
May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Stimulates the GTPase activity of DNM2. Promotes DNM2 location at the plasma membrane. Mus musculus (taxid: 10090) |
| >sp|Q6NRL2|SNX33_XENLA Sorting nexin-33 OS=Xenopus laevis GN=snx33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 15/269 (5%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FI+ RK +L ++D++ HPVL + +QHF+ C DEK+WKAGKR AE+
Sbjct: 267 EKQATGRFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLGCQDEKQWKAGKRRAER 326
Query: 129 DNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 188
D L+G S L ++ P ++E+ + F +D +V L +VV++ +K +
Sbjct: 327 DELVGASFLLTLQLPTEHQDLQDVEERVDVFKAFSKKMDESVLQLSSVVSELARKHLGGF 386
Query: 189 KREYQKIG-----------IDRSH----LRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233
++E+QK+G +D + L A+ TG TY +G++F EQPK D D
Sbjct: 387 RKEFQKLGAAFQGLSHSFQLDPPYSSEPLVGAISHTGRTYEAVGEMFAEQPKNDQFRFLD 446
Query: 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGE 293
L +Y+G++++ PDI+ L K K ++ ++M+ E +ME + V KR V +AL E
Sbjct: 447 TLSLYQGLLSNFPDIIHLQKGAFAKVKDSQRMSDEGRMEQDEADGVRKRCRVVGFALQAE 506
Query: 294 INHFHQEQVSQINAAMKSFLTEQINFYQK 322
INHFHQ ++ A++ +L EQI FY++
Sbjct: 507 INHFHQRRLLDFKQAIQHYLKEQIIFYRR 535
|
Xenopus laevis (taxid: 8355) |
| >sp|Q28GP7|SNX33_XENTR Sorting nexin-33 OS=Xenopus tropicalis GN=snx33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 155/269 (57%), Gaps = 15/269 (5%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FI+ RK +L ++D++ HPVL + +QHF++C DEK+WKAGKR AE+
Sbjct: 266 EKQATGRFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLSCQDEKQWKAGKRRAER 325
Query: 129 DNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 188
D L+G S L ++ P ++E+ + F +D V L +VV++ +K +
Sbjct: 326 DELVGASFLLTLQLPTEHQDLQDVEERVDVFKAFSKKMDENVLQLSSVVSELARKHLGGF 385
Query: 189 KREYQKIG-----------IDRSH----LRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233
++E+Q++G +D + L A+ TG TY +G++F EQPK D D
Sbjct: 386 RKEFQRLGAALQGLSHSFQLDPPYSSEPLVGAISHTGRTYEAVGEMFAEQPKNDQFRFLD 445
Query: 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGE 293
L +Y+G++++ PDI+ L K K +E ++M+ E +ME + + KR V +AL E
Sbjct: 446 TLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMEQDEADGIRKRCRVVGFALQAE 505
Query: 294 INHFHQEQVSQINAAMKSFLTEQINFYQK 322
INHFHQ ++ A++ +L EQI FY++
Sbjct: 506 INHFHQRRLQDFKQAIQHYLKEQILFYRR 534
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q4VAA7|SNX33_MOUSE Sorting nexin-33 OS=Mus musculus GN=Snx33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 148/269 (55%), Gaps = 15/269 (5%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FIE RK +L ++D++ HPVL + +QHF++C D+K+WK GKR AEK
Sbjct: 291 EKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEK 350
Query: 129 DNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 188
D ++G S L + P ++E ++ F +D +V L V A+ +K +
Sbjct: 351 DEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSNVAAELVRKHVGGF 410
Query: 189 KREYQKIG---------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233
++E+QK+G L +A+ TG TY +G++F EQPK D + D
Sbjct: 411 RKEFQKLGSAFQAISHAFQMDPPFRSDALNNAISHTGRTYETVGEMFAEQPKHDLFQMLD 470
Query: 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGE 293
L +Y+G++++ PDI+ L K K +E ++M+ E +M + +R V +AL E
Sbjct: 471 TLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMAQEEADGIRRRCRVVGFALQAE 530
Query: 294 INHFHQEQVSQINAAMKSFLTEQINFYQK 322
+NHFHQ + M+S+L +QI FYQ+
Sbjct: 531 MNHFHQRRELDFKHMMQSYLRQQILFYQR 559
|
Mus musculus (taxid: 10090) |
| >sp|Q8WV41|SNX33_HUMAN Sorting nexin-33 OS=Homo sapiens GN=SNX33 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 150/269 (55%), Gaps = 15/269 (5%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FIE RK +L ++D++ HPVL + +QHF++C D+K+WK GKR AEK
Sbjct: 291 EKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEK 350
Query: 129 DNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 188
D ++G S L + P ++E ++ F +D +V L V ++ +K +
Sbjct: 351 DEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGF 410
Query: 189 KREYQKIG-----IDRSH----------LRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233
++E+QK+G I S L A+ TG TY +G++F EQPK D + D
Sbjct: 411 RKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLD 470
Query: 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGE 293
L +Y+G++++ PDI+ L K K +E ++M+ E +M + + +R V +AL E
Sbjct: 471 TLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAE 530
Query: 294 INHFHQEQVSQINAAMKSFLTEQINFYQK 322
+NHFHQ + M+++L +QI FYQ+
Sbjct: 531 MNHFHQRRELDFKHMMQNYLRQQILFYQR 559
|
Homo sapiens (taxid: 9606) |
| >sp|Q96RF0|SNX18_HUMAN Sorting nexin-18 OS=Homo sapiens GN=SNX18 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 19/222 (8%)
Query: 51 LVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110
L A +A++ + E Q GR+EE FI R+ L +++++ HPVL + V+QHF
Sbjct: 319 LYARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHF 378
Query: 111 ITC---TDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISHFN-LEQETESCSRFIHGL 166
+TC TDEK WK GKR AEKD ++G + FL + TP + +E + + F +
Sbjct: 379 LTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKIDGFKCFTKKM 438
Query: 167 DSAVKSLVAVVADQTKKCQTLYKREYQKIG-----------IDRS----HLRDALKKTGD 211
D + L + +K T +K+EYQK+G +D+ L A+ TGD
Sbjct: 439 DDSALQLNHTANEFARKQVTGFKKEYQKVGQSFRGLSQAFELDQQAFSVGLNQAIAFTGD 498
Query: 212 TYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHK 253
Y+ +G+LF EQP+ D +P+ D+L +Y+G + + PDI+ + K
Sbjct: 499 AYDAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQK 540
|
May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Stimulates the GTPase activity of DNM2. Promotes DNM2 location at the plasma membrane. Homo sapiens (taxid: 9606) |
| >sp|P0CR62|SNX4_CRYNJ Sorting nexin-4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SNX4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 66 YKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGK 123
++ EY K R+ +F+E R+ LQ F D + RHPVL RS + F+ T+ W K
Sbjct: 159 HRLEYIKGDRFSPEFVERRRLDLQRFADRIARHPVLQRSQLVNDFLQSTE---WSVAK 213
|
Required for cytoplasm to vacuole transport (Cvt) and pexophagy. Involved in the fusion between the pexophagosome and the vacuole. Also involved in the separation or division of vacuoles throughout the entire life cycle of the cells. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CR63|SNX4_CRYNB Sorting nexin-4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SNX4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 66 YKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGK 123
++ EY K R+ +F+E R+ LQ F D + RHPVL RS + F+ T+ W K
Sbjct: 159 HRLEYIKGDRFSPEFVERRRLDLQRFADRIARHPVLQRSQLVNDFLQSTE---WSVAK 213
|
Required for cytoplasm to vacuole transport (Cvt) and pexophagy. Involved in the fusion between the pexophagosome and the vacuole. Also involved in the separation or division of vacuoles throughout the entire life cycle of the cells. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| 380030770 | 538 | PREDICTED: sorting nexin-9-like [Apis fl | 0.651 | 0.475 | 0.575 | 1e-84 | |
| 110764291 | 537 | PREDICTED: sorting nexin-9-like isoform | 0.651 | 0.476 | 0.571 | 8e-84 | |
| 242003995 | 540 | Sorting nexin-9, putative [Pediculus hum | 0.717 | 0.522 | 0.506 | 4e-83 | |
| 350407664 | 532 | PREDICTED: sorting nexin-9-like [Bombus | 0.648 | 0.479 | 0.560 | 3e-82 | |
| 340717528 | 532 | PREDICTED: sorting nexin-9-like [Bombus | 0.648 | 0.479 | 0.557 | 1e-81 | |
| 156553544 | 534 | PREDICTED: sorting nexin-9-like [Nasonia | 0.651 | 0.479 | 0.549 | 3e-81 | |
| 307204035 | 573 | Sorting nexin-33 [Harpegnathos saltator] | 0.651 | 0.446 | 0.538 | 7e-80 | |
| 332023810 | 536 | Sorting nexin-9 [Acromyrmex echinatior] | 0.651 | 0.477 | 0.535 | 1e-79 | |
| 383856350 | 535 | PREDICTED: sorting nexin-9-like [Megachi | 0.651 | 0.478 | 0.531 | 4e-79 | |
| 322785353 | 315 | hypothetical protein SINV_10319 [Solenop | 0.651 | 0.812 | 0.535 | 1e-78 |
| >gi|380030770|ref|XP_003699015.1| PREDICTED: sorting nexin-9-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/271 (57%), Positives = 194/271 (71%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VW+HFITCTDEKRWKAGKR AEKD LLG
Sbjct: 262 GRYEEQFIEHRRTQLQEFVDYVCRHPVLARSRVWEHFITCTDEKRWKAGKRQAEKDELLG 321
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F AI+ PE ++ +E +T++ SRFI GLD VK+ +A+ DQTKK Q LYKRE+Q
Sbjct: 322 VNYFNAIQCPETTLDVIKVEIQTDTFSRFISGLDPVVKNFMAMAVDQTKKNQVLYKREFQ 381
Query: 194 KIG--------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KIG R L ALK TGD YN++GKL+EEQPK DWEPL D HIYK
Sbjct: 382 KIGQSFNALSHALEGDDSSRGRLTYALKVTGDAYNDIGKLYEEQPKFDWEPLADKFHIYK 441
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII+S PD++ +HK + K+++YEK+ +E+KME +L+++ RTD ++ ALL E HF
Sbjct: 442 GIISSFPDVISIHKTAVQKRKDYEKLVSEHKMEPQQLRDLSHRTDVIARALLAEEMHFQT 501
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
EQ + MK+ LTEQINFYQK I++K RE
Sbjct: 502 EQEIYLTQTMKTHLTEQINFYQK-IVDKLRE 531
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110764291|ref|XP_397270.3| PREDICTED: sorting nexin-9-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/271 (57%), Positives = 193/271 (71%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VW+HFITCTDEKRWKAGKR AEKD LLG
Sbjct: 261 GRYEEQFIEHRRTQLQEFVDYVCRHPVLARSRVWEHFITCTDEKRWKAGKRQAEKDELLG 320
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F AI+ PE ++ +E +T++ SRFI GLD VK+ +A+ DQTKK Q LYKRE+Q
Sbjct: 321 VNYFNAIQCPETTLDVIKVEIQTDTFSRFISGLDPVVKNFMAMAVDQTKKNQVLYKREFQ 380
Query: 194 KIG--------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KIG R L ALK TGD YN++GKL+EEQPK DWEPL D HIYK
Sbjct: 381 KIGQSFNALSHALEGDDSSRGRLTYALKVTGDAYNDIGKLYEEQPKFDWEPLADKFHIYK 440
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII S PD++ +HK + K+++YEK+ +E+KME +L+++ RTD ++ ALL E HF
Sbjct: 441 GIINSFPDVISIHKTAVQKRKDYEKLVSEHKMEPQQLRDLSHRTDVIARALLAEEMHFQT 500
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
EQ + MK+ LTEQI+FYQK I++K RE
Sbjct: 501 EQEIYLTQTMKTHLTEQISFYQK-IVDKLRE 530
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242003995|ref|XP_002422934.1| Sorting nexin-9, putative [Pediculus humanus corporis] gi|212505833|gb|EEB10196.1| Sorting nexin-9, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 209/314 (66%), Gaps = 32/314 (10%)
Query: 45 DSAVKSLVAVVADQTKKCQTLYKREYQKI--------------GRYEEQFIEHRKNQLQS 90
+S ++ L + +A Q K L++R +K GRYEEQFIEHRK QLQ+
Sbjct: 219 ESKLRGLKSFIAYQYKHFDWLHERLEEKFSIIPIPPLPDKQISGRYEEQFIEHRKTQLQA 278
Query: 91 FVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISHF 150
FV+ VCRHP+L RS VW HFITCTDEK+WK GKR AE+D L+G FLA+ PE+ + F
Sbjct: 279 FVNCVCRHPILSRSSVWNHFITCTDEKQWKLGKRKAERDELVGAKFFLALNAPEKELETF 338
Query: 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG-----------ID- 198
+EQETE CS+FI +D+++K L + DQTKK Q LYK++Y+KIG +D
Sbjct: 339 IVEQETEDCSKFITAMDTSIKILSSTSYDQTKKYQGLYKKDYEKIGQAFQSLSYAFSLDK 398
Query: 199 -----RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHK 253
R +L +A+ T Y E+GK+FE+QPK DWEPLGDVLHIYKGII+S PDI+ +H+
Sbjct: 399 TPGNPRMNLTNAITTTSAIYLEIGKMFEDQPKNDWEPLGDVLHIYKGIISSFPDIINVHR 458
Query: 254 DILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFL 313
+ LNK +E E++ E KM + L++V KR D VSYALL EINHFH E+ AM+SFL
Sbjct: 459 NTLNKHKECERLAHEAKMSPSELKDVKKRADVVSYALLAEINHFHNERAVDFKGAMQSFL 518
Query: 314 TEQINFYQKDILNK 327
EQI FYQ +I++K
Sbjct: 519 AEQIKFYQ-NIVDK 531
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350407664|ref|XP_003488153.1| PREDICTED: sorting nexin-9-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 193/271 (71%), Gaps = 16/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VW+HFITCTDEKRWKAGKR AEKD LLG
Sbjct: 257 GRYEEQFIEHRRTQLQEFVDYVCRHPVLARSRVWEHFITCTDEKRWKAGKRQAEKDELLG 316
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F A++ PE ++ +E +T++ SRFI GLD VK+ +A+ DQTKK LYKRE+Q
Sbjct: 317 VNYFNAVQCPETTLDVIKVEIQTDAFSRFISGLDPVVKNFMAMAVDQTKKS-LLYKREFQ 375
Query: 194 KIG--------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KIG R L ALK TGD YN++GKL+EEQPK DWEPL D HIY+
Sbjct: 376 KIGQSFSALSHALEGDDSSRGRLTYALKITGDAYNDIGKLYEEQPKFDWEPLSDKFHIYR 435
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII+S PD++ +HK + K+++YE++ +E+KME +L+++ RTD ++ ALL E HF
Sbjct: 436 GIISSFPDVISIHKTAVQKRKDYERLVSEHKMEPQQLRDLSHRTDVIARALLAEETHFQT 495
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
EQ + AMK+ LTEQI FYQK I++K RE
Sbjct: 496 EQEIHLTQAMKTHLTEQIKFYQK-IVDKLRE 525
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717528|ref|XP_003397233.1| PREDICTED: sorting nexin-9-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 192/271 (70%), Gaps = 16/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VW+HFITCTDEKRWKAGKR AEKD LLG
Sbjct: 257 GRYEEQFIEHRRTQLQEFVDYVCRHPVLARSRVWEHFITCTDEKRWKAGKRQAEKDELLG 316
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F A++ PE ++ +E +T++ SRFI GLD VK+ +A+ DQTKK LYKRE+Q
Sbjct: 317 VNYFNAVQCPETTLDVIKVEIQTDAFSRFISGLDPVVKNFMAMAVDQTKKS-LLYKREFQ 375
Query: 194 KIG--------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KIG R L ALK TGD YN++GKL+EEQPK DWEPL D HIY+
Sbjct: 376 KIGQSFSALSHALEGDDSSRGRLTYALKITGDAYNDIGKLYEEQPKFDWEPLSDKFHIYR 435
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII+S PD++ +HK + K+++YE++ +E+KME +L+++ RTD ++ ALL E HF
Sbjct: 436 GIISSFPDVISIHKTAVQKRKDYERLVSEHKMEPQQLRDLSHRTDVIARALLAEETHFQT 495
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
EQ + AMK+ L EQI FYQK I++K RE
Sbjct: 496 EQEIHLTQAMKTHLAEQIKFYQK-IVDKLRE 525
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156553544|ref|XP_001601721.1| PREDICTED: sorting nexin-9-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 189/273 (69%), Gaps = 17/273 (6%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VWQHFITCTDEKRWKAGKR AEKD LG
Sbjct: 257 GRYEEQFIEHRRTQLQEFVDYVCRHPVLSRSRVWQHFITCTDEKRWKAGKRAAEKDEFLG 316
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F ++ P+ + +E +T++ +RFI GLD VKS +A+ DQ KK Q LYKRE+Q
Sbjct: 317 VTYFHGVQCPDTPLDAIKVEFQTDAFARFIAGLDPVVKSFMAMATDQAKKHQVLYKREFQ 376
Query: 194 KI----------------GIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHI 237
KI G R L ALK TG+ YNE+GKL+EEQPK DWEPL D HI
Sbjct: 377 KIGQCFVSLGNALEADDAGRSRHTLNQALKDTGEAYNEIGKLYEEQPKYDWEPLADKFHI 436
Query: 238 YKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHF 297
Y+GII+S PD++G+HK + K+++ E++ E+KME+ +L+E+ RTD ++ AL E HF
Sbjct: 437 YRGIISSFPDVIGIHKSAVQKRKDCERLVNEHKMESAQLRELNHRTDVIARALGAEETHF 496
Query: 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
E+ I AMKS L EQINFYQK I++K +E
Sbjct: 497 QSEREIHITQAMKSHLVEQINFYQK-IVDKLQE 528
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307204035|gb|EFN82939.1| Sorting nexin-33 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/271 (53%), Positives = 191/271 (70%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHPVL RS VW+HF+TCTDEKRWKAGKR AEKD LLG
Sbjct: 297 GRYEEQFIEHRRTQLQEFVDYVCRHPVLSRSRVWEHFMTCTDEKRWKAGKRQAEKDELLG 356
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F AI+ P+ S+ +E +T++ RFI GLD VK+ +A+ DQ KK Q LY+RE+Q
Sbjct: 357 VNYFNAIQCPDASLDAIKMEIQTDTFGRFISGLDPVVKNFMAMSVDQAKKHQVLYRREFQ 416
Query: 194 KIGI--------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KI R L ALK TGD YN++GKL+EEQPK DWEPL D HIY+
Sbjct: 417 KISQSFTSLGHALEADDNSRGKLTRALKATGDAYNDIGKLYEEQPKFDWEPLADKFHIYR 476
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII++ PD++ +HK + K+++ E++ +E+KME +L+E+ RTD ++ AL+ E HF
Sbjct: 477 GIISNFPDVISIHKSAVQKRKDCERLVSEHKMEPQQLRELSHRTDVIARALVAEEIHFQT 536
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
E+ IN A+K+ LTEQI FYQK I++K +E
Sbjct: 537 EREVHINKAIKTHLTEQIAFYQK-IVDKLQE 566
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023810|gb|EGI64034.1| Sorting nexin-9 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 191/271 (70%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYE+ FIEHR+ QLQ FVDYVCRHPVL RS VWQHFITCTDEKRWKAGKR AEKD LLG
Sbjct: 260 GRYEDAFIEHRRTQLQEFVDYVCRHPVLSRSRVWQHFITCTDEKRWKAGKRQAEKDELLG 319
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F AI++P+ + +E +T++ ++FI+GLD VK+ +A+ DQ KK Q LYKRE+Q
Sbjct: 320 VNYFNAIQSPDTPLDIIKMELQTDAFNKFINGLDPVVKNFMAMAVDQAKKHQVLYKREFQ 379
Query: 194 KIGID--------------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KI R L ALK TGD YN++GKL+EEQPK DWEPL D HIY+
Sbjct: 380 KISQSFTSLSHALEADDNGRGKLTRALKATGDAYNDIGKLYEEQPKFDWEPLSDKFHIYR 439
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII++ PD+ +HK + K+R+ E++ +E+KME +L+++ RTD ++ AL+ E HF
Sbjct: 440 GIISNFPDVTSIHKSAMQKRRDCERLVSEHKMEPQQLRDLSHRTDVIARALIAEEIHFQT 499
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
E+ +N A+++ LTEQI FYQK I+NK RE
Sbjct: 500 EREVHVNKAVRTHLTEQIAFYQK-IVNKLRE 529
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856350|ref|XP_003703672.1| PREDICTED: sorting nexin-9-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 144/271 (53%), Positives = 191/271 (70%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQFIEHR+ QLQ FVDYVCRHP+L RS VW+HFITCTDEK+WKAGKR AEKD LLG
Sbjct: 259 GRYEEQFIEHRRTQLQEFVDYVCRHPILARSRVWEHFITCTDEKKWKAGKRQAEKDELLG 318
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F A++ PE ++ +E +T++ SRFI GLD VK+ +A+ DQTKK Q LYKRE+Q
Sbjct: 319 VNYFNAVQCPETNLDVIKVEIQTDAFSRFISGLDPVVKNFMAMAVDQTKKHQVLYKREFQ 378
Query: 194 KIG--------------IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KIG R L ALK TGD YN++G+L+EEQPK DWEPL D HIY+
Sbjct: 379 KIGQSFSALSHALESDDSSRGKLTYALKVTGDAYNDIGRLYEEQPKFDWEPLSDKFHIYR 438
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII+S PD++ +HK + K+++ E++ +E+KME +L+++ RTD ++ +L E HF
Sbjct: 439 GIISSFPDVINIHKTAVQKRKDCERLVSEHKMEPQQLRDLSHRTDIIARTVLAEETHFQT 498
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
E+ + AMK+ L EQI FYQK I+++ RE
Sbjct: 499 EKEIHLTQAMKNHLAEQIMFYQK-IVDRLRE 528
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322785353|gb|EFZ12027.1| hypothetical protein SINV_10319 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 187/271 (69%), Gaps = 15/271 (5%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYE+ FIEHR+ QLQ FVDYVCRHPVL RS VW+HFITCTDEKRWKAGKR AEKD LLG
Sbjct: 39 GRYEDAFIEHRRTQLQEFVDYVCRHPVLSRSRVWEHFITCTDEKRWKAGKRQAEKDELLG 98
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ F AI+ P+ + +E +T++ RFI GLD VK+ +A+ DQ KK Q LYKRE+Q
Sbjct: 99 VNYFNAIQCPDTPLDVIKMEIQTDAFVRFISGLDPVVKNFMAMAVDQAKKHQVLYKREFQ 158
Query: 194 KIGID--------------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239
KI R L ALK TGD YN++GKL+E+QPK DWEPL D HIY+
Sbjct: 159 KISQSFTSLSHALEADDNGRGRLTRALKATGDAYNDIGKLYEDQPKFDWEPLSDKFHIYR 218
Query: 240 GIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299
GII+S PD+ +HK + K+R+ E+M +E+KME +L+++ RTD ++ AL+ E HF
Sbjct: 219 GIISSFPDVTSIHKSAMQKRRDCERMVSEHKMEQQQLRDLSHRTDVIARALIAEETHFQM 278
Query: 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
E+ I A+++ LTEQI FYQK I++K RE
Sbjct: 279 EREVHIKQAVRTHLTEQIAFYQK-IVDKLRE 308
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| FB|FBgn0040475 | 565 | SH3PX1 "SH3PX1" [Drosophila me | 0.338 | 0.235 | 0.481 | 3e-58 | |
| UNIPROTKB|I3LSD1 | 590 | SNX9 "Uncharacterized protein" | 0.659 | 0.438 | 0.367 | 4.8e-46 | |
| MGI|MGI:1913866 | 595 | Snx9 "sorting nexin 9" [Mus mu | 0.659 | 0.435 | 0.363 | 1.3e-45 | |
| UNIPROTKB|F1N6W6 | 592 | SNX9 "Uncharacterized protein" | 0.659 | 0.437 | 0.367 | 2.7e-45 | |
| UNIPROTKB|G3MZ54 | 660 | SNX9 "Uncharacterized protein" | 0.659 | 0.392 | 0.367 | 2.7e-45 | |
| UNIPROTKB|B3KXH8 | 395 | SNX9 "cDNA FLJ45417 fis, clone | 0.659 | 0.655 | 0.36 | 5.6e-45 | |
| UNIPROTKB|Q9Y5X1 | 595 | SNX9 "Sorting nexin-9" [Homo s | 0.659 | 0.435 | 0.36 | 5.6e-45 | |
| UNIPROTKB|F1PBG7 | 592 | SNX9 "Uncharacterized protein" | 0.659 | 0.437 | 0.36 | 7.1e-45 | |
| UNIPROTKB|E1BTY4 | 600 | SNX9 "Uncharacterized protein" | 0.659 | 0.431 | 0.349 | 3.9e-44 | |
| ZFIN|ZDB-GENE-031118-50 | 608 | snx9b "sorting nexin 9b" [Dani | 0.669 | 0.432 | 0.364 | 1.7e-43 |
| FB|FBgn0040475 SH3PX1 "SH3PX1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 3.0e-58, Sum P(2) = 3.0e-58
Identities = 64/133 (48%), Positives = 92/133 (69%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLG 133
GRYEEQF+EHR+ QLQ FVD+VCRHPV+ + VW HF+TC DEK WK+GKR AE+D +G
Sbjct: 285 GRYEEQFVEHRRVQLQEFVDWVCRHPVISKCEVWYHFLTCRDEKIWKSGKRKAERDPYMG 344
Query: 134 PSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193
+ LAI P++++ H ++ + E ++FIH +D AV++L + D K+ + K+E+Q
Sbjct: 345 VNYCLAISPPDKNLLHSKVDAQVELGTQFIHSMDVAVRNLNNISNDMAKRSMSQSKKEFQ 404
Query: 194 KIGIDRSHLRDAL 206
+IG S L AL
Sbjct: 405 RIGDGLSDLAKAL 417
|
|
| UNIPROTKB|I3LSD1 SNX9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 101/275 (36%), Positives = 152/275 (55%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 309 QVTGRFEEEFIKMRMERLQAWMSRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDE 368
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 369 LVGVMVFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 428
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 429 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 488
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 489 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMN 548
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q+ FY+ I K R+
Sbjct: 549 HFHSNRIYDYNSVIRLYLEQQVQFYET-IAEKLRQ 582
|
|
| MGI|MGI:1913866 Snx9 "sorting nexin 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 100/275 (36%), Positives = 152/275 (55%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 314 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDE 373
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ ++ +F +D VK L+ V + K+C +
Sbjct: 374 LVGVMIFSTMEPEAPDLDLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 433
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 434 EYQKIGKALQSLAAVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 493
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 494 HEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMN 553
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q+ FY+ I K R+
Sbjct: 554 HFHSNRIYDYNSVIRLYLEQQVQFYET-IAEKLRQ 587
|
|
| UNIPROTKB|F1N6W6 SNX9 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 101/275 (36%), Positives = 151/275 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 311 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDE 370
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ ++ +F +D VK L+ V + K+C +
Sbjct: 371 LVGVMIFSTMEPEAPDLDLVEIEQKCDAVGKFTKAMDDGVKELLNVGQEHWKRCTGPLPK 430
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 431 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 490
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDILG HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 491 HEYKGFLGCFPDILGAHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMN 550
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q FY+ I K R+
Sbjct: 551 HFHSNRIYDYNSVIRLYLEQQAQFYET-IAQKLRQ 584
|
|
| UNIPROTKB|G3MZ54 SNX9 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 101/275 (36%), Positives = 151/275 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 379 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDE 438
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ ++ +F +D VK L+ V + K+C +
Sbjct: 439 LVGVMIFSTMEPEAPDLDLVEIEQKCDAVGKFTKAMDDGVKELLNVGQEHWKRCTGPLPK 498
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 499 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 558
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDILG HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 559 HEYKGFLGCFPDILGAHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMN 618
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q FY+ I K R+
Sbjct: 619 HFHSNRIYDYNSVIRLYLEQQAQFYET-IAQKLRQ 652
|
|
| UNIPROTKB|B3KXH8 SNX9 "cDNA FLJ45417 fis, clone BRHIP3033811, highly similar to Sorting nexin-9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 99/275 (36%), Positives = 150/275 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 114 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 173
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 174 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 233
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 234 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 293
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 294 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 353
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q+ FY+ I K R+
Sbjct: 354 HFHSNRIYDYNSVIRLYLEQQVQFYET-IAEKLRQ 387
|
|
| UNIPROTKB|Q9Y5X1 SNX9 "Sorting nexin-9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 99/275 (36%), Positives = 150/275 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 314 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 373
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 374 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 433
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 434 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 493
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 494 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 553
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q+ FY+ I K R+
Sbjct: 554 HFHSNRIYDYNSVIRLYLEQQVQFYET-IAEKLRQ 587
|
|
| UNIPROTKB|F1PBG7 SNX9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 99/275 (36%), Positives = 152/275 (55%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S ++Q F+ DEK WK+GKR AEKD
Sbjct: 311 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESELFQQFLNFRDEKEWKSGKRKAEKDE 370
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L+G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 371 LVGVMIFSTMEPEAPDLDLLEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 430
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L A+ + G TY E+ L EQPK D L +
Sbjct: 431 EYQKIGKALQSLATVFSSSGYQGETDLNAAITEAGKTYEEIAGLVAEQPKKDLHFLMECN 490
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR T+SYAL E+N
Sbjct: 491 HEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMN 550
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q+ FY+ I K R+
Sbjct: 551 HFHSNRIYDYNSVIRLYLEQQVQFYET-IAEKLRQ 584
|
|
| UNIPROTKB|E1BTY4 SNX9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 96/275 (34%), Positives = 150/275 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHP++ S V+Q F+ DEK WK GKR AEKD
Sbjct: 319 QVTGRFEEEFIKMRMERLQAWMTRMCRHPIVSESEVFQQFLNFRDEKEWKTGKRKAEKDE 378
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
+G +F +E + +EQ+ ++ RF +D VK L+ V + K+C +
Sbjct: 379 TVGVMIFSTMEPEAPDLDMVEIEQKCDAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPK 438
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG S L +A+ + G TY E+ L +QPK D L +
Sbjct: 439 EYQKIGKALQSLALVFSTSGYQGESDLNEAITEAGKTYEEIASLVADQPKKDLHFLMETN 498
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + + +E +K+ +K+ Q ++KR T++YAL E+N
Sbjct: 499 HEYKGFLGCFPDIIGAHKGAIERVKESDKLVATSKITPQDKQNMVKRVSTMAYALQAEMN 558
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330
HFH ++ N+ ++ +L +Q FY+ I K R+
Sbjct: 559 HFHSNRIYDYNSVIRLYLEQQAQFYET-IAQKLRQ 592
|
|
| ZFIN|ZDB-GENE-031118-50 snx9b "sorting nexin 9b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 104/285 (36%), Positives = 156/285 (54%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ ++ +CRHPV+ S V+Q F++ DEK WK GKR AEKD
Sbjct: 326 QVTGRFEEEFIKMRMERLQGWMSRMCRHPVVSSSEVFQLFLSYKDEKDWKTGKRKAEKDE 385
Query: 131 LLGPSLFLAIET---PERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 187
+G +F IE P+ + +EQ+ E SRF +D VK L+ V + K+C
Sbjct: 386 TVGVMIFSTIEPEGLPDMDL--IEVEQKCEQFSRFTKAMDDGVKDLLTVGNEHWKRCTGP 443
Query: 188 YKREYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLG 232
+EYQ+IG L DA+ G TY E+ ++ EQPK D L
Sbjct: 444 LPKEYQRIGKAFQNLSSVFTTSGYEGEGTLTDAMTAAGKTYEEIAQMVAEQPKKDLHFLM 503
Query: 233 DVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLG 292
+ + YKG++ PD +G+HK + K +E +K+ T K+ A+ + KR T+SYAL
Sbjct: 504 ETNNEYKGLLGCFPDTIGVHKAAIEKVKEADKLVTAGKITASDKTTMGKRASTMSYALQA 563
Query: 293 EINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE-YEKMTT 336
E+NHFH ++ N M+ +L +Q+ FY+ I K R+ + + TT
Sbjct: 564 EMNHFHNNRIYDYNRVMQQYLEQQVKFYEM-IAEKLRQAHSQFTT 607
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 393 | |||
| cd07626 | 199 | cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (B | 3e-68 | |
| pfam10456 | 237 | pfam10456, BAR_3_WASP_bdg, WASP-binding domain of | 4e-55 | |
| cd07668 | 210 | cd07668, BAR_SNX9, The Bin/Amphiphysin/Rvs (BAR) d | 7e-33 | |
| cd07670 | 207 | cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) | 2e-29 | |
| cd07669 | 207 | cd07669, BAR_SNX33, The Bin/Amphiphysin/Rvs (BAR) | 8e-28 | |
| cd06862 | 125 | cd06862, PX_SNX9_18_like, The phosphoinositide bin | 1e-27 | |
| cd07626 | 199 | cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (B | 3e-21 | |
| cd07286 | 127 | cd07286, PX_SNX18, The phosphoinositide binding Ph | 1e-16 | |
| cd07285 | 126 | cd07285, PX_SNX9, The phosphoinositide binding Pho | 5e-15 | |
| cd07670 | 207 | cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) | 2e-12 | |
| cd07626 | 199 | cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (B | 1e-11 | |
| cd07669 | 207 | cd07669, BAR_SNX33, The Bin/Amphiphysin/Rvs (BAR) | 2e-10 | |
| cd07596 | 218 | cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) do | 3e-07 | |
| pfam00787 | 109 | pfam00787, PX, PX domain | 7e-07 | |
| cd06861 | 112 | cd06861, PX_Vps5p, The phosphoinositide binding Ph | 1e-06 | |
| cd06863 | 118 | cd06863, PX_Atg24p, The phosphoinositide binding P | 3e-06 | |
| cd06866 | 105 | cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide | 3e-05 | |
| cd06859 | 114 | cd06859, PX_SNX1_2_like, The phosphoinositide bind | 4e-05 | |
| cd07668 | 210 | cd07668, BAR_SNX9, The Bin/Amphiphysin/Rvs (BAR) d | 8e-04 | |
| cd06093 | 106 | cd06093, PX_domain, The Phox Homology domain, a ph | 0.001 | |
| smart00312 | 105 | smart00312, PX, PhoX homologous domain, present in | 0.003 | |
| pfam10456 | 237 | pfam10456, BAR_3_WASP_bdg, WASP-binding domain of | 0.004 |
| >gnl|CDD|153310 cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 3e-68
Identities = 81/187 (43%), Positives = 119/187 (63%), Gaps = 15/187 (8%)
Query: 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG-------------- 196
++EQ+ ++ +F+ +D +VK+L+ + +Q KK Q YK+EYQKIG
Sbjct: 1 DVEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDE 60
Query: 197 -IDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDI 255
L A+K TG Y E+G+LF EQPK D PL D LH YKG++++ PDI+G+HK
Sbjct: 61 TPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGA 120
Query: 256 LNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTE 315
+ K +E E++ E KM + L+EV +RTD +SYALL EINHFH+E+V + M+++L +
Sbjct: 121 VQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQ 180
Query: 316 QINFYQK 322
QI FYQK
Sbjct: 181 QIEFYQK 187
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 199 |
| >gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin protein | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-55
Identities = 90/224 (40%), Positives = 128/224 (57%), Gaps = 16/224 (7%)
Query: 115 DEKRWKAGKRMAEKDNLLGPSLFLAIETPER-SISHFNLEQETESCSRFIHGLDSAVKSL 173
DEK WK GKR AEKD L+G + FL IE PE + +EQ+ E RF +D VK L
Sbjct: 1 DEKAWKQGKRKAEKDELVGANFFLTIEVPEAPPLDLQEVEQKVEGFKRFTKKMDEGVKVL 60
Query: 174 VAVVADQTKKCQTLYKREYQKIG-----------ID----RSHLRDALKKTGDTYNELGK 218
+ V + KKC +K+EYQKIG +D + L +A+ TG TY E+G+
Sbjct: 61 LTVGNEFWKKCAGPFKKEYQKIGKAFQLLSQAFEMDGYVGSAGLNEAIAATGKTYEEIGE 120
Query: 219 LFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQE 278
+F EQPK D PL + L YKG++ + PDI+ +HK + K +E +K+ E K+
Sbjct: 121 MFAEQPKKDLHPLLETLAEYKGLLGNFPDIIHVHKGAITKVKESDKLVEEGKISQQDAST 180
Query: 279 VLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 322
+ KR + +SYAL E+NHFH ++ + M+ +L +QI FYQK
Sbjct: 181 MKKRCNIMSYALQAEMNHFHSNRIYDFKSQMQHYLEQQIKFYQK 224
|
The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with family PX, pfam00787.13, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex. Length = 237 |
| >gnl|CDD|153352 cd07668, BAR_SNX9, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Score = 122 bits (306), Expect = 7e-33
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 15/185 (8%)
Query: 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------------- 197
+EQ+ E+ RF +D VK L+ V + K+C +EYQKIG
Sbjct: 10 IEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGY 69
Query: 198 -DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDIL 256
+ L DA+ + G TY E+ L EQPK D L + H YKG + PDI+G HK +
Sbjct: 70 QGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAI 129
Query: 257 NKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQ 316
K +E +K+ +K+ Q ++KR T+SYAL E+NHFH ++ N+ ++ +L +Q
Sbjct: 130 EKVKESDKLVATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQ 189
Query: 317 INFYQ 321
+ FY+
Sbjct: 190 VQFYE 194
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 210 |
| >gnl|CDD|153354 cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 2e-29
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 162 FIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG-----------IDRSH----LRDAL 206
F +D +V L + +K T +K+EYQK+G +D+ L A+
Sbjct: 20 FTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAI 79
Query: 207 KKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMT 266
TG+ Y +G+LF EQP+ D +P+ D+L +Y+G + + PDI+ + K L K +E +K
Sbjct: 80 AFTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESKKHV 139
Query: 267 TENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 322
E KME + + R + +S+A L EI+HFH+ +V + M+ FL +QI F+QK
Sbjct: 140 EEGKMELQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQK 195
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 207 |
| >gnl|CDD|153353 cd07669, BAR_SNX33, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-28
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG-----IDRSHLRD- 204
++E+ + F +D +V L V ++ +K +++E+QK+G I S D
Sbjct: 9 DVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDP 68
Query: 205 ---------ALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDI 255
A+ TG TY +G++F EQPK D + D L +Y+G++++ PDI+ L K
Sbjct: 69 PYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGA 128
Query: 256 LNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTE 315
K +E ++M+ E +M+ + + KR V +AL E+NHFHQ + M+ +L +
Sbjct: 129 FAKVKESQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQ 188
Query: 316 QINFYQK 322
QI FYQ+
Sbjct: 189 QIIFYQR 195
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 207 |
| >gnl|CDD|132772 cd06862, PX_SNX9_18_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-27
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FIE R+ +L+ +++ + RHPVL +S V++HF+TCTDEK WK+GKR AEK
Sbjct: 62 EKQVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDWKSGKRKAEK 121
Query: 129 DNLL 132
D L+
Sbjct: 122 DELV 125
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 125 |
| >gnl|CDD|153310 cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-21
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 321 QKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKS 380
K + K +E E++ E KM + L+EV +RTD +SYALL EINHFH+E+V + M++
Sbjct: 117 HKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRN 176
Query: 381 FLTEQINFYQK 391
+L +QI FYQK
Sbjct: 177 YLQQQIEFYQK 187
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 199 |
| >gnl|CDD|132819 cd07286, PX_SNX18, The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-16
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC--TDEKRWKAGKRMA 126
E Q GR+EE FI R+ L ++D++C HPVL R +QHF+TC TDEK WK GKR A
Sbjct: 62 EKQATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQGKRKA 121
Query: 127 EKDNLL 132
EKD ++
Sbjct: 122 EKDEMV 127
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 127 |
| >gnl|CDD|132818 cd07285, PX_SNX9, The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 5e-15
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AEKD
Sbjct: 65 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDE 124
Query: 131 LL 132
+
Sbjct: 125 TV 126
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. Through its SH3 domain, SNX9 binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization. Length = 126 |
| >gnl|CDD|153354 cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-12
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 321 QKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKS 380
QK L K +E +K E KME + + R + +S+A L EI+HFH+ +V + M+
Sbjct: 125 QKGALTKVKESKKHVEEGKMELQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQH 184
Query: 381 FLTEQINFYQKST 393
FL +QI F+QK T
Sbjct: 185 FLQQQIRFFQKVT 197
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 207 |
| >gnl|CDD|153310 cd07626, BAR_SNX9_like, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 29 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG 74
++EQ+ ++ +F+ +D +VK+L+ + +Q KK Q YK+EYQKIG
Sbjct: 1 DVEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIG 46
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 199 |
| >gnl|CDD|153353 cd07669, BAR_SNX33, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-10
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 321 QKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKS 380
QK K +E ++M+ E +M+ + + KR V +AL E+NHFHQ + M+
Sbjct: 125 QKGAFAKVKESQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQH 184
Query: 381 FLTEQINFYQK 391
+L +QI FYQ+
Sbjct: 185 YLRQQIIFYQR 195
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 207 |
| >gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 35/205 (17%)
Query: 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK------REYQKIG----IDRSHL 202
+QE E +I L+ +K L K+ + L + K+ L
Sbjct: 3 DQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGEL 62
Query: 203 RDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILG-----------L 251
+AL K G EL L E Q + L + L Y ++ + L L
Sbjct: 63 GEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSL 122
Query: 252 HKDILNKKREYEKMTTENKMEANRLQEVL--------------KRTDTVSYALLGEINHF 297
KD+ +KK + EK+ ++ +++E+ KR + +S L E+ F
Sbjct: 123 KKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRF 182
Query: 298 HQEQVSQINAAMKSFLTEQINFYQK 322
H+E+ + AA+K F Q+ + +K
Sbjct: 183 HEERARDLKAALKEFARLQVQYAEK 207
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218 |
| >gnl|CDD|216119 pfam00787, PX, PX domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-07
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
+ GR+ E+FIE R+ L+ ++ + +HP L S V F+
Sbjct: 66 KLFGRFSEEFIEKRRKGLEEYLQRLLQHPELSNSEVVLEFLE 107
|
PX domains bind to phosphoinositides. Length = 109 |
| >gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
E Q +GR+++ F+E R+ L+ + + HPVL + P ++ F+
Sbjct: 67 EKQSVGRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLE 110
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P). Similar to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. Length = 112 |
| >gnl|CDD|132773 cd06863, PX_Atg24p, The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 66 YKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
++ EY R+ +FI R LQ F+ + HPVL +S + F+
Sbjct: 70 HRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLE 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 118 |
| >gnl|CDD|132776 cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 78 EQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
+F+E R+ L F++ V RHPVL + + F+T
Sbjct: 69 REFLEARRRGLSRFLNLVARHPVLSEDELVRTFLT 103
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. Length = 105 |
| >gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-05
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 69 EYQKIGRYEEQ--FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
E Q +GR++ + FIE R+ L+ F+ + HPVL + P ++ F+
Sbjct: 67 EKQAVGRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRLFLE 112
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Length = 114 |
| >gnl|CDD|153352 cd07668, BAR_SNX9, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 8e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 30 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGR 75
+EQ+ E+ RF +D VK L+ V + K+C +EYQKIG+
Sbjct: 10 IEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGK 55
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 210 |
| >gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112
G + +FIE R+ QL+ ++ + HP L S + F+
Sbjct: 66 FGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106 |
| >gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 78 EQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFIT 112
E+FIE R+ L+ ++ + HP L S V F+
Sbjct: 70 EEFIEKRRRGLEKYLQSLLNHPELINHSEVVLEFLE 105
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. Length = 105 |
| >gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin protein | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 29 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIG 74
+EQ+ E RF +D VK L+ V + KKC +K+EYQKIG
Sbjct: 38 EVEQKVEGFKRFTKKMDEGVKVLLTVGNEFWKKCAGPFKKEYQKIG 83
|
The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with family PX, pfam00787.13, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex. Length = 237 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| KOG2528|consensus | 490 | 100.0 | ||
| PF10456 | 237 | BAR_3_WASP_bdg: WASP-binding domain of Sorting nex | 100.0 | |
| cd07670 | 207 | BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07669 | 207 | BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07668 | 210 | BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| cd07626 | 199 | BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain | 100.0 | |
| KOG2273|consensus | 503 | 99.95 | ||
| cd07666 | 243 | BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.94 | |
| cd07285 | 126 | PX_SNX9 The phosphoinositide binding Phox Homology | 99.94 | |
| cd07286 | 127 | PX_SNX18 The phosphoinositide binding Phox Homolog | 99.94 | |
| cd07667 | 240 | BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.92 | |
| cd07623 | 224 | BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.9 | |
| cd07665 | 234 | BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.9 | |
| cd07664 | 234 | BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.89 | |
| cd07624 | 200 | BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o | 99.88 | |
| cd06862 | 125 | PX_SNX9_18_like The phosphoinositide binding Phox | 99.87 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.85 | |
| cd07284 | 116 | PX_SNX7 The phosphoinositide binding Phox Homology | 99.84 | |
| cd07628 | 185 | BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.84 | |
| cd07294 | 132 | PX_SNX12 The phosphoinositide binding Phox Homolog | 99.83 | |
| cd07293 | 123 | PX_SNX3 The phosphoinositide binding Phox Homology | 99.83 | |
| cd07283 | 116 | PX_SNX30 The phosphoinositide binding Phox Homolog | 99.83 | |
| cd07626 | 199 | BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.82 | |
| cd07621 | 219 | BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.82 | |
| cd07663 | 218 | BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.82 | |
| cd07630 | 198 | BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.82 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 99.82 | |
| cd07622 | 201 | BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.82 | |
| cd06861 | 112 | PX_Vps5p The phosphoinositide binding Phox Homolog | 99.81 | |
| cd06894 | 123 | PX_SNX3_like The phosphoinositide binding Phox Hom | 99.81 | |
| cd07288 | 118 | PX_SNX15 The phosphoinositide binding Phox Homolog | 99.8 | |
| cd06891 | 140 | PX_Vps17p The phosphoinositide binding Phox Homolo | 99.8 | |
| cd06860 | 116 | PX_SNX7_30_like The phosphoinositide binding Phox | 99.8 | |
| cd07295 | 116 | PX_Grd19 The phosphoinositide binding Phox Homolog | 99.79 | |
| cd07282 | 124 | PX_SNX2 The phosphoinositide binding Phox Homology | 99.79 | |
| cd07662 | 218 | BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.79 | |
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 99.78 | |
| cd07598 | 211 | BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.75 | |
| cd07281 | 124 | PX_SNX1 The phosphoinositide binding Phox Homology | 99.74 | |
| cd07629 | 187 | BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.74 | |
| cd07287 | 118 | PX_RPK118_like The phosphoinositide binding Phox H | 99.73 | |
| cd06898 | 113 | PX_SNX10 The phosphoinositide binding Phox Homolog | 99.73 | |
| cd06863 | 118 | PX_Atg24p The phosphoinositide binding Phox Homolo | 99.72 | |
| cd07301 | 112 | PX_SNX21 The phosphoinositide binding Phox Homolog | 99.72 | |
| cd06881 | 117 | PX_SNX15_like The phosphoinositide binding Phox Ho | 99.71 | |
| cd06864 | 129 | PX_SNX4 The phosphoinositide binding Phox Homology | 99.71 | |
| cd06865 | 120 | PX_SNX_like The phosphoinositide binding Phox Homo | 99.71 | |
| cd07291 | 141 | PX_SNX5 The phosphoinositide binding Phox Homology | 99.7 | |
| cd07292 | 141 | PX_SNX6 The phosphoinositide binding Phox Homology | 99.69 | |
| COG5391 | 524 | Phox homology (PX) domain protein [Intracellular t | 99.69 | |
| cd07625 | 230 | BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.68 | |
| cd06859 | 114 | PX_SNX1_2_like The phosphoinositide binding Phox H | 99.66 | |
| KOG2527|consensus | 144 | 99.65 | ||
| cd06867 | 112 | PX_SNX41_42 The phosphoinositide binding Phox Homo | 99.65 | |
| cd06893 | 132 | PX_SNX19 The phosphoinositide binding Phox Homolog | 99.62 | |
| cd06866 | 105 | PX_SNX8_Mvp1p_like The phosphoinositide binding Ph | 99.6 | |
| cd06892 | 141 | PX_SNX5_like The phosphoinositide binding Phox Hom | 99.59 | |
| cd07300 | 114 | PX_SNX20 The phosphoinositide binding Phox Homolog | 99.57 | |
| cd07279 | 112 | PX_SNX20_21_like The phosphoinositide binding Phox | 99.57 | |
| cd06868 | 120 | PX_HS1BP3 The phosphoinositide binding Phox Homolo | 99.55 | |
| cd06872 | 107 | PX_SNX19_like_plant The phosphoinositide binding P | 99.53 | |
| cd07280 | 120 | PX_YPT35 The phosphoinositide binding Phox Homolog | 99.5 | |
| cd06886 | 106 | PX_SNX27 The phosphoinositide binding Phox Homolog | 99.48 | |
| cd07597 | 246 | BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.48 | |
| cd06877 | 119 | PX_SNX14 The phosphoinositide binding Phox Homolog | 99.47 | |
| cd06873 | 120 | PX_SNX13 The phosphoinositide binding Phox Homolog | 99.45 | |
| cd06879 | 138 | PX_UP1_plant The phosphoinositide binding Phox Hom | 99.45 | |
| cd06870 | 109 | PX_CISK The phosphoinositide binding Phox Homology | 99.44 | |
| cd07276 | 110 | PX_SNX16 The phosphoinositide binding Phox Homolog | 99.44 | |
| cd06897 | 108 | PX_SNARE The phosphoinositide binding Phox Homolog | 99.41 | |
| cd06871 | 120 | PX_MONaKA The phosphoinositide binding Phox Homolo | 99.4 | |
| cd06875 | 116 | PX_IRAS The phosphoinositide binding Phox Homology | 99.35 | |
| cd06885 | 104 | PX_SNX17_31 The phosphoinositide binding Phox Homo | 99.31 | |
| KOG1660|consensus | 399 | 99.28 | ||
| PF10456 | 237 | BAR_3_WASP_bdg: WASP-binding domain of Sorting nex | 99.26 | |
| cd07277 | 118 | PX_RUN The phosphoinositide binding Phox Homology | 99.24 | |
| cd06880 | 110 | PX_SNX22 The phosphoinositide binding Phox Homolog | 99.22 | |
| cd06882 | 123 | PX_p40phox The phosphoinositide binding Phox Homol | 99.2 | |
| cd06878 | 127 | PX_SNX25 The phosphoinositide binding Phox Homolog | 99.2 | |
| cd06876 | 133 | PX_MDM1p The phosphoinositide binding Phox Homolog | 99.19 | |
| cd07670 | 207 | BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.17 | |
| cd07668 | 210 | BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.16 | |
| cd07669 | 207 | BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.14 | |
| smart00312 | 105 | PX PhoX homologous domain, present in p47phox and | 99.11 | |
| cd06869 | 119 | PX_UP2_fungi The phosphoinositide binding Phox Hom | 99.09 | |
| PF00787 | 113 | PX: PX domain; InterPro: IPR001683 The PX (phox) d | 99.05 | |
| cd06093 | 106 | PX_domain The Phox Homology domain, a phosphoinosi | 99.03 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 98.96 | |
| cd06874 | 127 | PX_KIF16B_SNX23 The phosphoinositide binding Phox | 98.89 | |
| cd06883 | 109 | PX_PI3K_C2 The phosphoinositide binding Phox Homol | 98.85 | |
| PF06730 | 219 | FAM92: FAM92 protein; InterPro: IPR009602 This fam | 98.73 | |
| PF03114 | 229 | BAR: BAR domain; InterPro: IPR004148 Endocytosis a | 98.63 | |
| cd06895 | 140 | PX_PLD The phosphoinositide binding Phox Homology | 98.57 | |
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 98.55 | |
| cd06884 | 111 | PX_PI3K_C2_68D The phosphoinositide binding Phox H | 98.52 | |
| cd07623 | 224 | BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.36 | |
| cd06890 | 112 | PX_Bem1p The phosphoinositide binding Phox Homolog | 98.33 | |
| cd07624 | 200 | BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o | 98.27 | |
| cd07628 | 185 | BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of | 98.26 | |
| cd06888 | 119 | PX_FISH The phosphoinositide binding Phox Homology | 98.21 | |
| cd07598 | 211 | BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.11 | |
| cd06887 | 118 | PX_p47phox The phosphoinositide binding Phox Homol | 98.07 | |
| smart00721 | 239 | BAR BAR domain. | 98.05 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 97.95 | |
| cd07622 | 201 | BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S | 97.86 | |
| cd07667 | 240 | BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.85 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 97.81 | |
| cd07615 | 223 | BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do | 97.79 | |
| cd07588 | 211 | BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma | 97.77 | |
| cd07603 | 200 | BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 97.74 | |
| cd07592 | 223 | BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom | 97.74 | |
| cd07613 | 223 | BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do | 97.74 | |
| cd07289 | 109 | PX_PI3K_C2_alpha The phosphoinositide binding Phox | 97.72 | |
| cd07290 | 109 | PX_PI3K_C2_beta The phosphoinositide binding Phox | 97.67 | |
| cd07666 | 243 | BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S | 97.65 | |
| cd07629 | 187 | BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of | 97.65 | |
| cd07590 | 225 | BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B | 97.63 | |
| KOG1259|consensus | 490 | 97.54 | ||
| cd07593 | 215 | BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom | 97.52 | |
| cd07601 | 215 | BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A | 97.51 | |
| cd07595 | 244 | BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) | 97.49 | |
| cd07618 | 246 | BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.42 | |
| cd07620 | 257 | BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.37 | |
| cd07614 | 223 | BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do | 97.37 | |
| cd07611 | 211 | BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) | 97.33 | |
| cd07639 | 200 | BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.26 | |
| cd07602 | 207 | BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR | 97.25 | |
| cd07664 | 234 | BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S | 97.25 | |
| cd07665 | 234 | BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S | 97.24 | |
| cd07296 | 135 | PX_PLD1 The phosphoinositide binding Phox Homology | 97.24 | |
| cd07631 | 215 | BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.2 | |
| cd07637 | 200 | BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.18 | |
| cd07594 | 229 | BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom | 97.14 | |
| cd07604 | 215 | BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 97.11 | |
| cd07589 | 195 | BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of | 97.07 | |
| cd07638 | 200 | BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.07 | |
| cd07612 | 211 | BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B | 97.04 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 97.03 | |
| cd07625 | 230 | BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of | 97.03 | |
| cd07617 | 220 | BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do | 97.02 | |
| cd07591 | 224 | BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o | 96.97 | |
| cd07619 | 248 | BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of | 96.96 | |
| cd07616 | 229 | BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do | 96.93 | |
| cd07606 | 202 | BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain | 96.85 | |
| cd07597 | 246 | BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S | 96.83 | |
| cd07636 | 207 | BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G | 96.8 | |
| cd07599 | 216 | BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o | 96.76 | |
| cd07600 | 242 | BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of | 96.76 | |
| cd07632 | 215 | BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of | 96.56 | |
| cd07635 | 207 | BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of | 96.26 | |
| cd07634 | 207 | BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai | 96.2 | |
| cd07633 | 207 | BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of | 95.93 | |
| cd07630 | 198 | BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain | 95.9 | |
| KOG1118|consensus | 366 | 95.46 | ||
| KOG3771|consensus | 460 | 95.28 | ||
| PF06456 | 229 | Arfaptin: Arfaptin-like domain; InterPro: IPR01050 | 95.03 | |
| cd06889 | 121 | PX_NoxO1 The phosphoinositide binding Phox Homolog | 94.93 | |
| KOG2273|consensus | 503 | 94.7 | ||
| cd07663 | 218 | BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S | 94.44 | |
| PF10455 | 289 | BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr | 94.24 | |
| cd06896 | 101 | PX_PI3K_C2_gamma The phosphoinositide binding Phox | 94.21 | |
| cd07662 | 218 | BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S | 93.86 | |
| KOG3784|consensus | 407 | 92.52 | ||
| cd07660 | 201 | BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain | 92.41 | |
| cd07621 | 219 | BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of | 92.04 | |
| cd00011 | 203 | BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do | 91.33 | |
| cd07642 | 215 | BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 91.19 | |
| PF03114 | 229 | BAR: BAR domain; InterPro: IPR004148 Endocytosis a | 89.76 | |
| cd07604 | 215 | BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 88.7 | |
| cd07297 | 130 | PX_PLD2 The phosphoinositide binding Phox Homology | 88.61 | |
| cd07291 | 141 | PX_SNX5 The phosphoinositide binding Phox Homology | 88.23 | |
| cd07641 | 215 | BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 88.0 | |
| cd07282 | 124 | PX_SNX2 The phosphoinositide binding Phox Homology | 87.9 | |
| cd06891 | 140 | PX_Vps17p The phosphoinositide binding Phox Homolo | 87.28 | |
| cd07640 | 213 | BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 86.54 | |
| cd07283 | 116 | PX_SNX30 The phosphoinositide binding Phox Homolog | 86.27 | |
| cd06863 | 118 | PX_Atg24p The phosphoinositide binding Phox Homolo | 83.8 | |
| cd07292 | 141 | PX_SNX6 The phosphoinositide binding Phox Homology | 83.79 | |
| cd07284 | 116 | PX_SNX7 The phosphoinositide binding Phox Homology | 83.39 | |
| cd07286 | 127 | PX_SNX18 The phosphoinositide binding Phox Homolog | 83.24 | |
| cd06894 | 123 | PX_SNX3_like The phosphoinositide binding Phox Hom | 83.02 | |
| PF10925 | 59 | DUF2680: Protein of unknown function (DUF2680); In | 82.97 | |
| KOG2101|consensus | 362 | 82.39 | ||
| cd06867 | 112 | PX_SNX41_42 The phosphoinositide binding Phox Homo | 82.19 | |
| cd06861 | 112 | PX_Vps5p The phosphoinositide binding Phox Homolog | 81.98 | |
| KOG0521|consensus | 785 | 81.89 | ||
| PF07139 | 302 | DUF1387: Protein of unknown function (DUF1387); In | 81.54 | |
| PF06730 | 219 | FAM92: FAM92 protein; InterPro: IPR009602 This fam | 81.53 | |
| cd07634 | 207 | BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai | 81.31 | |
| cd06865 | 120 | PX_SNX_like The phosphoinositide binding Phox Homo | 81.11 | |
| cd06868 | 120 | PX_HS1BP3 The phosphoinositide binding Phox Homolo | 80.54 | |
| cd07293 | 123 | PX_SNX3 The phosphoinositide binding Phox Homology | 80.39 |
| >KOG2528|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=425.78 Aligned_cols=251 Identities=38% Similarity=0.634 Sum_probs=234.3
Q ss_pred cccccccCCCceEEEeeCCccccccccccccchhhhhcc--ccc----eEecCCCCcccccC--------------Cccc
Q psy17920 12 ELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKS--LVA----VVADQTKKCQTLYK--------------REYQ 71 (393)
Q Consensus 12 ~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~----~v~rry~df~~l~~--------------P~K~ 71 (393)
-||.|+.....|.+.|.||.|... .+|+++|+++ -|. .|.|||.+|.|||+ |+|+
T Consensus 175 ~g~qw~~~~~~~~c~v~~p~k~sk-----~kg~ks~i~y~ltpt~t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq 249 (490)
T KOG2528|consen 175 RGPQWQANPSPFRCVVDDPKKESK-----FKGLKSYIAYQLTPTHTNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQ 249 (490)
T ss_pred CCcccccCCCCeeEEecCcccccc-----cccchheeEeeecccccCcchhhcccccHHHHHHHHhhcccccCCCCCccc
Confidence 478999999999999999999987 6799999973 122 59999999999999 9999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc-chhhHhhhhhhhhccccccchhhhhccCCCCCCCcc
Q psy17920 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT-DEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISHF 150 (393)
Q Consensus 72 ~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~-~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~~ 150 (393)
++|||.++||++||++|+-|+|++|+||||++|++|++||+|. ||++||.+||+||+|++.| .|+.++. |. .++++
T Consensus 250 ~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkAEkDe~~g-~~~~~~~-p~-~ld~~ 326 (490)
T KOG2528|consen 250 VTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKAEKDELVG-NFLLTIS-PA-PLDLQ 326 (490)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccccccCCccc-ceeeccC-Cc-ccchH
Confidence 9999999999999999999999999999999999999999997 9999999999999999999 8999998 64 49999
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c---hh-HHHHHHHHHHHHHHH
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D---RS-HLRDALKKTGDTYNE 215 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d---~s-~L~~al~~lg~~~~~ 215 (393)
+++..++.|++|+++||+++.+|..+++.+++++.+.+.++|+++|. | ++ .|+.|+..+|.+|..
T Consensus 327 ~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y~~ 406 (490)
T KOG2528|consen 327 EVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAYHE 406 (490)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999988 1 12 499999999999999
Q ss_pred HHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q psy17920 216 LGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENK 270 (393)
Q Consensus 216 i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k 270 (393)
||+++++|+++|+.+++|.|..|.+.++.++||++.|+.|++|+++++++..+|+
T Consensus 407 Ig~lfa~qpk~Dl~p~~d~l~~y~G~l~nfpDII~~hK~A~~k~kes~~~~~~g~ 461 (490)
T KOG2528|consen 407 IGELFAEQPKQDLDPVMDLLVLYQGHLQNFPDIIHVHKGALAKVKESEQLVAEGF 461 (490)
T ss_pred HHHHhhcccccchhHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999887766663
|
|
| >PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=364.61 Aligned_cols=210 Identities=48% Similarity=0.812 Sum_probs=191.4
Q ss_pred chhhHhhhhhhhhccccccchhhhhccCCC-CCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 115 DEKRWKAGKRMAEKDNLLGPSLFLAIETPE-RSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193 (393)
Q Consensus 115 ~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~-~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~ 193 (393)
|++.||.|||+||+|+++|+.||.+|+.|. .++++.+++..+|.|++|+++|++++++|..+++++++++.+.|.++|+
T Consensus 1 DeK~WK~GKRkAEKDe~vG~~Ff~~i~~P~~~~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~q 80 (237)
T PF10456_consen 1 DEKEWKQGKRKAEKDELVGANFFLTIEVPEAKPLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQ 80 (237)
T ss_dssp SCCHHHHHHHHHHT--S-GGGGGGGEE-ESS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhhcCCchhhhhhhhhhHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 689999999999999999999999999665 8899999999999999999999999999999999999999999999999
Q ss_pred Hhcc-----------c----hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHH
Q psy17920 194 KIGI-----------D----RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNK 258 (393)
Q Consensus 194 ~lg~-----------d----~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k 258 (393)
++|. | +..|++||+.+|++|..||+++++|++.|+.++.|.|++|.|+++++|++++.|+++++|
T Consensus 81 kiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k 160 (237)
T PF10456_consen 81 KIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQK 160 (237)
T ss_dssp HHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHH
Confidence 9998 2 235999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhc
Q psy17920 259 KREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTEN 338 (393)
Q Consensus 259 ~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~ 338 (393)
+++ |++|++||
T Consensus 161 ~ke---------------------------------------------------------------------~~kl~~e~ 171 (237)
T PF10456_consen 161 VKE---------------------------------------------------------------------CEKLSDEG 171 (237)
T ss_dssp CTC---------------------------------------------------------------------HHHHHHTT
T ss_pred HHH---------------------------------------------------------------------HHHHHhcc
Confidence 886 45667899
Q ss_pred cCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 339 KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 339 k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
||+++++++|++||++||||++|||+|||++|+.||+.+|++||++||+|||+|+
T Consensus 172 K~~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~ 226 (237)
T PF10456_consen 172 KMSQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIA 226 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984
|
This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A. |
| >cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=327.15 Aligned_cols=182 Identities=35% Similarity=0.619 Sum_probs=171.7
Q ss_pred CCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHH
Q psy17920 143 PERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALK 207 (393)
Q Consensus 143 ~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~ 207 (393)
|..+++++++++.+|.|++|+++|++++.+|..+++++++|+.+.|.++|+++|. | .+.|++|+.
T Consensus 1 P~~~Ld~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~ 80 (207)
T cd07670 1 PSAVLDLQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIA 80 (207)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHH
Confidence 4456889999999999999999999999999999999999999999999999998 1 235999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVS 287 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is 287 (393)
.+|++|+.||+++++|+++|+.||+|.|++|.|+|+++||+++.|++|++|+||
T Consensus 81 ~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE-------------------------- 134 (207)
T cd07670 81 FTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKE-------------------------- 134 (207)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999998887777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHH
Q psy17920 288 YALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFH 367 (393)
Q Consensus 288 ~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~ 367 (393)
|+++++||||+++++++|++|||+||||++|||||||
T Consensus 135 -------------------------------------------~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh 171 (207)
T cd07670 135 -------------------------------------------SKKHVEEGKMELQKADGIQDRCNIISFATLAEIHHFH 171 (207)
T ss_pred -------------------------------------------HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 368 QEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 368 ~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
++|++|||++|++||++||+|||+|+
T Consensus 172 ~~r~~d~k~~M~~yL~~QI~Fyq~v~ 197 (207)
T cd07670 172 KIRVRDFKSQMQHFLQQQIRFFQKVT 197 (207)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=319.89 Aligned_cols=182 Identities=32% Similarity=0.591 Sum_probs=171.3
Q ss_pred CCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHH
Q psy17920 143 PERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALK 207 (393)
Q Consensus 143 ~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~ 207 (393)
|+.+++++++++.+|.|++|+++||++++.|..++++.++|+.+.+.++|+++|. | ++.|++|+.
T Consensus 1 p~~~Ld~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~ 80 (207)
T cd07669 1 PTEHQDLQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAIS 80 (207)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999998 1 234999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVS 287 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is 287 (393)
.+|++|+.||+++++|++.|+.||.|.|++|.|+|+++||+++.|++|+.|++|
T Consensus 81 ~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~KvkE-------------------------- 134 (207)
T cd07669 81 HTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKE-------------------------- 134 (207)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999988777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHH
Q psy17920 288 YALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFH 367 (393)
Q Consensus 288 ~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~ 367 (393)
|+++++||||+++++++|++||++||||++|||||||
T Consensus 135 -------------------------------------------~~k~~~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh 171 (207)
T cd07669 135 -------------------------------------------SQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFH 171 (207)
T ss_pred -------------------------------------------HHHhhHHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 368 QEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 368 ~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
++|+.|||++|++||++||+||++|+
T Consensus 172 ~~r~~d~k~~M~~yL~eQi~Fyq~v~ 197 (207)
T cd07669 172 QRRELDFKQMMQHYLRQQIIFYQRVS 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=319.94 Aligned_cols=180 Identities=36% Similarity=0.641 Sum_probs=169.9
Q ss_pred CCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHHHH
Q psy17920 145 RSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALKKT 209 (393)
Q Consensus 145 ~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~~l 209 (393)
.+++++++++.+|.|++|+++||+++++|..++++.++|+.+.+.++|+++|. | ++.|++|+..+
T Consensus 3 ~~Ld~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~t 82 (210)
T cd07668 3 PDLDLVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEA 82 (210)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999998 1 23599999999
Q ss_pred HHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q psy17920 210 GDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYA 289 (393)
Q Consensus 210 g~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~ 289 (393)
|.+|+.||+++++||+.|+.||+|.|++|.|+|+++||+++.|++|+.|+||
T Consensus 83 g~~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~KvkE---------------------------- 134 (210)
T cd07668 83 GKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIEKVKE---------------------------- 134 (210)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHH
Q psy17920 290 LLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQE 369 (393)
Q Consensus 290 v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~ 369 (393)
|+++++||||+++++++|++|||+||||++|||||||++
T Consensus 135 -----------------------------------------~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~ 173 (210)
T cd07668 135 -----------------------------------------SDKLVATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSN 173 (210)
T ss_pred -----------------------------------------HHHHhhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 370 QVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 370 ~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
|++|||++|++||++||+|||+|+
T Consensus 174 r~~d~k~~M~~yL~eQi~Fyq~v~ 197 (210)
T cd07668 174 RIYDYNSVIRLYLEQQVQFYETIA 197 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi |
| >cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=262.38 Aligned_cols=181 Identities=45% Similarity=0.784 Sum_probs=173.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHHHHHHHHHHH
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALKKTGDTYNEL 216 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~~lg~~~~~i 216 (393)
++..+|.|++|+++||+++++|..+++.+++|+.+.+.++|+++|. | ++.|++||+++|+++++|
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999888 1 345999999999999999
Q ss_pred HHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 217 GKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 217 ~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
++++++||+.|+.+|.|.|++|.|+++++|++++.|++++.|+|+++++..+||++..++++++++|+.||+++++||+|
T Consensus 82 g~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~al~K~kE~~r~~~egk~~~~e~~ev~~r~d~IS~~~~aE~~~ 161 (199)
T cd07626 82 GELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINH 161 (199)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
||.+|+.|||.+|+.||+.||+||++++..++.+..
T Consensus 162 F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~ 197 (199)
T cd07626 162 FHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for |
| >KOG2273|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=239.83 Aligned_cols=311 Identities=18% Similarity=0.268 Sum_probs=221.4
Q ss_pred ceEEEeeCCc-cccccccc-cccchhhhhc--ccc---ceEecCCCCcccccC--------------Ccccccc-----C
Q psy17920 22 ILSISHFNLE-QETESCSR-FIHGLDSAVK--SLV---AVVADQTKKCQTLYK--------------REYQKIG-----R 75 (393)
Q Consensus 22 ~~~i~v~~p~-k~~~~~s~-f~~~~~~~~~--~~~---~~v~rry~df~~l~~--------------P~K~~~g-----~ 75 (393)
.+.|++++|+ ..+++.+. +.+.+.+-.. .+. ..|.|||+||.|||+ |+|.+.+ +
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 3778888888 55542221 1122222111 111 279999999999999 8888764 5
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccch-hhHhhhhhhhhccccccchhhhhcc-CC-----CCCCC
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDE-KRWKAGKRMAEKDNLLGPSLFLAIE-TP-----ERSIS 148 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e-~~wk~~~~~ae~~~~~g~~~~~~v~-~~-----~~~~~ 148 (393)
|+++|+++||++|++||+||+.||+|+.+++|+.||+.+.. ..|....+........+..++..+. .+ .....
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSKELPTDVNSRFKSGADLLSKQFFGETSSTDAVSLLPSFKK 268 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccccccchhhHHHHhcchhhccccccCcccchhhhhccccccc
Confidence 89999999999999999999999999999999999998732 1111111110000011111111111 00 01122
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c--hh-HHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D--RS-HLRDALKKTGDTYNELGK 218 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d--~s-~L~~al~~lg~~~~~i~~ 218 (393)
+.+.+.++.....++..|+..+.++.+...++... ...+...|.++|. . .. +|+.++..++.....++.
T Consensus 269 ~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~-~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (503)
T KOG2273|consen 269 FKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKR-RRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSK 347 (503)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 34457788888889999999999988888886543 3456666666665 1 33 799999999999999999
Q ss_pred HHhcC-ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH-----------Hhhhh-------cccc-------
Q psy17920 219 LFEEQ-PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE-----------KMTTE-------NKME------- 272 (393)
Q Consensus 219 ~~~~Q-~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e-----------rl~~e-------~k~~------- 272 (393)
+...+ +.++...+.+.+++|.+++.+++.++..+.+++.++.++. ++... .++.
T Consensus 348 ~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~ 427 (503)
T KOG2273|consen 348 LLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIE 427 (503)
T ss_pred HHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHH
Confidence 99999 9999999999999999999999999999877765554431 11100 1111
Q ss_pred --HHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 273 --ANRLQEVL-----KRTD--TVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 273 --~~~ve~~~-----~~~e--~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.+.+.... ++.+ .|+..++.|+.+|...|..||+.+++.|++.+++++.+++..|.+.++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 428 KLEEKVNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 13334444 4445 8999999999999999999999999999999999999999999999875
|
|
| >cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=212.06 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=176.9
Q ss_pred CCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCC----CCC-ccchhHhHHHHHHHHHHHHHHHHH
Q psy17920 98 HPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPER----SIS-HFNLEQETESCSRFIHGLDSAVKS 172 (393)
Q Consensus 98 HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~----~~~-~~~~d~~~d~f~~~l~~L~~~l~~ 172 (393)
||+|+.+++|+.|||+. +|+...++. .|+|++..++.+.. ... ....+.+|...+.|++.|+.+|.+
T Consensus 1 HPvLs~~~~~~~FL~s~---~W~~~~~~~-----~~~g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ 72 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQ---AWELSSHKK-----QGPGLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINV 72 (243)
T ss_pred CCccccChHHHHHHcCc---hHHHHHHHh-----cchhhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999986 799866543 23333333321110 100 234567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhh
Q psy17920 173 LVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSM 245 (393)
Q Consensus 173 L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~ 245 (393)
+.++.++++++. .+|...+..+|+ .+..|.++|+.+|.+++.++....++...+.+.|+++|++|++++.++
T Consensus 73 ieki~~Rl~kr~-~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~sl 151 (243)
T cd07666 73 LDKISQRIYKEQ-REYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETL 151 (243)
T ss_pred hHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998875 356555555555 345699999999999999998888888888889999999999999999
Q ss_pred hhHHHHHHHHH---HHHHHHH-Hhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 246 PDILGLHKDIL---NKKREYE-KMTTENKM-EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFY 320 (393)
Q Consensus 246 ~~v~~~~~~al---~k~re~e-rl~~e~k~-~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~ 320 (393)
++++..|..+. .++++.. +.. ..|. -..++++++.+.++.+..+++|++||+.+|+.|||.++.+|++.||++|
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k~~-~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~ 230 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALANKK-ADRDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYY 230 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987653 3333331 111 1121 1278999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHH
Q psy17920 321 QKDILNKKREY 331 (393)
Q Consensus 321 qk~a~~~~~~~ 331 (393)
++++..|+...
T Consensus 231 ~~~~~~We~fl 241 (243)
T cd07666 231 EECLATWESFL 241 (243)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-28 Score=205.05 Aligned_cols=104 Identities=37% Similarity=0.624 Sum_probs=93.3
Q ss_pred eEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC---------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK---------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fi 81 (393)
|.|.|+||+|++. ..|+++|+.+ ...+|.||||||.||++ |+|++.|+|+++||
T Consensus 1 ~~~~V~dp~k~~~-----~~g~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FI 75 (126)
T cd07285 1 FDCVVADPRKGSK-----MYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFI 75 (126)
T ss_pred CEEEEcCcccccC-----CCCCcCeEEEEEEeccCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHH
Confidence 5699999999984 2366666652 22479999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhcccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~ 131 (393)
++||++|++||++|++||+|+.|++|+.||+++++++|+.+++++|+|+.
T Consensus 76 e~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~~w~~~~~~~e~~~~ 125 (126)
T cd07285 76 KMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDET 125 (126)
T ss_pred HHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHHHHHhhChHhhccCC
Confidence 99999999999999999999999999999999999999999999998874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T |
| >cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-27 Score=201.52 Aligned_cols=104 Identities=39% Similarity=0.663 Sum_probs=92.3
Q ss_pred eEEEeeCCccccccccccccchhhhhccc------cceEecCCCCcccccC--------------CccccccCCChHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIE 82 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie 82 (393)
|.|+|+||+|+|. ..|+++|+++- ...|.|||+||.||++ |+|++.|+|+++||+
T Consensus 1 ~~~~v~dp~k~~~-----~~G~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe 75 (127)
T cd07286 1 FQCTIDDPTKQTK-----FKGMKSYISYKLVPSHTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFIS 75 (127)
T ss_pred CeEEeCCCcccCC-----CCCCcCEEEEEEEEecCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHH
Confidence 5799999999983 11566666531 1379999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccccccc--chhhHhhhhhhhhcccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT--DEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~--~e~~wk~~~~~ae~~~~ 131 (393)
+||++|+.||++|+.||+|+.|++|+.||+++ ++++|+.+++++|+|.+
T Consensus 76 ~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~~~~~~~~~~~~~e~~~~ 126 (127)
T cd07286 76 KRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQGKRKAEKDEM 126 (127)
T ss_pred HHHHHHHHHHHHHHcCcccccChHHHHHhcCCcchhHHHhhcchHhhcccc
Confidence 99999999999999999999999999999987 78999999999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki |
| >cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=194.52 Aligned_cols=224 Identities=14% Similarity=0.163 Sum_probs=173.6
Q ss_pred CCCccccccccccccccchhhHhhhhhhhhccc-cccch--hhhhccCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy17920 98 HPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN-LLGPS--LFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLV 174 (393)
Q Consensus 98 HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~-~~g~~--~~~~v~~~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~ 174 (393)
||+|+.+++|+.|||+. +|...++...... ..|++ +++.. ......+.+|..++.|++.|++.|.++.
T Consensus 1 HPvLs~~~~f~~FLts~---dw~a~~kq~~~~~~~~~~~~~~lna~------~kv~~~d~eF~e~~ey~d~l~~~l~~ie 71 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK---DLNAYKKQGIALLSKMGESVKYVTGG------YKLRSRPLEFAAIGDYLDTFALKLGTID 71 (240)
T ss_pred CCccccChHHHHHHcch---hHHHHhhcccccccccchHHHHHHHH------hccCCCChHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999999997 7987665532111 11111 11111 1123345778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhh
Q psy17920 175 AVVADQTKKCQTLYKREYQKIGID-------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPD 247 (393)
Q Consensus 175 ~~~~~l~kk~~~~~~~~~~~lg~d-------~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~ 247 (393)
++.+|++++ ..++..+|.++|.- ++.|..+|..++.+++.++....+..+..-+.+++.|++|..++.|++.
T Consensus 72 ki~~Rv~kr-~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~ 150 (240)
T cd07667 72 RIAQRIIKE-EIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKN 150 (240)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999876 45688888888772 4569999999999999999888777665557899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 248 ILGLHKDILNKKREYEKM--TTENKME--ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 248 v~~~~~~al~k~re~erl--~~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
++..|......+.+.... ....++. ..+++++++++|++++.+++|+++|+..|..|||.+|.+|++.||+||+++
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~ 230 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKC 230 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876643222221100 0001121 267999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHH
Q psy17920 324 ILNKKREY 331 (393)
Q Consensus 324 a~~~~~~~ 331 (393)
+..|.+..
T Consensus 231 ~~~We~~l 238 (240)
T cd07667 231 LTAWESII 238 (240)
T ss_pred HHHHHHHc
Confidence 99999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=186.85 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=158.2
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~~ 220 (393)
+.+.|++|..-+.|+..|+.+|+.+.+.+..+++.+. +.|+..+..||. + .+.|+++|..+|+++++++.++
T Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~ 86 (224)
T cd07623 7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLH 86 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998887653 245555666666 2 3569999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHH----------HHHHH-HHhhhhcccc------------HHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILN----------KKREY-EKMTTENKME------------ANRLQ 277 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~----------k~re~-erl~~e~k~~------------~~~ve 277 (393)
.+|+..|..+|.++|++|.++++++|++|..|.+++. ++++. +|+...|+.+ +..++
T Consensus 87 ~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~ 166 (224)
T cd07623 87 GEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVD 166 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764 44443 4554455432 25566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 278 EVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 278 ~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.++.+++.|+..++.|+.||+.+|+.||+.+|..|+++||+++++++..|....+.
T Consensus 167 ~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe 222 (224)
T cd07623 167 RGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPE 222 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77889999999999999999999999999999999999999999999999998764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh |
| >cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=186.53 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=158.8
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGID--RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~d--~s~L~~al~~lg~~~~~i~~~ 219 (393)
...+.|++|+.-..|+..|+.+|+.|.+.+..+++.+. ++|++....||.. .+.|+++|+++|++.++++++
T Consensus 16 k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~ 95 (234)
T cd07665 16 KMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQL 95 (234)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999998887653 2466666777773 356999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcccc------------HHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKME------------ANRL 276 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~------------~~~v 276 (393)
++.|+.+|+..|.++|++|+++|+|++.+|..|.+++..|..+ .|+...|+.+ +..+
T Consensus 96 ~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~ 175 (234)
T cd07665 96 HQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRV 175 (234)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765444433 2333234332 1567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++++.+|+.|+..++.|+.||+.+|+.||+.++..|++++|+.+++++..|....+++
T Consensus 176 ~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~ 233 (234)
T cd07665 176 TQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7788999999999999999999999999999999999999999999999999988754
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=181.02 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=158.4
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~ 219 (393)
...++|++|+.-..|+..|+.+|+.|.+.+..+++.+. ++|++....||. + .+.|+++|+++|++.+++..+
T Consensus 16 k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~ 95 (234)
T cd07664 16 KMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQL 95 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999998887653 245556666777 3 346999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcccc------------HHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKME------------ANRL 276 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~------------~~~v 276 (393)
+.+|+..|+..|.++|++|.++++|++.+|..|..++..|..+ .|+...|+.+ +..+
T Consensus 96 ~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~ 175 (234)
T cd07664 96 HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKV 175 (234)
T ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765544433 2332234321 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++++.+++.|+..++.|+.||+.+|+.||+.++..|+++||+++++++..|....+++
T Consensus 176 ~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 176 QQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7778899999999999999999999999999999999999999999999999998764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=175.63 Aligned_cols=180 Identities=9% Similarity=0.107 Sum_probs=150.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQP 224 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~ 224 (393)
.+++|...+.|+..|+.+|..+.++..++++++ .++..+|.++|. .++.|..+|+.+|++.+.++....+++
T Consensus 12 ~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~-~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~ 90 (200)
T cd07624 12 RSPEFDKMNEYLTLFGEKLGTIERISQRIHKER-IEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLL 90 (200)
T ss_pred CCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999998864 556666666666 344699999999999999999999999
Q ss_pred cccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 225 KLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKM-EANRLQEVLKRTDTVSYALLGEINHFHQEQVS 303 (393)
Q Consensus 225 ~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~-~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~ 303 (393)
+.+...|.++|++|.+++++++.++..|......+..+......-+. -+.++++++.++++++..+++|++||+.+|..
T Consensus 91 ~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~ 170 (200)
T cd07624 91 SDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNKRQ 170 (200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999887654433332110000000 34789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 304 QINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 304 Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
|||.+|.+|++.||+||++++..|....+
T Consensus 171 d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 171 DLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999998753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-23 Score=175.91 Aligned_cols=104 Identities=43% Similarity=0.733 Sum_probs=90.7
Q ss_pred eEEEeeCCccccccccccccchhhhhcc-----cc-ceEecCCCCcccccC--------------CccccccCCChHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS-----LV-AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIE 82 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~-----~~-~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie 82 (393)
++|+|+||+|.++ ..|++.|+.+ .+ ..|.|||+||.||++ |+|.+.|+++++||+
T Consensus 1 ~~~~v~~p~~~~~-----~~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~fie 75 (125)
T cd06862 1 YHCTVTNPKKESK-----FKGLKSFIAYQITPTHTNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDFIE 75 (125)
T ss_pred CEEEEcCccccCC-----CCCCcCEEEEEEEEecCcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHHHH
Confidence 5799999999974 1134444432 13 479999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhcccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~ 131 (393)
+||++|+.||++|+.||.|+.|+.|+.||+.+++++|+.+.+++|.+++
T Consensus 76 ~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~~~~~~~~~~~~~~~~ 124 (125)
T cd06862 76 KRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDWKSGKRKAEKDEL 124 (125)
T ss_pred HHHHHHHHHHHHHhcCHhhhcChHHHHHcCCccHHHHHHhhHHHhcccC
Confidence 9999999999999999999999999999999999999999999988775
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca |
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=166.29 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=150.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhccc--hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREY-------QKIGID--RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~-------~~lg~d--~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
+|++|..-+.|+..|+.+|+.+.+.+..+++++ .+++..+ ..||.. .+.|+.+|..+|++.++++.++..
T Consensus 2 ~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r-~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 2 PDEWFIEKKQYLDSLESQLKQLYKSLELVSSQR-KELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999988765 3344444 445542 356999999999999999999999
Q ss_pred CccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcc-----c---------cHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENK-----M---------EANRLQ 277 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k-----~---------~~~~ve 277 (393)
++..|...|.++|++|.++++|++++|..|..++..+..+ +|+...|+ + .+..++
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988765444432 34432232 1 125677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 278 EVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 278 ~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.++.+++.|+..++.|+.+|+.+|+.||+.+|..|+++||+++++++..|....+
T Consensus 161 ~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 161 ELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788999999999999999999999999999999999999999999999998754
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-22 Score=165.53 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=72.2
Q ss_pred eEEEeeCCccccccccccccchhhhhc-------c---cc---ceEecCCCCcccccC--------------Cccccc--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-------S---LV---AVVADQTKKCQTLYK--------------REYQKI-- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-------~---~~---~~v~rry~df~~l~~--------------P~K~~~-- 73 (393)
+.|+|+||++++++ ++.|++ + ++ ..|.|||+||.||++ |+|.+.
T Consensus 1 ~~i~V~dP~~~~~~-------~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~ 73 (116)
T cd07284 1 IFITVDEPESHVTA-------IETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKG 73 (116)
T ss_pred CEEEEeCcceeecC-------CcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhh
Confidence 47999999999984 444443 2 22 279999999999999 788754
Q ss_pred --cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 74 --GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 --g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+|+++||++||++|+.||++|+.||+|+.|++|+.|||+
T Consensus 74 ~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 74 MVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 5799999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, |
| >cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=161.67 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=151.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhH-HHHHHHHHHHHHHHHHHHHhcC
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSH-LRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~-L~~al~~lg~~~~~i~~~~~~Q 223 (393)
.+++|..++.|++.|+.+|.++.++.++++++. .++..+|.++|. .++. |..+|+.+|...+.++....++
T Consensus 2 ~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~-~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l 80 (185)
T cd07628 2 PDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQ-SDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVL 80 (185)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999998864 567777777776 2344 9999999999999999988888
Q ss_pred ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVS 303 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~ 303 (393)
+......|.++|++|..++++++.++..|......+..+.... -..+++.++.+++.++..+++|++||+.+|..
T Consensus 81 ~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l-----l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~ 155 (185)
T cd07628 81 NKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL-----LTDEVENAKETSDAFNKEVLKEYPNFERIKKQ 155 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877789999999999999999999998887655444433222 34789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 304 QINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 304 Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
||+.+|.+|++.||+||++++..|.+..
T Consensus 156 elk~~l~~~a~~qi~~y~~~~~~W~~~~ 183 (185)
T cd07628 156 EIKDSLGALADGHIDFYQGLVEDWEKVE 183 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-21 Score=166.00 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=76.3
Q ss_pred CceEEEeeCCccccccccccccchhhhh-cccc------ceEecCCCCcccccC-------------Ccccc--------
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAV-KSLV------AVVADQTKKCQTLYK-------------REYQK-------- 72 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~-~~~~------~~v~rry~df~~l~~-------------P~K~~-------- 72 (393)
..++|+|+||+|+|++.+.|+. ++..+ +..| ..|.|||+||.||++ |+|++
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~-Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTT-YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEE-EEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceeccccccc
Confidence 4689999999999996554431 11111 1233 369999999999999 78986
Q ss_pred -ccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 73 -IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 73 -~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.|+|+++|||+||++|+.||++|+.||+|+.|+.|+.||+.+
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDE 123 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCC
Confidence 258999999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. |
| >cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-21 Score=164.64 Aligned_cols=91 Identities=23% Similarity=0.336 Sum_probs=74.6
Q ss_pred eEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC-------------Cccccc---------
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK-------------REYQKI--------- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~-------------P~K~~~--------- 73 (393)
++|+|+||++++++.+.|+. +...+. +.| ..|.|||+||.||++ |+|...
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~-Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTT-YEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDD 80 (123)
T ss_pred eEEEecCCeEecCCCcCEEE-EEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhccccccc
Confidence 78999999999996544321 111111 233 269999999999999 789874
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 74 g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+|+++|||+||++|+.||++|++||+|+.|++|+.||+.+
T Consensus 81 ~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 81 GIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 58999999999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f |
| >cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-21 Score=162.52 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=71.6
Q ss_pred eEEEeeCCccccccccccccchhhhhc-------ccc------ceEecCCCCcccccC--------------Cccccc--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-------SLV------AVVADQTKKCQTLYK--------------REYQKI-- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-------~~~------~~v~rry~df~~l~~--------------P~K~~~-- 73 (393)
+.|+|+||.+++++ ++.|+. ..| ..|.|||+||+||++ |+|.+.
T Consensus 1 ~~i~V~dP~~~~~~-------~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~ 73 (116)
T cd07283 1 LFVTVDDPKKHVCT-------METYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKG 73 (116)
T ss_pred CEEEEcCcceecCC-------CcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccc
Confidence 46999999999884 333333 222 379999999999999 788653
Q ss_pred --cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 74 --GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 --g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
++|+++|||+||++|+.||++|+.||+|+.+++|+.|||+
T Consensus 74 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 74 VVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 4899999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32 |
| >cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=156.63 Aligned_cols=75 Identities=45% Similarity=0.744 Sum_probs=72.3
Q ss_pred HhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 319 FYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 319 ~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
.-|+.+.+++++|+++.++|||+++++++|++|||+||||++|||+|||.+|+.|||++|+.||++||.|||+|+
T Consensus 115 ~~~k~al~K~kE~~r~~~egk~~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~ 189 (199)
T cd07626 115 GVHKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIA 189 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999874
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for |
| >cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=157.47 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=156.4
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHh
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGI-DRSHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~-d~s~L~~al~~lg~~~~~i~~~~~ 221 (393)
..++|++|+.-+.|+..++.+|+.+...+..+++.|.. .|++....||. +.+.|+++|+.+|+.++.+..++.
T Consensus 19 ~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~ek~~~l~~ 98 (219)
T cd07621 19 QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETFEKLRKLEG 98 (219)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999988776532 34445555555 345699999999999999999999
Q ss_pred cCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhh----h-hccc--cHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMT----T-ENKM--EANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~----~-e~k~--~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.|+..|...|+++|++|.+++++++++|..|..++..|..+++.. . ..++ .+.++++++.+||.||..++.|+
T Consensus 99 r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El 178 (219)
T cd07621 99 RVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQEL 178 (219)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888775321 1 1112 23677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.+|+.||+..|..|++.||.+.+..+..+....-
T Consensus 179 ~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~ 216 (219)
T cd07621 179 LDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLA 216 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876553
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain |
| >cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=157.16 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=157.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D-RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d-~s~L~~al~~lg~~~~~i~~~~ 220 (393)
..++|++|+.-..|+..++.+|+.+...+..+++.+. .++.+|..+|. + ++.|+++|+.+|+.++.+..++
T Consensus 18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rk-ela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~ 96 (218)
T cd07663 18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHK-NVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVE 96 (218)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999987653 35556655444 2 3469999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhcc-c--cHHHHHHHHHHHHHHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKM----TTENK-M--EANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k-~--~~~~ve~~~~~~e~is~~v~~E 293 (393)
..|+..|...|+|+|++|.+++++++++|..|..++..|..+++. ...++ + .+.++.+++.+|+.||..++.|
T Consensus 97 ~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~E 176 (218)
T cd07663 97 DRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQE 176 (218)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888876432 11111 1 2366778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+.||+..|+.||+..|..|++++|.+.+..+..|......
T Consensus 177 l~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~ 216 (218)
T cd07663 177 LISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988876543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It |
| >cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=156.96 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=153.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc--hh--HHHHHHHHHHHHHHHHHHHH
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID--RS--HLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d--~s--~L~~al~~lg~~~~~i~~~~ 220 (393)
++|++|+.-+.|+..|+.+|+.+...+..+++.+.. .|+.....||.. .+ .|+++|+.+|+..+.+..++
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999888876532 344445555552 23 69999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhh---hcccc--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTT---ENKME--ANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~---e~k~~--~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
..|+.+|...|.++|++|.+++++++++|..|..++..|..+++... +.|.+ +...++++.+|+.||..++.|+.
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k~~~ae~~~~~a~~~fe~iS~~~k~EL~ 160 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQKKEQAEEAKKKAETEFEEISSLAKKELE 160 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888776643311 12222 36677789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
||+.+|+.||+..|..|+++||+..+..+..|.+.+
T Consensus 161 rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 161 RFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=162.36 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=151.2
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c--hhHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D--RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d--~s~L~~al~~lg~~~~~i~~~ 219 (393)
..+.|++|.....|+..|+.+|+.|.+...++++.+ .+++..+.++|. . ...|++++..+|++++.++..
T Consensus 19 ~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~-~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~ 97 (236)
T PF09325_consen 19 MKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRR-QELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISEL 97 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999988764 345555555555 2 235999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH-----------HHHhhhhcccc--------------HH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKRE-----------YEKMTTENKME--------------AN 274 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re-----------~erl~~e~k~~--------------~~ 274 (393)
+..++..+...|.++|++|.++++++++++..|..++..+.. .+++...++.. +.
T Consensus 98 ~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~ 177 (236)
T PF09325_consen 98 LEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAER 177 (236)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765333222 22332221111 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 275 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 275 ~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.++.++.+++.|+..++.|++||+.+|+.||+.+|..|++.||++|++++..|....+
T Consensus 178 ~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 178 RVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 5677788999999999999999999999999999999999999999999999998764
|
This is the C-terminal dimerisation domain []. |
| >cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=157.33 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=147.7
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
..+++|..++.|+..|+.+|.++.++.++++++ ..++..+|.++|. .+++|..+|+.+|++++.++....+.
T Consensus 11 ~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r-~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 11 NPDKRFEDLKNYSDELQTNLNNLLKVRARLAER-LYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999876 5668888888887 24569999999999999998887777
Q ss_pred ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
...+ ..|.++|++|..++++++.++..|...--.+.. +.+...+ -+.+++.++.+.+.+++.+++|++||+.
T Consensus 90 ~~~~-~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~~E~~rF~~ 165 (201)
T cd07622 90 LEDE-ELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKALEDVERFKK 165 (201)
T ss_pred HHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 789999999999999999999866542111111 1111111 3489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+|..||+.+|.+|+..||+||++++..|.+.-+-
T Consensus 166 ~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~ 199 (201)
T cd07622 166 QKVRDLKEILISYAKLQIKLAKKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and |
| >cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-21 Score=159.19 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=75.2
Q ss_pred eEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
|+|+|+||+++|+..+.|+. +...+. .. ...|.|||+||.||++ |+|.+.|+|+++||
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi 79 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTV-YTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV 79 (112)
T ss_pred CEEEEcCcceecCCccCeEE-EEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence 68999999999985443321 111111 11 2369999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+||++|+.||++|+.||+|+.|+.|+.||+++
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P |
| >cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-21 Score=161.32 Aligned_cols=91 Identities=23% Similarity=0.359 Sum_probs=74.9
Q ss_pred eEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC-------------Cccccc---------
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK-------------REYQKI--------- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~-------------P~K~~~--------- 73 (393)
++|+|+||++++++.+.|+. +..-+. ..| ..|.|||+||.|||+ |+|++.
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~-Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTD-YEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDD 80 (123)
T ss_pred eEEEEeCCcEecCCCcCEEE-EEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceeccccccccc
Confidence 78999999999996544331 111111 122 379999999999999 899874
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 74 g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+|+++|||+||++|+.||++|+.||+|+.|+.|+.||+.+
T Consensus 81 ~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 81 GIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 79999999999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the |
| >cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-20 Score=158.46 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred EEEeeCCccccccccccccchhhhhccc-----cceEecCCCCcccccC-------------------CccccccCCChH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKSL-----VAVVADQTKKCQTLYK-------------------REYQKIGRYEEQ 79 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~~-----~~~v~rry~df~~l~~-------------------P~K~~~g~~~~~ 79 (393)
.++|+||+|++++|..+......-.... +.+|.||||||.|||+ |+|++.|+|+++
T Consensus 4 ~~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~ 83 (118)
T cd07288 4 FYSVTDPRTHPKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAA 83 (118)
T ss_pred EEEecCCcCcCCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHH
Confidence 5899999999998765432211111111 3479999999999987 889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|||+||++|++||++|++||+|..|++|+.||+.
T Consensus 84 fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 84 VIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 9999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t |
| >cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-20 Score=160.84 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=76.7
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcccc---c-eEecCCCCcccccC--------------Cccccc-cCCCh
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSLV---A-VVADQTKKCQTLYK--------------REYQKI-GRYEE 78 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~---~-~v~rry~df~~l~~--------------P~K~~~-g~~~~ 78 (393)
.....+.|+|+||+|.|+++--+.....+-...|. . +|+|||+||+||++ |+|.+. |++++
T Consensus 25 ~~~~~l~i~Vtd~ek~G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~~ 104 (140)
T cd06891 25 KPKYFLRVRVTGIERNKSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNNE 104 (140)
T ss_pred CCCceEEEEEeCceecCCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCCH
Confidence 44567999999999999843221111111111221 2 69999999999999 999976 89999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+++||.+||+||+|||.||+|..|++|+.||++
T Consensus 105 E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 105 EDARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 99999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur |
| >cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=157.75 Aligned_cols=91 Identities=21% Similarity=0.336 Sum_probs=73.0
Q ss_pred eEEEeeCCcccccccccccc-chhhhh--cccc---ceEecCCCCcccccC--------------Cccccc----cCCCh
Q psy17920 23 LSISHFNLEQETESCSRFIH-GLDSAV--KSLV---AVVADQTKKCQTLYK--------------REYQKI----GRYEE 78 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~-~~~~~~--~~~~---~~v~rry~df~~l~~--------------P~K~~~----g~~~~ 78 (393)
++|+|+||+|++++.+.|+. .+.+-+ ..++ ..|.|||+||.||++ |+|... |+|++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 47999999999985443321 111111 1122 269999999999999 788873 58999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|||+||++||.||++|+.||+|+.|+.|+.||++
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal |
| >cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-20 Score=157.20 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=75.4
Q ss_pred eEEEeeCCccccccccccccchhhhhc----ccc---ceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
++|+|+||+|++++.+.|+. +..-+. .|+ ..|.|||+||.|||+ |+|.+.|+|+++||
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~-Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~i 80 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTD-YEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVI 80 (116)
T ss_pred eEEEEeCCcEecCCCCCEEE-EEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHH
Confidence 78999999999996544431 111111 232 369999999999999 78999899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcc-cccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLC-RSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~-~~~~~~~FL~~~ 114 (393)
|+||++|+.||++|+.||+|+ .++.+..||+.+
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 999999999999999999998 689999999976
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. |
| >cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-20 Score=158.57 Aligned_cols=91 Identities=16% Similarity=0.331 Sum_probs=71.8
Q ss_pred eEEEeeCCccccccccccc-cchhhh--hcccc---ceEecCCCCcccccC----------------CccccccC-----
Q psy17920 23 LSISHFNLEQETESCSRFI-HGLDSA--VKSLV---AVVADQTKKCQTLYK----------------REYQKIGR----- 75 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~-~~~~~~--~~~~~---~~v~rry~df~~l~~----------------P~K~~~g~----- 75 (393)
++|+|+||++++++.+.|+ +.+.+- ...++ ..|.|||+||.|||+ |+|.+.|.
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 5899999999998433221 111110 00122 379999999999998 78998663
Q ss_pred -----CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 76 -----YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 76 -----~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+++|||+||.+||.||++|+.||+|+.|++|+.||++
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 68999999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort |
| >cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=149.10 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=155.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID-RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d-~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
.++|.||+.=..|+..++..|+.+...+..+++.+.. .+++.+..||.. ++.|+++|+++++.++++..++..
T Consensus 19 kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l~~~ 98 (218)
T cd07662 19 KDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKIEAR 98 (218)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999988888765532 233444455553 456999999999999999999999
Q ss_pred CccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhccc---cHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKM----TTENKM---EANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
|+..|...|+|+|.+|.+++++++++|..|..++..|..+++. ...||- .+..+.+++.+|+.||..++.|+.
T Consensus 99 ~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~~~a~~~Fe~IS~~aK~El~ 178 (218)
T cd07662 99 VAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQQLCCQKFEKISESAKQELI 178 (218)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876532 223432 246788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
||+..|+.+||..|..|++.+|++.+..+.-|..-..
T Consensus 179 rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~ 215 (218)
T cd07662 179 DFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLA 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888876543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays |
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=152.77 Aligned_cols=179 Identities=25% Similarity=0.304 Sum_probs=150.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-hh---HHHHHHHHHHHHHHHHHHHH
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D-RS---HLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d-~s---~L~~al~~lg~~~~~i~~~~ 220 (393)
.|++|..+..|++.|+.+++.|.+...++++++ .+++.+|.+||. . .. .|+.++..+|++++.++...
T Consensus 2 ~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~-~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 2 EDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRR-RELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998765 446666766666 1 22 49999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhh-----cccc---------HHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTE-----NKME---------ANR 275 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e-----~k~~---------~~~ 275 (393)
..++..+...|.++|++|.+++.++++++..|...+..+..+ +++... .++. +.+
T Consensus 81 ~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~ 160 (218)
T cd07596 81 EAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESA 160 (218)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765444433 222211 1221 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 276 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 276 ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
++.++.+++.|+..++.|+.||+.+|+.||+.+|..|++.||+|+++++..|....
T Consensus 161 ~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 161 LEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77788899999999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=143.37 Aligned_cols=177 Identities=15% Similarity=0.205 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHhcCccccccch
Q psy17920 159 CSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGI-DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPL 231 (393)
Q Consensus 159 f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~-d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l 231 (393)
+..++..++.++..|+.....+++++ .+.|++....||. ++++|+.+|+.+++++..+.+.++.|++.+...|
T Consensus 9 i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v 88 (211)
T cd07598 9 IQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKV 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555543 3456777777777 4567999999999999999999999999999999
Q ss_pred hHHHHHHHhHHhhhhhHHHH----HHHHHHHHHHHHHhhhhccc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 232 GDVLHIYKGIITSMPDILGL----HKDILNKKREYEKMTTENKM-------EANRLQEVLKRTDTVSYALLGEINHFHQE 300 (393)
Q Consensus 232 ~e~L~ey~~ll~s~~~v~~~----~~~al~k~re~erl~~e~k~-------~~~~ve~~~~~~e~is~~v~~E~~rF~~e 300 (393)
.++|++|.+++.++++.+.. +...+.+....+|+...+.. .+.++..++.+++.++..+..||++|+.+
T Consensus 89 ~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~ 168 (211)
T cd07598 89 VQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQ 168 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 33334445555665433322 23778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 301 QVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 301 k~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|..|||.++.+|+..|+.||.+.+..|....+.+.
T Consensus 169 k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 169 KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987664
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-19 Score=150.79 Aligned_cols=90 Identities=21% Similarity=0.375 Sum_probs=72.0
Q ss_pred eEEEeeCCccccccccccccchhhhhc-c---c---cceEecCCCCcccccC----------------Ccccccc-----
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-S---L---VAVVADQTKKCQTLYK----------------REYQKIG----- 74 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~---~---~~~v~rry~df~~l~~----------------P~K~~~g----- 74 (393)
++|+|+||++++++.+.|+. +...+. . + ...|.|||+||+||++ |+|.+.|
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~ 79 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVV-YKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 79 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEE-EEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence 57999999999985444321 111111 1 1 2379999999999998 7887765
Q ss_pred -----CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 -----RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 -----~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++|||+||++|+.||++|+.||+|+.|++|+.||+.
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 468999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval |
| >cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=142.49 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=141.1
Q ss_pred hhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-------ch--hHHHHHHHHHHHHHHHHHHHHh
Q psy17920 152 LEQETESCSRFIHGLDSAVK-SLVAVVADQTKKCQTLYKREYQKIGI-------DR--SHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~-~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~--s~L~~al~~lg~~~~~i~~~~~ 221 (393)
++.+|..++.+++.++..|. .|.++..++.++ ..++..+|.+||. .. .+|+.+|..+|++++..+....
T Consensus 2 ~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~-~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 2 PDDEFTDIEAETKKYEQLLHGGMEKVNRRITKR-LGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred cchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999995 799999998764 5678888888888 12 3599999999999999988777
Q ss_pred cCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTV-SYALLGEINHFHQE 300 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~i-s~~v~~E~~rF~~e 300 (393)
.........|.|+|++|..++.+++.++.-|+.....+..+.... ..++.++..+.+.+ +..+++|+.||+++
T Consensus 81 ~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e~~~~~~~~~~~~~~~~~~~el~rF~~e 154 (187)
T cd07629 81 ALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LESALVAASDDLVISSTIKQKDLPRFQRE 154 (187)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666678999999999999999999987766443333332222 24444556666666 58899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 301 QVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 301 k~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
|..||+.+|++|+..|++|+.+++..|...
T Consensus 155 k~~dl~~~l~~~a~~~~~~a~~~~~~W~~~ 184 (187)
T cd07629 155 READLREILKNYSKYHKDWAKQNLEAWKEA 184 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=147.05 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred EEeeCCccccccccccccchhhhhcccc-----ceEecCCCCcccccC-------------------CccccccCCChHH
Q psy17920 25 ISHFNLEQETESCSRFIHGLDSAVKSLV-----AVVADQTKKCQTLYK-------------------REYQKIGRYEEQF 80 (393)
Q Consensus 25 i~v~~p~k~~~~~s~f~~~~~~~~~~~~-----~~v~rry~df~~l~~-------------------P~K~~~g~~~~~F 80 (393)
.+|+||++++++|..|.....+-....| .+|.||||||.|||+ |+|.+.|+||++|
T Consensus 5 ~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~f 84 (118)
T cd07287 5 YTVTDPRRHPKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESV 84 (118)
T ss_pred EEecCCeEcCCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHH
Confidence 5789999999876544222111111222 479999999999887 4588899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
||+||.+|+.||++|+.||.|..+++|+.||..
T Consensus 85 Ie~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 85 IEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma |
| >cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-18 Score=145.57 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=72.8
Q ss_pred EEEeeCCccccc-cccccccchhhhhc----ccc---ceEecCCCCcccccC--------------CccccccCCC-hHH
Q psy17920 24 SISHFNLEQETE-SCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK--------------REYQKIGRYE-EQF 80 (393)
Q Consensus 24 ~i~v~~p~k~~~-~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~--------------P~K~~~g~~~-~~F 80 (393)
+|+|+||+++++ +.+.|+. +...+. .++ ..|.|||+||.||++ |+|.+.|+++ ++|
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~f 79 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTD-YEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGF 79 (113)
T ss_pred CeEEeCCcEecCCCCCCeEE-EEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHH
Confidence 489999999987 4444331 111111 222 269999999999998 8999999998 999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|++||++|+.||++|+.||+|..++.|+.||+.
T Consensus 80 ie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 80 IEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. |
| >cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-18 Score=145.61 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=70.9
Q ss_pred eEEEeeCCccccc-cccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Cccccc-----cC
Q psy17920 23 LSISHFNLEQETE-SCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKI-----GR 75 (393)
Q Consensus 23 ~~i~v~~p~k~~~-~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~-----g~ 75 (393)
++|+|+||+++++ +.+.|+ .+...+. ..| ..|.|||+||.||++ |+|... |+
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~-~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~ 79 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYI-SYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR 79 (118)
T ss_pred CEEEEeCcccccCCCccCEE-EEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence 5899999999973 222221 1111111 222 369999999999999 788863 58
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
++++||++||++|+.||++|+.||+|+.|+.|+.||+.
T Consensus 80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 99999999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. |
| >cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=144.65 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=76.1
Q ss_pred eEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC---------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK---------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fi 81 (393)
+.|+|+||.+++++.+.|+ .++..+.. .+.+|.||||||+|||+ |+|.+.|+|+++||
T Consensus 1 ~~~~v~~~~~~~~~~~~yv-~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~i 79 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYV-LYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETI 79 (112)
T ss_pred CEEEECCCeEeccCCcCEE-EEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHHH
Confidence 4689999999999777654 23333321 13479999999999999 78999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
++||.+|+.||++|+.||.|..++.|+.||-
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 110 (112)
T cd07301 80 AKRSRAFEQFLCHLHSLPELRASPAFLEFFY 110 (112)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcChHHHHHhC
Confidence 9999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development. |
| >cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-18 Score=144.66 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=75.1
Q ss_pred eEEEeeCCccccccccccccchhhhhccc-----cceEecCCCCcccccC------------------CccccccCCChH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL-----VAVVADQTKKCQTLYK------------------REYQKIGRYEEQ 79 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~-----~~~v~rry~df~~l~~------------------P~K~~~g~~~~~ 79 (393)
-.++|+||++++.+|..|.....+..... ..+|.||||||.|||+ |+|.+.|+++++
T Consensus 3 ~~~~V~d~~~~~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g~~~~~ 82 (117)
T cd06881 3 RSFTVTDTRRHKKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFGRFDAA 82 (117)
T ss_pred EEEEecCcceecCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccCCCCHH
Confidence 46899999999876665533323211122 2479999999999986 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
||++||.+|+.||++|+.||.|..++.|+.||+
T Consensus 83 ~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 115 (117)
T cd06881 83 VIEERRQAILELLDFVGNHPALYQSSAFQQFFE 115 (117)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhc
Confidence 999999999999999999999999999999997
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont |
| >cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-18 Score=146.33 Aligned_cols=91 Identities=19% Similarity=0.403 Sum_probs=71.2
Q ss_pred eEEEeeCCcccccccc-----cc-ccchhhhhc--cc-------cceEecCCCCcccccC--------------Ccccc-
Q psy17920 23 LSISHFNLEQETESCS-----RF-IHGLDSAVK--SL-------VAVVADQTKKCQTLYK--------------REYQK- 72 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s-----~f-~~~~~~~~~--~~-------~~~v~rry~df~~l~~--------------P~K~~- 72 (393)
.+|+|+||++.+++.. .| ++.+.+... .+ ...|.|||+||.||++ |+|.+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 3799999999998421 21 111111111 11 1269999999999999 78886
Q ss_pred -------ccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 73 -------IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 73 -------~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|+|+++|||+||++||.||++|+.||+|+.|++|+.||+.
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 35899999999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of |
| >cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-18 Score=144.43 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=70.1
Q ss_pred EEEeeCCccccccc------ccc-ccchhhhhcc--c---cceEecCCCCcccccC--------------Ccccccc---
Q psy17920 24 SISHFNLEQETESC------SRF-IHGLDSAVKS--L---VAVVADQTKKCQTLYK--------------REYQKIG--- 74 (393)
Q Consensus 24 ~i~v~~p~k~~~~~------s~f-~~~~~~~~~~--~---~~~v~rry~df~~l~~--------------P~K~~~g--- 74 (393)
.|+|+||++++++. +.| ++.+...... + ...|.|||+||.||++ |+|.+.+
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~ 80 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQV 80 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccc
Confidence 48999999998731 111 1111111110 1 1279999999999999 7888864
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 ~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++|||+||++|+.||++|+.||.|+.|+.|+.||+.
T Consensus 81 ~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 81 MQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 479999999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu |
| >cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-18 Score=143.72 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=68.6
Q ss_pred CceEEEeeCCccccccccccccchhhhhc---ccc------ceEecCCCCcccccC----------------Ccccccc-
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK---SLV------AVVADQTKKCQTLYK----------------REYQKIG- 74 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~---~~~------~~v~rry~df~~l~~----------------P~K~~~g- 74 (393)
+.+.|.|+||.+.|++ +.+.|+ +.| .+|+|||+||.|||+ |+|.+.+
T Consensus 1 ~~l~i~vsD~~~~~d~-------V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~ 73 (141)
T cd07291 1 PSLQIDIPDALSERDK-------VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDG 73 (141)
T ss_pred CccEEEeccccccCCC-------EEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccc
Confidence 3689999999999993 333332 222 369999999999999 8998752
Q ss_pred -------------CC-ChHHHHHH--------------HHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 -------------RY-EEQFIEHR--------------KNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 -------------~~-~~~Fie~R--------------r~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+ .++|+++| +++||+||+|||.||+|+.|++|+.||+.
T Consensus 74 ~~~k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 74 PREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred hHHhhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 12 35788866 45699999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting |
| >cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-17 Score=141.93 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=67.6
Q ss_pred ceEEEeeCCccccccccccccchhhhhc---ccc------ceEecCCCCcccccC----------------Ccccccc--
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK---SLV------AVVADQTKKCQTLYK----------------REYQKIG-- 74 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~---~~~------~~v~rry~df~~l~~----------------P~K~~~g-- 74 (393)
.+.|.|+||.+.|++ +.+.|. +.| .+|+|||+||.|||+ |+|...|
T Consensus 2 ~l~v~isD~~~~~d~-------V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~ 74 (141)
T cd07292 2 ALQVDISDALSERDK-------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDAS 74 (141)
T ss_pred ceEEEcccccccCCc-------eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccch
Confidence 589999999999994 333332 233 379999999999998 8887653
Q ss_pred ------------CCChHHHH---------------HHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 ------------RYEEQFIE---------------HRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 ------------~~~~~Fie---------------~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+..++.+ +|+.+||+||+|||.||+|+.|.+|+.||+.
T Consensus 75 ~~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 75 REKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 23334444 7779999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo |
| >COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-15 Score=151.31 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.+..+...++.|++.+..|+++|...+..|++.+++.|++.++++++.+...|..+-+.+.
T Consensus 461 ~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~l~ 522 (524)
T COG5391 461 EQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLD 522 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777788899999999999999999999999999999999999999999999999866554
|
|
| >cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-15 Score=136.83 Aligned_cols=177 Identities=11% Similarity=0.175 Sum_probs=136.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGID--RSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d--~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
.....|.-.++++.-....|.....++++.+ .++|++.+..||.. .+.|++|+..+|++.+.++++...|+.
T Consensus 18 ~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA~ 97 (230)
T cd07625 18 TELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQAT 97 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344555444444444444444444444322 34677777777773 356999999999999999999999999
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhccccH--------------HHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKMEA--------------NRLQEVL 280 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~~--------------~~ve~~~ 280 (393)
.|+..|.|+|.+|++++.+++.+|..|..++..+.++ +|+...+++.. ..+++++
T Consensus 98 ~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~ 177 (230)
T cd07625 98 VDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLS 177 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987765444432 45544444322 3345557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 281 KRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 281 ~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
.+++.||..++.|+.||+.++..||+.++++|+..+|+++.+.+..|+..
T Consensus 178 ~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 178 LKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-17 Score=136.68 Aligned_cols=90 Identities=27% Similarity=0.449 Sum_probs=74.0
Q ss_pred eEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChH--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQ-- 79 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~-- 79 (393)
++|.|+||+++|++.+.|+ .+...+. .. ...|.|||+||.|||. |+|...|+++..
T Consensus 1 ~~~~V~~p~~~~~~~~~y~-~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~ 79 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYV-VYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFE 79 (114)
T ss_pred CEEEEeCcceecCCccCEE-EEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHH
Confidence 5799999999999655433 1221111 11 1379999999999999 899999988765
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
||++||++|+.||++|+.||.|+.|+.|+.||++
T Consensus 80 ~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 80 FIEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 9999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, |
| >KOG2527|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-17 Score=138.98 Aligned_cols=93 Identities=19% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCceEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Ccccccc--CC
Q psy17920 20 DHILSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKIG--RY 76 (393)
Q Consensus 20 ~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~g--~~ 76 (393)
.+-++|.|.||.+++++...|+ .++..+. +.| ++|.|||+||+|||+ |.|.+.- +|
T Consensus 15 ~nfLeI~V~nPrt~~~~~~~yt-dYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~f 93 (144)
T KOG2527|consen 15 ENFLEIDVINPRTHGDGKNRYT-DYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPF 93 (144)
T ss_pred cceEEEEeeCCcccccccccce-eEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCch
Confidence 4569999999999887543332 1222222 334 489999999999999 8887764 33
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
. +|||+||++|+.||+.||.||++..+..|+.||+..
T Consensus 94 r-e~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 94 R-EFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred H-HHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 3 999999999999999999999999999999999864
|
|
| >cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-17 Score=135.94 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=69.5
Q ss_pred EEeeCCcccccccc-ccccchhhhhccccceEecCCCCcccccC--------------Cccccc---------cCCChHH
Q psy17920 25 ISHFNLEQETESCS-RFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKI---------GRYEEQF 80 (393)
Q Consensus 25 i~v~~p~k~~~~~s-~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~---------g~~~~~F 80 (393)
|.|.||.+.+++.+ .|+. +. +......|.|||+||.||++ |+|... |+++++|
T Consensus 2 ~~i~~~~~~~~~~~~~y~~-Y~--I~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~ 78 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIV-YV--IRLGGSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKI 78 (112)
T ss_pred cEEccCccccCCCccCEEE-EE--EEeeeEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHHH
Confidence 78999999988422 2211 11 11122579999999999999 778764 3689999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
||+||++|+.||++|+.||+|+.|+.|+.||+++
T Consensus 79 ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 79 IERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 9999999999999999999999999999999874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back |
| >cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-16 Score=136.91 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred EeeCCcccccccccccc-chhhhhc-------------ccc---ceEecCCCCcccccC----------------Ccccc
Q psy17920 26 SHFNLEQETESCSRFIH-GLDSAVK-------------SLV---AVVADQTKKCQTLYK----------------REYQK 72 (393)
Q Consensus 26 ~v~~p~k~~~~~s~f~~-~~~~~~~-------------~~~---~~v~rry~df~~l~~----------------P~K~~ 72 (393)
.|++|++.|+|.+.|+. .+.+-.. .+| .+|.|||+||.|||+ |+|.+
T Consensus 7 ~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~ 86 (132)
T cd06893 7 TITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRL 86 (132)
T ss_pred eeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccC
Confidence 57899999996655431 1111100 122 279999999999975 55655
Q ss_pred ----ccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 73 ----IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 73 ----~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|++|++|||+||.+||.||++|+.||.|+.|++|+.||..
T Consensus 87 p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 87 FDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 58999999999999999999999999999999999999964
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found |
| >cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-16 Score=130.43 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=67.0
Q ss_pred CCccccccccccccchhhhhccccceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHH
Q psy17920 29 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDY 94 (393)
Q Consensus 29 ~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~r 94 (393)
+|++.|......+ +..-+......|.|||+||.||+. |+|.+.|+++++|+++||++|+.||++
T Consensus 8 ~~~~~g~~~~y~~--Y~i~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~ 85 (105)
T cd06866 8 VPEKKGLFLKHVE--YEVSSKRFKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNL 85 (105)
T ss_pred cccccCcccCCEE--EEEEEecCCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 6888876321111 111111233579999999999998 899999999999999999999999999
Q ss_pred HhcCCCccccccccccccc
Q psy17920 95 VCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 95 v~~HPvL~~~~~~~~FL~~ 113 (393)
|+.||+|+.|+.|+.||+.
T Consensus 86 l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 86 VARHPVLSEDELVRTFLTE 104 (105)
T ss_pred HhcChhhccChHHHhhcCC
Confidence 9999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. |
| >cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-16 Score=133.27 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=68.2
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--c-ceEecCCCCcccccC----------------Cccccc---------
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--V-AVVADQTKKCQTLYK----------------REYQKI--------- 73 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~-~~v~rry~df~~l~~----------------P~K~~~--------- 73 (393)
.++|.|+|.-..++.-+. ....++-...| | .+|+|||+||.|||+ |+|...
T Consensus 2 ~~~~~i~da~~~~~~V~Y-~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~k 80 (141)
T cd06892 2 SLQVDISDALSERDKVKF-TVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQK 80 (141)
T ss_pred ceeeecccccccCCeEEE-EEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeee
Confidence 577888888887772111 11111111122 1 379999999999998 888643
Q ss_pred -----cCCChHHHHHHHHHH---------------HHHHHHHhcCCCccccccccccccc
Q psy17920 74 -----GRYEEQFIEHRKNQL---------------QSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 -----g~~~~~Fie~Rr~~L---------------~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|.|+.+|+++|+.+| ++||+|||.||+|+.+.+|+.||+.
T Consensus 81 lg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 81 LGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred cccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 358899999999999 5899999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som |
| >cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-16 Score=128.91 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=59.8
Q ss_pred cceEecCCCCcccccC---------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 52 VAVVADQTKKCQTLYK---------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 52 ~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
+..|.||||||.|||. |+|.+.|+++++||++||.+|+.||++|++||.|..++.|+.||+.+
T Consensus 35 ~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 35 KVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred eEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 3479999999999999 79999999999999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom |
| >cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-16 Score=128.52 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=58.0
Q ss_pred ceEecCCCCcccccC---------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK---------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.|||+ |.|.+.|+++++||++||.+|+.||++|+.||.|+.|++|+.||+.
T Consensus 36 ~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 36 AFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred EEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 479999999999998 7899999999999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal |
| >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-15 Score=128.69 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=55.9
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+|.||||||.|||+ |+|.+.+ +++||++||++|+.||++|++||.|+.|++|+.||..
T Consensus 47 ~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 47 FMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALFV--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCcccC--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 379999999999999 7899887 8999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-15 Score=125.07 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=74.4
Q ss_pred eEEEeeCCccccccccccccchhhhhccc---cceEecCCCCcccccC------------Cccccc-cCCChHHHHHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL---VAVVADQTKKCQTLYK------------REYQKI-GRYEEQFIEHRKN 86 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~---~~~v~rry~df~~l~~------------P~K~~~-g~~~~~Fie~Rr~ 86 (393)
+.++|.+.+.++++.+.|+ .+...+... ...|.||||||.+||+ |+|.+. |+++++|||+||.
T Consensus 1 ~~~~v~~~~~~~~~~~~y~-vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~ 79 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFA-VYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELPPKRFLSSSLDGAFIEERCK 79 (107)
T ss_pred CeeEEeeeEEEecCCccEE-EEEEEEEECCCceEEEEehHHHHHHHHHHHHhccCCCCCCCCccccCCCCCHHHHHHHHH
Confidence 4689999999998655443 222222221 3479999999999999 899887 6899999999999
Q ss_pred HHHHHHHHHhcCCCccccccccccccc
Q psy17920 87 QLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 87 ~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+.||++|+.||.|..|+.|+.||..
T Consensus 80 ~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 80 LLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 999999999999999999999999964
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom |
| >cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.3e-15 Score=124.69 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=68.3
Q ss_pred EEEeeCCccccccc--cccccchhhhhc-cc----cceEecCCCCcccccC-----------------Ccccccc----C
Q psy17920 24 SISHFNLEQETESC--SRFIHGLDSAVK-SL----VAVVADQTKKCQTLYK-----------------REYQKIG----R 75 (393)
Q Consensus 24 ~i~v~~p~k~~~~~--s~f~~~~~~~~~-~~----~~~v~rry~df~~l~~-----------------P~K~~~g----~ 75 (393)
+|.|.||+.++... +.|+ .+...+. .. ...|.|||+||.|||. |+|.+.+ +
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv-~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~ 82 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYV-VWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVN 82 (120)
T ss_pred EEEcCCCeEECCCCCCCCEE-EEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccccccccc
Confidence 57888888886532 2222 1111111 11 2369999999999988 6788877 8
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
++++|||+||++|+.||++|+.||.|+.|+.|+.||.
T Consensus 83 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 83 LNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 9999999999999999999999999999999999996
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. |
| >cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-14 Score=119.74 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=69.0
Q ss_pred ceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC--------------CccccccCCChHHHHHHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQ 87 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~ 87 (393)
.+.|+|.+.....+..+.|+ .++..+. ....|.||||||.+||+ |+|.+.+ ++++|||+||.+
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yv-vY~I~~~-~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~~ 79 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFV-VYNIYMA-GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQQLDARRRG 79 (106)
T ss_pred cceEecCCcceEcCCCCcEE-EEEEEEc-CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHHHHHHHHHH
Confidence 46777877765554333332 1222222 23479999999999999 7887775 799999999999
Q ss_pred HHHHHHHHhcCCCccccccccccccc
Q psy17920 88 LQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 88 L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+.||+.|+.||+|..|+.|+.||+-
T Consensus 80 Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 80 LEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHhcCcccccCHHHHHHhcc
Confidence 99999999999999999999999973
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface |
| >cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-12 Score=118.96 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=145.8
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc------h-------hHHHHHHH
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID------R-------SHLRDALK 207 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d------~-------s~L~~al~ 207 (393)
..|.+....++....++..+.+++.+|..++.+++++..+ .|+..++.||.. . ..|+++|.
T Consensus 15 ~~p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (246)
T cd07597 15 LLPPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLS 94 (246)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHH
Confidence 3456777888999999999999999999999999887533 233344444441 1 35999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHH--------HHHHHHHHH-H---hhhh--ccc--
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKD--------ILNKKREYE-K---MTTE--NKM-- 271 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~--------al~k~re~e-r---l~~e--~k~-- 271 (393)
.+|..+..++++..+++......+.|.|+.|.+++.|++++|..|.. +..++...+ | +... ++.
T Consensus 95 ~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e 174 (246)
T cd07597 95 SLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAE 174 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhH
Confidence 99999999999999999999999999999999999999999998773 222222221 1 1111 111
Q ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 272 ----------EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 272 ----------~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+..++.....|.-.+..|++.|+.+||.... .+..++++|+..|+.+|.+.+..|....+.
T Consensus 175 ~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~ 245 (246)
T cd07597 175 VDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPK 245 (246)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1133444455788888999999999999997 999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-14 Score=121.96 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=58.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||+ |+|.+.|+++++||++||.+||.||+.|+.||.|+.|+.|+.||+.
T Consensus 44 w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 44 WSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP 118 (119)
T ss_pred eEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence 379999999999999 8999999999999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N |
| >cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-14 Score=121.41 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred ceEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQF 80 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~F 80 (393)
++.++|.||++.|++.+.|+. +...+. .. +..|.|||+||.|||. |.|.+.|+++++|
T Consensus 4 ~~~~~i~~~~~~~~~~~~y~~-Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~~ 82 (120)
T cd06873 4 KLTAVIINTGIVKEHGKTYAV-YAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRAF 82 (120)
T ss_pred EEEEEEeccEEEccCCceEEE-EEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHHH
Confidence 578999999999997666532 222222 11 2379999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~F 110 (393)
|++||.+|+.||+.|+.+|.|..+++++.+
T Consensus 83 ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~ 112 (120)
T cd06873 83 LEKRRKMLNQYLQSLLNPEVLDANPGLQEI 112 (120)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccCHHHHHH
Confidence 999999999999999999999999654443
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug |
| >cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-14 Score=122.17 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|.||||||+|||+ |+|...|+++++|||+||.+||.||++|+.||.|+.++.++.||+.
T Consensus 64 ~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLel 137 (138)
T cd06879 64 GVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLEL 137 (138)
T ss_pred eeecCchHHHHHHHHHHHHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCC
Confidence 59999999999999 7999999999999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-14 Score=119.32 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=57.9
Q ss_pred eEecCCCCcccccC-------------Ccccccc-CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK-------------REYQKIG-RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|.|||+||.|||. |+|.+.| +++++||++||.+|+.||++|+.||.|..++.++.||+.
T Consensus 35 ~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~ 108 (109)
T cd06870 35 FVFRRYAEFDKLYESLKKQFPASNLKIPGKRLFGNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQM 108 (109)
T ss_pred EEEeehHHHHHHHHHHHHHCcccCcCCCCCcccccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCc
Confidence 69999999999998 8999999 999999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity. |
| >cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-14 Score=119.33 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=57.1
Q ss_pred ceEecCCCCcccccC-------------Ccccccc-CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-------------REYQKIG-RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.|||. |+|.+.| +++++||++||.+|+.||++|+.||.|+.++.++.||..
T Consensus 35 ~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~ 109 (110)
T cd07276 35 WFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCL 109 (110)
T ss_pred EEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhcc
Confidence 369999999999999 8898887 699999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. |
| >cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-13 Score=115.36 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=57.5
Q ss_pred ceEecCCCCcccccC--------------Ccccccc--CCChHHHHHHHHHHHHHHHHHhcCC--Cccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIG--RYEEQFIEHRKNQLQSFVDYVCRHP--VLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g--~~~~~Fie~Rr~~L~~fl~rv~~HP--vL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||. |+|.+.| +++++|||+||.+|+.||+.|+.|| .|+.|+.|+.||+.
T Consensus 29 ~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 29 YTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred EEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 479999999999998 8999887 9999999999999999999999999 99999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. |
| >cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-14 Score=118.47 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=59.2
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.|||+ |+|.+.|+++++||++||.+|+.||++|+.||.|+.++.++.||+.+
T Consensus 38 w~V~RRYsdF~~Lh~~L~~~~~~~plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 110 (120)
T cd06871 38 WQVIRRYNDFDLLNASLQISGISLPLPPKKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPN 110 (120)
T ss_pred eEEEeeHHHHHHHHHHHHHcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcc
Confidence 379999999999998 89999999999999999999999999999999999999999999854
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-13 Score=113.26 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred ceEecCCCCcccccC-------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.+||. |+|.+.|+++++||++||.+|+.||+.|+.||.+..++.|..||...
T Consensus 31 w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~ 105 (116)
T cd06875 31 WTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFH 105 (116)
T ss_pred EEEEecHHHHHHHHHHHHHHcCcccCcCCCccccCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence 379999999999999 89999999999999999999999999999999999999999999876
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a |
| >cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-13 Score=110.47 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.+|+. |+|.+.+ ++++|||+||.+|+.||+.|+.||.|..++.++.||..
T Consensus 29 ~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 29 LHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred EEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 358889999998888 7888774 88999999999999999999999999999999999964
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me |
| >KOG1660|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-10 Score=108.87 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCC----ccchhHhHHHHHHHH
Q psy17920 88 LQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSIS----HFNLEQETESCSRFI 163 (393)
Q Consensus 88 L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~----~~~~d~~~d~f~~~l 163 (393)
=+.||+||+.||+|+.|..|..||+.+.+. ..+-.++.+..| +|++.+...+..+. ..++++.++.=+.|+
T Consensus 137 hEvfl~RlaahPvlr~d~nf~vflEy~qdL----svr~KNkkE~~~-~f~k~~~kSAdeillSg~lkdVddFfe~ek~fl 211 (399)
T KOG1660|consen 137 HEVFLRRLAAHPVLRLDQNFSVFLEYDQDL----SVRGKNKKESFG-GFLKRFVKSADEILLSGKLKDVDDFFETEKNFL 211 (399)
T ss_pred HHHHHHHHhcCCeeecccchhhhhhhcccc----cccccchhhhhh-HHHHHHhhhhhheeeecceeehhHHHHhhhHHH
Confidence 367999999999999999999999986222 122222333333 56666554332221 456788888888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHH
Q psy17920 164 HGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID--------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235 (393)
Q Consensus 164 ~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d--------~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L 235 (393)
..+...+..-.--+.++.+.|. ..+.+|..+|+- ...++..+..+|+.++....+...-+......|.+.|
T Consensus 212 ~ey~~~ikdas~kadKmt~~hK-~~~ddy~~i~~~~~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l 290 (399)
T KOG1660|consen 212 KEYHFRIKDASLKADKLTRAHK-SVGDDYDQIGNRLNRLGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTL 290 (399)
T ss_pred HHHhhHHhhhccchHHhhhhcc-cccccHHHHHHHHHHhhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHh
Confidence 8888777655544555443332 234467766661 1124444555555666655543333322335689999
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 236 HIYKGIITSMPDILGLHKDILNKKREYEKM----TTENKM---EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAA 308 (393)
Q Consensus 236 ~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~ 308 (393)
+-|.+-..+.++.+-.+...|..+..+.|. ...+|- .+..-.++=+.||.||.+.+.|+--|...|+.-|+.-
T Consensus 291 ~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~kn 370 (399)
T KOG1660|consen 291 RYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAKNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKN 370 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999999999998888877765432 222221 1233344455799999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 309 MKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 309 l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
|.++++..|++.+-...-...-.
T Consensus 371 l~el~eleikhak~~~~ll~~~~ 393 (399)
T KOG1660|consen 371 LVELSELEIKHAKTNYSLLRQCL 393 (399)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998776665544443
|
|
| >PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-10 Score=104.04 Aligned_cols=93 Identities=35% Similarity=0.562 Sum_probs=74.9
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFL 313 (393)
Q Consensus 234 ~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl 313 (393)
.|.-|-.++..-+..+...+.+ .|+. .+||++..+++.+++||+.|++++++||+|||.+|+.||+.+|+.||
T Consensus 143 lL~~~pdii~~hk~A~~k~ke~-~kl~------~e~K~~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL 215 (237)
T PF10456_consen 143 LLSNFPDIISVHKGALQKVKEC-EKLS------DEGKMSQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYL 215 (237)
T ss_dssp HHHTHHHHHHHHHHHHHHCTCH-HHHH------HTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhCccHHHHHHHHHHHHHHH-HHHH------hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443332 2332 38999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhHHHHHHh
Q psy17920 314 TEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 314 ~~qi~~~qk~a~~~~~~~~~ 333 (393)
+.||.||++++..|+.+.+.
T Consensus 216 ~~Qi~Fyq~i~~kLe~a~~~ 235 (237)
T PF10456_consen 216 QQQIAFYQQIAEKLEQALQQ 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988653
|
This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A. |
| >cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-12 Score=108.29 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.|||. |+|...|+++++|||+||.+||.||+.|+.| .+..++.|..||+-.
T Consensus 32 w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 32 WNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFVEERRKRLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred EEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 479999999999999 8999999999999999999999999999999 777788788888743
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways. |
| >cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-12 Score=106.15 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+|.|||+||.+||. |+|.+ |+++++||++||.+||.||+.|+.||. .+..|..||+.+
T Consensus 33 ~~v~RRYseF~~Lh~~L~~~~~~p~~P~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~ 102 (110)
T cd06880 33 HTVEKRYSEFHALHKKLKKSIKTPDFPPKRV-RNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVR 102 (110)
T ss_pred EEEEccHHHHHHHHHHHHHHCCCCCCCCCCc-cCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCC
Confidence 479999999999998 88886 778999999999999999999999998 589999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. |
| >cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-12 Score=107.94 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred ceEEEeeCCcccccccccc-ccchhhhhccc-cceEecCCCCcccccC----------------------CccccccCCC
Q psy17920 22 ILSISHFNLEQETESCSRF-IHGLDSAVKSL-VAVVADQTKKCQTLYK----------------------REYQKIGRYE 77 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f-~~~~~~~~~~~-~~~v~rry~df~~l~~----------------------P~K~~~g~~~ 77 (393)
.++++|.|+++... ...| ++.++...... ...|.|||+||.+||. |+|.+.|+.+
T Consensus 3 ~i~~~I~~~~~~~~-~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~~~~ 81 (123)
T cd06882 3 AVSATIADIEEKRG-FTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVGRKA 81 (123)
T ss_pred cEEEEEeeeeEEeC-CCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecCccH
Confidence 47899999987633 2221 11111111111 2379999999999988 4577777755
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
+|+++||.+|+.||+.|+++|. ++.|++++.||..+
T Consensus 82 -~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~ 118 (123)
T cd06882 82 -EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQT 118 (123)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCC
Confidence 9999999999999999999985 99999999999876
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox |
| >cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-12 Score=108.35 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=56.4
Q ss_pred eEecCCCCcccccC----------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK----------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~----------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|.|||+||++||+ |+|...++++++|||+||.+|+.||+.|+.||.|..++.|..||.-
T Consensus 51 ~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 51 VVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred EEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 79999999999999 5688888889999999999999999999999999999999999963
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S |
| >cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-12 Score=108.07 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=56.5
Q ss_pred ceEecCCCCcccccC--------------CccccccCC--ChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRY--EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~--~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
..|.|||+||.+||. |.|...|.. +++||++||.+|+.||+.|+.||.++.++.++.||+
T Consensus 57 w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 57 WVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred EEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 479999999999999 889988865 899999999999999999999999999999999996
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul |
| >cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=105.29 Aligned_cols=88 Identities=32% Similarity=0.577 Sum_probs=75.7
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|=+.++.+.+-+..+++. .|.- .+||++..+.+.+++||+.||+++.+||+|||.+|+.|||.+|+
T Consensus 118 fPDii~v~KgA~~KvKE~--------~k~~------~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~ 183 (207)
T cd07670 118 FPDIIHVQKGALTKVKES--------KKHV------EEGKMELQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQ 183 (207)
T ss_pred CCchHHHhHHHHHHHHHH--------HHHH------HhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556777777777766663 2222 27999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHH
Q psy17920 311 SFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.||.||++++...+....
T Consensus 184 ~yL~~QI~Fyq~v~~kl~~~l~ 205 (207)
T cd07670 184 HFLQQQIRFFQKVTQKLEEALQ 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=105.27 Aligned_cols=90 Identities=27% Similarity=0.506 Sum_probs=77.4
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|-+.++.+.+-+..+++. .|.- .+||++..+++.+++||+.||+.+.+||+|||.+|+.|||++|+
T Consensus 118 fPDIi~v~KgA~~KvkE~--------~k~~------~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~ 183 (210)
T cd07668 118 FPDIIGAHKGAIEKVKES--------DKLV------ATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIR 183 (210)
T ss_pred CccHHHHHHHHHHHHHHH--------HHHh------hhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666663 2222 27999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 311 SFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
.||+.||.||++++...++..+..
T Consensus 184 ~yL~eQi~Fyq~v~~kl~~~l~~y 207 (210)
T cd07668 184 LYLEQQVQFYETIAEKLRQALSRF 207 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi |
| >cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=104.51 Aligned_cols=88 Identities=27% Similarity=0.523 Sum_probs=75.9
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|-+.++.+.+-+..+++. .|.- .+||++..+++.++.||+.||..+.+||+|||.+|+.||+++|+
T Consensus 118 fPDii~v~K~A~~KvkE~--------~k~~------~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~ 183 (207)
T cd07669 118 FPDIIHLQKGAFAKVKES--------QRMS------DEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQ 183 (207)
T ss_pred CccHHHHHHHHHHHHHHH--------HHhh------HHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777766663 2222 27899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHH
Q psy17920 311 SFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.||.||++++...++...
T Consensus 184 ~yL~eQi~Fyq~v~~kle~al~ 205 (207)
T cd07669 184 HYLRQQIIFYQRVSQQLEKTLR 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >smart00312 PX PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-11 Score=100.50 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=52.7
Q ss_pred ceEecCCCCcccccC--------------Ccccccc---CCChHHHHHHHHHHHHHHHHHhcCCCccc-ccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIG---RYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g---~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~-~~~~~~FL~ 112 (393)
..|.|||+||.|||. |.|.+.| +++++++++|+.+|+.||+.|+.||.+.. |+.+..||+
T Consensus 28 ~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 28 WTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred EEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 368888888888877 6777765 57999999999999999999999999999 999999985
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. |
| >cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-11 Score=103.02 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=49.2
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||. |+|.. .|+|+||.+|+.||++|+.||.|+.|+.|+.||+.
T Consensus 50 ~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 50 IYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFLTS 118 (119)
T ss_pred eEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhhCC
Confidence 479999999999998 44443 68999999999999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-11 Score=100.00 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=71.8
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccC---CChHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGR---YEEQFIE 82 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~---~~~~Fie 82 (393)
.+.|+|.|+.+.+. ...++..++.-.... ...|.|||+||.+||. |+|...+. .+.++++
T Consensus 3 ~~~v~v~~~~~~~~-~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~ 81 (113)
T PF00787_consen 3 IIQVSVVDPETSGN-KKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFIE 81 (113)
T ss_dssp EEEEEEEEEEEESS-SSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHHH
T ss_pred EEEEEEcCCEEEcC-CCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHHH
Confidence 47899999998844 222222222222222 3479999999999999 78887764 8999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+.+|+.||+.|+.||.+..++.+..||+.
T Consensus 82 ~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 82 ERRQALEKYLQSLLSHPELRSSEALKEFLES 112 (113)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence 9999999999999999999999999999985
|
PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A .... |
| >cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-10 Score=95.30 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=56.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
..|.|||+||.|||+ |+|...|+.+++++++|+.+|+.||+.|+.||.+..++.+..||+
T Consensus 32 ~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 32 WTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred EEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 479999999999998 888888888999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. |
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-07 Score=83.78 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---h--HHHHHHHHHHHHHHHHHHHHhcCccccccchhH
Q psy17920 159 CSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDR---S--HLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233 (393)
Q Consensus 159 f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d~---s--~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e 233 (393)
+...++.|....+.+......+.. ....|+..+.++|.+. + .|..++..+|.+...++.....+.+.-...+.+
T Consensus 5 ~~~~~~kl~k~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~ 83 (194)
T cd07307 5 LEKLLKKLIKDTKKLLDSLKELPA-AAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444332 2345777888888842 1 388999999999999999888887777788999
Q ss_pred HHHHHH-hHHhhhhhHHHHHHHHHH-------HHHHHHHhh-hhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 234 VLHIYK-GIITSMPDILGLHKDILN-------KKREYEKMT-TENKM--EANRLQEVLKRTDTVSYALLGEINHFHQEQV 302 (393)
Q Consensus 234 ~L~ey~-~ll~s~~~v~~~~~~al~-------k~re~erl~-~e~k~--~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~ 302 (393)
+|..|. +.+..+++....+..+.. ++..+.+-. .++++ .+.+++.++.+++.++..+..+|..|+..+.
T Consensus 84 pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~ 163 (194)
T cd07307 84 PLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRK 163 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 888888888777665433 332221100 11222 2478999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 303 SQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 303 ~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
.+|...|..|++.|+.||++++..|...
T Consensus 164 ~~~~~~L~~~~~~q~~~~~~~~~~~~~l 191 (194)
T cd07307 164 ELFLSLLLSFIEAQSEFFKEVLKILEQL 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 9999999999999999999999988765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-10 Score=94.04 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=61.4
Q ss_pred eEEEeeCCccccccccccccchhhhhc--cccceEecCCCCcccccC--------------CccccccCCChHHHHHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKN 86 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~ 86 (393)
++|+|.++...+.+...++ .+...+. .....|.|||+||.+||. |.|.+.|+.+++|||+||.
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~-vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~ie~Rr~ 79 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHF-EFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVAKERRR 79 (127)
T ss_pred CEEEECCeEEecCCCCcEE-EEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHHHHHHH
Confidence 3678888776655322211 1111111 112379999999999999 8999999999999999999
Q ss_pred HHHHHHHHHhc-CCCccccccc
Q psy17920 87 QLQSFVDYVCR-HPVLCRSPVW 107 (393)
Q Consensus 87 ~L~~fl~rv~~-HPvL~~~~~~ 107 (393)
+|+.||+.|.. .|.+..|+.+
T Consensus 80 ~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 80 QLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHhchhccCCccc
Confidence 99999999886 5777777744
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso |
| >cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.5e-10 Score=92.37 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=52.9
Q ss_pred ceEecCCCCcccccC--------------CccccccC-CChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGR-YEEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~-~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
..|.|||+||.+||. |.|...|+ .+++|+++|+.+|+.||+.|..+| .++.|+.+..||.
T Consensus 32 ~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~ 107 (109)
T cd06883 32 SFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFFH 107 (109)
T ss_pred EEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcC
Confidence 478999999999998 67777774 467899999999999999999986 9999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d |
| >PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-06 Score=75.94 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHH
Q psy17920 163 IHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGID-RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235 (393)
Q Consensus 163 l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~d-~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L 235 (393)
+...+.++..|+.....+.++.+ ..+++....++.. .+.++.+|..+|+++..+.+..+-+.+.-...+.++|
T Consensus 20 i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL 99 (219)
T PF06730_consen 20 ITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPL 99 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455555555555555555432 2345555555553 4458889999999999998876666555556789999
Q ss_pred HHHHhHHhhhhhHHHHH----HHHHHHHHHHHHhhh---hc--cccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 236 HIYKGIITSMPDILGLH----KDILNKKREYEKMTT---EN--KMEA--NRLQEVLKRTDTVSYALLGEINHFHQEQVSQ 304 (393)
Q Consensus 236 ~ey~~ll~s~~~v~~~~----~~al~k~re~erl~~---e~--k~~~--~~ve~~~~~~e~is~~v~~E~~rF~~ek~~D 304 (393)
+.|-..+...++=+... ..-+.+.+.++++.. .+ .+++ .++..+.......+..+..-|+.|+..|..|
T Consensus 100 ~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~D 179 (219)
T PF06730_consen 100 SQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKD 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877755443 333445555555421 11 1333 4555566666666778888899999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 305 INAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 305 fk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+|.+|.+|+..++.||-|.++.+...++.+.
T Consensus 180 lK~i~sdFv~iEM~fHaKALEv~T~a~q~i~ 210 (219)
T PF06730_consen 180 LKKIFSDFVTIEMVFHAKALEVYTAAYQDIQ 210 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998775
|
Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown. |
| >PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-05 Score=73.10 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-- 262 (393)
++..+..+|.. ...++.++..++.+...++....+....--..+.++|+.|...+..+...+..+......+..+
T Consensus 73 l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~ 152 (229)
T PF03114_consen 73 LADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARS 152 (229)
T ss_dssp HHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455542 2237888999998888887655443222234688999999999999988888777654444332
Q ss_pred --HHhhh-hcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 263 --EKMTT-ENKME-ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 263 --erl~~-e~k~~-~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
+++.. .++.. ..+++.++..++.++..+..+|..|...+..-+...|..|+..|..||++++..+....+.|
T Consensus 153 k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 153 KLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211 11111 68899999999999999999999999998888889999999999999999999999998776
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A .... |
| >cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-08 Score=86.53 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++++||.+||.||+.|..+|.+..++.+..||+.
T Consensus 103 ~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 103 SEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 6899999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr |
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-05 Score=71.74 Aligned_cols=51 Identities=31% Similarity=0.507 Sum_probs=47.4
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++.+..+.+.|++.+.+|+.||+.+|+.||+.+|.+|++.||.||+++
T Consensus 158 e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~ 208 (218)
T cd07596 158 ESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKI 208 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-08 Score=82.70 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=63.3
Q ss_pred EEEeeCCccccccccccccchhhhhcc--ccceEecCCCCcccccC--------------CccccccC-CChHHHHHHHH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKS--LVAVVADQTKKCQTLYK--------------REYQKIGR-YEEQFIEHRKN 86 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~~v~rry~df~~l~~--------------P~K~~~g~-~~~~Fie~Rr~ 86 (393)
.|+|-+-+|.-...+.+++.++.--.+ .+..|.|||+||.+||. |.|...|| .++++.|+|+.
T Consensus 3 ~v~v~~~~kr~~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~~ 82 (111)
T cd06884 3 RVTVVGFQKRYDPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRKQ 82 (111)
T ss_pred EEEEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHHH
Confidence 456666666544222222222211111 12479999999999988 67877785 46789999999
Q ss_pred HHHHHHHHHhc-CCCcccccccccccc
Q psy17920 87 QLQSFVDYVCR-HPVLCRSPVWQHFIT 112 (393)
Q Consensus 87 ~L~~fl~rv~~-HPvL~~~~~~~~FL~ 112 (393)
+|+.||+.|.. +|.+++|+.+..|+.
T Consensus 83 ~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 83 DIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 99999999988 579999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a |
| >cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00022 Score=67.02 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=44.9
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
...+..+++|.+.||+.+..|+++|+.+|+.||+.+|..||+.||.+-+.
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~ 211 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQ 211 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999997654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh |
| >cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-07 Score=78.69 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=48.7
Q ss_pred eEecCCCCcccccC------C---------------ccccccCCChHHHHHHHHHHHHHHHHHhcCC-Cccccccccccc
Q psy17920 54 VVADQTKKCQTLYK------R---------------EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFI 111 (393)
Q Consensus 54 ~v~rry~df~~l~~------P---------------~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL 111 (393)
.|.|||+||..||. | ++.+.+..+.+++++||.+|+.||+.+..+| .++.|+.++.|+
T Consensus 30 ~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff 109 (112)
T cd06890 30 YLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFF 109 (112)
T ss_pred EEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHc
Confidence 68888888888877 2 2222333578999999999999999999999 999999999998
Q ss_pred c
Q psy17920 112 T 112 (393)
Q Consensus 112 ~ 112 (393)
.
T Consensus 110 ~ 110 (112)
T cd06890 110 A 110 (112)
T ss_pred C
Confidence 6
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p |
| >cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=67.13 Aligned_cols=49 Identities=10% Similarity=0.371 Sum_probs=43.2
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++..+.+.+.++-.+.+|+.+|+.+|..|||.++..|+..||.||+++
T Consensus 142 ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~ 190 (200)
T cd07624 142 EVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQC 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788999999999999999999999999999999976
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00014 Score=66.29 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=45.3
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++..+.+.+.++-.+.+|+.+|+.++..||+.+|..|...||.||+++
T Consensus 127 ~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~ 175 (185)
T cd07628 127 EVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGL 175 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999975
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.2e-07 Score=75.86 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=57.7
Q ss_pred EEeeCCccccccccccccchhhhhccccc-eEecCCCCcccccC-----------------------CccccccCC-ChH
Q psy17920 25 ISHFNLEQETESCSRFIHGLDSAVKSLVA-VVADQTKKCQTLYK-----------------------REYQKIGRY-EEQ 79 (393)
Q Consensus 25 i~v~~p~k~~~~~s~f~~~~~~~~~~~~~-~v~rry~df~~l~~-----------------------P~K~~~g~~-~~~ 79 (393)
|+|-|-+|.-...+.|++.++...++.+. .|.|||+||.-||. |+|...||- ..+
T Consensus 4 ~~v~~~ekr~~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~ 83 (119)
T cd06888 4 VKVIDVEKRRAPSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRD 83 (119)
T ss_pred EEEEEEEEEecCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHH
Confidence 45555555543222233222222222222 57777777766665 566667753 367
Q ss_pred HHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
+.++|+..|+.||+.+.+-| .++.|+.+..|.+
T Consensus 84 ~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~ 117 (119)
T cd06888 84 VAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFE 117 (119)
T ss_pred HHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcC
Confidence 99999999999999988887 8889999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains |
| >cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0025 Score=59.33 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.++..++.....+|-.+..||..|..+|+.|||.....|+..|+.||.++
T Consensus 142 ~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~ka 191 (211)
T cd07598 142 SELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKA 191 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999999999999999999764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-06 Score=73.06 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=36.4
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHHh-cCCCcccccccccccccc
Q psy17920 68 REYQKIGRYEEQFIEHRKNQLQSFVDYVC-RHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 68 P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~-~HPvL~~~~~~~~FL~~~ 114 (393)
|.|.+.|+ .++.|+||.+|+.||+.+. .+|.++.|+.++.|+...
T Consensus 71 P~k~~~~~--~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 71 PAPKWFDG--QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred CCCcccCc--chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 44444454 4999999999999999985 567999999999999753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one |
| >smart00721 BAR BAR domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=61.40 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhH-HHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhhh-c----
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD-VLHIYKGIITSMPDILGLHKDILNKKREY----EKMTTE-N---- 269 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e-~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~e-~---- 269 (393)
+.+..+|..+|.++..+++...+. ..-...+.. ++..+...+..+......+......+..+ +++... +
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~ 169 (239)
T smart00721 91 SSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKD 169 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChh
Confidence 348889999999999888755444 212222333 33344455555555544444332222211 111111 1
Q ss_pred -cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 270 -KM--EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 270 -k~--~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++ ...+++.++..++.++..+..||..|...+..-+...+.+|+..|..||.++...+....+.+
T Consensus 170 ~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 170 EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 247889999999999999999999999999888999999999999999999999888876654
|
|
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0059 Score=57.24 Aligned_cols=50 Identities=18% Similarity=0.417 Sum_probs=44.8
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..++.++.+.+.||=.+..|+.+|+.+|+.||+.++..|+..||.+|+++
T Consensus 177 ~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~ 226 (236)
T PF09325_consen 177 RRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKM 226 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999999999999875
|
This is the C-terminal dimerisation domain []. |
| >cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0084 Score=55.43 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++..+.+.+..+-.+.+|+.+|+.++..||+.++..|..-||.||+++
T Consensus 139 ~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~ 189 (201)
T cd07622 139 EEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKG 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888899999999999999999999999999999999999985
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and |
| >cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.007 Score=57.21 Aligned_cols=59 Identities=15% Similarity=0.376 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 327 KKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 327 ~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.-.++|.. +++.++++++...-.+.||+..|+..+..||+.++..|...||.||+++
T Consensus 172 rre~~~kLe~-------~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~ 230 (240)
T cd07667 172 RKEERPKVPT-------DVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKC 230 (240)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555553 3788888889999999999999999999999999999999999999986
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.017 Score=53.84 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=44.0
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
....++++-+-||-.+--|+..|+.+|+.||+.++..|+..||.+++.+
T Consensus 158 ~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ 206 (216)
T cd07627 158 RASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKEL 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999999999999865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0054 Score=57.43 Aligned_cols=143 Identities=10% Similarity=0.186 Sum_probs=101.6
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH-
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+. ...++.+.+.++.. +..| ++
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l--~~dik~i~k~RKkL-e~rRLd~D 145 (223)
T cd07615 69 LGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQ--DKDLKEIGHHLKKL-EGRRLDFD 145 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHH
Confidence 44444455553 45699999999999999998765554333355777777442 24445554444432 2222 21
Q ss_pred -HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 -EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 -erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++....+++.++.+|+.....+...|.-|-..- .|.-.-|..|++.|++||++++.....+.+.|.
T Consensus 146 ~~K~-r~~k~~~eE~~~A~~kfees~E~a~~~M~n~le~e-~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 146 YKKK-RQGKIPDEEIRQAVEKFEESKELAERSMFNFLEND-VEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQ 217 (223)
T ss_pred HHHH-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 13666689999999999999999999999886653 577888999999999999999999999887776
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e |
| >cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.018 Score=53.58 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=83.7
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+.++|.+|......++..+..|...+-.+.. ++++. .+.|+. +++++.++..++.++..++.|+-.|
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L 169 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPAL 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 468999999999999998888777654433322 12332 122332 3889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
..-|+.=|...+.+++..|..||..++........-|
T Consensus 170 ~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~ 206 (211)
T cd07588 170 YDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVM 206 (211)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776665544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th |
| >cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.021 Score=52.82 Aligned_cols=178 Identities=12% Similarity=0.116 Sum_probs=109.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDW 228 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~ 228 (393)
.+..++.++..+++|-...+.+......++.. ...|.....++|.. ...++.+|...|++...+...+..-.++--
T Consensus 7 ~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a-~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~ 85 (200)
T cd07603 7 VEADVSELETRLEKLLKLCNGMVDSGKTYVNA-NSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666655444332 23466677777763 334888899999888887764332222222
Q ss_pred cchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhhhh--cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMTTE--NKME-----ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 229 ~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~~e--~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
..+.++|..++. -|..+++.=....++..++..+ .|.... .|.+ ..++...++-+...+-..-.-++-.+.
T Consensus 86 ~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~ 165 (200)
T cd07603 86 RTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNILTATRSCFRHTALDYVLQINVLQA 165 (200)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666533 3455554433333332333222 121111 2211 145666666777777666777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
-|..||-+.|..|+..|..|||++...+...
T Consensus 166 kKk~e~le~ll~~~~A~~tff~qG~el~~dl 196 (200)
T cd07603 166 KKRHEILSTLLSYMHAQFTFFHQGYDLLEDL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 9999999999999999999999998887765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0081 Score=56.40 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--HHhhhhccccHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY--EKMTTENKMEANRL 276 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~--erl~~e~k~~~~~v 276 (393)
.+.++.||...|.++.+||+....+...--..|.++|.... -..++.+.+.++..-.+.=+. .|-. -+|....++
T Consensus 83 ~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l--~~dik~i~k~RKkLe~rRLdyD~~k~k-~~k~~eeEl 159 (223)
T cd07592 83 DSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQ--DKDLKEINHHRKKLEGRRLDYDYKKRK-QGKGPDEEL 159 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCchHHH
Confidence 45699999999999999998766553333345666666432 344555555554432222122 1111 134557899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.++.+|+.....+...|..|-.. -.+.-.-|..|++.|++||++++.....+...|.
T Consensus 160 ~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 160 KQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 3588889999999999999999999999887776
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra |
| >cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0022 Score=59.94 Aligned_cols=144 Identities=13% Similarity=0.186 Sum_probs=103.2
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+ +...++.+.+.+++.-.+.=++
T Consensus 69 Lg~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~--~~~dik~i~k~RKkLe~rRLd~D~ 146 (223)
T cd07613 69 LAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNL--HDKDLREIQHHLKKLEGRRLDFDY 146 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444442 4569999999999999999876555433335677787776 3445566555554432221121
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++....+++.++.+|+.-...+...|.-|-..-. +.-.-|.+|++.|++||.+++.....+.+.|.
T Consensus 147 ~K~-r~~k~~eeElr~A~~kFees~E~a~~~M~n~l~~e~-e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 147 KKK-RQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLEYHKQATQILQQVTVKLE 217 (223)
T ss_pred HHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 135667899999999999999999999999877754 66678999999999999999999999887776
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i |
| >cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.2e-05 Score=66.79 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCC-ChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRY-EEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~-~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
..|.|||++|.-||. |.|.+.||- ..+-.|+|+.+|+.||+.+.+-| -++.|+.+..|+.
T Consensus 32 ~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 32 SFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 346666666666665 566667763 25789999999999999877766 8888988888864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.8e-05 Score=65.78 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred cccccccchhhhhccccceEecCCCCcccccCCccccccCCC-hHHHHHHHHHHHHHHH-HHhcCCCcccccccccccc
Q psy17920 36 SCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYE-EQFIEHRKNQLQSFVD-YVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 36 ~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~P~K~~~g~~~-~~Fie~Rr~~L~~fl~-rv~~HPvL~~~~~~~~FL~ 112 (393)
+|++|..+++.+...||...+|.+| .|.+.|+-+ .+-.|+|+.+|+.||. -+...|-++.|+.+..|+.
T Consensus 37 rY~eF~~Lh~kLk~~FP~~~lP~LP--------~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 37 TFEEFQELHNKLRLLFPSSKLPSFP--------SRFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred eHHHHHHHHHHHHHHCccccCCCCC--------CCcccCccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 3455555555555555544444444 556667644 6899999999999995 5788889999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai |
| >cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.014 Score=55.47 Aligned_cols=49 Identities=12% Similarity=0.386 Sum_probs=43.4
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++....+++..|-++-+||.+|+.+|+.||+.+.-.|+..||..|+++
T Consensus 185 ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 185 EIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667778889999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.016 Score=52.98 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHhhccChh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 347 EVLKRTDTV-SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 347 ~~~~r~~~~-s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
...++-..| +-.+.+|+.+||.+|..||+.++.+|..-||.+|++.
T Consensus 131 ~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~ 177 (187)
T cd07629 131 VAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQN 177 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556 5899999999999999999999999999999999874
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.03 Score=52.64 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=84.4
Q ss_pred chhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-------hcccc--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 230 PLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-------ENKME--ANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 230 ~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-------e~k~~--~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
.+.++++.|......++..+..|...+..+..+ +++.. ..|+. +++++.++..++.++..++.|+-.
T Consensus 95 ~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~ 174 (225)
T cd07590 95 TFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPK 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 579999999999999999888776544333322 22211 13443 278999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|-.-|+.=|.-.+.++...|..||..+......+...+.
T Consensus 175 l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 175 FYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999888766665554
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=4.1e-05 Score=73.92 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=47.8
Q ss_pred eEecCCCCcccccC-------------CccccccCCChHHHHHHHHHHHHHHHHHh-cCCCcccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK-------------REYQKIGRYEEQFIEHRKNQLQSFVDYVC-RHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 54 ~v~rry~df~~l~~-------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~-~HPvL~~~~~~~~FL~~~ 114 (393)
.|-|||+||.-||+ |+|.++|+-++.|+|+||..|+-||+.+. .-|-.. -..+-+||...
T Consensus 42 ~v~~ry~df~~lheklv~e~~i~k~llppkk~ig~~~~s~~e~r~~~leiylq~ll~~f~~~~-pr~la~fl~f~ 115 (490)
T KOG1259|consen 42 LVERRYRDFANLHEKLVGEISISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYFRTEL-PRALAEFLDFN 115 (490)
T ss_pred eehhhhhHHHHHHHHhhhhheeccccCCchhhcCCCChhHHHHHHHHHHHHHHHHHHHccccC-HHHHHHHhccc
Confidence 69999999999998 99999999999999999999999999653 344221 23456666543
|
|
| >cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=54.41 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-------HHhhhhccc
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-------EKMTTENKM 271 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-------erl~~e~k~ 271 (393)
.+.+..||...|++..+||.+...-...--..|.++|..+.. -++++...++..-.+.=++ ++...++..
T Consensus 70 dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~ 146 (215)
T cd07593 70 DSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA---EMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSR 146 (215)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 456999999999999999986443322223456666666653 3566555544421111111 111222333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 272 EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 272 ~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
...+++.++.+|+.-...+...|.-|-..- .+.-.-|..|++.|+.||++++.....+..
T Consensus 147 ~eeElr~Ae~kfees~E~a~~~M~~i~~~e-~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 147 LEEELRRAKAKYEESSEDVEARMVAIKESE-ADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999886642 578888999999999999999988776654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol |
| >cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.05 Score=50.73 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=108.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKI-------GIDRSHLRDALKKTGDTYNELGKLFEEQP 224 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~l-------g~d~s~L~~al~~lg~~~~~i~~~~~~Q~ 224 (393)
++.-++.++.++++|-...+.+......+... ...|.....++ |.|..-+..+|...+.++..+++.+..-.
T Consensus 7 ~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A-~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~ 85 (215)
T cd07601 7 FEEDALQLSSYMNQLLQACKRVYDAQNELKSA-TQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLS 85 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777766666655432 23455544444 55433355688888888888776443322
Q ss_pred cccccchhHHHHHHH-hHHhhhhhHHHHHH-------HHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHH
Q psy17920 225 KLDWEPLGDVLHIYK-GIITSMPDILGLHK-------DILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 225 ~~d~~~l~e~L~ey~-~ll~s~~~v~~~~~-------~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E 293 (393)
.+-...+..+|..+. .-|..+++.=.... .++.|.-.+.|-....+. ...++...++.|...+-....-
T Consensus 86 ~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ 165 (215)
T cd07601 86 SQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCA 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222234666666665 34555555433322 333333322221101111 1255666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
++-.+.-|..+|-+.|..|+..|+.|||++.....
T Consensus 166 ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~ 200 (215)
T cd07601 166 LNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFT 200 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999988765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.019 Score=54.60 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH----HHhh-------
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY----EKMT------- 266 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~----erl~------- 266 (393)
.+.+..+|...|.+...||+...++-..--..|.++|..... ..++.+...++. +++.| ++ .|+.
T Consensus 76 ~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKk-Le~~RLd~D~~k~r~~ka~k~~~ 152 (244)
T cd07595 76 DSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILE--VEIPNIQKQKKR-LSKLVLDMDSARSRYNAAHKSSG 152 (244)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhHHHHHHHHHHHhcccccc
Confidence 456999999999999999987666533333457777776653 234444443333 22222 11 1111
Q ss_pred ---hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 267 ---TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 267 ---~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
..+|++ ..++++++.+++.-...+..+|-.|-.. -.|+-.-|..|++.|.+||.+++.......+.|.
T Consensus 153 ~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 153 GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQ 225 (244)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135554 5889999999999999999999988554 4689999999999999999999999999988877
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and |
| >cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.033 Score=53.00 Aligned_cols=182 Identities=15% Similarity=0.224 Sum_probs=112.3
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHH-HHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAV--VADQ---TKKC-QTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~--~~~l---~kk~-~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~ 220 (393)
.+++.++|..+..+..+...+.....- +.+. .++. ...++..+.+.|.+ .+.+..+|...|.+..+|++..
T Consensus 18 ~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~ 97 (246)
T cd07618 18 LQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLTALAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFEL 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555554444333210 1111 1111 12233344444443 3459999999999999999765
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH---H-Hhh------------hhcccc--HHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY---E-KMT------------TENKME--ANRLQEVLK 281 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~---e-rl~------------~e~k~~--~~~ve~~~~ 281 (393)
.++-..-...|.++|+.+.. ..++.+...++. +++.+ ++ + |+. ..+|++ .+++++++.
T Consensus 98 ~~~d~~ie~~fl~PL~~~le--~dlk~I~K~Rkk-Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~ 174 (246)
T cd07618 98 SQHEVLLEKDILDPLNQLAE--VEIPNIQKQRKQ-LAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGN 174 (246)
T ss_pred HhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH-HHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHH
Confidence 44422222357777776654 334454444443 22222 11 1 111 124544 467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 282 RTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 282 ~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
++|..-...-.+|=.| -.+..++-.-|..|++.|.+||.+.+.......+.+.
T Consensus 175 k~E~~kD~~~~dm~~~-l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~ 227 (246)
T cd07618 175 KVEQCKDQLAADMYNF-ASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQ 227 (246)
T ss_pred HHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887777788888 4778899999999999999999999999999888766
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation. |
| >cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.058 Score=51.29 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-H---HH-Hhh-------
Q psy17920 200 SHLRDALKKTGDTY-NELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-E---YE-KMT------- 266 (393)
Q Consensus 200 s~L~~al~~lg~~~-~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e---~e-rl~------- 266 (393)
+.|..+| .+|.++ ..+++...+.-..=...|+++|+.... .-+|+|.+.++. |++.+ + .+ |..
T Consensus 77 S~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKk-L~k~~LD~D~~K~R~~~a~k~s~ 152 (257)
T cd07620 77 SSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE--EDLPEILKNKKQ-FAKLTTDWNSAKSRSPQAAGRSP 152 (257)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHHH-HHhHHhhHHHHHHHHHHhhcccc
Confidence 5588999 777776 777765544322112356677665543 335555554443 33322 1 11 110
Q ss_pred ----------------hhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 267 ----------------TENK--MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 267 ----------------~e~k--~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
..+| +..++++++..+++.--....++|-.|=. +-.++-+-+..|++.|.+||.+.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~-kE~e~a~~l~~lveaQ~~YHrqsl~~Le 231 (257)
T cd07620 153 RSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFAT-KEDSYANYFIRLLELQAEYHKNSLEFLD 231 (257)
T ss_pred CCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245 34589999999999999999999999954 4579999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy17920 329 REYEKMTTE 337 (393)
Q Consensus 329 ~~~~~l~~e 337 (393)
.+.+.|.+.
T Consensus 232 ~~l~~~~~~ 240 (257)
T cd07620 232 KNITELKEN 240 (257)
T ss_pred HHHHHHHHh
Confidence 999888754
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.074 Score=49.89 Aligned_cols=143 Identities=13% Similarity=0.226 Sum_probs=98.7
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH-
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+.. ..++.+.+.++.. +..| ++
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKkL-e~rRLdyD 145 (223)
T cd07614 69 LGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCD--KDLKEIQHHLKKL-EGRRLDFD 145 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHH
Confidence 34444444443 456999999999999999987655533333456667666541 3344444444432 2222 11
Q ss_pred -HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 -EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 -erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++...+++..+..+|+.....+...|.-|-..= .+.-.-|..|++.|++||++++.........|.
T Consensus 146 ~~K~-r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 146 YKKK-RQGKIPDEELRQAMEKFEESKEVAETSMHNLLETD-IEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred HHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 13555568899999999999999999999886553 578889999999999999999999999887776
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated |
| >cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.12 Score=47.94 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
+++++..|..+...++..+..|...+..+..+ +++. .+.|+. +++++.++..++.++..++.|+-.|-.
T Consensus 92 vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~ 171 (211)
T cd07611 92 ALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWS 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998888776544333322 2331 223332 388999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
-|+.=|-..+.+++..|..||..+.........
T Consensus 172 ~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~ 204 (211)
T cd07611 172 RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYE 204 (211)
T ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876555543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit |
| >cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.14 Score=47.21 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=104.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLD 227 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d 227 (393)
+++..++.+...+++|-...+.+......++.. ...|.....++|. +.+.++.+|...++.+..+.+.+..--++-
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a-~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~ 84 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAA-SRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEAT 84 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655554432 2346666666665 233477888888888877765433211111
Q ss_pred ccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhhh--hcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 228 WEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMTT--ENKME-----ANRLQEVLKRTDTVSYALLGEINHFH 298 (393)
Q Consensus 228 ~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~~--e~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF~ 298 (393)
-..+..+|..+.. -|..+++.-....++..++..+ +|... .+|.. ..+++..+.-|...+-..-.-|+-.+
T Consensus 85 ~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq 164 (200)
T cd07639 85 QFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYALQINVIE 164 (200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235555555532 3455555433333322222221 11110 11111 13455556666666666667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 299 ~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..|..||-+.|..|+..|..|||++.......
T Consensus 165 ~kKkfefle~ll~~m~a~~tfF~qG~ell~~l 196 (200)
T cd07639 165 DKKKFDILEFMLQLMEAQASFFQQGHEALSAL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998765543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.17 Score=47.00 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=109.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHHHH-
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------RSHLRDALKKTGDTYNELGKLF- 220 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------~s~L~~al~~lg~~~~~i~~~~- 220 (393)
+.+..++..+..+++|-..-+.+......+... ...|+.....++.+ .-.++.+|+..|+.+..+.+-+
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a-~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLISATKNLSKA-QRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766666665442 33466666666531 1237899999999988887633
Q ss_pred --hcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcc-cc-----HHHHHHHHHHHHHHHH
Q psy17920 221 --EEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENK-ME-----ANRLQEVLKRTDTVSY 288 (393)
Q Consensus 221 --~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k-~~-----~~~ve~~~~~~e~is~ 288 (393)
-+|++ ..+..+|..+.. -|+.+++.-....++-.++..+ +|.. . ..| .. ..++...++.+...+-
T Consensus 85 ~L~~q~~---~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l 161 (207)
T cd07602 85 RMLENAE---EQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASL 161 (207)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 335555555543 3455555433333332222222 2211 1 111 11 1455666667777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 289 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 289 ~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..-.-++-.+..|.-+|-+.|..|+..|+.|||++.......
T Consensus 162 ~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~ 203 (207)
T cd07602 162 EYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 666778889999999999999999999999999998765543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1 |
| >cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.084 Score=49.96 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFY 389 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy 389 (393)
.+..+++.-+.||-.+--|+..|+.+|+.||+.++..||+.||..=
T Consensus 174 ~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~q 219 (234)
T cd07664 174 KVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788899999999999999999999999999999999843
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.19 Score=47.55 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 345 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 345 ~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
++..+++-+.||-.+--|+.+|+.+|+.||+..+..||+.||.-
T Consensus 175 ~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~ 218 (234)
T cd07665 175 VTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHS 218 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00013 Score=62.75 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+..||++||.||+.|..-|..+..+....||+.
T Consensus 102 ~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 102 FSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred hHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 338999999999999999999999999999975
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will |
| >cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.15 Score=47.34 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HhccchhHHHHHHHHHHHHHHHHHHHH---hcCccc
Q psy17920 157 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK---REYQ----KIGIDRSHLRDALKKTGDTYNELGKLF---EEQPKL 226 (393)
Q Consensus 157 d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~---~~~~----~lg~d~s~L~~al~~lg~~~~~i~~~~---~~Q~~~ 226 (393)
..++.|...|-..+..+.....+|+.. ...++ .+|. .+|.+...++.+|+..+.++.++.+-+ -+|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~a~~~ls~a-~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~ 90 (215)
T cd07631 12 AAISNYFNQLFQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLAD 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776665555432 12233 3555 234443348889999999888887643 334332
Q ss_pred cccchhHHHHHHHh-HHhhhhhHHHH-------HHHHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 227 DWEPLGDVLHIYKG-IITSMPDILGL-------HKDILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 227 d~~~l~e~L~ey~~-ll~s~~~v~~~-------~~~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
.+..+|..+.. -|..+++.=.. +..++.|.-.+-|-+.+.+. ...++...+..+..++-.--.-++
T Consensus 91 ---sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn 167 (215)
T cd07631 91 ---AMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALN 167 (215)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544432 34444443222 23333333222111111111 113444456666766666667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILN 326 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~ 326 (393)
..+..|..+|.+.|.+|+..|+.|||++...
T Consensus 168 ~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~ 198 (215)
T cd07631 168 TLQYKKKIALLEPLLGYMQAQISFFKMGSEN 198 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8999999999999999999999999999983
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo |
| >cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.19 Score=46.42 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---hcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcccc
Q psy17920 200 SHLRDALKKTGDTYNELGKLF---EEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENKME 272 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~---~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k~~ 272 (393)
+.++++|...|+++..+.... -+|++ ..+.++|..++. -|..+++.=....++..++..+ .|.. . ..+.+
T Consensus 57 ~~i~~~L~kF~~~l~ei~~~~~~l~~q~e---~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~ 133 (200)
T cd07637 57 EMISECLDKFGDSLQEMVNYHMILFDQAQ---RSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPH 133 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Confidence 348889999999888877533 33333 335566665533 3455554433322222222211 1110 0 11111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 273 -----ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 273 -----~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..++..+++.+...+-..-..++-.+..|..+|-+.|..|+..|..|||++...-...
T Consensus 134 ~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~ 196 (200)
T cd07637 134 EVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHEL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 2567777777888887777889999999999999999999999999999998765543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=48.89 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HHH----Hhh---hhc-
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EYE----KMT---TEN- 269 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~e----rl~---~e~- 269 (393)
.+.+..||...|++..+||+....+...--..|.++|..+.. ..++.+.+.++. |+..| ++. |+. .+.
T Consensus 88 ~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~--~dik~i~k~RKk-Le~rRLd~D~~k~r~~kAk~~~~ 164 (229)
T cd07594 88 GTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE--GDMKTISKERKL-LENKRLDLDACKTRVKKAKSAEA 164 (229)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCccc
Confidence 356999999999999999987655533333457777776654 234444444433 22222 111 111 111
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 270 -KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 270 -k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.....+++.++.+|+.-.+.+..=|.-+-..- .+.-.-|.+|++.|+.||.+++.....+...
T Consensus 165 ~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~-~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 165 IEQAEQDLRVAQSEFDRQAEITKLLLEGISSTH-ANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQ 228 (229)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12348889999999998887777676665532 4677789999999999999999887766543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. |
| >cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.24 Score=46.26 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhH-Hhhhh-hHHHHHHHHHHHH
Q psy17920 187 LYKREYQKIGID-----RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGI-ITSMP-DILGLHKDILNKK 259 (393)
Q Consensus 187 ~~~~~~~~lg~d-----~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~l-l~s~~-~v~~~~~~al~k~ 259 (393)
.|+....++|.. ...++.+|...+.+...++.......++-...+..+|..+..- |..++ +.=.....+...+
T Consensus 41 ~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~y 120 (215)
T cd07604 41 QFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDY 120 (215)
T ss_pred HHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466667777772 2248899999999999888765443333333455555555443 44443 3221111111111
Q ss_pred ---H-HHHHhhh-hcc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy17920 260 ---R-EYEKMTT-ENK------------MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 322 (393)
Q Consensus 260 ---r-e~erl~~-e~k------------~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk 322 (393)
. ..++.+. +++ ....+++..++.|...+-...--++-.+.-|..+|-..|..|...|..|||+
T Consensus 121 e~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~ 200 (215)
T cd07604 121 ETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQD 200 (215)
T ss_pred HHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111110 111 1135566666666666655556677788899999999999999999999999
Q ss_pred HHHhHHHHHHh
Q psy17920 323 DILNKKREYEK 333 (393)
Q Consensus 323 ~a~~~~~~~~~ 333 (393)
+...-...-+-
T Consensus 201 G~~ll~~l~p~ 211 (215)
T cd07604 201 GLKVIEHFRPY 211 (215)
T ss_pred HHHHHHHHHhh
Confidence 99887766544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate |
| >cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.23 Score=45.67 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=76.0
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAA 308 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~ 308 (393)
..+..++..+..++..++.++..|...+-.+...+.....+.-...+++.++..++.++..++.|+-+|..-+..=+...
T Consensus 88 ~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~ 167 (195)
T cd07589 88 KLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKERGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETC 167 (195)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45888999999999988888888776543333221111112234588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy17920 309 MKSFLTEQINFYQKDIL 325 (393)
Q Consensus 309 l~~yl~~qi~~~qk~a~ 325 (393)
+.+|+..|..+|.....
T Consensus 168 ~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 168 LKSFVELQRDLYDTLLK 184 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease. |
| >cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.25 Score=45.63 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=96.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccchhHHHHHHHHHHHHHHHHHHH---HhcCccc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR---EYQKIGIDRSHLRDALKKTGDTYNELGKL---FEEQPKL 226 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~---~~~~lg~d~s~L~~al~~lg~~~~~i~~~---~~~Q~~~ 226 (393)
+.-++.++..+.+|-...+.+......++.. ...|.. +|...+.+..-++.+|+..++++..+.+. +-+|++
T Consensus 8 E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a-~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~- 85 (200)
T cd07638 8 EGDVAELELKLDKLVKLCIGMIDAGKAFCQA-NKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQ- 85 (200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344445555555544444444444333321 123444 33333333334777888888888777753 333433
Q ss_pred cccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHH-HHHhhh--hcccc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 227 DWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKRE-YEKMTT--ENKME-----ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 227 d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re-~erl~~--e~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+..+|..+.. -|..+++.-....++-.++-. +.|... ..|.. ..++...+..+...+-..-.-|+-.
T Consensus 86 --~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~v 163 (200)
T cd07638 86 --RSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIALDYVLQINVL 163 (200)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555555532 334444432222222111111 122110 11111 1355666677777776677778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
+..|..+|-+.|..|+..|+.|||++.......
T Consensus 164 q~kKkfe~le~ll~~m~a~~tff~qG~el~~d~ 196 (200)
T cd07638 164 QSKRRSEILKSMLSFMYAHLTFFHQGYDLFSEL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 999999999999999999999999998765543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.27 Score=45.67 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=81.4
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
++++|..|......++..+..|...+-.+.. ++++. .+.|+. +++++.++..++.++..++.|+-.+-.
T Consensus 92 vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~ 171 (211)
T cd07612 92 ALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYD 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999998888888776554433321 22332 123333 388999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
-|+.=|--.+.+++..|..||..+.........-|
T Consensus 172 ~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~ 206 (211)
T cd07612 172 SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVM 206 (211)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988665554433
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 ( |
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.21 Score=44.12 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=47.7
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+++..++.+-+..+.-+..+|+.|+..+..+|...|..|+..|+.||+.+
T Consensus 134 ~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~ 184 (194)
T cd07307 134 EEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEV 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Confidence 567888999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.3 Score=46.04 Aligned_cols=69 Identities=9% Similarity=0.237 Sum_probs=53.9
Q ss_pred HHHhHHHHHHhhhhhccCCHHH--------------HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 323 DILNKKREYEKMTTENKMEANR--------------LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~--------------~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
.+..|.....+|...|++.+.. .+..+.+.+.||..+.-|+..|+.++..||+..++.|+..||.+
T Consensus 137 ~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~ 216 (230)
T cd07625 137 NTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEY 216 (230)
T ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555554422 23356788899999999999999999999999999999999998
Q ss_pred hhh
Q psy17920 389 YQK 391 (393)
Q Consensus 389 y~~ 391 (393)
-++
T Consensus 217 erk 219 (230)
T cd07625 217 ERK 219 (230)
T ss_pred HHH
Confidence 755
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.071 Score=49.83 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQE 278 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~ 278 (393)
.+.+..||...|.+..+|++.-..+-..--..|.++|..+.. +.++.+.+.++..-.+.=++.-.+...+-...++..
T Consensus 88 ~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~--~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~ 165 (220)
T cd07617 88 GTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLE--GDWKTISKERRLLQNRRLDLDACKARLKKAEHELRV 165 (220)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456999999999999999986544322222346666665542 134444444443221111111000001112478889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 279 VLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 279 ~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
++..|+.-.+....=|.-+...- .+--.-|.+|++.|.+||.+++........
T Consensus 166 A~~kf~~~~E~a~~~M~~il~~~-~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 166 AQTEFDRQAEVTRLLLEGISSTH-VNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887776655555554432 245567889999999999999987766543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified |
| >cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.34 Score=45.56 Aligned_cols=107 Identities=11% Similarity=0.213 Sum_probs=82.2
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhhh-----hcccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMTT-----ENKME--ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~~-----e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+.+++.+|..++..++..+..|...+-.+.. ++++.. +.|+. +++++.++..++.++..++.|+-+|
T Consensus 95 ~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l 174 (224)
T cd07591 95 QTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQL 174 (224)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 357889999999999999999887765433322 223311 12222 3788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
-.-|..=|-..+.++...|..|+-............+.
T Consensus 175 ~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 175 VDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999888776655554444
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an |
| >cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.24 Score=47.22 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=103.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAV--VADQTKKC----QTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~--~~~l~kk~----~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~ 220 (393)
.+++.++|..+..+..+...+.....- +.+.-++. ...++..+.+.|.+ .+.|..+|...|.+..+||+..
T Consensus 18 ~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s~lg~aL~~~gea~~kla~a~ 97 (248)
T cd07619 18 LQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLGDDSLLGKMLKLCGETEDKLAQEL 97 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555444444333221 12211111 11233344444443 3569999999999999999866
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH---H-Hhhhh------------cccc----HHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY---E-KMTTE------------NKME----ANRLQEV 279 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~---e-rl~~e------------~k~~----~~~ve~~ 279 (393)
..+-..--..|.++|+.+.. ..++.+.+.++. +++.| ++ + |+... ++.. ..+++++
T Consensus 98 ~~~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~-Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~a 174 (248)
T cd07619 98 ILFELQIERDVVEPLYVLAE--VEIPNIQKQRKH-LAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEA 174 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH-HHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHH
Confidence 55433333457777776654 234444444333 22222 11 1 22111 1221 1566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
...++..-...-.+|=.|-. +..|+-+-|..|++.|++||.+.+.......+.+.
T Consensus 175 e~~~e~~kd~~~~~m~~~l~-~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~ 229 (248)
T cd07619 175 ANRMEICRDQLSADMYSFVA-KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIK 229 (248)
T ss_pred HHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666554445556666633 45677888999999999999999999998887765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.12 Score=48.77 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH----Hhh---hhc-c
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE----KMT---TEN-K 270 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e----rl~---~e~-k 270 (393)
.|.+..||...|.+..+||+........--..|.++|..+.. +.++.+.+.++..-.+.=++. |+. .+. +
T Consensus 88 ~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le--~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~ 165 (229)
T cd07616 88 GTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIE--GDYKTITKERKLLQNKRLDLDAAKTRLKKAKVAEAR 165 (229)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 456999999999999999986553222111256667766653 244555444443211111111 111 111 1
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 271 -MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 271 -~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
....++..++.+|+...+.+..=|..+.. ...++-.-|.+|++.|.+||.+++........
T Consensus 166 ~~~e~elr~ae~efees~E~a~~~m~~i~~-~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~ 227 (229)
T cd07616 166 AAAEQELRITQSEFDRQAEITRLLLEGISS-THAHHLRCLNDFVEAQMTYYAQCYQYMLDLQK 227 (229)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12477778999999888877766666652 24578889999999999999999987766543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact |
| >cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.39 Score=44.42 Aligned_cols=172 Identities=10% Similarity=0.127 Sum_probs=96.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHH----HHHHHHHHHHHHHHHHH---hcC
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID--RSHLR----DALKKTGDTYNELGKLF---EEQ 223 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d--~s~L~----~al~~lg~~~~~i~~~~---~~Q 223 (393)
+.-++.++..+.+|-...+.+......+.. ....|+....++|.. ...+. .+|...+.++..++..+ -+|
T Consensus 7 E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~-a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q 85 (202)
T cd07606 7 EGSADELRDRSLKLYKGCRKYRDALGEAYD-GDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQ 85 (202)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444443333322 122455556666552 11122 46888888888876533 334
Q ss_pred ccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh---hhcccc-----HHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT---TENKME-----ANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~---~e~k~~-----~~~ve~~~~~~e~is~~v~~E 293 (393)
.+. .+..+|..++. -|..+++.=....++...+..+ .|.. ...|.. ..++...+..+...+-..-.-
T Consensus 86 ~~~---~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~~ 162 (202)
T cd07606 86 VEH---MLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMNR 162 (202)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 35556666543 3444444322222222222221 1111 011111 255666677777777666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
++..+.-|..+|-+.|..|+..|+.|||++.....
T Consensus 163 ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~ 197 (202)
T cd07606 163 LHAADARKRVEFLERLSGSMDAHLAFFKSGYELLR 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999987644
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.28 Score=46.76 Aligned_cols=220 Identities=12% Similarity=0.135 Sum_probs=114.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccccchh
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLG 232 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~ 232 (393)
+.....+........+.|..+..+..++.. ....+.+--...+.|...+..+|..+|..-..+.... ....++..+-
T Consensus 14 ~~~p~~~~~~~~~~r~~I~~l~~~~~~l~~-l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~--~~~~~~~~l~ 90 (246)
T cd07597 14 VLLPPDFQEQWANSRERIRRLLESWTKLRV-LAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWA--GDSDTWGDIN 90 (246)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc--CCCccHHHHH
Confidence 334456666677778888888887777643 3344555555555555556666666665432211100 0111222222
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 233 DVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSF 312 (393)
Q Consensus 233 e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~y 312 (393)
+.|..-.+......+....+..+.. ..-++.++. +-.+...++.=++|.++--..+.-...+.+
T Consensus 91 ~~l~~~s~~~~~~s~~~~~~a~~~~---------------~~vlE~Lk~-~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri 154 (246)
T cd07597 91 EGLSSLSKHFQLLSDLSEDEARAEE---------------DGVLEKLKL-QLDLLVSLRDLFERHEKLSLNNIQRLLKRI 154 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------hhhhHHHHH-HHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 2322222222222222211111000 001111111 222222333333333333333333333333
Q ss_pred HHHHHHHhHHHH--HhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17920 313 LTEQINFYQKDI--LNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQ 390 (393)
Q Consensus 313 l~~qi~~~qk~a--~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~ 390 (393)
-....+...-.+ ..|-...+++...-.-....+.....|...+-+++..|+..||...- .....++.|...|+.||.
T Consensus 155 ~~~~~kl~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~ 233 (246)
T cd07597 155 ELNKKKLESLRAKPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHS 233 (246)
T ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333332222112 35666777777666555555666666899999999999999999998 999999999999999998
Q ss_pred hc
Q psy17920 391 KS 392 (393)
Q Consensus 391 ~~ 392 (393)
.+
T Consensus 234 ~l 235 (246)
T cd07597 234 EL 235 (246)
T ss_pred HH
Confidence 64
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.44 Score=44.22 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=106.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-----hhHHHHHHHHHHHHHHHHHH---H
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI----D-----RSHLRDALKKTGDTYNELGK---L 219 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~----d-----~s~L~~al~~lg~~~~~i~~---~ 219 (393)
.+..+|...++++.|-..-+.+......+... ...|+....+++. + .-.+..+|...++++.++.+ +
T Consensus 7 ~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a-~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~ 85 (207)
T cd07636 7 HEAELDKTNKFIKELIKDGKSLIAALKNLSSA-KRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777766665443 2346666666663 1 11277888888888888775 3
Q ss_pred HhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h--hcccc-----HHHHHHHHHHHHHHHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T--ENKME-----ANRLQEVLKRTDTVSYA 289 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~--e~k~~-----~~~ve~~~~~~e~is~~ 289 (393)
+-+|++. .+..+|..+.. -|+.+++.-....+.-+++..+ +|.. + .+|.. ...++..++-|..++-.
T Consensus 86 L~~qa~~---~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLd 162 (207)
T cd07636 86 MIENASE---VLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLE 162 (207)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344432 34555555533 3455555433333322222222 2221 1 12222 13444445566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 290 LLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 290 v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
.---|+..+..|..+|.+.|.+|+..+..|||++-.....
T Consensus 163 YV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d 202 (207)
T cd07636 163 YVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKD 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 6667888999999999999999999999999999876544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o |
| >cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.41 Score=44.52 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=74.9
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHH-hhhhc--------ccc--HHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEK-MTTEN--------KME--ANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~er-l~~e~--------k~~--~~~ve~~~~~~e~is~~v~~E 293 (393)
..+..++.+|..++..++..+..|...+-.+.. +++ +...+ ++. +.+++.++..++.++..++.|
T Consensus 96 ~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~e 175 (216)
T cd07599 96 ERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSE 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999988887765433322 223 21111 111 378899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
+-.|-.-+..=+..++..|...|..+|..+-.
T Consensus 176 LP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~ 207 (216)
T cd07599 176 LPKLLALADEFLPPLFKSFYYIQLNIYYTLHE 207 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999887654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo |
| >cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=48.90 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH----Hh---hhhccc
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE----KM---TTENKM 271 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e----rl---~~e~k~ 271 (393)
.+.|+.||...|.++.+||+.-.+|-..=...|.++|..+.. ..++.+...|+..-.+.=+.. ++ ....+-
T Consensus 102 ~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~--~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~ 179 (242)
T cd07600 102 EDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLN--TSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQ 179 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 567999999999999999986555422222345555554432 134444433333211111111 11 111111
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 272 --EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 272 --~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
...+++.++.+|+.....+..-|..+-.. .++-+.|..|++.|..||++++.......
T Consensus 180 ~~~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~ 239 (242)
T cd07600 180 EAARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELL 239 (242)
T ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13778889999998888888888888444 68999999999999999999998776654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.64 Score=43.00 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy17920 157 ESCSRFIHGLDSAVKSLVAVVADQTKK--CQTLYKREYQK----IGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEP 230 (393)
Q Consensus 157 d~f~~~l~~L~~~l~~L~~~~~~l~kk--~~~~~~~~~~~----lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~ 230 (393)
.....|++.|-.++..+...-+++.-. .......+|.+ ||.+...++.+|...++.+..+.+.+..-..+--..
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~s 91 (215)
T cd07632 12 GTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADT 91 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776666544444321 11122334543 444444588899999988888876443322222123
Q ss_pred hhHHHHHHHh-HHhhhhhHHHH-------HHHHHHHHHHHHHhhhhccccH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKG-IITSMPDILGL-------HKDILNKKREYEKMTTENKMEA-------NRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 231 l~e~L~ey~~-ll~s~~~v~~~-------~~~al~k~re~erl~~e~k~~~-------~~ve~~~~~~e~is~~v~~E~~ 295 (393)
+..+|..++. -|..+++.-.. +..++.|.-.+-| .|..+ .++...++.+-.++-.--.-|+
T Consensus 92 l~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Knaqlsk----kK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN 167 (215)
T cd07632 92 MVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPK----KRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALN 167 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 23334333222 3334444332211 12111 1244444445554444445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
-.+..|.-+|-+.|..|+..|+.|||++..--.+-.+.
T Consensus 168 ~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~ 205 (215)
T cd07632 168 ALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDS 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998876655443
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac |
| >cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.98 Score=41.92 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=98.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chh-HHHHHHHHHHHHHHHHHHHHh--
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI--------DRS-HLRDALKKTGDTYNELGKLFE-- 221 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~--------d~s-~L~~al~~lg~~~~~i~~~~~-- 221 (393)
+..+|.-.++++.|-..-+.+......+... ...|+....+++. |.. -++..|+..+.....+.+-..
T Consensus 8 e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a-~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L 86 (207)
T cd07635 8 EAELERTNRFIKELLKDGKNLIAATKSLSAA-QRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIM 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777766666666655555432 2345555666553 111 155777777777777665332
Q ss_pred -cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HH---hhhhcccc-----HHHHHHHHHHHHHHHHHH
Q psy17920 222 -EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EK---MTTENKME-----ANRLQEVLKRTDTVSYAL 290 (393)
Q Consensus 222 -~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-er---l~~e~k~~-----~~~ve~~~~~~e~is~~v 290 (393)
.|++ ..+..+|..+.. -|+.+++.-......-+++..+ +| ++...+-. ...+...++.+...+-..
T Consensus 87 ~~~~~---~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdY 163 (207)
T cd07635 87 ALNVT---ETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEY 163 (207)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322 224445544432 2344444322222222222211 22 11111111 134444566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 291 LGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 291 ~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
-.-|+..+..|..+|.+.|..|+..|+.|||++.......
T Consensus 164 v~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~ 203 (207)
T cd07635 164 VCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 6678889999999999999999999999999998765543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote |
| >cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like | Back alignment and domain information |
|---|
Probab=96.20 E-value=1 Score=41.71 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=103.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hh--HHHHHHHHHHHHHHHHHHHH---h
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID-------RS--HLRDALKKTGDTYNELGKLF---E 221 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d-------~s--~L~~al~~lg~~~~~i~~~~---~ 221 (393)
...+.-+++++.|-...+.+......+... ...|+....+++.. .+ .++.++...+..+..+.+.. -
T Consensus 9 ~~l~~t~~~ik~liK~c~~li~A~k~~~~a-~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~ 87 (207)
T cd07634 9 IELERTNKFIKELIKDGSLLIGALRNLSMA-VQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLI 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776666666665443 33466666666641 11 37788888888877776533 2
Q ss_pred cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcc-cc-----HHHHHHHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENK-ME-----ANRLQEVLKRTDTVSYALL 291 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k-~~-----~~~ve~~~~~~e~is~~v~ 291 (393)
+|++ ..+..+|..+.. -|..+++.-....++..++..+ +|.. . ..+ .. ..+++..++-|...+-...
T Consensus 88 ~~~~---~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv 164 (207)
T cd07634 88 QNAN---DVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEYV 164 (207)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 234455555432 3445554433333332222221 2211 0 111 11 2455555666777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 292 GEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 292 ~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
--|+-.+..|..||-+.|..|+..|..|||++...-..
T Consensus 165 ~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~d 202 (207)
T cd07634 165 FKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQE 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 67888999999999999999999999999999876544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain |
| >cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.4 Score=40.74 Aligned_cols=172 Identities=13% Similarity=0.161 Sum_probs=94.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHH---HHh
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------RSHLRDALKKTGDTYNELGK---LFE 221 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------~s~L~~al~~lg~~~~~i~~---~~~ 221 (393)
..++....+++.|-..-+.|...+..++.. ...|+....+++.+ +-.++++|...|+.+..+-+ ++-
T Consensus 9 ~ele~~~~~IkkliK~~~~li~a~K~~s~A-~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~ 87 (207)
T cd07633 9 QELERTNKFIKDVIKDGNALISAIKEYSSA-VQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMV 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555432 23455555555542 11288888888888877765 333
Q ss_pred cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHh-hhhccccHHHHHHH-------HHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKM-TTENKMEANRLQEV-------LKRTDTVSYALL 291 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl-~~e~k~~~~~ve~~-------~~~~e~is~~v~ 291 (393)
+|++. .+..+|..++. -|+.+++.-....+.-+++-.+ +|. ....|--..+++++ ++-|-.++=.--
T Consensus 88 d~aq~---s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV 164 (207)
T cd07633 88 QNASD---LLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFYESSLEYV 164 (207)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 24445544432 2344444322222211111111 221 12122222344444 333433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 292 GEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 292 ~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
--|+-.+..|.-||-+.|.+|+..+.-|||++..-...
T Consensus 165 ~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~d 202 (207)
T cd07633 165 YQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQD 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34677889999999999999999999999999875543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.4 Score=40.61 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=38.9
Q ss_pred HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 345 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 345 ~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
.+....+-+.||-.+--|+..|+.+||.||+..+-.|++.||+
T Consensus 141 ~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~ 183 (198)
T cd07630 141 KKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIK 183 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999999999999999885
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG1118|consensus | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.73 Score=44.83 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=84.3
Q ss_pred HHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH-
Q psy17920 188 YKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE- 263 (393)
Q Consensus 188 ~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e- 263 (393)
++..+.++|. +.+++..+|..+|.++..+|++-..-..+--..|.++|..|. +.-++++-+.+++.-.+.-..+
T Consensus 88 Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~--~~elK~i~hh~KKLEgRRldyD~ 165 (366)
T KOG1118|consen 88 LGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQ--LKELKDIQHHRKKLEGRRLDYDY 165 (366)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--HHHHHHHHHHHHHhhhhhhHHHH
Confidence 4445555555 245588899999999999887533221111134666666552 3345555444433222211211
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 264 KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 264 rl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+....||+..+++-.+..++|.-.+.+..-|=.+...- .|=-+-|..+++.|+.||++.+.-....-.++-
T Consensus 166 kkkk~~K~~dEelrqA~eKfEESkE~aE~sM~nlle~d-~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~ 236 (366)
T KOG1118|consen 166 KKKKQGKIKDEELRQALEKFEESKELAEDSMFNLLEND-VEQVSQLSALIQAQLDFHRQSTQILQELQMKLF 236 (366)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11236788888888888888776655444333332222 233345678999999999999887766655443
|
|
| >KOG3771|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=4 Score=41.99 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHH----------HHHHHHHHHhhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDI----------LNKKREYEKMTTENKME--ANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~a----------l~k~re~erl~~e~k~~--~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
..+..+|..|.+....++..+..|... +++++..++ ..+-|+. +.+++.+++.||..+..++.|+-.
T Consensus 108 d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~-kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~ 186 (460)
T KOG3771|consen 108 DQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKK-KDEAKLAKAEEELEKAQQVFEELNNELLEELPA 186 (460)
T ss_pred HhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcC-CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999888887776654333 223322211 1112222 388999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH---HHHHhhhhh
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKK---REYEKMTTE 337 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~---~~~~~l~~e 337 (393)
+-..|+.-|...++.+...|.-||..++.--. ....+|.+.
T Consensus 187 L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 187 LYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999944443 444444433
|
|
| >PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.2 Score=39.17 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=99.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
+++..++.|. .+.....+|.+++..+.... ...++.-|..+|. | .+.|+.++...|++...++.-
T Consensus 34 eL~~kle~l~----~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~--- 106 (229)
T PF06456_consen 34 ELDAKLELLR----DTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQ--- 106 (229)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3455555544 34444444444444443321 1235555666666 3 334889999999988887742
Q ss_pred CccccccchhHHHHHHHhHH-----hhhhhHHHHHH----------HHHHHHHHHHHh-hh-----hccc--cHHHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGII-----TSMPDILGLHK----------DILNKKREYEKM-TT-----ENKM--EANRLQEV 279 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll-----~s~~~v~~~~~----------~al~k~re~erl-~~-----e~k~--~~~~ve~~ 279 (393)
-..+..+|+-+..-+ .+++|+...-+ +++.+++++..- .. ..+. .+..+...
T Consensus 107 -----~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~ 181 (229)
T PF06456_consen 107 -----GETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEA 181 (229)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHH
Confidence 233444444443333 23455443322 234445444311 00 0111 12667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILN 326 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~ 326 (393)
+.+|+.+...+..=|+-.+..|+.+|..-|..|......||.+++..
T Consensus 182 k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 182 KERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999988754
|
The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D. |
| >cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.011 Score=49.98 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=47.0
Q ss_pred ccccccchhhhhccccc---------eEecCCCCcccccCCccccccCC--ChHHHHHHHHHHHHHHHHHhcCC-Ccccc
Q psy17920 37 CSRFIHGLDSAVKSLVA---------VVADQTKKCQTLYKREYQKIGRY--EEQFIEHRKNQLQSFVDYVCRHP-VLCRS 104 (393)
Q Consensus 37 ~s~f~~~~~~~~~~~~~---------~v~rry~df~~l~~P~K~~~g~~--~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~ 104 (393)
|++|..+...+...||. +++|.+|+..|+ |+. .-+--+.|+..|+.|++.+.+-| .++.|
T Consensus 40 y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~--------~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~ 111 (121)
T cd06889 40 LEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL--------GSLKGSTSRSLARLKLLETYCQELLRLDEKVSRS 111 (121)
T ss_pred HHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc--------CCcccccchHHHHHHHHHHHHHHHHcCCcceecC
Confidence 45666666666665552 456666655555 442 22335799999999999888777 88899
Q ss_pred cccccccc
Q psy17920 105 PVWQHFIT 112 (393)
Q Consensus 105 ~~~~~FL~ 112 (393)
+.+..|..
T Consensus 112 ~~V~~FF~ 119 (121)
T cd06889 112 PEVIQFFA 119 (121)
T ss_pred HHHHHhcC
Confidence 99888874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain |
| >KOG2273|consensus | Back alignment and domain information |
|---|
Probab=94.70 E-value=6.7 Score=41.22 Aligned_cols=43 Identities=12% Similarity=0.353 Sum_probs=38.0
Q ss_pred hccC--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 350 KRTD--TVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 350 ~r~~--~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
++.+ .++-.+.+|+.+|...|..||+.++..|+..++.+++.+
T Consensus 443 ~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~ 487 (503)
T KOG2273|consen 443 KELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQI 487 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 677788899999999999999999999999999999864
|
|
| >cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.4 Score=37.96 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
....++-+.||-.+--|+..|+.+||.||+..+-.|++.+|+-
T Consensus 160 ~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ 202 (218)
T cd07663 160 QECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKH 202 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377888999999999999999999999999999999998864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It |
| >PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.1 Score=41.79 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHH-hhhhhHHHHHHHHHHHHHH--HHHhhhhc--ccc-
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGII-TSMPDILGLHKDILNKKRE--YEKMTTEN--KME- 272 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll-~s~~~v~~~~~~al~k~re--~erl~~e~--k~~- 272 (393)
.+.|+.+|...+.++.+|++..-+| |-....+.++.....+ ..+..+...|++.-.+.=+ +-|....+ +..
T Consensus 147 ~~~L~~aL~~~S~~~~~I~~aRL~q---D~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pek 223 (289)
T PF10455_consen 147 EDPLSKALLKYSSAYEKIAQARLEQ---DQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEK 223 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 4569999999999999999865555 2222222222222111 2233332333322111111 11222222 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 273 ----ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 273 ----~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
..+++.++++|-..+.....+|..+=.. .++-..|+.++..|..||++++.........|
T Consensus 224 ee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~--~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 224 EEQLRVELEQAEDEFVSATEEAVEVMKEVLDN--SEPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1568999999998888899999887554 46779999999999999999999887776544
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO []. |
| >cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.065 Score=43.54 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=56.4
Q ss_pred CceEEEe--eCCcccc--ccccccccchhhhhccccceEecCCCCcccccCCccccccCCChHHHHHHHHHHHHHHHHHh
Q psy17920 21 HILSISH--FNLEQET--ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVC 96 (393)
Q Consensus 21 ~~~~i~v--~~p~k~~--~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~ 96 (393)
..|-|+| +|++..- ..+.+|..+++.+-..+|..++|.||+. ...|+.+. =++|.+.|+.|+..+.
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~--------~~~~~~~~--~~~R~~~L~~Yl~~Ll 82 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHW--------WHLPFTDS--DHKRVRDLNHYLEQLL 82 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCc--------cccCcccH--HHHHHHHHHHHHHHHH
Confidence 3455555 3432222 2456777788888888898888888765 33454444 3789999999999877
Q ss_pred cCC-Ccccccccccccc
Q psy17920 97 RHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 97 ~HP-vL~~~~~~~~FL~ 112 (393)
.-| -++.|+.+..|..
T Consensus 83 ~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 83 SGSREVANSDCVLSFFL 99 (101)
T ss_pred ccCHHHhcchHHHHHhh
Confidence 666 7888888777764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=93.86 E-value=5.7 Score=37.14 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=37.5
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
+...++-+-||-.+--|+..|+.+||.||+..+-.|++.+|.
T Consensus 160 ~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lk 201 (218)
T cd07662 160 QLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK 201 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999999998875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays |
| >KOG3784|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.072 Score=53.28 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=49.5
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
-+.+||+.+.-|++ |+|... .+++.=++.||++|+.|++.+++||+|..+..++.||...
T Consensus 29 ~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f-~L~~~~~~~rr~~leqylqa~~q~~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 29 HGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF-KLTPQQLDSRRRGLEQYLQAVCQDPVLARSELVQKFLMRA 102 (407)
T ss_pred EEEEehHHHHhHHHHHHHHhhcccCCCCCccccc-CCChhhhHHHHHHHHHHHHHHhcCccccchhhhhHHHHhc
Confidence 36666776666665 566544 4688899999999999999999999999999999999865
|
|
| >cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin | Back alignment and domain information |
|---|
Probab=92.41 E-value=9 Score=35.41 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHh-----hhhhHHHHHHHHHHH---
Q psy17920 187 LYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIIT-----SMPDILGLHKDILNK--- 258 (393)
Q Consensus 187 ~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~~al~k--- 258 (393)
.++..|..+|.-.++|++++...|++...++.-- +.+...|+-+..-++ +++|++..-+....-
T Consensus 41 ~Lg~~f~~l~~k~p~l~~af~~~aet~k~l~kng--------~~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~E 112 (201)
T cd07660 41 ALGDAFADLSQKSPELQEEFTYNAETQKLLCKNG--------ETLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIE 112 (201)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHh
Confidence 3455555555545568888888888877766321 134444444433332 345554443322111
Q ss_pred ----HHHHHHhhhhccc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 259 ----KREYEKMTTENKM---------EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 259 ----~re~erl~~e~k~---------~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
..+.+.+...+.. .+..+...+.+|+.+-+.|..-|+-++..|+.+|..-|.-|......||..+..
T Consensus 113 Ydayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~ 192 (201)
T cd07660 113 YDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQK 192 (201)
T ss_pred HHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1122322222221 125677778889999999999999999999999999999999999999988877
Q ss_pred hHHHHH
Q psy17920 326 NKKREY 331 (393)
Q Consensus 326 ~~~~~~ 331 (393)
......
T Consensus 193 ~L~~~~ 198 (201)
T cd07660 193 QLEQTL 198 (201)
T ss_pred HHHHHH
Confidence 765543
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im |
| >cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=92.04 E-value=11 Score=35.43 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
+...++-+.||-.+-.|+..|+.+||.||+..+-.|++.||+
T Consensus 161 ~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik 202 (219)
T cd07621 161 QEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIK 202 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788889999999999999999999999999999999886
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain |
| >cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=91.33 E-value=12 Score=34.64 Aligned_cols=135 Identities=10% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHh-----hhhhHHHHHH--------
Q psy17920 188 YKREYQKIGIDRSHL-RDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIIT-----SMPDILGLHK-------- 253 (393)
Q Consensus 188 ~~~~~~~lg~d~s~L-~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~-------- 253 (393)
++.-+..+|.-.+.+ ++++...|++...++.- . +.+..+|+-+..-+. +++|....-+
T Consensus 42 lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~----g----~~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~E 113 (203)
T cd00011 42 LGDAFADLSQKDPELAGEEFGYNAEAQKLLCKN----G----ETLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLE 113 (203)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh----H----HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHh
Confidence 444455555534445 57888888888777631 1 223334444333332 3455544332
Q ss_pred --HHHHHHHHHHHhhh---h-c----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 254 --DILNKKREYEKMTT---E-N----KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 254 --~al~k~re~erl~~---e-~----k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
+++.+++++..-.. + | +..+..+...+.+|+.+...+..-|+-....|+.+|...|..|......||.+.
T Consensus 114 Y~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~ 193 (203)
T cd00011 114 YDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGN 193 (203)
T ss_pred HHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444444411000 0 0 012367888899999999999999999999999999999999999999999988
Q ss_pred HHhHHHH
Q psy17920 324 ILNKKRE 330 (393)
Q Consensus 324 a~~~~~~ 330 (393)
+......
T Consensus 194 ~~~l~~~ 200 (203)
T cd00011 194 QKVLEQT 200 (203)
T ss_pred HHHHHHH
Confidence 8776544
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is |
| >cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=91.19 E-value=13 Score=34.70 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHhc---Cccccc-cc
Q psy17920 160 SRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----DRSHLRDALKKTGDTYNELGKLFEE---QPKLDW-EP 230 (393)
Q Consensus 160 ~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----d~s~L~~al~~lg~~~~~i~~~~~~---Q~~~d~-~~ 230 (393)
..-+.+|-..++.+.......+.. ...|.....+||. +...++.+|..+|.....+..++.. +.++.. .|
T Consensus 15 ~~~l~~~kk~~k~~~~sG~~yv~~-~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~p 93 (215)
T cd07642 15 RTVLYKMKKSVKAIHTSGLAHVEN-EEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFP 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556666666666655554432 3356777777887 3445889999999888887765433 222221 23
Q ss_pred hhHHHHHHHhHH-hhhhhHHHH----HHHHHHHHHHHHH--hhhhccc----c-H---HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGII-TSMPDILGL----HKDILNKKREYEK--MTTENKM----E-A---NRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 231 l~e~L~ey~~ll-~s~~~v~~~----~~~al~k~re~er--l~~e~k~----~-~---~~ve~~~~~~e~is~~v~~E~~ 295 (393)
+...|++-++-+ +-++..|.. ...++.|.....+ .+..|-+ + . +++...+..+....-.-.-=++
T Consensus 94 l~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in 173 (215)
T cd07642 94 LDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVN 173 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222 122222221 2223322222111 1111111 0 1 1222222222222111111355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
-.+.-|..|+-..+..|...|..|+|++.......-+.+.
T Consensus 174 ~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~ 213 (215)
T cd07642 174 EIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIE 213 (215)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777888999999999999999999999988877766543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i |
| >PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=89.76 E-value=15 Score=33.19 Aligned_cols=51 Identities=16% Similarity=0.403 Sum_probs=45.8
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++..+..-+.+.--+..||..|...+..-|...+..|+..|..||+++
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~ 217 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQL 217 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888889999999999999999888899999999999999874
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A .... |
| >cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=88.70 E-value=21 Score=33.39 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
+++...++--.-.++=...-+|-.+.-+-.+|...|-.|...|..||++
T Consensus 152 ~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~ 200 (215)
T cd07604 152 EEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQD 200 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444544555677788889999999999999999999975
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate |
| >cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.43 Score=40.65 Aligned_cols=35 Identities=6% Similarity=0.187 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+=+..|++.||.|||++..-|+-+..+....||+.
T Consensus 95 ~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 95 RRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred hhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 34677999999999999999999999988889875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor |
| >cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.57 Score=40.56 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=26.9
Q ss_pred cccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
+||||+.+++.+.. ++|++|+||.|++.-+
T Consensus 40 RysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~ 71 (141)
T cd07291 40 QHEDFIWLHDALIETEDYAGLIIPPAPPKPDF 71 (141)
T ss_pred ccHHHHHHHHHHhccccCCeEEECCCCCCccc
Confidence 58999999999997 6899999999999654
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting |
| >cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=88.00 E-value=23 Score=33.02 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
++-.+..|..|+-..|.+|...|..|+|++...-...-+
T Consensus 172 in~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~p 210 (215)
T cd07641 172 VNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQ 210 (215)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555788899999999999999999999999887665544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar |
| >cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.37 Score=41.00 Aligned_cols=45 Identities=4% Similarity=-0.026 Sum_probs=34.9
Q ss_pred ceEEEeeCCc--------cccccccccccchhhhhcccc--ceEecCCCCccccc
Q psy17920 22 ILSISHFNLE--------QETESCSRFIHGLDSAVKSLV--AVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~--~~v~rry~df~~l~ 66 (393)
.|.|.+..+- .+..+||||+.+++.+...|| ++++|++|++.++.
T Consensus 20 ~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~ 74 (124)
T cd07282 20 AYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVG 74 (124)
T ss_pred EEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccc
Confidence 4777776432 223479999999999999876 68999999999865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort |
| >cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.41 Score=41.68 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=30.2
Q ss_pred ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 33 ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 33 ~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
+..+||||+.+++.++..+|++++|+.|++...+.
T Consensus 66 VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~ 100 (140)
T cd06891 66 VRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYG 100 (140)
T ss_pred eeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCC
Confidence 33468999999999999999999999999986544
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur |
| >cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=86.54 E-value=27 Score=32.30 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHhcCcc----ccccchh
Q psy17920 162 FIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----DRSHLRDALKKTGDTYNELGKLFEEQPK----LDWEPLG 232 (393)
Q Consensus 162 ~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----d~s~L~~al~~lg~~~~~i~~~~~~Q~~----~d~~~l~ 232 (393)
-+.+|-..++.+.......+.. ...|......||+ +.++++.++-.++-....++.++..--+ .-..|+-
T Consensus 17 ~L~k~kk~vkai~~sg~~hv~n-e~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpld 95 (213)
T cd07640 17 SLQRIKKIVKAIHNSGLNHVEN-EEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLD 95 (213)
T ss_pred HHHHHHHHHHHHHHhhHHHHhH-HHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchH
Confidence 3455555555555544443332 2346666777887 3456888888888888888776544222 2223443
Q ss_pred HHHHHHHhHHh-hhhhHH----HHHHHHHHHHHHHHHhhh--hccc--cHHH-HH--HHHHHHHHHHHH-HHHHHHHHHH
Q psy17920 233 DVLHIYKGIIT-SMPDIL----GLHKDILNKKREYEKMTT--ENKM--EANR-LQ--EVLKRTDTVSYA-LLGEINHFHQ 299 (393)
Q Consensus 233 e~L~ey~~ll~-s~~~v~----~~~~~al~k~re~erl~~--e~k~--~~~~-ve--~~~~~~e~is~~-v~~E~~rF~~ 299 (393)
-.|++-.+-.. -.+..| .....++.|.....|... .|-+ +-.+ .+ +.+++|=....| -.--++-.+.
T Consensus 96 sflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~ 175 (213)
T cd07640 96 SLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQM 175 (213)
T ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34433222111 111111 122223333333222111 2222 1111 11 112222111111 1122455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
-|..|+-..|.+|...|..|+|++...-....+
T Consensus 176 KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~p 208 (213)
T cd07640 176 KQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGP 208 (213)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999876655443
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran |
| >cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=86.27 E-value=0.49 Score=39.83 Aligned_cols=32 Identities=6% Similarity=-0.133 Sum_probs=29.3
Q ss_pred ccccccccchhhhhccccceEecCCCCccccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.+||||+.+++.+...+|++++|++|.+.|+.
T Consensus 41 RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~ 72 (116)
T cd07283 41 RRYQDFDWLRNKLEESQPTHLIPPLPEKFVVK 72 (116)
T ss_pred CCccHHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 47999999999999999999999999998874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32 |
| >cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Probab=83.80 E-value=0.72 Score=38.70 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=34.3
Q ss_pred eEEEee--CCc------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 23 LSISHF--NLE------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 23 ~~i~v~--~p~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
|.|.|. .|. .+..+||||..+.+.+...+|+.++|++|.+.++
T Consensus 22 Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 72 (118)
T cd06863 22 YLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRL 72 (118)
T ss_pred EEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCcccc
Confidence 667764 332 2334799999999999999999999999999876
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. |
| >cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=83.79 E-value=1.1 Score=38.92 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred cccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
+||||+.+++.+.. .+|++|+||.|.+--+
T Consensus 40 RysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~ 71 (141)
T cd07292 40 QHEEFIWLHDSFVENEDYAGYIIPPAPPRPDF 71 (141)
T ss_pred ccHhHHHHHHHHhhcccCCcEEECCCCCCccc
Confidence 58999999999996 4899999999988544
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo |
| >cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=83.39 E-value=0.51 Score=39.73 Aligned_cols=32 Identities=3% Similarity=-0.040 Sum_probs=28.9
Q ss_pred ccccccccchhhhhccccceEecCCCCccccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.+||||+.+.+.+...+|++++|++|++.|+.
T Consensus 41 RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~ 72 (116)
T cd07284 41 RRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMK 72 (116)
T ss_pred CCchHHHHHHHHHHHHCCCceeCCCCCcchhh
Confidence 47999999999999999999999999988763
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, |
| >cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=83.24 E-value=0.58 Score=40.06 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=37.8
Q ss_pred cccccCCCceEEEeeCC-ccccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 14 IGLKVMDHILSISHFNL-EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 14 ~~~~~~~~~~~i~v~~p-~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.+++. --.|.|..... -.+..+||||+.++..+...+|++++|++|.+..+..
T Consensus 15 ~G~~~-Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~ 68 (127)
T cd07286 15 KGMKS-YISYKLVPSHTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGR 68 (127)
T ss_pred CCCcC-EEEEEEEEecCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCC
Confidence 55543 22355654321 1222379999999999999999999999999998855
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki |
| >cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Probab=83.02 E-value=0.8 Score=38.91 Aligned_cols=43 Identities=7% Similarity=-0.153 Sum_probs=33.1
Q ss_pred ceEEEee--CCc------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 22 ILSISHF--NLE------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 22 ~~~i~v~--~p~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.|.|.+. .|. .+..+||||..+++.+... |++++|++|.+.|+
T Consensus 21 ~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~ 71 (123)
T cd06894 21 DYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALK 71 (123)
T ss_pred EEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCcee
Confidence 3667664 332 2334799999999999865 99999999999987
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the |
| >PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known | Back alignment and domain information |
|---|
Probab=82.97 E-value=3 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChh
Q psy17920 315 EQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTV 355 (393)
Q Consensus 315 ~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~ 355 (393)
..-+++.+++..+.....+.++.|.|+.++++.+..+.+..
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~ 48 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQR 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45578888999999999999999999999999999887654
|
|
| >KOG2101|consensus | Back alignment and domain information |
|---|
Probab=82.39 E-value=0.72 Score=46.31 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=44.5
Q ss_pred ceEecCCCCcccccC--------------Cccc-------cccCCChHHHHHHHHHHHHHH--HHHhcCCCcccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQ-------KIGRYEEQFIEHRKNQLQSFV--DYVCRHPVLCRSPVWQ 108 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~-------~~g~~~~~Fie~Rr~~L~~fl--~rv~~HPvL~~~~~~~ 108 (393)
..|.|||+||.-||. |.+. ..++|+.+++..|+.+++.|| +..+.||.+..+..+.
T Consensus 154 ~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 154 AVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred ceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhHHHHHHhhhhhccccccchHHhh
Confidence 468999999988876 1112 345889999999999999999 8889999888776444
|
|
| >cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Probab=82.19 E-value=0.71 Score=38.37 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=36.2
Q ss_pred eEEEeeCCccccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
+.|.|.. -....+||||..+.+.+...+|++++|++|.+.++.
T Consensus 21 Y~I~~~~-~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~ 63 (112)
T cd06867 21 YVIRLGG-SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLK 63 (112)
T ss_pred EEEEeee-EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhh
Confidence 6777765 555668999999999999999999999999987653
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back |
| >cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Probab=81.98 E-value=1 Score=37.50 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=35.9
Q ss_pred ceEEEeeCCcc--------ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLEQ--------ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~k--------~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|..+.. ...+||||..+...+...+|++.+|++|.+.++..
T Consensus 20 ~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~ 73 (112)
T cd06861 20 VYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGR 73 (112)
T ss_pred EEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccC
Confidence 37777764321 33478999999999999999999999999988753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P |
| >KOG0521|consensus | Back alignment and domain information |
|---|
Probab=81.89 E-value=93 Score=34.81 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=65.5
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc----cchhHHHHHHHhHHhhhhhHHH----HHHHHHHHHHHH
Q psy17920 191 EYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDW----EPLGDVLHIYKGIITSMPDILG----LHKDILNKKREY 262 (393)
Q Consensus 191 ~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~----~~l~e~L~ey~~ll~s~~~v~~----~~~~al~k~re~ 262 (393)
++..++.+...++.+|+..+..+..++..+..-..+-. .++.-..+.=...+...+..|. .+..++.|+-..
T Consensus 67 d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l 146 (785)
T KOG0521|consen 67 DLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRL 146 (785)
T ss_pred HHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhh
Confidence 34344433333566777777776666654333221111 2222222222222232333332 233344444433
Q ss_pred HHhhhhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 263 EKMTTENKMEA---NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 263 erl~~e~k~~~---~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
-+... .+... +++...+..|....-....=++--+.-|..+|-+.|..|+..|+.|++++
T Consensus 147 ~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g 209 (785)
T KOG0521|consen 147 PKKRR-SKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQG 209 (785)
T ss_pred hhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhccc
Confidence 22221 22211 34444444444443333333444556678899999999999999999999
|
|
| >PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=81.54 E-value=27 Score=34.25 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHH
Q psy17920 274 NRLQEVLKRTDTVSY-------ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQ 346 (393)
Q Consensus 274 ~~ve~~~~~~e~is~-------~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~ 346 (393)
..+..+++.|..+-. .+++||+..+.+-. ..+.--++-|...++..... ..|+.+|+-
T Consensus 182 ~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAm------------eiL~aRqkkAeeLkrltd~A---~~MsE~Ql~ 246 (302)
T PF07139_consen 182 SSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAM------------EILDARQKKAEELKRLTDRA---SQMSEEQLA 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH---hhcCHHHHH
Confidence 345566666766643 35666776666642 12222334455544444332 467777776
Q ss_pred HHhhccChhHHHHHHHHhhHHHHHHHH
Q psy17920 347 EVLKRTDTVSYALLGEINHFHQEQVSQ 373 (393)
Q Consensus 347 ~~~~r~~~~s~~~~ae~~~f~~~~~~d 373 (393)
++ -|||-||.++|=+|
T Consensus 247 EL-----------RadIK~fvs~rk~d 262 (302)
T PF07139_consen 247 EL-----------RADIKHFVSERKYD 262 (302)
T ss_pred HH-----------HHHHHHHhhhhhhH
Confidence 65 48999999999877
|
|
| >PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length | Back alignment and domain information |
|---|
Probab=81.53 E-value=47 Score=31.13 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh-hhhccCCHHHHHHHhhccChh--HH
Q psy17920 281 KRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM-TTENKMEANRLQEVLKRTDTV--SY 357 (393)
Q Consensus 281 ~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l-~~e~k~~~~~~~~~~~r~~~~--s~ 357 (393)
..++.+.+-.+.|+..+..-|..+++.. ....+..++. .....++..+.+-.+...++. .-
T Consensus 100 ~~Y~~~cK~~r~elK~~~~ar~kEikq~----------------~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~ 163 (219)
T PF06730_consen 100 SQYGTICKHARDELKKFNKARNKEIKQL----------------KQLEKLRQKNPSDRQIISQAESELQKASVDATRTTK 163 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3477888889999999988888776532 2222333332 222335555554455444444 45
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 358 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 358 ~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.+-.-|.-|-.+|+.|+|..+..|+.-+-.|+=+
T Consensus 164 ~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaK 197 (219)
T PF06730_consen 164 QLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAK 197 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556689999999999999999999999888743
|
Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown. |
| >cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like | Back alignment and domain information |
|---|
Probab=81.31 E-value=46 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
+.=..--||-.+..+-.+|...|-.|+..|..||+.
T Consensus 160 ~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~q 195 (207)
T cd07634 160 SLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHE 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555689999999999999999999999999974
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain |
| >cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Probab=81.11 E-value=1 Score=38.00 Aligned_cols=43 Identities=2% Similarity=-0.059 Sum_probs=34.6
Q ss_pred eEEEeeCCc--------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 23 LSISHFNLE--------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 23 ~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
|.|.|..+. .+..+||||..+.+.+...+|++.+|++|.+.++
T Consensus 26 Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 76 (120)
T cd06865 26 YKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVV 76 (120)
T ss_pred EEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccc
Confidence 667776542 2223699999999999999999999999998887
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu |
| >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Probab=80.54 E-value=1 Score=38.17 Aligned_cols=34 Identities=6% Similarity=0.023 Sum_probs=30.7
Q ss_pred cccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 34 TESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 34 ~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
..+||||..+++.+...+|++.+|++|.+.|+.+
T Consensus 50 ~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 83 (120)
T cd06868 50 SKKYSEFEELYKKLSEKYPGTILPPLPRKALFVS 83 (120)
T ss_pred eCCcHHHHHHHHHHHHHCCCCCCCCCCCCcccCC
Confidence 4579999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.2 Score=37.84 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=26.3
Q ss_pred ccccccccchhhhhccccceEecCCCCcccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.+||||+.+++.+.. .|++++|++|.+.++
T Consensus 42 RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~ 71 (123)
T cd07293 42 RRYSDFEWLRSELER-ESKVVVPPLPGKALF 71 (123)
T ss_pred CCchHHHHHHHHHHh-ccCCccCCCCCCchh
Confidence 479999999999875 488999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 393 | ||||
| 3dyu_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), H32 Leng | 1e-47 | ||
| 2raj_A | 392 | So4 Bound Px-Bar Membrane Remodeling Unit Of Sortin | 2e-47 | ||
| 3dyt_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), C2221 Le | 4e-46 | ||
| 2rai_A | 392 | The Px-Bar Membrane Remodeling Unit Of Sorting Nexi | 4e-46 | ||
| 4akv_A | 386 | Crystal Structure Of Human Sorting Nexin 33 (Snx33) | 7e-44 |
| >pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32 Length = 366 | Back alignment and structure |
|
| >pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
| >pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221 Length = 366 | Back alignment and structure |
|
| >pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
| >pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33) Length = 386 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 1e-55
Identities = 98/282 (34%), Positives = 151/282 (53%), Gaps = 18/282 (6%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 85 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 144
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 145 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 204
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 205 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 264
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 265 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 324
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQK--DILNK-KREYEKM 334
HFH ++ N+ ++ +L +Q+ FY+ + L + + M
Sbjct: 325 HFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM 366
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 1e-53
Identities = 90/267 (33%), Positives = 147/267 (55%), Gaps = 15/267 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE FIE RK +L ++D++ HPVL + +QHF++C D+K+WK GKR AEKD
Sbjct: 105 QATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDE 164
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
++G S L + P ++E ++ F +D +V L V ++ +K +++
Sbjct: 165 MVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRK 224
Query: 191 EYQKIGID---------------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
E+QK+G L A+ TG TY +G++F EQPK D + D L
Sbjct: 225 EFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTL 284
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
+Y+G++++ PDI+ L K K +E ++M+ E +M + + +R V +AL E+N
Sbjct: 285 SLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMN 344
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQK 322
HFHQ + M+++L +QI FYQ+
Sbjct: 345 HFHQRRELDFKHMMQNYLRQQILFYQR 371
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-13
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 61 KCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC-TDEKRW 119
K G +EE FIE R+ L+ F++ + HP+ F+ ++ +
Sbjct: 77 KALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNY 136
Query: 120 KAGKRM 125
GK
Sbjct: 137 VPGKSG 142
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRW 119
+ R+ + FIE R+ L F++ + HP L + ++ F+T +
Sbjct: 81 GMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELS 129
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWK 120
K+ +E R+ QL+ ++ V + P+L S + F+ ++ +
Sbjct: 66 KLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQ 114
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-11
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 60 KKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD 115
K + K + K +F+E R+ L+ ++ + HP + + P + F+ +
Sbjct: 73 KSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 128
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 8e-11
Identities = 62/477 (12%), Positives = 130/477 (27%), Gaps = 136/477 (28%)
Query: 27 HFNLE-QETESCSRFI--HGLDSAVKSL-VAVVADQTKKCQTLYKREYQKI---GRYEEQ 79
H + E E + + I D+ V + V D K L K E I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSG 63
Query: 80 -------FIEHRKNQLQSFV------DY---------VCRHPVLCRSPVWQHFITCTDEK 117
+ ++ +Q FV +Y R P S + + +I D +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRD-R 118
Query: 118 RWKAGKRMAEKDNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKS-LVAV 176
+ + A K N+ +L + L + + + I G+ + K+ +
Sbjct: 119 LYNDNQVFA-KYNVSRLQPYLKLRQ--------ALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 177 VADQTK---------------KC----------QTLYKREYQKIGIDRSHLRDALKKTGD 211
V K C Q L + H + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 212 TYNELGKLFEEQPK------LD--WEPLGDVLHIY----KGIIT----SMPDILGL---- 251
EL +L + +P L + + K ++T + D L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 252 HKDILNKKREYEKMTTEN------KMEANRLQEVLKRTDTVSYALLGE--------INHF 297
H + + ++ L + T+ +++ E +++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 298 HQEQVSQINAAMKSFL-----TEQINFYQ------KD---------IL-NKKREYEKMTT 336
++ ++S L E + ++ + + M
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 337 ENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQIN--AAMKSFLTEQINFYQK 391
NK+ L V K+ + I + E ++ A+ + + N +
Sbjct: 408 VNKLHKYSL--VEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 62/500 (12%), Positives = 145/500 (29%), Gaps = 166/500 (33%)
Query: 3 VPPGDLNIVELIGLKVMDHILSI-SHFNLEQETESCSRFIHGLDSAVKS-LVAVVADQTK 60
+++ ++ LK+ +L + N+ I G+ + K+ + V K
Sbjct: 126 FAKYNVSRLQPY-LKLRQALLELRPAKNV---------LIDGVLGSGKTWVALDVCLSYK 175
Query: 61 ---------------KC----------QTLYKREYQKIGRYEEQF--IEHRKNQLQSFVD 93
C Q L + + I+ R + +Q+ +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 94 YVCRHPVLCRS----------PVWQHF-ITC-----TDEKRWKAGKRMAEKDNLLGPSLF 137
+ + W F ++C T R + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---------RFKQVTDFLS---- 282
Query: 138 LAIETPERSISHFNLE-QETESCSRFIHGLDSAVKSL-----------VAVVADQTKKCQ 185
A T S+ H ++ E S + LD + L ++++A+ +
Sbjct: 283 -AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 186 TLYKREYQKIGIDRSHLRDALKKTGDT---------YNELGKLFEEQPKL---------- 226
+ ++ + D+ L ++ + + ++ L +F +
Sbjct: 342 ATWDN-WKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWF 397
Query: 227 ----------------------DWEPLGDVLH-IYKGIITSMPDILGLHKDILNKKREYE 263
+ + IY + + + LH+ I++ +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 264 KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK------SFLT--- 314
+++ + D Y+ +G +H + + + FL
Sbjct: 458 TFDSDDL--------IPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 315 -----------------EQINFYQKDILNKKREYEKMTTENKMEANRLQEVL---KRTDT 354
+Q+ FY+ I + +YE++ +++E L K TD
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 355 VSYALLGEINHFHQEQVSQI 374
+ AL+ E +E Q+
Sbjct: 568 LRIALMAEDEAIFEEAHKQV 587
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 3e-09
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD-----EKRWKAGKRMAEK 128
++ FI+ R+ L F+ + R+P L P + F+ + +R K
Sbjct: 74 DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPSEDEDERSTSK 133
Query: 129 DNLLGPSLFLAIETP 143
+ ++ L
Sbjct: 134 PHSTSRNINLGPTGN 148
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCTD 115
R+ + IE R+ L +++ V HP+L S V FI
Sbjct: 117 NRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Length = 161 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKA 121
Q++ + + + F+ + HPVL + + F+ + +
Sbjct: 107 QELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRR 157
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110
IG+ +E R+ L+ ++ + V HF
Sbjct: 83 IGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHF 120
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| 4akv_A | 386 | Sorting nexin-33; transport protein, organelle bio | 100.0 | |
| 3dyt_A | 366 | Sorting nexin-9; 3-helix bundle, BAR domain, PX do | 100.0 | |
| 2csk_A | 146 | Sorting nexin 12; SNX12, PX domain, structural gen | 99.76 | |
| 3hpc_X | 161 | SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph | 99.75 | |
| 3iq2_A | 138 | Sorting nexin-7; SNX7, PHOX, protein signalling, S | 99.74 | |
| 2i4k_A | 128 | Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al | 99.66 | |
| 1ocs_A | 162 | Sorting nexin GRD19; sorting protein, PX-domain, y | 99.66 | |
| 1xte_A | 154 | Serine/threonine-protein kinase SGK3; CISK, PX dom | 99.64 | |
| 1kmd_A | 117 | VAM7P, vacuolar morphogenesis protein VAM7; PX dom | 99.61 | |
| 3lui_A | 115 | Sorting nexin-17, SNX17; PX domain, endosome, phos | 99.59 | |
| 3p0c_A | 130 | Nischarin; structural genomics, structural genomic | 99.5 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 99.42 | |
| 1h6h_A | 143 | Neutrophil cytosol factor 4; PX domain; HET: PIB; | 99.38 | |
| 4akv_A | 386 | Sorting nexin-33; transport protein, organelle bio | 99.37 | |
| 2ar5_A | 121 | Phosphoinositide 3-kinase; PX domain, transferase; | 99.37 | |
| 3dyt_A | 366 | Sorting nexin-9; 3-helix bundle, BAR domain, PX do | 99.35 | |
| 4az9_A | 129 | Sorting nexin-24; protein transport; 1.75A {Homo s | 99.34 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 99.24 | |
| 2iwl_X | 140 | Phosphatidylinositol-4-phosphate 3-kinase C2 domai | 99.21 | |
| 1kq6_A | 141 | NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha | 99.19 | |
| 1uru_A | 244 | Amphiphysin; endocytosis, coiled-coil, membrane cu | 98.72 | |
| 2fic_A | 251 | Bridging integrator 1; BAR domain, homodimer, coil | 98.65 | |
| 2l73_A | 149 | NADPH oxidase organizer 1; cell membrane, PX domai | 98.54 | |
| 2dyb_A | 341 | Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid | 98.43 | |
| 2v6v_A | 156 | BUD emergence protein 1; homotypic fusion, regulat | 98.12 | |
| 1zww_A | 256 | SH3-containing GRB2-like protein 2; coiled coil, t | 97.84 | |
| 2z0v_A | 240 | SH3-containing GRB2-like protein 3; helix bundle, | 97.83 | |
| 4avm_A | 237 | Bridging integrator 2; protein binding, plasma mem | 97.53 | |
| 4a3a_A | 243 | Amphiphysin; structural genomics, invagination, kn | 97.49 | |
| 2q12_A | 265 | DIP13 alpha, DCC-interacting protein 13 alpha; APP | 97.36 | |
| 2wwe_A | 127 | Phosphoinositide-3-kinase, class 2, gamma polypept | 97.25 | |
| 2q13_A | 385 | DCC-interacting protein 13 alpha; APPL1, BAR domai | 97.24 | |
| 4h8s_A | 407 | DCC-interacting protein 13-beta; BAR domain, pleck | 96.55 | |
| 1i4d_A | 224 | Arfaptin 2, partner of RAC1; coiled coil, G-protei | 95.19 | |
| 3iq2_A | 138 | Sorting nexin-7; SNX7, PHOX, protein signalling, S | 92.32 | |
| 2fic_A | 251 | Bridging integrator 1; BAR domain, homodimer, coil | 90.38 | |
| 3hpc_X | 161 | SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph | 86.3 | |
| 4h8s_A | 407 | DCC-interacting protein 13-beta; BAR domain, pleck | 82.89 | |
| 2csk_A | 146 | Sorting nexin 12; SNX12, PX domain, structural gen | 82.61 | |
| 2i4k_A | 128 | Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al | 81.48 |
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=449.53 Aligned_cols=321 Identities=31% Similarity=0.534 Sum_probs=284.2
Q ss_pred cccccccccCCCceEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC--------------Cc
Q psy17920 10 IVELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK--------------RE 69 (393)
Q Consensus 10 ~~~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~--------------P~ 69 (393)
...||.|++....|+|+|+||+|+++. .|++.|+.+ ...+|.|||+||.|||+ |+
T Consensus 29 ~~~~~~w~~~~~~~~i~V~dp~k~~~~-----~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~ 103 (386)
T 4akv_A 29 GPRGPQWKANPHPFACSVEDPTKQTKF-----KGIKSYISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPE 103 (386)
T ss_dssp CTTSSEECCCSSCCCEEEECC-----------------CCEEEEETTSSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCC
T ss_pred cCCCceeecCCCCeEEEEcCceEecCC-----CCCcCeEEEEEEEEeCCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 368999999999999999999999831 144555442 23579999999999999 89
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCCc
Q psy17920 70 YQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISH 149 (393)
Q Consensus 70 K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~ 149 (393)
|.+.|+|+++|||+||++|++||++|+.||+|+.|+.|+.||+++++..|+..+++++++++.|++|+.++..|..++++
T Consensus 104 K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~~~~~~~~ 183 (386)
T 4akv_A 104 KQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDL 183 (386)
T ss_dssp CC------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCSHHHHHHHHHHHTCSCCGGGGGGTSBCCSCCCCH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCChhhHHHhhhhccCCCccchHHHHHhcCCccccCh
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999888878889
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hhHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------------RSHLRDALKKTGDTYN 214 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------------~s~L~~al~~lg~~~~ 214 (393)
.++++.++.++.|++.|+.++.+|.+.+.++++++.+.++++|+++|.. .+.|++||..+|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e 263 (386)
T 4akv_A 184 QDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYE 263 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998777788888776661 2359999999999999
Q ss_pred HHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 215 ELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 215 ~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.+++++.+|+..|+.+|.|+|++|.+++.++|++++.|+.+|+|+++++|+..+||+++.++++++++|+.|++++++||
T Consensus 264 ~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El 343 (386)
T 4akv_A 264 AIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEM 343 (386)
T ss_dssp HHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+||+.+|+.||+.+|++|++.||+||++++..|....+.+.
T Consensus 344 ~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 344 NHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987764
|
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=445.52 Aligned_cols=320 Identities=32% Similarity=0.556 Sum_probs=283.6
Q ss_pred ccccccccCCCceEEEeeCCccccccccccccchhhhhc------cccceEecCCCCcccccC---------------Cc
Q psy17920 11 VELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVK------SLVAVVADQTKKCQTLYK---------------RE 69 (393)
Q Consensus 11 ~~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~------~~~~~v~rry~df~~l~~---------------P~ 69 (393)
..||.|++..+.|+|+|+||+|++.. .|++.|+. ....+|.|||+||.|||+ |+
T Consensus 9 ~~~~~w~~~~~~~~i~V~dp~k~~~~-----~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~ 83 (366)
T 3dyt_A 9 DYGPMWVYPTSTFDCVVADPRKGSKM-----YGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPD 83 (366)
T ss_dssp TTEEEECCCSSCCCEEEECGGGSSSC-----CCCCSSCEEEEEETTCSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-
T ss_pred CCCCcccCCCCCeEEEEcCceeecCC-----CCCcCeEEEEEEEecCcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcC
Confidence 37999999999999999999999831 13344443 223579999999999998 89
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCCc
Q psy17920 70 YQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISH 149 (393)
Q Consensus 70 K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~ 149 (393)
|.+.|+|+++||++||++|++||++|+.||+|+.|+.|+.||+++++..|+..++++++++..|++|++++.+|..+.++
T Consensus 84 K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (366)
T 3dyt_A 84 KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDL 163 (366)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSHHHHHHHHHHHHTCCCCGGGGGGGEEESSCCCCH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCchhhHHHHhhhhccCcccchHHHHHhcCCCCCCCH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999888878888
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hhHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------------RSHLRDALKKTGDTYN 214 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------------~s~L~~al~~lg~~~~ 214 (393)
.+++..++.++.|++.|+.++.+|.+++.++++++...++++|..+|.. ++.|++||..+|++++
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~ 243 (366)
T 3dyt_A 164 VEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYE 243 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777777777766661 2359999999999999
Q ss_pred HHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 215 ELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 215 ~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.+++++++|+..|+.+|.|+|++|.++++++|++++.|..+|+|+++++|+..+||++..++++++.+|+.|++++++||
T Consensus 244 ~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~~~~K~~~~~~~~~~~r~e~is~~~~~El 323 (366)
T 3dyt_A 244 EIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEM 323 (366)
T ss_dssp HHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+||+.+|+.||+.+|++|++.||+||++++..|....+.+.
T Consensus 324 ~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~ 364 (366)
T 3dyt_A 324 NHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFP 364 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-20 Score=160.80 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=86.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhc-c---cc---ceEecCCCCcccccC-------------Cccccc-----
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVK-S---LV---AVVADQTKKCQTLYK-------------REYQKI----- 73 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~---~~---~~v~rry~df~~l~~-------------P~K~~~----- 73 (393)
.++.++|+|+||++++++.+.|+. +...+. . +. ..|.|||+||.|||+ |+|.+.
T Consensus 7 ~~~~l~i~V~dp~~~~~g~~~yv~-Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~ 85 (146)
T 2csk_A 7 GSNFLEIDIFNPQTVGVGRARFTT-YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPF 85 (146)
T ss_dssp CSCCCEEEEEEEEEESSSSSCEEE-EEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTT
T ss_pred CCCcEEEEEcCceEecCCCCCEEE-EEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcccc
Confidence 456799999999999885443321 111111 1 11 379999999999998 899886
Q ss_pred ----cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc-hhhHhhhhhhh
Q psy17920 74 ----GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD-EKRWKAGKRMA 126 (393)
Q Consensus 74 ----g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~-e~~wk~~~~~a 126 (393)
|+++++|||+||++||+||++|+.||+|+.|+.|+.||+.++ ++.|+.+++++
T Consensus 86 ~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~ 143 (146)
T 2csk_A 86 RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKSGP 143 (146)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCCSSCCCCSCSS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchhhhhccCccCC
Confidence 789999999999999999999999999999999999999873 67788877664
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-20 Score=161.75 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhccc---cceEecCCCCcccccC----------------Ccccccc-----
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVKSL---VAVVADQTKKCQTLYK----------------REYQKIG----- 74 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~---~~~v~rry~df~~l~~----------------P~K~~~g----- 74 (393)
.++.|+|+|+||.++++ |-.|.....+-...+ +.+|.|||+||.|||+ |+|.+.|
T Consensus 8 ~~~~l~i~V~dp~~~~~-~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K 86 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERD-KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREK 86 (161)
T ss_dssp CSCSEEEEEEEEEEETT-EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHH
T ss_pred CCCeEEEEECCCeEecC-CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhh
Confidence 45679999999999998 322221111111112 2379999999999998 8998753
Q ss_pred ---------C------------CChHHHHHHH---HHHHHHHHHHhcCCCccccccccccccccch
Q psy17920 75 ---------R------------YEEQFIEHRK---NQLQSFVDYVCRHPVLCRSPVWQHFITCTDE 116 (393)
Q Consensus 75 ---------~------------~~~~Fie~Rr---~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e 116 (393)
+ |+++|||.|| .+||+||++|+.||+|+.|+.|+.||+++++
T Consensus 87 ~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 87 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred hhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 2 5678999754 4599999999999999999999999999843
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-19 Score=156.25 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=74.7
Q ss_pred CceEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Cccccc----cC
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKI----GR 75 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~----g~ 75 (393)
.+++|+|+||+++|++.+.|+ .+...+. ..| ..|.|||+||.||++ |+|.+. |+
T Consensus 7 ~~l~i~V~dp~~~~~g~~~yv-~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~ 85 (138)
T 3iq2_A 7 KDLFITVDEPESHVTTIETFI-TYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER 85 (138)
T ss_dssp CCCEEEEEEEEEEECSSCEEE-EEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGG
T ss_pred ceEEEEECCCEEecCCCCCEE-EEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhcccccc
Confidence 469999999999998544332 1111111 112 269999999999999 899875 47
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+++|||+||++||.||++|+.||+|+.|+.|+.||+.+
T Consensus 86 ~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 124 (138)
T 3iq2_A 86 FNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 124 (138)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCC
Confidence 899999999999999999999999999999999999986
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-18 Score=144.35 Aligned_cols=92 Identities=20% Similarity=0.365 Sum_probs=73.6
Q ss_pred ceEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC----------------CccccccC---
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK----------------REYQKIGR--- 75 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~----------------P~K~~~g~--- 75 (393)
+++|+|.||++++++.+.|+ .+...+. .. ...|.|||+||.|||+ |+|.+.|+
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~-~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~ 81 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYV-AYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCB-CCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred eEEEEECCceEecCCCcCEE-EEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence 47899999999998543332 1111111 11 2379999999999998 78988763
Q ss_pred -------CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 76 -------YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 76 -------~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
++++|||+||++||+||++|+.||+|+.|+.|+.||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 589999999999999999999999999999999999975
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-18 Score=150.47 Aligned_cols=95 Identities=22% Similarity=0.337 Sum_probs=75.1
Q ss_pred CCCceEEEeeCCccc---c-ccccccccchhhhhc----ccc---ceEecCCCCcccccC-------------------C
Q psy17920 19 MDHILSISHFNLEQE---T-ESCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK-------------------R 68 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~---~-~~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~-------------------P 68 (393)
.++.++|+|+||+++ | ++.+.|+. +...+. .++ ..|.|||+||.|||+ |
T Consensus 32 p~~~l~i~V~dp~~~~~~g~~~~~~yv~-Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP 110 (162)
T 1ocs_A 32 PENFLEIEVHNPKTHIPNGMDSKGMFTD-YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLP 110 (162)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEE-EEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCT
T ss_pred CCCeEEEEEeCCEEeeccCCCCCCCeEE-EEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCC
Confidence 345599999999999 6 43333221 111111 122 279999999999987 8
Q ss_pred ccccc-cCCChHHHHHHHHHHHHHHHHHhcCCCccc-ccccccccccc
Q psy17920 69 EYQKI-GRYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCT 114 (393)
Q Consensus 69 ~K~~~-g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~-~~~~~~FL~~~ 114 (393)
+|.+. |+|+++|||+||++||+||++|+.||+|.. |+.|+.||+.+
T Consensus 111 ~K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 111 GKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 99986 589999999999999999999999999998 89999999975
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-17 Score=145.80 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=81.9
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcc--ccceEecCCCCcccccC-------------Ccccccc-CCChHHH
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKS--LVAVVADQTKKCQTLYK-------------REYQKIG-RYEEQFI 81 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fi 81 (393)
.+.+.+.|+|.+|++++++.+.|+. +...+.. ....|.|||+||.|||+ |+|.+.| +++++||
T Consensus 3 ~~~~~~~v~I~~~~~~~~~~~~~~~-Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~g~~~~~~~i 81 (154)
T 1xte_A 3 YKESCPSVSIPSSDEHREKKKRFTV-YKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFI 81 (154)
T ss_dssp -CCCCCEEEEEEEEEEEETTEEEEE-EEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHH
T ss_pred CCCCCCEEEECCcEEEecCCCCEEE-EEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCccccCCCCCHHHH
Confidence 4677889999999999874443321 1111111 12379999999999999 8999999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccchhhHh
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWK 120 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk 120 (393)
|+||++|+.||++|+.||.|+.++.|+.||+.++...|+
T Consensus 82 e~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~~~~ 120 (154)
T 1xte_A 82 KQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQS 120 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGGGC-
T ss_pred HHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCcccc
Confidence 999999999999999999999999999999998655554
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-17 Score=136.38 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC--------------Cccccc-------cCCC
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKI-------GRYE 77 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~-------g~~~ 77 (393)
|.+.++|+|.||++ +.+|..|... + -...|.|||+||.|||+ |+|.+. |+++
T Consensus 2 m~~~~~v~I~~~~~-~~~~~~Y~I~----v--~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~~~~~~~ 74 (117)
T 1kmd_A 2 MSEKLRIKVDDVKI-NPKYVLYGVS----T--PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDD 74 (117)
T ss_dssp CCCCCCCEEEEEEE-CSSCEEEEEE----C--SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTC
T ss_pred CCCCEEEEECCcee-cCCEEEEEEE----E--ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEecccccccCCCC
Confidence 56789999999999 3333322211 1 13479999999999998 889886 7999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCc---ccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHPVL---CRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HPvL---~~~~~~~~FL~~~ 114 (393)
++|||+||++||+||++|+.||+| +.|+.|+.||+.+
T Consensus 75 ~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~ 114 (117)
T 1kmd_A 75 PEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114 (117)
T ss_dssp HHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCC
Confidence 999999999999999999999987 6899999999975
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-17 Score=136.30 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred CceEEEeeCCccccccccccccchhhhhc-----cccceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK-----SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-----~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
..+.|+|.++++.++. .|++.|+. ..+..|.|||+||.|||+ |+|.+.| ++++||
T Consensus 2 ~~l~v~Ip~~~~~~~~-----~g~~~y~~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~i 75 (115)
T 3lui_A 2 NAMHFSIPETESRSGD-----SGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAEV 75 (115)
T ss_dssp ---CEEEEEEEEEC----------CCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHHH
T ss_pred CcEEEEECCeEEecCC-----CCCCCEEEEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHHH
Confidence 3578999999998752 12233332 223479999999999999 8999885 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+||++||.||++|+.||.|+.|+.|+.||+.+
T Consensus 76 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 108 (115)
T 3lui_A 76 EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhhcChHHHHHHCcC
Confidence 999999999999999999999999999999986
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-15 Score=129.85 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred ccccccCCCceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC-------------CccccccCCChH
Q psy17920 13 LIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK-------------REYQKIGRYEEQ 79 (393)
Q Consensus 13 ~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~-------------P~K~~~g~~~~~ 79 (393)
|+.-+...+...|+|...+.. ++|..|..... .......|.|||+||.||++ |+|.+.|+++++
T Consensus 13 ~~~~~v~ips~~v~I~~~~~~-~~y~~Y~I~v~--~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~g~~~~~ 89 (130)
T 3p0c_A 13 LGTENLYFQSMEARVVGSELV-DTYTVYIIQVT--DGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRS 89 (130)
T ss_dssp ----CCCEECCEEEEEEEECS-SSSCEEEEEEE--CSSCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCCSCCCSC
T ss_pred CCCceeEeeeeEEEEEecccc-CCEEEEEEEEE--ECCeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCccccccCCHH
Confidence 444444455677777665442 22222211111 01122479999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|||+||++|++||++|+.||.|..|+.|+.||+.+
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~ 124 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH 124 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCC
Confidence 99999999999999999999999999999999976
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-14 Score=122.03 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=68.5
Q ss_pred CceEEEeeCCccccccccccccchhhhhc--cccceEecCCCCcccccC--------------CccccccCCChHHHHHH
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHR 84 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~R 84 (393)
+.+.|+|.+++..+++.+.|+ .+...+. .....|.|||+||.|||+ |+|.+.|+++++|||+|
T Consensus 4 ~~i~VsIp~~~~~~~~~~~~~-~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ie~R 82 (134)
T 2v14_A 4 DPIKISIPRYVLCGQGKDAHF-EFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAER 82 (134)
T ss_dssp SCEEEEEEEEEEESSTTSCEE-EEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHHHHHH
T ss_pred CCEEEEECcEEEEecCCCCEE-EEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHHHHHH
Confidence 468899999998876433322 1111111 122479999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-cccccccc
Q psy17920 85 KNQLQSFVDYVCRHPV-LCRSPVWQ 108 (393)
Q Consensus 85 r~~L~~fl~rv~~HPv-L~~~~~~~ 108 (393)
|++||.||++|+.||. |+.|+.+.
T Consensus 83 r~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 83 RSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred HHHHHHHHHHHHhChHhhcCCHHHH
Confidence 9999999999999996 88888543
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-14 Score=122.81 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=73.1
Q ss_pred ccCCCceEEEeeCCccccccccccc-cchhhhhccc-cceEecCCCCcccccC----------------------Ccccc
Q psy17920 17 KVMDHILSISHFNLEQETESCSRFI-HGLDSAVKSL-VAVVADQTKKCQTLYK----------------------REYQK 72 (393)
Q Consensus 17 ~~~~~~~~i~v~~p~k~~~~~s~f~-~~~~~~~~~~-~~~v~rry~df~~l~~----------------------P~K~~ 72 (393)
.+....+.|+|.++++... .+.++ +.+....... ...|.|||+||.|||. |+|.+
T Consensus 15 ~~~~~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~ 93 (143)
T 1h6h_A 15 LPDDVAISANIADIEEKRG-FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY 93 (143)
T ss_dssp SCTTCEEEEEEEEEEEECS-SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred CccCCeEEEEEcCccccCC-CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcc
Confidence 4445568999999987543 23221 1111111111 2379999999999987 67777
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 73 ~g~~~~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
.|+ +++|||+||++|+.||++|+.||. |+.|+.++.||+.+
T Consensus 94 ~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~ 135 (143)
T 1h6h_A 94 VGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135 (143)
T ss_dssp SSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred cCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCC
Confidence 887 899999999999999999999997 99999999999986
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-11 Score=116.98 Aligned_cols=70 Identities=31% Similarity=0.573 Sum_probs=67.0
Q ss_pred HHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 323 DILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.++.++++++..+||+++++++++.+|++.||+++.+||+||+.+|+.||+.+|..||+.||+||+++
T Consensus 303 ~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~ 372 (386)
T 4akv_A 303 GAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRV 372 (386)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999999999999999999999999999999999999999999986
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-14 Score=118.29 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccCC-ChHHHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGRY-EEQFIEHR 84 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~~-~~~Fie~R 84 (393)
...|+|.+|++...+...+++.+.....+. ...|.|||+||.||+. |+|.+.|++ +++|+|+|
T Consensus 5 i~~v~V~~~ek~~~~~k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~R 84 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKR 84 (121)
T ss_dssp EEEEEEEEEECCCSSSSCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHHH
T ss_pred EEEEEECcEEEEecCCCcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHHH
Confidence 467999999998764333333332222232 3479999999999998 899999976 67899999
Q ss_pred HHHHHHHHHHHhcC-CCcccccccccccccc
Q psy17920 85 KNQLQSFVDYVCRH-PVLCRSPVWQHFITCT 114 (393)
Q Consensus 85 r~~L~~fl~rv~~H-PvL~~~~~~~~FL~~~ 114 (393)
|.+|+.||++|+.+ |.|+.|+.++.|++-+
T Consensus 85 r~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~ 115 (121)
T 2ar5_A 85 KIELNSYLQSLMNASTDVAECDLVCTFFHGS 115 (121)
T ss_dssp HHHHHHHHHHHHTSCHHHHTSHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhCCchhcCCHHHHHHcCCc
Confidence 99999999999886 6999999999999743
|
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=115.52 Aligned_cols=70 Identities=30% Similarity=0.602 Sum_probs=66.4
Q ss_pred HHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 323 DILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.++.+.++++..+||+++.+++.+++|++.||+++.+||+||+.+|+.||+.+|..||+.||+||+++
T Consensus 283 ~aL~k~~e~~kl~~~~K~~~~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~ 352 (366)
T 3dyt_A 283 GAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETI 352 (366)
T ss_dssp HHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999999999999999999999999999999999999999999999999986
|
| >4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-13 Score=116.28 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCceEEEeeCCccccccccc-cccchhhhhcc--ccceEecCCCCcccccC-----------CccccccCCChHHHHHHH
Q psy17920 20 DHILSISHFNLEQETESCSR-FIHGLDSAVKS--LVAVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRK 85 (393)
Q Consensus 20 ~~~~~i~v~~p~k~~~~~s~-f~~~~~~~~~~--~~~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr 85 (393)
-..++|+|.++...+++.+. |+ .+..-|.. ....|.|||+||.||++ |+|. .++++++|||+||
T Consensus 20 ~~~~~V~Ip~~~~~~~~~~k~y~-vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~~p~lP~K~-~~~~~~~~ie~Rr 97 (129)
T 4az9_A 20 FQSMEVYIPSFRYEESDLERGYT-VFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKH-VRNWVPKVLEQRR 97 (129)
T ss_dssp CCCCEEEEEEEEEECCTTSCCEE-EEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSCCCCCCCSC-CSCCCHHHHHHHH
T ss_pred cceeEEEECcEEEEecCCCCCEE-EEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCCCCCCCccc-ccCCCHHHHHHHH
Confidence 44578888888777663321 21 11111111 12369999999999999 6655 5789999999999
Q ss_pred HHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 86 NQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 86 ~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+||.||++|+.||.+. ++.|..||+..
T Consensus 98 ~~Le~yL~~ll~~~~~~-~~~l~~FL~~~ 125 (129)
T 4az9_A 98 QGLETYLQAVILENEEL-PKLFLDFLNVR 125 (129)
T ss_dssp HHHHHHHHHHHHHCSSC-CHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchhh-CHHHHHHCCCC
Confidence 99999999999999875 68899999864
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-13 Score=113.73 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=55.2
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+|.|||+||.||++ |+|.+ ++|+++|||+||++||+||++|+.||.+. ++.|+.||+.+
T Consensus 46 ~~V~RRYSdF~~Lh~~L~~~~~iP~lP~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~ 116 (128)
T 2ett_A 46 HTVPRRYSEFHALHKRIKKLYKVPDFPSKRL-PNWRTRGLEQRRQGLEAYIQGILYLNQEV-PKELLEFLRLR 116 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHTTSSCCCCCCSSC-CCSSSSCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCT
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCcc-CCCCHHHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCc
Confidence 479999999999999 88885 58999999999999999999999999877 68999999976
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-13 Score=116.36 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=68.0
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccCC-ChHH
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGRY-EEQF 80 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~~-~~~F 80 (393)
.......|+|.++++..++...+++.+.....+. ...|.|||+||.|||. |+|.+.|++ +++|
T Consensus 16 ~~~~i~~v~I~~~ek~~~~~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~~~~~~ 95 (140)
T 2iwl_X 16 QDGRIKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDV 95 (140)
T ss_dssp HHCCEEEEEEEEEEECCSSSSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------CC
T ss_pred CCCeeEEEEECcEEEEecCCCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCccchHHH
Confidence 3445578999999988753333332222222222 2379999999999999 899999977 6779
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITCT 114 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~-HPvL~~~~~~~~FL~~~ 114 (393)
+|+||.+|+.||+.|+. ||.++.|+.++.||+..
T Consensus 96 ~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 96 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 99999999999999998 56999999999999985
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-12 Score=110.74 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc-cceEecCCCCcccccC-----------------------CccccccCCC
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL-VAVVADQTKKCQTLYK-----------------------REYQKIGRYE 77 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~-~~~v~rry~df~~l~~-----------------------P~K~~~g~~~ 77 (393)
...|+|.++++.+.+.+.+++.+....... ...|.|||+||.|||. |+|.+.|+
T Consensus 6 i~~v~V~~~ek~~~~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~~-- 83 (141)
T 1kq6_A 6 IRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDG-- 83 (141)
T ss_dssp EEEEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCS--
T ss_pred EEEEEEccEEEecCCCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccCC--
Confidence 467999999998864333332222221122 2379999999999997 45556664
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
++|+|+||.+|+.||+.|+.|| .++.|+.++.||+..
T Consensus 84 ~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~ 121 (141)
T 1kq6_A 84 QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVR 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCC
Confidence 8999999999999999999998 599999999999886
|
| >1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-06 Score=77.69 Aligned_cols=181 Identities=9% Similarity=0.054 Sum_probs=119.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKK------CQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk------~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
.|..++.....++.++..+..|.+-+...... ....++..+..+....+....++..+++.++.+. .+...
T Consensus 35 ~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 111 (244)
T 1uru_A 35 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLW---ADFAH 111 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH---HHHHH
Confidence 36666666666666666665555544443221 1123444455543321111233444444333322 22222
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-------hccc--cHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-------ENKM--EANRLQEVLKRTDTVSYALLG 292 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-------e~k~--~~~~ve~~~~~~e~is~~v~~ 292 (393)
.-...+.++|+.|.+.+..++..+..+...+-.+..+ +++.. +.++ .+.+++.++..++.++..++.
T Consensus 112 ~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~ 191 (244)
T 1uru_A 112 KLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHD 191 (244)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235699999999999999999888877654433332 22221 2233 247899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 293 EINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 293 E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|+.+|...+...+...+..|+..|+.||.+++..|....+.+.
T Consensus 192 eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~ 234 (244)
T 1uru_A 192 ELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD 234 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877554
|
| >2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.1e-06 Score=76.62 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=116.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHH-HHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGIDRSHLRDALKKTGDTYNE-LGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~-i~~~~~~Q~~ 225 (393)
|..|+.....+..++..+..|.+-+..+.... ...++..+..+....+.-..++..++..++. +.++....
T Consensus 51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~l-- 128 (251)
T 2fic_A 51 DEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKL-- 128 (251)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHHHHHHH--
Confidence 55666666666666666666555444433211 1123344444322111111233344444442 22222211
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~ 294 (393)
...+.++|+.|...+..++..+..+...+-.+..+ +++. .+.++. +.+++.++..++.++..++.|+
T Consensus 129 --~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eL 206 (251)
T 2fic_A 129 --VDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEEL 206 (251)
T ss_dssp --HHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14599999999999999998888877654443322 2221 122332 3789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
..|...+...|...+..|+..|..||.+++..|....+.|.
T Consensus 207 p~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~ 247 (251)
T 2fic_A 207 PSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 247 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988774
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-09 Score=91.48 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=66.5
Q ss_pred eEEEeeCCccccccccccc-cchhhhhccc-cceEecCCCCcccccC-----------------------CccccccCC-
Q psy17920 23 LSISHFNLEQETESCSRFI-HGLDSAVKSL-VAVVADQTKKCQTLYK-----------------------REYQKIGRY- 76 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~-~~~~~~~~~~-~~~v~rry~df~~l~~-----------------------P~K~~~g~~- 76 (393)
..|.|.+++|+......|+ +.+....++. ...|.|||+||..||. |.|.+.|+.
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~ 88 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVG 88 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeecccc
Confidence 3577777888664333333 2222211222 2379999999999887 566666653
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
+.+++++||.+|+.||+.+...| .++.|+.++.||+..
T Consensus 89 ~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 127 (149)
T 2l73_A 89 RTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 57899999999999999999877 599999999999986
|
| >2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-08 Score=97.94 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcccc-ceEecCCCCcccccC----------------------Ccccccc
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSLV-AVVADQTKKCQTLYK----------------------REYQKIG 74 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~-~~v~rry~df~~l~~----------------------P~K~~~g 74 (393)
+.+..+.|+|.++++.+.....+++.+....+... ..|.|||+||..||. |+|.+.|
T Consensus 19 ~~~~~~~v~I~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~~ 98 (341)
T 2dyb_A 19 PDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVG 98 (341)
T ss_dssp CTTSEEEEEEEEEEEEESSSEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCCS
T ss_pred CCCCcEEEEECCeEEecCCCcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccccC
Confidence 45566899999998875422222222221111222 479999999999996 6777777
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 75 RYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 75 ~~~~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
+ ..+|+++|+..|+.||+++..+|. ++.|+.+..|++..
T Consensus 99 ~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 99 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 6 678999999999999999999995 89999999999876
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A | Back alignment and structure |
|---|
Probab=98.12 E-value=9.9e-07 Score=77.00 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=49.4
Q ss_pred ceEecCCCCcccccC------Cc----------------------cccccCCChHHHHHHHHHHHHHHHHHhcCC-Cccc
Q psy17920 53 AVVADQTKKCQTLYK------RE----------------------YQKIGRYEEQFIEHRKNQLQSFVDYVCRHP-VLCR 103 (393)
Q Consensus 53 ~~v~rry~df~~l~~------P~----------------------K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~ 103 (393)
..|.|||+||.+||. |. |.+. .+++|+|+||.+|+.||+.|+..| .++.
T Consensus 47 ~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~~--~~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~ 124 (156)
T 2v6v_A 47 RQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPY--VTNSITKKRKEDLNIYVADLVNLPDYISR 124 (156)
T ss_dssp EEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCSS--CCHHHHHHHHHHHHHHHHHHHTSCHHHHT
T ss_pred EEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCccc--CCHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 369999999998887 32 2222 268899999999999999999855 7999
Q ss_pred ccccccccccc
Q psy17920 104 SPVWQHFITCT 114 (393)
Q Consensus 104 ~~~~~~FL~~~ 114 (393)
|+.++.||+..
T Consensus 125 s~~v~~Ff~~~ 135 (156)
T 2v6v_A 125 SEMVHSLFVVL 135 (156)
T ss_dssp SHHHHHTTSCC
T ss_pred CHHHHHHhCCC
Confidence 99999999986
|
| >1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0028 Score=59.22 Aligned_cols=133 Identities=11% Similarity=0.163 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHHHHhh-hhccccHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREYEKMT-TENKMEANRL 276 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~erl~-~e~k~~~~~v 276 (393)
.+.+..+|...|.++..|++....+-..=...|.++|..+.. .+. .+...+++.-.+.=+.+... .-.|...+++
T Consensus 107 ~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k---~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEl 183 (256)
T 1zww_A 107 DCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLR---EIQHHLKKLEGRRLDFGYKKKRQGKIPDEEL 183 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHTTTTSCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345889999999999999986655433223457778776542 333 33223322111111221110 1235568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.++..|+..+..+..+|..|-... .++-..|.+|++.|..||.+++.......+.+.
T Consensus 184 e~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~ 241 (256)
T 1zww_A 184 RQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLE 241 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 566688899999999999999999999887776
|
| >2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0023 Score=59.30 Aligned_cols=143 Identities=13% Similarity=0.204 Sum_probs=98.9
Q ss_pred HHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HHH
Q psy17920 188 YKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EYE 263 (393)
Q Consensus 188 ~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~e 263 (393)
++..+...|. +.+.++.+|...|.+..+|++....+-..--..|.++|..+.. .-++.+...++. +.+.+ +.+
T Consensus 77 L~~~m~~~~~~l~~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~--~d~k~i~~~rKk-le~~rLd~D 153 (240)
T 2z0v_A 77 LGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQD--KDLKEIGHHLKK-LEGRRLDYD 153 (240)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH--THHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHH
Confidence 3444444343 2456999999999999999987655433223457777776641 223333333332 22222 221
Q ss_pred --HhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 264 --KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 264 --rl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|.. -.+....+++.++..|+.....+..+|..|-..+ .++-..|..|++.|..||++++.......+.+.
T Consensus 154 ~ak~k-~~k~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~ 225 (240)
T 2z0v_A 154 YKKKR-VGKIPDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQSKLQ 225 (240)
T ss_dssp HHHTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1345679999999999999999999999998776 566679999999999999999999999887765
|
| >4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.054 Score=49.93 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred chhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-----hcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 230 PLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-----ENKME--ANRLQEVLKRTDTVSYALLGEINHFH 298 (393)
Q Consensus 230 ~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-----e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~ 298 (393)
.+..+|..|..++..++..+..|...+-.+..+ +++.. +.|+. +.+++.++..++.++..++.|+..|-
T Consensus 112 ~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~ 191 (237)
T 4avm_A 112 QAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILY 191 (237)
T ss_dssp CCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999888877655444322 23311 11222 36788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 299 ~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.-+..=|-..+..++..|..||..+...+.....-|.
T Consensus 192 ~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~ 228 (237)
T 4avm_A 192 NSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 228 (237)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999888776444
|
| >2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.045 Score=51.02 Aligned_cols=175 Identities=11% Similarity=0.178 Sum_probs=102.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
+..++.+..++++|....+.+......+..- ...|...+..++. +...+..+|...|.....++........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a-~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~ 105 (265)
T 2q12_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLST 105 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333221 2235555555553 1223678888999888888765433322
Q ss_pred ccccchhHHHHHHH-hHHhhhhhHHHH-------HHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYK-GIITSMPDILGL-------HKDILNKKREYEKMTTENK---MEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~-~ll~s~~~v~~~-------~~~al~k~re~erl~~e~k---~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
+-...+.++|..+. +-+..+++.=.. +..++.|+-.+.+-+...+ ....++..+++.|+..+-....-|
T Consensus 106 ~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l 185 (265)
T 2q12_A 106 QLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCAL 185 (265)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234666666654 334444432221 2334455444433211101 123667777888888887777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
+..+..+..++-+.|..|+..|..||+++...+.
T Consensus 186 ~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 219 (265)
T 2q12_A 186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999988763
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=1.8e-05 Score=66.03 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=43.6
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhc-CCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~-HPvL~~~~~~~~FL~~ 113 (393)
.|.|||++|.-||+ |+|.+.|+ +..=++ ||++|+.||..|+. -|.++.|+.++.||..
T Consensus 54 ~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 54 LTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp EEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHHH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred EEEEEHHHHHHHHHHHHHhCccccCCCCCCccccCc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 46666666666555 56666663 333455 99999999999998 7999999999999863
|
| >2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.045 Score=53.88 Aligned_cols=175 Identities=11% Similarity=0.175 Sum_probs=97.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
+..++.++.++++|-...+.+......+... ...|...+..++. +...+..+|...|+.+..++........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a-~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~ 105 (385)
T 2q13_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLST 105 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333332211 1234555555543 1223667899999988888765544322
Q ss_pred ccccchhHHHHHHHh-HHhhhhhHHHHHH-------HHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKG-IITSMPDILGLHK-------DILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~-ll~s~~~v~~~~~-------~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
+-...+.++|..+.. -+..+++.-.... .++.|+-.+.+-....+. ...++..+++.++..+-....-|
T Consensus 106 ~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~~~ldy~~~l 185 (385)
T 2q13_A 106 QLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCAL 185 (385)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335566665542 3444433222222 223332222111100000 01456677778888877666679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
+..+..+..++-+.|..|+..|..||+++...|.
T Consensus 186 ~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~ 219 (385)
T 2q13_A 186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874
|
| >4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.69 Score=45.60 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
.++..+++.+...+-.....|+.++..+..++-..|..|+..|..|++.+...|..
T Consensus 188 ~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~ 243 (407)
T 4h8s_A 188 KEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSK 243 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777667777888999999999999999999999999999876543
|
| >1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=1.8 Score=39.40 Aligned_cols=167 Identities=12% Similarity=0.155 Sum_probs=99.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
.+++..++.|. .....-..|.+++..+.+.. ...++.-|..+|.-.+.++.++...|++...++.-
T Consensus 7 ~EL~~klE~l~----~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~---- 78 (224)
T 1i4d_A 7 LELELQIELLR----ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKN---- 78 (224)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHh----
Confidence 34556665554 33333333444443333221 12344445555553456888888888887776631
Q ss_pred ccccccchhHHHHHHHhHHh-----hhhhHHHHHHH----------HHHHHHHHHHhhhhc-------cc--cHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIIT-----SMPDILGLHKD----------ILNKKREYEKMTTEN-------KM--EANRLQEV 279 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~~----------al~k~re~erl~~e~-------k~--~~~~ve~~ 279 (393)
-+.+...|+-+..-+. +++|....-+. ++.+++++ ..+. ++ .+..+..+
T Consensus 79 ----g~~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~---~~~~~~~~~l~rve~~q~~~~~a 151 (224)
T 1i4d_A 79 ----GETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEEL---SLGPRDAGTRGRLESAQATFQAH 151 (224)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C------------CHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHh---hcccccccchhhHHHHHHHHHHH
Confidence 1234445554444333 34555443222 22223322 2111 11 13677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
+.+|+.+...+..=|+-....|..+|...|..|......|+.+++.......
T Consensus 152 k~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~ 203 (224)
T 1i4d_A 152 RDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTL 203 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888775554
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.042 Score=46.39 Aligned_cols=63 Identities=10% Similarity=-0.072 Sum_probs=45.8
Q ss_pred CCCCCccccccccccCCC-----ceEEEeeCC--c------cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 4 PPGDLNIVELIGLKVMDH-----ILSISHFNL--E------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~~i~v~~p--~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
+++||.|.+...-+-+++ .|.|.|... . .+..+||||..+.+.+...+|++++|++|.+.++.
T Consensus 5 d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~ 80 (138)
T 3iq2_A 5 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVK 80 (138)
T ss_dssp CCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC---
T ss_pred ccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhc
Confidence 567888887776655443 277777643 1 22336999999999999999999999999998874
|
| >2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A | Back alignment and structure |
|---|
Probab=90.38 E-value=10 Score=34.38 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+++..+..-+.+.--+..||..|+..|+..|...+.+|+.-|..||..+
T Consensus 186 ~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~ 235 (251)
T 2fic_A 186 EELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEM 235 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888889999999999999999999999999999999999864
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A | Back alignment and structure |
|---|
Probab=86.30 E-value=0.19 Score=43.58 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=44.8
Q ss_pred CCCCCccccccccccCCCc-eEEEeeC--Cc------cccccccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 4 PPGDLNIVELIGLKVMDHI-LSISHFN--LE------QETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~i~v~~--p~------k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
|...|.|.+..+-+.++.. |.|.+.. |. .+..+||||+.+++.+.. .+|++++|++|++..+
T Consensus 8 ~~~~l~i~V~dp~~~~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~ 80 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF 80 (161)
T ss_dssp CSCSEEEEEEEEEEETTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCC
T ss_pred CCCeEEEEECCCeEecCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccc
Confidence 3445777777766655543 6666643 21 222369999999999998 7899999999999876
|
| >4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.89 E-value=36 Score=33.03 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=15.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17920 362 EINHFHQEQVSQINAAMKSFLTEQINFYQ 390 (393)
Q Consensus 362 e~~~f~~~~~~d~~~~~~~~l~~q~~fy~ 390 (393)
.|+-.+..+-.+|-..|-.|+..|..||+
T Consensus 207 ~l~~lq~rk~~e~le~l~~~~~a~~~~f~ 235 (407)
T 4h8s_A 207 ALNALQYRKQMAMMEPMIGFAHGQINFFK 235 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.61 E-value=0.52 Score=39.78 Aligned_cols=62 Identities=10% Similarity=-0.142 Sum_probs=43.5
Q ss_pred CCCCCCccccccccccCCC-----ceEEEeeCC--c------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 3 VPPGDLNIVELIGLKVMDH-----ILSISHFNL--E------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-----~~~i~v~~p--~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
+|.+.|.|.....-+..++ .|.|.|... . .+..+||||..+++.+... |++++|++|.+.++
T Consensus 6 ~~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~ 80 (146)
T 2csk_A 6 SGSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALK 80 (146)
T ss_dssp CCSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCC
T ss_pred CCCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchh
Confidence 3556677766555554432 477887532 1 2223799999999998865 88999999999987
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.48 E-value=0.6 Score=38.10 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=34.2
Q ss_pred ceEEEeeCC--------ccccccccccccchhhhhcccc--ceEecCCCCccccc
Q psy17920 22 ILSISHFNL--------EQETESCSRFIHGLDSAVKSLV--AVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p--------~k~~~~~s~f~~~~~~~~~~~~--~~v~rry~df~~l~ 66 (393)
.|.|.|... -.+..+||||..+++.+...+| +.++|++|.+.++.
T Consensus 23 ~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~ 77 (128)
T 2i4k_A 23 AYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIG 77 (128)
T ss_dssp CCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSS
T ss_pred EEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccc
Confidence 477777532 1223369999999999999886 47999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 393 | ||||
| d1h6ha_ | 143 | d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo | 8e-05 | |
| d1xtea_ | 116 | d.189.1.1 (A:) Serine/threonine-protein kinase Sgk | 4e-04 | |
| d1kmda_ | 117 | d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces | 0.002 | |
| d1ocsa_ | 132 | d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast | 0.002 | |
| d1kq6a_ | 140 | d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo | 0.003 |
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 8e-05
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 39 RFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFV-DYVCR 97
R H L S ++ + + TL + +++ E R L +++ +
Sbjct: 59 RQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSL 118
Query: 98 HPVLCRSPVWQHFITCTDE 116
+ + F +
Sbjct: 119 PVWVLMDEDVRIFFYQSPY 137
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.7 bits (87), Expect = 4e-04
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFI 111
+ ++ FI+ R+ L F+ + R+P L P + F+
Sbjct: 66 KRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFL 108
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.8 bits (82), Expect = 0.002
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPV---LCRSPVWQHFI 111
+ + + I+ R+ L+ F++ + + + Q F+
Sbjct: 69 QRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFL 111
|
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 75 RYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCTD 115
R+ + IE R+ L +++ V HP+L S V FI
Sbjct: 89 RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 130
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.003
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCTDE 116
++ E+R+ L + + P + R P F +
Sbjct: 77 PKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 122
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| d1ocsa_ | 132 | Sorting nexin grd19 {Baker's yeast (Saccharomyces | 99.64 | |
| d1kmda_ | 117 | Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.4 | |
| d1xtea_ | 116 | Serine/threonine-protein kinase Sgk3, Cisk {Mouse | 99.27 | |
| d1h6ha_ | 143 | p40phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.16 | |
| d1kq6a_ | 140 | p47phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.05 | |
| d1urua_ | 217 | Amphiphysin {Fruit fly (Drosophila melanogaster) [ | 99.04 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 99.01 | |
| d2d4ca1 | 237 | Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2elba1 | 268 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 97.64 | |
| d1y2oa1 | 248 | BAP2/IRSp53 N-terminal domain {Human (Homo sapiens | 97.32 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 96.76 | |
| d1urua_ | 217 | Amphiphysin {Fruit fly (Drosophila melanogaster) [ | 95.16 | |
| d2elba1 | 268 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 82.72 |
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=8e-18 Score=141.76 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCceEEEeeCCccccccccccccchhhhhc-------c---ccc---eEecCCCCcccccC-------------------
Q psy17920 20 DHILSISHFNLEQETESCSRFIHGLDSAVK-------S---LVA---VVADQTKKCQTLYK------------------- 67 (393)
Q Consensus 20 ~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-------~---~~~---~v~rry~df~~l~~------------------- 67 (393)
.+.++|+|+||+++..+.++ +.+.|+. + +++ .|.|||+||.|||+
T Consensus 4 ~~~~~i~V~dP~~~~~~~~~---~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p~~ 80 (132)
T d1ocsa_ 4 ENFLEIEVHNPKTHIPNGMD---SKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHL 80 (132)
T ss_dssp SCCEEEEEEEEEEECCCSTT---SCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCC
T ss_pred CCeEEEEEcCCcEeecCCCC---CccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccCCC
Confidence 45689999999987443222 1222221 2 222 69999999999998
Q ss_pred Cccccc-cCCChHHHHHHHHHHHHHHHHHhcCCCccc-ccccccccccc
Q psy17920 68 REYQKI-GRYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCT 114 (393)
Q Consensus 68 P~K~~~-g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~-~~~~~~FL~~~ 114 (393)
|.|... ++++++||++||++||.||++|+.||.|.. ++.|+.||+.+
T Consensus 81 p~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~~ 129 (132)
T d1ocsa_ 81 PGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 129 (132)
T ss_dssp TTCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCcc
Confidence 455544 588999999999999999999999999975 67899999875
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1e-14 Score=120.06 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC--------------Cccccc-------cCCC
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKI-------GRYE 77 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~-------g~~~ 77 (393)
|...+.|+|+|+...+. |+ .+ -+......|.|||+||.|||+ |+|.+. |+++
T Consensus 2 ~~~~~~i~i~d~~i~~~----~~-~Y--~I~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~~~ 74 (117)
T d1kmda_ 2 MSEKLRIKVDDVKINPK----YV-LY--GVSTPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDD 74 (117)
T ss_dssp CCCCCCCEEEEEEECSS----CE-EE--EEECSSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTC
T ss_pred CCccEEEEeCCCEEecC----EE-EE--EEEECCEEEEehHHHHHHHHHHHHHHCCCCcCCCCCccccccccccccCCCC
Confidence 45678899999987643 21 11 112224579999999999999 888764 5889
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC---cccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHPV---LCRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HPv---L~~~~~~~~FL~~~ 114 (393)
++|||+|+++|+.||+.|+.||. ++.|+.|+.||+.+
T Consensus 75 ~~~ie~R~~~Le~yL~~ll~~p~~~~~~~s~~l~~FL~~s 114 (117)
T d1kmda_ 75 PEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114 (117)
T ss_dssp HHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhhcCCHHHHHHhCCC
Confidence 99999999999999999999996 56799999999875
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.4e-13 Score=112.62 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEeeCCccccccccccccchhhhhcc--ccceEecCCCCcccccC--------------CccccccCCChHHHHHHHHH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKS--LVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQ 87 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~ 87 (393)
.|+|..++...++.+.|+. +...+.. ....|.|||+||.+||+ |.|...++++++|+++||.+
T Consensus 6 ~i~I~~~~~~~~~~k~~~~-Y~I~v~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~~~~~~~~l~~Rr~~ 84 (116)
T d1xtea_ 6 SVSIPSSDEHREKKKRFTV-YKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAG 84 (116)
T ss_dssp EEEEEEEEEEEETTEEEEE-EEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHHHHHHHH
T ss_pred cEEeCCceEeccCCCCEEE-EEEEEEECCcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCCcccccCccCHHHHHHHHHH
Confidence 4666666666554444321 1222221 12369999999999998 44445568999999999999
Q ss_pred HHHHHHHHhcCCCccccccccccccccc
Q psy17920 88 LQSFVDYVCRHPVLCRSPVWQHFITCTD 115 (393)
Q Consensus 88 L~~fl~rv~~HPvL~~~~~~~~FL~~~~ 115 (393)
|+.||++|+.||.|..++.|+.||+.++
T Consensus 85 L~~yL~~l~~~~~l~~~~~~~~FL~~d~ 112 (116)
T d1xtea_ 85 LNEFIQNLVRYPELYNHPDVRAFLQMDS 112 (116)
T ss_dssp HHHHHHHHTTCHHHHTSHHHHHHTTTTC
T ss_pred HHHHHHHHHhCHhhhcChHHHhhcCCCC
Confidence 9999999999999999999999998753
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.6e-12 Score=110.14 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=69.2
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhccc-cceEecCCCCcccccC----------------------Ccccccc
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSL-VAVVADQTKKCQTLYK----------------------REYQKIG 74 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~-~~~v~rry~df~~l~~----------------------P~K~~~g 74 (393)
|.+-.++++|.++++.+...+.+++.......+. ...|.|||+||.|||. |.| ..+
T Consensus 16 p~~~~v~~~i~~~e~~~~~~~y~vY~I~v~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~~~lP~lP~k-~~~ 94 (143)
T d1h6ha_ 16 PDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAK-VYV 94 (143)
T ss_dssp CTTCEEEEEEEEEEEECSSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCC-CCS
T ss_pred CCCceEEEEEeceeEecCCCCeEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHCchhhccccccccccCCCcc-ccC
Confidence 3344688999999886532222222222212221 2479999999999998 233 334
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 75 RYEEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 75 ~~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
.++.+||++||.+|+.||+.|..+| .|+.|+.|+.||+.+
T Consensus 95 ~~~~~~ie~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 135 (143)
T d1h6ha_ 95 GVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhCCC
Confidence 5689999999999999999987755 799999999999976
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1e-11 Score=104.69 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=67.2
Q ss_pred EEEeeCCccccccccccccchhhhhccc-cceEecCCCCcccccC--------------Cccccc-------cCCChHHH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKSL-VAVVADQTKKCQTLYK--------------REYQKI-------GRYEEQFI 81 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~~-~~~v~rry~df~~l~~--------------P~K~~~-------g~~~~~Fi 81 (393)
.|+|.+.++...+.+.+++.+....++. ...|.|||+||.|||. |.|... +..+.+|+
T Consensus 7 ~i~i~~~e~~~~~~k~~vY~I~v~~~d~~~~~V~RRYsdF~~Lh~~L~~~fp~~~~~~~p~k~~~~~~~~~~~~~~~~~i 86 (140)
T d1kq6a_ 7 HIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAA 86 (140)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCSHHHH
T ss_pred EEEEeeeEEecCCCCeEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHHCCcccCCCCchhhccccccccccCCCHHHH
Confidence 5788888775543333333333222222 3579999999999999 344332 34589999
Q ss_pred HHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
+.||.+|+.||+.|..+| .++.|+.++.||+..
T Consensus 87 e~R~~~Le~yL~~Ll~~p~~l~~s~~v~~Fl~~~ 120 (140)
T d1kq6a_ 87 ENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVR 120 (140)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCChhhhCCHHHHHHhCCC
Confidence 999999999999999987 599999999999976
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=1.9e-08 Score=89.02 Aligned_cols=177 Identities=8% Similarity=0.070 Sum_probs=125.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHHHHHh
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGIDR----SHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d~----s~L~~al~~lg~~~~~i~~~~~ 221 (393)
.|.+++.....++.++..++.|.+.+..+.... ...++..+..++... +.+......++..+....
T Consensus 10 ~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 85 (217)
T d1urua_ 10 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFA---- 85 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHH----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH----
Confidence 477888888888888888888877776665422 123444455555421 123333333333333333
Q ss_pred cCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-------hhccc--cHHHHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-------TENKM--EANRLQEVLKRTDTVSY 288 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-------~e~k~--~~~~ve~~~~~~e~is~ 288 (393)
......+.++|..|...+..++..+..+..+...+..+ +++. ...++ ...+++.++..++.++.
T Consensus 86 ---~~~~~~v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~~~~l~~~e~~~~~a~~~fe~~~~ 162 (217)
T d1urua_ 86 ---HKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNT 162 (217)
T ss_dssp ---HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 22334699999999999999999998887765444432 2221 11122 24889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 289 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 289 ~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.+..||.+|...|..+|...|..|+..|..||+.+...|....+.+.
T Consensus 163 ~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~ 209 (217)
T d1urua_ 163 ELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD 209 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877665
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.5e-08 Score=86.07 Aligned_cols=176 Identities=9% Similarity=0.083 Sum_probs=116.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKK------CQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKL 226 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk------~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~ 226 (393)
|..++.....+..++..+..|.+.+..+... ....++..+..+|...+.++.++..+|.+...++.........
T Consensus 5 D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 84 (200)
T d1i4da_ 5 DLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGA 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433321 2234566666666655667888888888888877655444333
Q ss_pred cccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHh-------hhhcccc--HHHHHHHHHHHHHHHHHHHHH
Q psy17920 227 DWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKM-------TTENKME--ANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 227 d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl-------~~e~k~~--~~~ve~~~~~~e~is~~v~~E 293 (393)
....+.+++..|...+..+++.+..+..+...+... +++ ...+++. +.+++.++..++.++..+..+
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~ 164 (200)
T d1i4da_ 85 VNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIK 164 (200)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777766655543332222 111 1112232 378899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
|++|+..|..+|...|..|+..|..||+.++..+.
T Consensus 165 l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le 199 (200)
T d1i4da_ 165 LKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998763
|
| >d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Endophilin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.0011 Score=58.26 Aligned_cols=134 Identities=12% Similarity=0.180 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHH-HHHhh-hhccccHHHHH
Q psy17920 201 HLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKRE-YEKMT-TENKMEANRLQ 277 (393)
Q Consensus 201 ~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re-~erl~-~e~k~~~~~ve 277 (393)
.+..+|...|++...|+.........-...+.++|..+.. .+..++.........+...+. .++.. ...+...++++
T Consensus 99 ~~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~d~~~~~~~~~~~rk~~d~~~~~~~~~~~k~~~~~~e~l~ 178 (237)
T d2d4ca1 99 NFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELR 178 (237)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4778888888888888776544433223457777777654 222222222222222222221 11111 12344568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 278 EVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 278 ~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.++..++..+..+..+|..+...+ .+|...|..|+..|..||++++..+....+.|.
T Consensus 179 ~a~~~~e~~~~~~~~~l~~l~~~~-~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 235 (237)
T d2d4ca1 179 QALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLE 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999997655 678889999999999999999999988887765
|
| >d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: DCC-interacting protein 13-alpha, APPL1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.011 Score=52.68 Aligned_cols=175 Identities=11% Similarity=0.170 Sum_probs=102.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQP 224 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~ 224 (393)
.+..++.++.++++|-...+.+......+... ...|...+..++. +.+.+..+|...|+.+..++..+....
T Consensus 21 ~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~-~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l~ 99 (268)
T d2elba1 21 FEEDATAISNYMNQLYQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLS 99 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443321 1223333444443 123377899999999888887554433
Q ss_pred cccccchhHHHHHHH-hHHhhhhhHHHHH-------HHHHHHHHHHHHhhhhcc-c--cHHHHHHHHHHHHHHHHHHHHH
Q psy17920 225 KLDWEPLGDVLHIYK-GIITSMPDILGLH-------KDILNKKREYEKMTTENK-M--EANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 225 ~~d~~~l~e~L~ey~-~ll~s~~~v~~~~-------~~al~k~re~erl~~e~k-~--~~~~ve~~~~~~e~is~~v~~E 293 (393)
..-...+.++|..+. ..+..+++.-... ..++.++....+-+..+. . ...++..+++.++..+-.....
T Consensus 100 ~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~~~~~k~k~~~~~~~Ea~~~l~~~r~~f~~~~~d~~~~ 179 (268)
T d2elba1 100 TQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCA 179 (268)
T ss_dssp HHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666654 2344444332222 223333322111110111 0 1255777788899998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNK 327 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~ 327 (393)
++.++..|..++-..+..|+..|..|||++....
T Consensus 180 l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l 213 (268)
T d2elba1 180 LNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL 213 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887653
|
| >d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: IMD domain domain: BAP2/IRSp53 N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.045 Score=48.13 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=83.3
Q ss_pred HHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHH-----
Q psy17920 187 LYKREYQKIGI------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKD----- 254 (393)
Q Consensus 187 ~~~~~~~~lg~------d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~----- 254 (393)
.|...++++|. +...++.+|..+|..+..++.....-...-...|..+|..+.. .+..+++.-..+.+
T Consensus 51 ~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~ 130 (248)
T d1y2oa1 51 GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSK 130 (248)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666654 1345999999999999998875544333323345555555432 22333332222211
Q ss_pred --HHHHHHH-HHHhh--hhcccc-H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 255 --ILNKKRE-YEKMT--TENKME-A----------NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 318 (393)
Q Consensus 255 --al~k~re-~erl~--~e~k~~-~----------~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~ 318 (393)
.+.|... ++++. ..++.. . +..+..+..++.+...+..+..-..+.|...|.+.+..|+..++.
T Consensus 131 ~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~~~~a~~~ 210 (248)
T d1y2oa1 131 GDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAA 210 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122111 11110 011111 0 122333444455555566666666777777778999999999999
Q ss_pred HhHHHHHhHHHHHHhhh
Q psy17920 319 FYQKDILNKKREYEKMT 335 (393)
Q Consensus 319 ~~qk~a~~~~~~~~~l~ 335 (393)
||++++.......+.+.
T Consensus 211 ~~~q~~~~l~~~~~~~~ 227 (248)
T d1y2oa1 211 YHSKGKELLAQKLPLWQ 227 (248)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 99999987777766543
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.11 Score=43.09 Aligned_cols=51 Identities=4% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++.++.+-+.++.-+..+|+.|+..|+.+|...+..|+..|..||++.
T Consensus 144 e~~~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~ 194 (200)
T d1i4da_ 144 QATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 194 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999999999999999999999864
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.16 E-value=0.71 Score=38.40 Aligned_cols=51 Identities=10% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++.++..-+.++--+..||+.|...|+.+|...+..|+..|..||+++
T Consensus 147 e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~ 197 (217)
T d1urua_ 147 REQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNET 197 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999999999999999999999999999999999999864
|
| >d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: DCC-interacting protein 13-alpha, APPL1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.72 E-value=13 Score=31.55 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=26.8
Q ss_pred HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17920 345 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQ 390 (393)
Q Consensus 345 ~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~ 390 (393)
+...++.-.-.+.=+...|+-++..|..+|...|-.|+..|..||+
T Consensus 162 l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~ 207 (268)
T d2elba1 162 VYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFK 207 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555556666666666666666666666666665
|