Psyllid ID: psy17934

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
MTPEQLTQYTSPPPTLPSTEGSGDSPSSLSNGDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN
ccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEcccccHHHccHHHHHHHHccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHcccHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEcccccEEEccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEEccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccc
ccHHHcccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHcccEEEHccccccccHHHHHHcccccccccccccHHHHccHHHHHHHcHHHHHHHHHHHHccccccccccccccccEEEEcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHcccHHHHcEEEEEEcccccccccHHHHHHHHHHHHHHccHHHccEEEcccccEEEEcccccccHHHHEEHHHHHHHHHHccEEEEccccHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHcccccHHHHEEEEEEEEEEccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHEcccc
mtpeqltqytsppptlpstegsgdspsslsngdldtelTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRcgssllstdsLINVFLVIFeipslggcdyveRALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTIsnhyhkdyilqdeetitlPTKIMRILFYANIlagdldppclrdetqdpednhesmfgvdissskssvqaNHYEDSLAKLLQInvldsrkplipflefyneplsdaiemdrdfgyyraseeltsetdcasssrflkfSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSvvgqptnpylrlkvRRDHIIEDALVELEMIAMENEKDLKKQLVVEFegeqgideggvSKEFFQLIIEEifnpdygmfcvqsdtQHMWFnqmsfesdaQFTLVGIILGLAIYnniildvnFPMVVYKKLmgkrgsfydledfnpvLFNGLRDLLDYEGQDMEDVFSQTFricftdpfgafishdlkpdgdniavTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGfqmvtdesplsllfrpeeieqlvcgsn
mtpeqltqytsppptlpstegsgdspsslsngdLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRAseeltsetdcassSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLqsvvgqptnpylrlkvrrDHIIEDALVELEMIAMENEKDLKKQLVVEFEgeqgideggvSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTdesplsllfrpeeieqlvcgsn
MTPEQLTQYTSPPPTLPSTEGSGDSPSSLSNGDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN
*************************************LTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDP**********************************EDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRP***********
**************************************TLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAG*******************************SVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEE***********RFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRIS*********TNPYLRLKVRRDHIIEDALVELEMIAM***KDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGS*
******************************NGDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRAS*********ASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN
**********************************DTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETD*****RFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN
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MTPEQLTQYTSPPPTLPSTEGSGDSPSSLSNGDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query584 2.2.26 [Sep-21-2011]
Q05086 875 Ubiquitin-protein ligase yes N/A 0.909 0.606 0.503 1e-153
O08759 885 Ubiquitin-protein ligase yes N/A 0.938 0.619 0.484 1e-147
Q5U5R9 776 Probable E3 ubiquitin-pro no N/A 0.535 0.403 0.410 2e-61
Q5RD78 776 Probable E3 ubiquitin-pro no N/A 0.535 0.403 0.410 3e-61
Q8CDU6 774 Probable E3 ubiquitin-pro no N/A 0.535 0.404 0.413 6e-60
Q757T0 839 Probable E3 ubiquitin-pro yes N/A 0.595 0.414 0.353 2e-51
Q6PAV2 1057 Probable E3 ubiquitin-pro no N/A 0.594 0.328 0.342 1e-48
Q5PQN1 1057 Probable E3 ubiquitin-pro no N/A 0.594 0.328 0.342 3e-48
O94275 807 Probable E3 ubiquitin-pro yes N/A 0.479 0.346 0.380 6e-48
Q15034 1050 Probable E3 ubiquitin-pro no N/A 0.477 0.265 0.374 3e-46
>sp|Q05086|UBE3A_HUMAN Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4 Back     alignment and function desciption
 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/548 (50%), Positives = 378/548 (68%), Gaps = 17/548 (3%)

Query: 37  ELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQLRCGSSLLSTDSLINVFL 96
           ++++DI ++RR Y +L  L + + E   + ALV LS  +   L   +      + +N+F+
Sbjct: 231 DVSVDIDAIRRVYTRL--LSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFI 288

Query: 97  VIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLIT 156
           ++ E  +L   +Y+E ALP  CKA S+LPL AQ ++ R+W+ +   +++ ++E  QQLIT
Sbjct: 289 IVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRRMMETFQQLIT 348

Query: 157 IKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLDPPCLRDETQDPEDNHESMF 216
            K ISN ++   ++ D++ I   +K +++++YAN++ G++D     ++ ++P      + 
Sbjct: 349 YKVISNEFNSRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELT 408

Query: 217 GVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYR 276
             ++   +   +     D L   L +  LD RKPLIPF EF NEPL++ +EMD+D+ +++
Sbjct: 409 LQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVLEMDKDYTFFK 468

Query: 277 ASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVV- 335
              E              KFSFM   FIL   TK LGLYYD+RIRMYS RRI+ L S+V 
Sbjct: 469 VETEN-------------KFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQ 515

Query: 336 GQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFF 395
           GQ  NPYLRLKVRRDHII+DALV LEMIAMEN  DLKKQL VEFEGEQG+DEGGVSKEFF
Sbjct: 516 GQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFF 575

Query: 396 QLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPM 455
           QL++EEIFNPD GMF     T+  WFN  SFE++ QFTL+GI+LGLAIYNN ILDV+FPM
Sbjct: 576 QLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPM 635

Query: 456 VVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISH 515
           VVY+KLMGK+G+F DL D +PVL+  L+DLL+YEG ++ED    TF+I  TD FG  + +
Sbjct: 636 VVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMY 694

Query: 516 DLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEE 575
           DLK +GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL  LFRPEE
Sbjct: 695 DLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEE 754

Query: 576 IEQLVCGS 583
           IE L+CGS
Sbjct: 755 IELLICGS 762
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. Several substrates have been identified including the RAD23A and RAD23B, MCM7 (which is involved in DNA replication), annexin A1, the PML tumor suppressor, and the cell cycle regulator CDKN1B. Additionally, may function as a cellular quality control ubiquitin ligase by helping the degradation of the cytoplasmic misfolded proteins. Finally, UBE3A also promotes its own degradation in vivo.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O08759|UBE3A_MOUSE Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1 Back     alignment and function description
>sp|Q5U5R9|HECD2_HUMAN Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2 Back     alignment and function description
>sp|Q5RD78|HECD2_PONAB Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1 Back     alignment and function description
>sp|Q8CDU6|HECD2_MOUSE Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=2 Back     alignment and function description
>sp|Q757T0|HUL4_ASHGO Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HUL4 PE=3 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|O94275|MUG30_SCHPO Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug30 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
307168941 866 Ubiquitin-protein ligase E3A [Camponotus 0.926 0.624 0.611 0.0
345487340 862 PREDICTED: ubiquitin-protein ligase E3A- 0.895 0.606 0.629 0.0
307193358 840 Ubiquitin-protein ligase E3A [Harpegnath 0.924 0.642 0.615 0.0
322798652 850 hypothetical protein SINV_12404 [Solenop 0.924 0.635 0.608 0.0
242024187 931 ubiquitin-protein ligase E3A, putative [ 0.943 0.591 0.612 0.0
380011286 863 PREDICTED: ubiquitin-protein ligase E3A 0.919 0.622 0.608 0.0
350398844 863 PREDICTED: ubiquitin-protein ligase E3A- 0.921 0.623 0.611 0.0
332019071 877 Ubiquitin-protein ligase E3A [Acromyrmex 0.926 0.616 0.6 0.0
328776205 863 PREDICTED: ubiquitin-protein ligase E3A 0.919 0.622 0.607 0.0
340714742 863 PREDICTED: ubiquitin-protein ligase E3A- 0.922 0.624 0.609 0.0
>gi|307168941|gb|EFN61827.1| Ubiquitin-protein ligase E3A [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/569 (61%), Positives = 439/569 (77%), Gaps = 28/569 (4%)

Query: 20  EGSGDSPSSLSNGDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVTLSEYINVQL 79
           E S D   ++ N D   + ++D+ SVRRA+E L++LP   FE  LV ALVTL++ I + L
Sbjct: 210 EDSSDPSPTVPNND---DTSVDLPSVRRAFEALWSLPGEVFESALVNALVTLADDIELDL 266

Query: 80  RCGSSLL--STDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWA 137
           R    +   S DSL+NVFL++FEIP LG  +Y+E AL  +CKA S LP+ AQA++AR+WA
Sbjct: 267 RVFRIVRWDSMDSLLNVFLIVFEIPMLGNSEYLELALHMLCKALSCLPIVAQAKLARVWA 326

Query: 138 AHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYANILAGDLD 197
            HCK RL  +L+ALQ+LIT+K I   + +DY +QD +TIT PTK+M+IL+YA++LAG+LD
Sbjct: 327 KHCKSRLPNLLQALQELITVKVIGGSFTRDYCVQDADTITAPTKVMKILYYASMLAGELD 386

Query: 198 PP--CLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFL 255
           PP   L DE +            D ++S+S++     +D+LA  L IN LD+RKP IPF 
Sbjct: 387 PPEMILGDEAESASS--------DKTTSRSAISGQIPQDALAIELGINALDARKPFIPFT 438

Query: 256 EFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLY 315
           +FYNEPLSDAIEMD+DF YY++ E +             KFSFM Y+F+LTPATKTLGLY
Sbjct: 439 DFYNEPLSDAIEMDKDFAYYKSEEPM-------------KFSFMNYAFVLTPATKTLGLY 485

Query: 316 YDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQL 375
           YD+RIRMYS RR+S+LQ+VVGQPTNPYLRLKVRRDH+I+DALVELEM+AMEN  DLKKQL
Sbjct: 486 YDNRIRMYSERRMSFLQTVVGQPTNPYLRLKVRRDHLIDDALVELEMVAMENPSDLKKQL 545

Query: 376 VVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLV 435
           VVEFEGEQG+DEGGVSKEFFQL++EEIFNPDYGMF  Q DTQ  WFN  SFESDAQFTL+
Sbjct: 546 VVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDYGMFTTQEDTQMTWFNPTSFESDAQFTLI 605

Query: 436 GIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMED 495
           GI+LGLAIYNN+ILDV FPMVVY+KL+G++G+F DLED++P L+  +++L++Y G DM +
Sbjct: 606 GIVLGLAIYNNVILDVRFPMVVYRKLLGRKGAFADLEDWSPTLYRTMKELMEYTGDDMPE 665

Query: 496 VFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFR 555
            F QTFR+ + D FG+   H+LK +GD + VTQENK+EF DLY+DFLLN S+E+QF AFR
Sbjct: 666 TFMQTFRVGYRDVFGSLSFHELKENGDELYVTQENKKEFADLYADFLLNKSVERQFNAFR 725

Query: 556 RGFQMVTDESPLSLLFRPEEIEQLVCGSN 584
           RGFQMVTDESPL+LLFRPEEIEQLVCGS 
Sbjct: 726 RGFQMVTDESPLALLFRPEEIEQLVCGSK 754

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345487340|ref|XP_003425675.1| PREDICTED: ubiquitin-protein ligase E3A-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307193358|gb|EFN76220.1| Ubiquitin-protein ligase E3A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322798652|gb|EFZ20256.1| hypothetical protein SINV_12404 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242024187|ref|XP_002432511.1| ubiquitin-protein ligase E3A, putative [Pediculus humanus corporis] gi|212517949|gb|EEB19773.1| ubiquitin-protein ligase E3A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380011286|ref|XP_003689740.1| PREDICTED: ubiquitin-protein ligase E3A [Apis florea] Back     alignment and taxonomy information
>gi|350398844|ref|XP_003485321.1| PREDICTED: ubiquitin-protein ligase E3A-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332019071|gb|EGI59603.1| Ubiquitin-protein ligase E3A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328776205|ref|XP_394656.4| PREDICTED: ubiquitin-protein ligase E3A [Apis mellifera] Back     alignment and taxonomy information
>gi|340714742|ref|XP_003395884.1| PREDICTED: ubiquitin-protein ligase E3A-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
UNIPROTKB|Q6NVK6 856 ube3a "Ubiquitin protein ligas 0.938 0.640 0.505 2.5e-145
UNIPROTKB|F1NER6 883 UBE3A "Uncharacterized protein 0.909 0.601 0.514 5.1e-145
ZFIN|ZDB-GENE-041114-190 857 ube3a "ubiquitin protein ligas 0.948 0.646 0.498 5.3e-143
UNIPROTKB|F1PBV3 870 UBE3A "Uncharacterized protein 0.940 0.631 0.496 6.8e-143
UNIPROTKB|A4IFN7 875 UBE3A "Uncharacterized protein 0.940 0.627 0.494 2.3e-142
RGD|1306361 904 Ube3a "ubiquitin protein ligas 0.941 0.608 0.495 6.1e-142
UNIPROTKB|Q05086 875 UBE3A "Ubiquitin-protein ligas 0.909 0.606 0.505 9.9e-142
UNIPROTKB|F1SNS1 853 UBE3A "Uncharacterized protein 0.909 0.622 0.505 2.1e-141
FB|FBgn0061469 973 Ube3a "Ubiquitin protein ligas 0.912 0.547 0.494 3.6e-137
MGI|MGI:105098 885 Ube3a "ubiquitin protein ligas 0.940 0.620 0.488 1.5e-136
UNIPROTKB|Q6NVK6 ube3a "Ubiquitin protein ligase E3A (Human papilloma virus E6-associated protein, Angelman syndrome)" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 290/574 (50%), Positives = 392/574 (68%)

Query:    20 EGSGDSPSSLSN---GDLDT------ELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVT 70
             E SG S S LS+   GD +       E++LDI++VRR Y +L  L + + E   + ALV 
Sbjct:   186 EDSGASSSRLSDNSQGDNNIQKLGPEEVSLDIEAVRRVYHRL--LSNEKIETAFLNALVY 243

Query:    71 LSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQA 130
             LS  +   L   +      + +N+F+++ E  +L   +Y+E ALP  CKA S+LPL AQA
Sbjct:   244 LSPNVECDLTYHNVYSRDPNYLNLFIIVMENGNLHSPEYLEMALPLFCKAMSKLPLAAQA 303

Query:   131 RIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYAN 190
             ++ R+W+ +  ++++ ++E  QQLIT K ISN ++   ++ D++ I   TK +++++Y+N
Sbjct:   304 KLIRLWSKYSAEQIRRMMETFQQLITYKVISNEFNSRNLVNDDDAIVAATKCLKMVYYSN 363

Query:   191 ILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKP 250
             ++ G+++     +E  +P      +   ++   +   +     D L   L +  +D RKP
Sbjct:   364 VVGGEIETDHNEEEDDEPVPESSELTLQELLGEERRNKKGPRVDPLETELGVKSIDCRKP 423

Query:   251 LIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATK 310
             LIPF EF NEPL+D +EMD+D+ +++       ET+        KFSFM   FIL   TK
Sbjct:   424 LIPFEEFVNEPLNDVLEMDKDYTFFKV------ETEN-------KFSFMTCPFILNAVTK 470

Query:   311 TLGLYYDSRIRMYSGRRISYLQSVV-GQPTNPYLRLKVRRDHIIEDALVELEMIAMENEK 369
              LGLYYD+RIRMYS RRI+ L S+V GQ  NPYLRLKVRRDHII+DALV LEMIAMEN  
Sbjct:   471 NLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPA 530

Query:   370 DLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFESD 429
             DLKKQL VEFEGEQG+DEGGVSKEFFQL++EEIFNPD GMF     T+H WFN  SFE++
Sbjct:   531 DLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKHSWFNPSSFETE 590

Query:   430 AQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYE 489
              QFTL+GI+LGLAIYNN ILDV+FPMVVY+KLMGK+G+F DL D +PVL+  L++LL+YE
Sbjct:   591 GQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLADSHPVLYQSLKELLEYE 650

Query:   490 GQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEK 549
             G   ED+   TF+I  TD FG  + HDLK +GD I +T EN++EF+ LY+D++LN S+EK
Sbjct:   651 GNVEEDMM-MTFQISQTDLFGNPLMHDLKENGDKIPITNENRKEFVSLYTDYILNKSVEK 709

Query:   550 QFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGS 583
             QFKAFRRGF MVT+ESPL  LFRPEEIE L+CGS
Sbjct:   710 QFKAFRRGFHMVTNESPLKYLFRPEEIELLICGS 743
GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA
GO:0005634 "nucleus" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
GO:0030521 "androgen receptor signaling pathway" evidence=IBA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
UNIPROTKB|F1NER6 UBE3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-190 ube3a "ubiquitin protein ligase E3A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBV3 UBE3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFN7 UBE3A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306361 Ube3a "ubiquitin protein ligase E3A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q05086 UBE3A "Ubiquitin-protein ligase E3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNS1 UBE3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0061469 Ube3a "Ubiquitin protein ligase E3A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:105098 Ube3a "ubiquitin protein ligase E3A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q05086UBE3A_HUMAN6, ., 3, ., 2, ., -0.50360.90920.6068yesN/A
O08759UBE3A_MOUSE6, ., 3, ., 2, ., -0.48420.93830.6192yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
cd00078 352 cd00078, HECTc, HECT domain; C-terminal catalytic 2e-95
smart00119 328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-69
COG5021 872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-57
pfam00632 298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-54
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  295 bits (757), Expect = 2e-95
 Identities = 114/245 (46%), Positives = 154/245 (62%), Gaps = 10/245 (4%)

Query: 343 LRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEI 402
           L++ VRRD I+EDAL +L  ++     DLKK L VEF GE+GID GGV++EFF L+ +E+
Sbjct: 1   LKITVRRDRILEDALRQLSKVSS---SDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKEL 57

Query: 403 FNPDYGMFCVQSDTQH-MWFNQMSFESD---AQFTLVGIILGLAIYNNIILDVNFPMVVY 458
           FNP YG+F    D    ++ N  SF  +     F  +G +LG A+Y   +LD+ F    Y
Sbjct: 58  FNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFY 117

Query: 459 KKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLK 518
           KKL+GK  S  DLE+ +P L+  L++LLD +G   ED    TF I     FG  ++ +LK
Sbjct: 118 KKLLGKPLSLEDLEELDPELYKSLKELLDNDGD--EDDLELTFTIELDSSFGGAVTVELK 175

Query: 519 PDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQ 578
           P G +I VT ENK+E++DLY D+ LN  IE+Q +AFR GF  V  E  LS LF PEE+E 
Sbjct: 176 PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLS-LFTPEELEL 234

Query: 579 LVCGS 583
           L+CGS
Sbjct: 235 LICGS 239

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 584
KOG0941|consensus 850 100.0
COG5021 872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078 352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG0942|consensus 1001 100.0
smart00119 336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG4427|consensus 1096 100.0
KOG0939|consensus 720 100.0
KOG0170|consensus 621 100.0
PF00632 317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940|consensus 358 99.96
KOG0943|consensus 3015 99.81
KOG0941|consensus850 94.97
>KOG0941|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.4e-98  Score=818.15  Aligned_cols=468  Identities=41%  Similarity=0.666  Sum_probs=425.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-HHHHHHHhhhcCCCCCCCcccchhhhhhccCcCCCCCcch
Q psy17934         32 GDLDTELTLDIKSVRRAYEQLFALPSSEFEHTLVQALVT-LSEYINVQLRCGSSLLSTDSLINVFLVIFEIPSLGGCDYV  110 (584)
Q Consensus        32 ~~~~~~~~VDl~~ar~~f~~L~~~~~~~i~~~i~~al~~-Ll~~L~~~l~~~~~~~~~~e~LriflIL~E~P~~~~~~~~  110 (584)
                      .+....+++|++.|+.+|..|......++.+.|..++.. |...+.    .   +++++|++++++++|++|.++.++++
T Consensus       267 ~c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~~~~L~~~~s----~---~~~d~e~~~i~l~l~~~~~~~~s~~~  339 (850)
T KOG0941|consen  267 FCSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAIQKRLIRLWS----K---YPADQEALYILLLLPLIPLNVLSNEY  339 (850)
T ss_pred             ccceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh----h---CCcHHHHHHHHHHcccchHHHHHHHH
Confidence            378889999999999999999655667788778777764 776662    3   57899999999999999999999999


Q ss_pred             hhhHHHHHHHHhcCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccCCCCccccccCcccchhhhHHHHHHHHHh
Q psy17934        111 ERALPKICKAASQLPLTAQARIARIWAAHCKQRLKTILEALQQLITIKTISNHYHKDYILQDEETITLPTKIMRILFYAN  190 (584)
Q Consensus       111 ~~l~~~f~~ai~~L~~~~~~~L~~wWs~l~~~~f~rlV~~~kq~It~~l~~~~~~~~~~~~~d~~i~~a~k~l~~l~~an  190 (584)
                      .+...||+++++.+......+++.||+.+++.+|+++|++++.+|+..+....    .....++.|.++.+         
T Consensus       340 ~s~~vp~~~~i~~~~~~~~~~l~~~~~~~~~k~~~~~v~~f~~~V~~~l~~~~----~~~~e~~~i~~~l~---------  406 (850)
T KOG0941|consen  340 NSLNVPFADAICIVAENKRLKLVEYWNQLSPKYFRKLVSMFKEAVTEILKFSK----ELAEENKGIRSALK---------  406 (850)
T ss_pred             HhccCcHHHHHHHhhcchHHHHHHHHHHhchhhcchhhhchhhHHHHhhhccc----hhhhhccchhhHHH---------
Confidence            99999999999999999999999999999999999999999999999874321    11222444444443         


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCcccccccccccccccccccchHHHHHHHHhcccccCCCCCCCCCcccccccccccchhh
Q psy17934        191 ILAGDLDPPCLRDETQDPEDNHESMFGVDISSSKSSVQANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDR  270 (584)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~n~~~~~~~~ip~~~F~~~~l~~~~~~~~  270 (584)
                                                                  .++++|.+|   |+.+.||++.||++++++.+|+++
T Consensus       407 --------------------------------------------~~~lly~vN---~~~~lip~e~FY~~~l~~~id~~~  439 (850)
T KOG0941|consen  407 --------------------------------------------LLELLYKVN---CRKGLIPYEEFYNEELNDRIDMKE  439 (850)
T ss_pred             --------------------------------------------HHHHHHHHh---ccCCCCCHHHhhhHHHHhHHHHHH
Confidence                                                        455566666   467889999999999999999999


Q ss_pred             HHhhhhhhhcccccccccccccccccceeccccccchhHHHHHhhHhHHHHHHHHHHHHHHHHhhCCC---CCCceEEEe
Q psy17934        271 DFGYYRASEELTSETDCASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQP---TNPYLRLKV  347 (584)
Q Consensus       271 d~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~Pfll~~~~K~~~l~~d~~~~~~~~~~~~~~~s~~~~~---~~p~l~l~V  347 (584)
                      ||..|+..             ....|+||+|||||+..+|+.+|++|++++|..+++.+++.++....   ++|++.|+|
T Consensus       440 dy~~w~~~-------------~~~~fsfc~ypFIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~~~~~p~l~l~V  506 (850)
T KOG0941|consen  440 DYVHWRTK-------------QMNCFSFCNYPFILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQLLVSPYLKLTV  506 (850)
T ss_pred             HHHHHHHH-------------hcccceeecCCeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcEEEEE
Confidence            99999952             22389999999999999999999999999999999999999887332   589999999


Q ss_pred             cCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCcccccCCchh
Q psy17934        348 RRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFE  427 (584)
Q Consensus       348 rR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~~~~fnp~s~~  427 (584)
                      ||++|++|++++|+   +.+..|+||+|+|+|.||+|+|+|||+||||.++++||++|+||||+++++++.+||++.+++
T Consensus       507 rR~~lv~Dsl~~l~---~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~~~WF~~~~~~  583 (850)
T KOG0941|consen  507 RRDHLVEDALRQLS---MISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESSLLWFNPSPFE  583 (850)
T ss_pred             ehhhhHHHHHHHHH---hhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccceeeecCCCCC
Confidence            99999999999994   456679999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcccccccceEEEeeC
Q psy17934        428 SDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTD  507 (584)
Q Consensus       428 ~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee~~~l~F~~~~~d  507 (584)
                      ...+|++||++||+||||.+++|+|||+++|||||+.+++++||.++.|.+|+||+.||+|+|+|+||+|+++|++++ +
T Consensus       584 ~~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f~l~F~i~~-~  662 (850)
T KOG0941|consen  584 EEKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVFDLTFQISQ-D  662 (850)
T ss_pred             ccceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhheeeEEEEEe-h
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999997 6


Q ss_pred             CCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHHHHhhccccCC
Q psy17934        508 PFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN  584 (584)
Q Consensus       508 ~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~li~G~~  584 (584)
                      .+|..++++|+|||.+|+||++||+|||++||+|.+|++|++||+||++||++||+++.+. +|+|+||+.+|||+.
T Consensus       663 ~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~-lf~peEl~~li~G~~  738 (850)
T KOG0941|consen  663 DNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLR-LFQPEELEKLICGSE  738 (850)
T ss_pred             hcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhh-hcCHHHHHHHHhCCC
Confidence            7889999999999999999999999999999999999999999999999999999998886 999999999999984

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
1c4z_A 358 Structure Of E6ap: Insights Into Ubiquitination Pat 1e-97
3olm_A 429 Structure And Function Of A Ubiquitin Binding Site 6e-32
1zvd_A 380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 1e-31
3g1n_A 388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-29
3h1d_A 405 Structure Of The Huwe1 Hect Domain Length = 405 3e-29
3tug_A 398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 1e-28
3jw0_C 385 E2~ubiquitin-Hect Length = 385 7e-28
3jvz_C 385 E2~ubiquitin-Hect Length = 385 7e-28
2oni_A 392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 4e-26
2xbb_A 386 Nedd4 Hect:ub Complex Length = 386 5e-26
1nd7_A 374 Conformational Flexibility Underlies Ubiquitin Liga 7e-26
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (908), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 1/244 (0%)
Query: 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLII 399
           NPYLRLKVRRDHII+DALV LEMIAMEN  DLKKQL VEFEGEQG+DEGGVSKEFFQL++
Sbjct: 3   NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVV 62
Query: 400 EEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
           EEIFNPD GMF     T+  WFN  SFE++ QFTL+GI+LGLAIYNN ILDV+FPMVVY+
Sbjct: 63  EEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR 122
Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
           KLMGK+G+F DL D +PVL+  L+DLL+YEG ++ED    TF+I  TD FG  + +DLK 
Sbjct: 123 KLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMYDLKE 181
Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
           +GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL  LFRPEEIE L
Sbjct: 182 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 241
Query: 580 VCGS 583
           +CGS
Sbjct: 242 ICGS 245
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
1c4z_A 358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-126
2oni_A 392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-108
3h1d_A 405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-106
1zvd_A 380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-106
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-102
1nd7_A 374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
 Score =  374 bits (963), Expect = e-126
 Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 1/244 (0%)

Query: 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLII 399
           NPYLRLKVRRDHII+DALV LEMIAMEN  DLKKQL VEFEGEQG+DEGGVSKEFFQL++
Sbjct: 3   NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVV 62

Query: 400 EEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
           EEIFNPD GMF     T+  WFN  SFE++ QFTL+GI+LGLAIYNN ILDV+FPMVVY+
Sbjct: 63  EEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR 122

Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
           KLMGK+G+F DL D +PVL+  L+DLL+YEG ++ED    TF+I  TD FG  + +DLK 
Sbjct: 123 KLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMYDLKE 181

Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
           +GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL  LFRPEEIE L
Sbjct: 182 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 241

Query: 580 VCGS 583
           +CGS
Sbjct: 242 ICGS 245
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
1c4z_A 358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3h1d_A 405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1nd7_A 374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
1zvd_A 380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
2oni_A 392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
Probab=100.00  E-value=5.3e-61  Score=507.17  Aligned_cols=245  Identities=69%  Similarity=1.149  Sum_probs=234.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCc
Q psy17934        339 TNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQH  418 (584)
Q Consensus       339 ~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~~  418 (584)
                      .+|+++|+|||+||++||+++++.++..++.++|++|+|+|.||+|+|+|||+||||+++++|+++|++|||+++++++.
T Consensus         2 ~~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~~   81 (358)
T 1c4z_A            2 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKL   81 (358)
T ss_dssp             -CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTE
T ss_pred             CCCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCCe
Confidence            36899999999999999999998767778899999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcccccc
Q psy17934        419 MWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFS  498 (584)
Q Consensus       419 ~~fnp~s~~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee~~~  498 (584)
                      +||||.+.++..+|+++|+++|+|||+|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++ |++++++
T Consensus        82 ~~~np~s~~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~-d~~~~l~  160 (358)
T 1c4z_A           82 FWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMM  160 (358)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCS-CHHHHTC
T ss_pred             EeeCCccccchHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCC-chhhhcc
Confidence            999999988888999999999999999999999999999999999999999999999999999999999987 8888899


Q ss_pred             cceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHHHHhh
Q psy17934        499 QTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQ  578 (584)
Q Consensus       499 l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~  578 (584)
                      ++|++++.|.+|...++||+|||++++||.+||+|||++|++|+++++|++|++||++||++|||.++|..+|+|+||+.
T Consensus       161 ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~  240 (358)
T 1c4z_A          161 ITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIEL  240 (358)
T ss_dssp             CBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHH
T ss_pred             ceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHH
Confidence            99999877899999999999999999999999999999999999999999999999999999999888855899999999


Q ss_pred             ccccCC
Q psy17934        579 LVCGSN  584 (584)
Q Consensus       579 li~G~~  584 (584)
                      +|||++
T Consensus       241 li~G~~  246 (358)
T 1c4z_A          241 LICGSR  246 (358)
T ss_dssp             HHHCBC
T ss_pred             Hhhccc
Confidence            999974
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 584
d1c4za_ 350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 9e-80
d1nd7a_ 374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-62
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  253 bits (646), Expect = 9e-80
 Identities = 170/245 (69%), Positives = 203/245 (82%), Gaps = 1/245 (0%)

Query: 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLII 399
           NPYLRLKVRRDHII+DALV LEMIAMEN  DLKKQL VEFEGEQG+DEGGVSKEFFQL++
Sbjct: 1   NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVV 60

Query: 400 EEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
           EEIFNPD GMF     T+  WFN  SFE++ QFTL+GI+LGLAIYNN ILDV+FPMVVY+
Sbjct: 61  EEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR 120

Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
           KLMGK+G+F DL D +PVL+  L+DLL+YEG ++ED    TF+I  TD FG  + +DLK 
Sbjct: 121 KLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMYDLKE 179

Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
           +GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL  LFRPEEIE L
Sbjct: 180 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 239

Query: 580 VCGSN 584
           +CGS 
Sbjct: 240 ICGSR 244
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
d1c4za_ 350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1nd7a_ 374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-53  Score=446.77  Aligned_cols=244  Identities=70%  Similarity=1.155  Sum_probs=232.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCcc
Q psy17934        340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHM  419 (584)
Q Consensus       340 ~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~~~  419 (584)
                      +|+++|+|||+||++|+++++..+...+..++|++|+|+|.||+|+|+|||+||||+++++|+++|++|||..++.++.+
T Consensus         1 ~p~l~i~v~R~~i~~d~~~~~~~~~~~~~~~l~~~~~V~F~gE~g~D~GG~~rE~~~~l~~el~~p~~~lf~~~~~~~~~   80 (350)
T d1c4za_           1 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLF   80 (350)
T ss_dssp             CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTEE
T ss_pred             CCcEEEEEccCcHHHHHHHHHHHhhhcChHhcCccEEEEecCCcccCCCcCHHHHHHHHHHHHcCCccCCccccCCCccc
Confidence            58999999999999999999987777778899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCccccccc
Q psy17934        420 WFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQ  499 (584)
Q Consensus       420 ~fnp~s~~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee~~~l  499 (584)
                      |++|.+..+..+|+++|+++|+||+++.+++++||++|||+|+|.+++++||.++||++++++++|+++++ +.++++++
T Consensus        81 ~~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~Dl~~~D~~~~~sl~~l~~~~~-~~~~~~~l  159 (350)
T d1c4za_          81 WFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMI  159 (350)
T ss_dssp             EECTTCCSCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCS-CHHHHTCC
T ss_pred             cCCccchhhhhHHHHHHHHHHHHHHCCCCcCccCCHHHHHHHcCCCCcccchhhhCHHHHHHHHHHHHcCC-chHhhcce
Confidence            99999888889999999999999999999999999999999999999999999999999999999999887 45557999


Q ss_pred             ceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHHHHhhc
Q psy17934        500 TFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL  579 (584)
Q Consensus       500 ~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~l  579 (584)
                      +|+++..+..|...++||+|||++++||.+|+++||+++++|+++++++.|++||++||++|+|.+.|..+|+|+||+.+
T Consensus       160 ~f~~~~~~~~g~~~~~eL~p~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~l  239 (350)
T d1c4za_         160 TFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL  239 (350)
T ss_dssp             BSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHH
T ss_pred             eEEEecccCCCCeEEEEccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHHHh
Confidence            99999888899999999999999999999999999999999999999999999999999999999888668999999999


Q ss_pred             cccCC
Q psy17934        580 VCGSN  584 (584)
Q Consensus       580 i~G~~  584 (584)
                      +||++
T Consensus       240 i~G~~  244 (350)
T d1c4za_         240 ICGSR  244 (350)
T ss_dssp             HHCBC
T ss_pred             hCCCC
Confidence            99974
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure