Psyllid ID: psy17993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MGDETTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
cccccccEEEEEEEccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEcEEEEEEcccccEEEEEcccccEEEcccccccEEEccccEEEcccccEEEEccccEEEEEEcccccEEEEEEEccccEEEEccccccccccccccccccEEEEEccccccccEEEccccEEEEEEEEc
cccccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccEEEHHHHHHHEEcccccEEEEEcccccHHHHHcccccEEEEcccEEEEcccccEEEEccccEEEEEccccccEEEEEEcccccEEEEccHHHHHHccccccccccEEEEEEcccccccEEEcccccEEEEEEEc
mgdettatldafcifpyldifcifpyfARFRLTYRLILREKELHFNigvynpsndlaFNFNLLLHTylkvpdvrrcqvnglygchYIDKvldnqlfretretvsVSSLTDRIYQNTCQEHVVTNVVsgrkmrlqkynfpdtviwnpwdtgrdmkdfgddeypnmicveaghvtspvllhpgttfeasqilq
MGDETTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSvssltdriyqntcqehvvtnvvsgrkmrlqkynfpdtviwnpwdtGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
MGDETTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
******ATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGT*********
*****TATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
MGDETTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
****TTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGDETTATLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
Q03161297 Glucose-6-phosphate 1-epi yes N/A 0.769 0.494 0.364 1e-19
Q40784329 Putative glucose-6-phosph N/A N/A 0.890 0.516 0.300 8e-19
P39173294 Putative glucose-6-phosph N/A N/A 0.602 0.391 0.307 4e-06
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 43  LHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRET 102
           L   I V N S+     FN L HTY ++ D+    V+ L G    D++L  + + +    
Sbjct: 137 LKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPV 195

Query: 103 VSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDTVIWNPW-DTGRDMKDFGDDE 160
           V+ +  TD IYQN   E  +  V  G ++  L++YN PDTV+WNPW +  + M DF    
Sbjct: 196 VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKT 255

Query: 161 -YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
            Y  MIC+E GHV   + L PG  + A Q+L
Sbjct: 256 GYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
Catalyzes the interconversion between the alpha and beta anomers from at least three hexose 6-phosphate sugars (Glc6P, Gal6P, and Man6P).
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function description
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
195164700 297 GL21096 [Drosophila persimilis] gi|19410 0.952 0.612 0.706 3e-71
125984974 297 GA21473 [Drosophila pseudoobscura pseudo 0.952 0.612 0.706 3e-71
195436630 297 GK18199 [Drosophila willistoni] gi|19416 0.952 0.612 0.701 4e-71
195338265 297 GM15127 [Drosophila sechellia] gi|195579 0.952 0.612 0.706 1e-70
19921284 297 CG9008, isoform A [Drosophila melanogast 0.952 0.612 0.706 1e-70
28574481191 CG9008, isoform B [Drosophila melanogast 0.853 0.853 0.762 1e-70
194765743 297 GF21693 [Drosophila ananassae] gi|190617 0.952 0.612 0.701 2e-70
194860455 297 GG10186 [Drosophila erecta] gi|190661454 0.952 0.612 0.701 3e-70
328793292278 PREDICTED: glucose-6-phosphate 1-epimera 0.848 0.582 0.754 5e-70
340720454278 PREDICTED: glucose-6-phosphate 1-epimera 0.848 0.582 0.754 5e-70
>gi|195164700|ref|XP_002023184.1| GL21096 [Drosophila persimilis] gi|194105269|gb|EDW27312.1| GL21096 [Drosophila persimilis] Back     alignment and taxonomy information
 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 154/184 (83%), Gaps = 2/184 (1%)

Query: 10  DAFCIFPYLD-IFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYL 68
           D   IF  +D  F    +  +FR+TYRLILREKELHF+IGVYNPS +L+F+FN+LLHTYL
Sbjct: 99  DVEAIFSLMDNEFTRSIWNYQFRITYRLILREKELHFHIGVYNPSKELSFSFNMLLHTYL 158

Query: 69  KVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSG 128
           KVPDVRRCQ+ GL+GCH+IDK  +N L++E RE V+V+  TDRIYQ+T QEHV+TNVVSG
Sbjct: 159 KVPDVRRCQITGLHGCHFIDKTRENALYQEGREVVTVNEWTDRIYQHTPQEHVITNVVSG 218

Query: 129 RKMRLQKYNFPDTVIWNPW-DTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEAS 187
           RKMRL KYNFPDTVIWNPW D  R+M DFGDDE+PNM+CVEAG+VTSPV+L PGT FEAS
Sbjct: 219 RKMRLHKYNFPDTVIWNPWIDRSREMSDFGDDEFPNMLCVEAGNVTSPVILLPGTAFEAS 278

Query: 188 QILQ 191
           QILQ
Sbjct: 279 QILQ 282

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|125984974|ref|XP_001356251.1| GA21473 [Drosophila pseudoobscura pseudoobscura] gi|54644573|gb|EAL33314.1| GA21473 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195436630|ref|XP_002066260.1| GK18199 [Drosophila willistoni] gi|194162345|gb|EDW77246.1| GK18199 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195338265|ref|XP_002035745.1| GM15127 [Drosophila sechellia] gi|195579046|ref|XP_002079373.1| GD22046 [Drosophila simulans] gi|194129625|gb|EDW51668.1| GM15127 [Drosophila sechellia] gi|194191382|gb|EDX04958.1| GD22046 [Drosophila simulans] Back     alignment and taxonomy information
>gi|19921284|ref|NP_609670.1| CG9008, isoform A [Drosophila melanogaster] gi|195472689|ref|XP_002088632.1| GE11470 [Drosophila yakuba] gi|7298086|gb|AAF53325.1| CG9008, isoform A [Drosophila melanogaster] gi|16648158|gb|AAL25344.1| GH14910p [Drosophila melanogaster] gi|194174733|gb|EDW88344.1| GE11470 [Drosophila yakuba] gi|220945202|gb|ACL85144.1| CG9008-PA [synthetic construct] gi|220955096|gb|ACL90091.1| CG9008-PA [synthetic construct] Back     alignment and taxonomy information
>gi|28574481|ref|NP_723835.2| CG9008, isoform B [Drosophila melanogaster] gi|28380351|gb|AAN10845.2| CG9008, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194765743|ref|XP_001964986.1| GF21693 [Drosophila ananassae] gi|190617596|gb|EDV33120.1| GF21693 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|194860455|ref|XP_001969587.1| GG10186 [Drosophila erecta] gi|190661454|gb|EDV58646.1| GG10186 [Drosophila erecta] Back     alignment and taxonomy information
>gi|328793292|ref|XP_003251860.1| PREDICTED: glucose-6-phosphate 1-epimerase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340720454|ref|XP_003398652.1| PREDICTED: glucose-6-phosphate 1-epimerase-like [Bombus terrestris] gi|350410100|ref|XP_003488945.1| PREDICTED: glucose-6-phosphate 1-epimerase-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
FB|FBgn0028540297 CG9008 [Drosophila melanogaste 0.952 0.612 0.706 3.5e-68
DICTYBASE|DDB_G0277669328 DDB_G0277669 "aldose 1-epimera 0.816 0.475 0.352 1.3e-22
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.842 0.526 0.323 3.9e-21
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.863 0.520 0.327 4.9e-21
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.858 0.525 0.331 4.9e-21
SGD|S000004705297 YMR099C "Glucose-6-phosphate 1 0.748 0.481 0.367 1.3e-20
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.863 0.539 0.295 9.2e-20
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.832 0.504 0.347 1.5e-19
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.837 0.522 0.314 5.1e-19
CGD|CAL0002587299 orf19.1946 [Candida albicans ( 0.821 0.525 0.320 7.7e-16
FB|FBgn0028540 CG9008 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 130/184 (70%), Positives = 152/184 (82%)

Query:    10 DAFCIFPYLDI-FCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYL 68
             D   IF  +D  F    +  +FR+TYRLILREKELHF+IGVYNPS +L+F FN+LLHTYL
Sbjct:    99 DVEAIFSLMDNDFTRSIWNYQFRITYRLILREKELHFHIGVYNPSKELSFTFNMLLHTYL 158

Query:    69 KVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSG 128
             KVPDVRRCQ+ GL GCH+IDK  +N L++E RE V+V+  TDRIYQ+T QEHV+TNVVSG
Sbjct:   159 KVPDVRRCQITGLQGCHFIDKTRENALYQEGREVVTVNEWTDRIYQHTPQEHVITNVVSG 218

Query:   129 RKMRLQKYNFPDTVIWNPW-DTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEAS 187
             RKMRL KYNFPDTVIWNPW D  R+M DFGDDE+PNM+CVEAG+VTSPV+L PGT FEAS
Sbjct:   219 RKMRLHKYNFPDTVIWNPWIDRSREMSDFGDDEFPNMLCVEAGNVTSPVILLPGTAFEAS 278

Query:   188 QILQ 191
             QILQ
Sbjct:   279 QILQ 282
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0016853 "isomerase activity" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0007030 "Golgi organization" evidence=IMP
GO:0034389 "lipid particle organization" evidence=IMP
DICTYBASE|DDB_G0277669 DDB_G0277669 "aldose 1-epimerase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000004705 YMR099C "Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0002587 orf19.1946 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!
3rd Layer5.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 5e-55
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 1e-26
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 9e-25
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 6e-04
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score =  175 bits (445), Expect = 5e-55
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 23  IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
           I+P+   F L   + L    L   + V N  +   F+F   LHTY +V D+ + +V GL 
Sbjct: 104 IWPH--AFELRLTVTLGFDTLELELTVTNTGDK-PFSFTAALHTYFRVSDIEQVRVEGLE 160

Query: 83  GCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTV 142
           G  Y+DK L +Q  +     V+     DR+Y NT     + +   GR++R++K   P  V
Sbjct: 161 GATYLDK-LTDQREKVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAV 219

Query: 143 IWNPW-DTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ 191
           +WNPW +    M DF DD Y  M+CVEA +V  PV L PG +   SQ + 
Sbjct: 220 VWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
KOG1594|consensus305 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 99.97
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 99.96
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 99.94
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.94
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 99.93
PRK15172300 putative aldose-1-epimerase; Provisional 99.93
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.89
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.87
PLN00194337 aldose 1-epimerase; Provisional 99.84
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.75
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.73
PRK11055342 galM galactose-1-epimerase; Provisional 99.6
PTZ00485376 aldolase 1-epimerase; Provisional 99.44
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.13
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 98.59
KOG1604|consensus353 98.13
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 90.06
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 89.57
TIGR00192101 urease_beta urease, beta subunit. In a number of s 89.43
PRK13203102 ureB urease subunit beta; Reviewed 89.13
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 88.35
PRK13202104 ureB urease subunit beta; Reviewed 87.3
PRK13201136 ureB urease subunit beta; Reviewed 86.61
PRK13205162 ureB urease subunit beta; Reviewed 86.46
PRK13204159 ureB urease subunit beta; Reviewed 85.49
PF14315274 DUF4380: Domain of unknown function (DUF4380) 85.46
PRK13198158 ureB urease subunit beta; Reviewed 85.3
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
Probab=100.00  E-value=4.7e-47  Score=308.59  Aligned_cols=182  Identities=32%  Similarity=0.543  Sum_probs=166.7

Q ss_pred             CCCeEEEEEccCC-CcccCCCcceEEEEEEEEeCCceEEEEEEEeCCCCceeEEeeccceeEEeCCCCceEEeeCCCCee
Q psy17993          8 TLDAFCIFPYLDI-FCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHY   86 (191)
Q Consensus         8 ~~~~~~~~~l~~~-~t~~~yP~~f~l~~~~~L~~~~L~~~l~v~N~~~~~~m~f~~g~HpyF~v~~~~~~~~~gl~~~~~   86 (191)
                      .+.++++|.|.++ ++++.|||+|+++++|+|.+++|+++++|+|+|++ +|||++|+||||++++++++.+.|+.+..|
T Consensus        86 ~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~-~~p~~~g~HpYf~v~d~~~~~v~gl~~~~y  164 (269)
T cd09020          86 EDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDK-PFSFTAALHTYFRVSDIEQVRVEGLEGATY  164 (269)
T ss_pred             CCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCC-CeEehhccCeeEecCCccccEEeCCCCCce
Confidence            3467899999998 99999999999999999999999999999999999 999999999999999999999999999899


Q ss_pred             eeccCCcceeeeecceEEeCCCCCeeEeCCCCeEEEEEeCCCceEEEEEeCCCcEEEeCCcc-CCCCCCCCCCCCCCceE
Q psy17993         87 IDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWD-TGRDMKDFGDDEYPNMI  165 (191)
Q Consensus        87 ~d~~~~~~~~~~~~~~~~~~~~~D~iy~~~~~~~~l~~~~~~~~i~v~~~~~~~~vvWnp~~-~~~~~~d~~~~~~~~fv  165 (191)
                      +|++.+.... ...+.+.+.+++||||.++++.+.|.+...++.|+|++.+++++||||||. +++.|+||++++|++||
T Consensus       165 ~d~~~~~~~~-~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fv  243 (269)
T cd09020         165 LDKLTDQREK-VQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMV  243 (269)
T ss_pred             EEcCCCcccc-ccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEE
Confidence            9987653222 224578899999999998888899999888999999999999999999999 99999999999999999


Q ss_pred             EecceecCCCeEeCCCCEEEEEEEeC
Q psy17993        166 CVEAGHVTSPVLLHPGTTFEASQILQ  191 (191)
Q Consensus       166 CiEP~~~~~~~~L~pGe~~~~~~~i~  191 (191)
                      |||||++.+.+.|+||++|+++++|+
T Consensus       244 CvEp~~~~~~~~L~pG~~~~~~~~i~  269 (269)
T cd09020         244 CVEAANVADPVTLAPGESHTLSQTIS  269 (269)
T ss_pred             EECeeecCCCEEECCCCCEEEEEEEC
Confidence            99999988899999999999999985

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
>KOG1594|consensus Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>KOG1604|consensus Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13204 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>PRK13198 ureB urease subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-20
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 1e-20
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 8e-07
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 2e-04
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 43  LHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRET 102
           L   I V N S+     FN L HTY ++ D+    V+ L G    D++L  + + +    
Sbjct: 137 LKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPV 195
Query: 103 VSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDTVIWNPW-DTGRDMKDFGDDE 160
           V+ +  TD IYQN   E  +  V  G ++  L++YN PDTV+WNPW +  + M DF    
Sbjct: 196 VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKT 255
Query: 161 -YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
            Y  MIC+E GHV   + L PG  + A Q+L
Sbjct: 256 GYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 2e-45
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 3e-43
1jov_A270 HI1317; hypothetical protein, structure 2 function 1e-35
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 2e-24
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 2e-12
3q1n_A294 Galactose mutarotase related enzyme; structural ge 3e-11
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
 Score =  151 bits (381), Expect = 2e-45
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 23  IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
           ++P    + L   + L    L   I V N S+     FN L HTY ++ D+    V+ L 
Sbjct: 119 LWPM--DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLA 176

Query: 83  GCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDT 141
           G    D+ L  + + +    V+ +  TD IYQN   E  +  V  G ++  L++YN PDT
Sbjct: 177 GMKLYDQ-LLKESYVDKHPVVTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDT 235

Query: 142 VIWNPWDT-GRDMKDFGDDE-YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
           V+WNPW    + M DF     Y  MIC+E GHV   + L PG  + A Q+L
Sbjct: 236 VVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 99.97
3q1n_A294 Galactose mutarotase related enzyme; structural ge 99.96
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 99.96
3os7_A341 Galactose mutarotase-like protein; structural geno 99.96
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 99.95
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 99.94
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 99.93
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.9
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.89
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.86
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.77
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.74
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 89.38
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 86.02
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 86.02
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 82.87
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
Probab=100.00  E-value=3e-35  Score=238.29  Aligned_cols=165  Identities=18%  Similarity=0.355  Sum_probs=139.3

Q ss_pred             CCCeEEEEEccCCCcccCCCcceEEEEEEEEeCCceEEEEEEEeCCCCceeEEeeccceeEEeCCCCceEEeeCCCCeee
Q psy17993          8 TLDAFCIFPYLDIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYI   87 (191)
Q Consensus         8 ~~~~~~~~~l~~~~t~~~yP~~f~l~~~~~L~~~~L~~~l~v~N~~~~~~m~f~~g~HpyF~v~~~~~~~~~gl~~~~~~   87 (191)
                      .+.+.++|.|.++      ++.|+|+++|+|.   |+++++|+|+|++   ||++|+||||++++++++++.++.+ .|+
T Consensus       105 ~~~v~l~~~l~~~------~~~f~l~~~~~L~---l~~~~~v~N~g~~---p~~~g~HpyF~v~d~~~~~v~g~~~-~~~  171 (270)
T 1jov_A          105 VHKVRLEFELFSD------LNIIEAKVSMVFT---DKCHLTFTHYGEE---SAQAALHTYFNIGDINQVEVQGLPE-TCF  171 (270)
T ss_dssp             TTEEEEEEEEECT------TSCEEEEEEEEES---SSEEEEEEECCSS---CEEEEECCEEECSCGGGEEEESCCS-EEE
T ss_pred             CCcEEEEEEECCC------ccccEEEEEEEEC---CeEEEEEEeCCch---hHhhhcccceecCCcceEEEECCCC-cce
Confidence            3445788888775      2459999999995   8999999999966   4799999999999999999999944 788


Q ss_pred             eccCCcceeeeecceEEeCCCCCeeEeCCCCeEEEEEeCCCceEEEEEeCCCcEEEeCCccCCCCCCCCCCCCCCceEEe
Q psy17993         88 DKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICV  167 (191)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~D~iy~~~~~~~~l~~~~~~~~i~v~~~~~~~~vvWnp~~~~~~~~d~~~~~~~~fvCi  167 (191)
                      |++.....  ...+.+.+.+++|++|.++++.+.|.+++.++.|+|+.++++++||||||.  +.|+||+++++++||||
T Consensus       172 d~l~~~~~--~~~~~~~~~~~~D~vy~~~~~~~~i~d~~~~~~i~v~~~~~~~~vvWnP~~--~~~~d~~~~~~~~fvCv  247 (270)
T 1jov_A          172 NSLNQQQE--NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWH--KKTSGMSETGYQKMLCL  247 (270)
T ss_dssp             ETTTTEEE--ECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTT--SCCTTCCTTGGGGEEEE
T ss_pred             eccCCccc--ccCCcccCCCCccceeCCCCCCEEEEECCCCcEEEEEEcCCCeEEEECCCc--ccccccccccCccEEEe
Confidence            88765322  223467788889999998878899999888999999999999999999973  56899999999999999


Q ss_pred             cceecCCCeEeCCCCEEEEEEEeC
Q psy17993        168 EAGHVTSPVLLHPGTTFEASQILQ  191 (191)
Q Consensus       168 EP~~~~~~~~L~pGe~~~~~~~i~  191 (191)
                      ||+++  .+.|+|||+++++++|+
T Consensus       248 Ep~~~--~~~L~PGe~~~~~~~i~  269 (270)
T 1jov_A          248 ETARI--HHLLEFGESLSVEISLK  269 (270)
T ss_dssp             EEEEE--EEEECTTCEEEEEEEEC
T ss_pred             Ccccc--ceEECCCCEEEEEEEEE
Confidence            99875  57899999999999985
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 191
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 6e-33
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  116 bits (292), Expect = 6e-33
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 29  RFRLTYRLILREKELHFNIGVYNP---SNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCH 85
            F L   L + E ++            ++    +    LHTY  + D+ + +V GL    
Sbjct: 111 EFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC 170

Query: 86  YIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWN 145
           +      NQ          +S   D IY     ++ + +    R + L  +N    V+WN
Sbjct: 171 FNS---LNQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWN 227

Query: 146 PWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ 191
           PW   +      +  Y  M+C+E   +     L  G +      L+
Sbjct: 228 PWH--KKTSGMSETGYQKMLCLETARIHHL--LEFGESLSVEISLK 269

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.71
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.58
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.54
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.52
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 89.17
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 85.96
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 81.12
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.4e-36  Score=244.05  Aligned_cols=153  Identities=19%  Similarity=0.347  Sum_probs=126.7

Q ss_pred             CCCcceEEEEEEEEeCCceEEEEEEEeCCCCceeEEeeccceeEEeCCCCceEEeeCCCCeeeeccCCcceeeeecceEE
Q psy17993         25 PYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVS  104 (191)
Q Consensus        25 ~yP~~f~l~~~~~L~~~~L~~~l~v~N~~~~~~m~f~~g~HpyF~v~~~~~~~~~gl~~~~~~d~~~~~~~~~~~~~~~~  104 (191)
                      .|||.|+++++|+|+   |  +++|+|++.+ +|||++|+||||+|++.+++.+.|+.+..|.+.. ...  ....+.+.
T Consensus       116 ~~~~~f~~~~~~~lt---l--~~~l~n~~~~-~~pf~~g~HpyF~v~d~~~~~v~gl~~~~~~~~~-~~~--~~~~~~~~  186 (269)
T d1jova_         116 SDLNIIEAKVSMVFT---D--KCHLTFTHYG-EESAQAALHTYFNIGDINQVEVQGLPETCFNSLN-QQQ--ENVPSPRH  186 (269)
T ss_dssp             CTTSCEEEEEEEEES---S--SEEEEEEECC-SSCEEEEECCEEECSCGGGEEEESCCSEEEETTT-TEE--EECCSSBC
T ss_pred             cCCCcceEEEEEEec---c--EEEEEEccCC-CccceecccceEecCCccceEEecCCcccccccc-ccc--cccCCCcc
Confidence            578999999998874   3  4556777778 9999999999999999999999999886665433 221  12234577


Q ss_pred             eCCCCCeeEeCCCCeEEEEEeCCCceEEEEEeCCCcEEEeCCcc-CCCCCCCCCCCCCCceEEecceecCCCeEeCCCCE
Q psy17993        105 VSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWNPWD-TGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTT  183 (191)
Q Consensus       105 ~~~~~D~iy~~~~~~~~l~~~~~~~~i~v~~~~~~~~vvWnp~~-~~~~~~d~~~~~~~~fvCiEP~~~~~~~~L~pGe~  183 (191)
                      +.+++|++|.+.+..+.|.+.+.++.|+|+.+||+++||||||. +++   +|.+++|++||||||+++.  ..|+|||+
T Consensus       187 ~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vVWnP~~~~a~---~~~d~~~~~fvCVEp~~~~--~~L~PGes  261 (269)
T d1jova_         187 ISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTS---GMSETGYQKMLCLETARIH--HLLEFGES  261 (269)
T ss_dssp             CSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTTSCCT---TCCTTGGGGEEEEEEEEEE--EEECTTCE
T ss_pred             cCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEEECCccchhc---cccccCCCCEEEECcccCC--ceECCCCe
Confidence            88899999999888899999889999999999999999999997 665   4555679999999999874  47999999


Q ss_pred             EEEEEEeC
Q psy17993        184 FEASQILQ  191 (191)
Q Consensus       184 ~~~~~~i~  191 (191)
                      |+++++|+
T Consensus       262 ~~~~~~ir  269 (269)
T d1jova_         262 LSVEISLK  269 (269)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999985
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure