Psyllid ID: psy17994

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYVIVPV
ccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHcccccEEccccccccccccccccccccHHHHHHHHHHccccEEEEEEEEEccccccHHccccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccEEEccHHHHHccccccccccEEEccccccccccccccccccccccccccc
EEEEccccHHHHHHHHHHHHHHccccccccccHHcccHHHHccEEEEEEccccccccccHHHHHHHHHHccccccccEcEcccccccccHHHHcHHHEcccHHHHHHHcccEEEEEEEEEcccHHHHcccccEcccccccHHHHHHcccHcccccccHHHHHHHcccHHHccEEEEEcHHHHcEcccEccccccccccccccHHHHHHHHHHHcccccEEEEcHHHHHcccccccccEEEEcccccccccccccccccccccHEHEcc
mflgdgmslptITAARIYKgqlgergpdeprgeqdhlsfenfpftgmaktycvdqqtadsaCTATAYLCgvknnfgtigvnskisrkncegmknpeyFTTSILKWAQdfgkstgvvtttrvthaspagtyahtaerdwecdadikkdperigngckDIAYQLvkddpgrrikvimgggrakflpvsskddegnvgersdgqDLIKEWLLDKTNRTKKAKFITTRQQLleldpnkgtdyllGMNLFFFLSwashspsgstcqvyvivpv
mflgdgmslptITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTrvthaspagtyahtaerdwecdadikkdperigngckdiayqlvkddpgrRIKVImgggrakflpvsskddegnvgersdgqdlikewlldktnrtkkakfittrqqlleldpNKGTDYLLGMNLFFFLSWAShspsgstcqVYVIVPV
MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYVIVPV
***************RI********************SFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFL*******************LIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYVIV**
MFLGDGMSLPTITAARIYKGQLGERG**EPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSS*********RSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLS**************V*V**
MFLGDGMSLPTITAARIYKGQLGE**********DHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSS***********DGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYVIVPV
MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYV*VPV
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MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGMNLFFFLSWASHSPSGSTCQVYVIVPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
P29523 550 Membrane-bound alkaline p N/A N/A 0.876 0.427 0.512 1e-62
P05186 524 Alkaline phosphatase, tis yes N/A 0.854 0.437 0.502 1e-56
P09242 524 Alkaline phosphatase, tis yes N/A 0.854 0.437 0.489 9e-56
P08289 524 Alkaline phosphatase, tis yes N/A 0.854 0.437 0.489 1e-55
Q29486 524 Alkaline phosphatase, tis N/A N/A 0.854 0.437 0.489 2e-55
Q92058 519 Alkaline phosphatase, tis yes N/A 0.854 0.441 0.473 8e-55
P09487 524 Alkaline phosphatase, tis yes N/A 0.854 0.437 0.481 2e-54
P83456 477 Alkaline phosphatase OS=G N/A N/A 0.850 0.477 0.485 2e-54
P15693 540 Intestinal-type alkaline no N/A 0.839 0.416 0.451 8e-51
P24822 559 Intestinal-type alkaline no N/A 0.839 0.402 0.439 1e-50
>sp|P29523|PPB_BOMMO Membrane-bound alkaline phosphatase OS=Bombyx mori GN=Alp-m PE=1 SV=3 Back     alignment and function desciption
 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/242 (51%), Positives = 162/242 (66%), Gaps = 7/242 (2%)

Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
           MFLGDGMS+PT+ AAR   GQ   RG     GE+  L FE FP  G+AKTYCV+ Q  DS
Sbjct: 79  MFLGDGMSVPTLAAARTLLGQ--RRGQT---GEEASLHFEQFPTLGLAKTYCVNAQVPDS 133

Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           +CTATAYLCGVK N GT GV + + R +CE   +      SI +WA   G+  G+VTTTR
Sbjct: 134 SCTATAYLCGVKANQGTPGVTAAVPRHDCEASTDVTKRVQSIAEWALADGRDVGIVTTTR 193

Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
           +THASPAGT+A  A R+WE D D+K++   + N C DIA+QL+K  PG + KVI GGGR 
Sbjct: 194 ITHASPAGTFAKVANRNWENDNDVKQEGHDV-NRCPDIAHQLIKMAPGNKFKVIFGGGRR 252

Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
           +FLP +  D+EG  G R+DG++LI+EW  DK ++    K++  RQ+LL+L  +   DYLL
Sbjct: 253 EFLPTTQVDEEGTRGLRTDGRNLIEEWQNDKESQKVSYKYLWNRQELLKLGSSP-PDYLL 311

Query: 241 GM 242
           G+
Sbjct: 312 GL 313

Bombyx mori (taxid: 7091)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1
>sp|P05186|PPBT_HUMAN Alkaline phosphatase, tissue-nonspecific isozyme OS=Homo sapiens GN=ALPL PE=1 SV=4 Back     alignment and function description
>sp|P09242|PPBT_MOUSE Alkaline phosphatase, tissue-nonspecific isozyme OS=Mus musculus GN=Alpl PE=1 SV=2 Back     alignment and function description
>sp|P08289|PPBT_RAT Alkaline phosphatase, tissue-nonspecific isozyme OS=Rattus norvegicus GN=Alpl PE=1 SV=2 Back     alignment and function description
>sp|Q29486|PPBT_FELCA Alkaline phosphatase, tissue-nonspecific isozyme OS=Felis catus GN=ALPL PE=1 SV=1 Back     alignment and function description
>sp|Q92058|PPBT_CHICK Alkaline phosphatase, tissue-nonspecific isozyme OS=Gallus gallus GN=ALPL PE=2 SV=1 Back     alignment and function description
>sp|P09487|PPBT_BOVIN Alkaline phosphatase, tissue-nonspecific isozyme OS=Bos taurus GN=ALPL PE=1 SV=2 Back     alignment and function description
>sp|P83456|PPB_GADMO Alkaline phosphatase OS=Gadus morhua PE=1 SV=1 Back     alignment and function description
>sp|P15693|PPBI1_RAT Intestinal-type alkaline phosphatase 1 OS=Rattus norvegicus GN=Alpi PE=1 SV=1 Back     alignment and function description
>sp|P24822|PPBI_MOUSE Intestinal-type alkaline phosphatase OS=Mus musculus GN=Iap PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
223951437 555 alakaline phosphatase 2 [Nilaparvata lug 0.876 0.423 0.533 3e-68
328720217 536 PREDICTED: membrane-bound alkaline phosp 0.861 0.430 0.565 8e-68
242007254 464 membrane-bound alkaline phosphatase prec 0.873 0.504 0.570 1e-67
91089295 529 PREDICTED: similar to alkaline phosphata 0.843 0.427 0.538 6e-67
158285905 571 AGAP007300-PA [Anopheles gambiae str. PE 0.858 0.402 0.530 2e-66
157120638 513 alkaline phosphatase [Aedes aegypti] gi| 0.858 0.448 0.526 1e-65
386277191 544 alkaline phosphatase 1 [Spodoptera litur 0.865 0.426 0.526 2e-65
170030976 531 alkaline phosphatase [Culex quinquefasci 0.869 0.438 0.512 1e-64
359801935 560 alkaline phosphatase 1 [Aphis glycines] 0.858 0.410 0.524 4e-64
328720212 565 PREDICTED: membrane-bound alkaline phosp 0.861 0.408 0.542 8e-64
>gi|223951437|gb|ACN29683.1| alakaline phosphatase 2 [Nilaparvata lugens] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 167/242 (69%), Gaps = 7/242 (2%)

Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
           +FLGDGMS+PT+ AARIY GQL  +      GE   LSFE FPFTG +KTYCVD+Q ADS
Sbjct: 90  LFLGDGMSVPTVAAARIYLGQLEMKA-----GENSRLSFEEFPFTGYSKTYCVDKQVADS 144

Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           ACT+TAY  GVK N+GT+GV + ++R NC    +P    T ++ WAQ  GK+TG+VTT  
Sbjct: 145 ACTSTAYTGGVKANYGTLGVTAAVARGNCTASLDPATHVTGVVTWAQTAGKATGIVTTAS 204

Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
           VT ASPAG Y+H+A+RDW+ D D++K   +  + CKDIA QLV++ PG  +KVI+GGGR 
Sbjct: 205 VTDASPAGAYSHSADRDWQSDKDLRKAGAQ-ADACKDIAQQLVRNKPGSELKVILGGGRK 263

Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
           KFLP + KD  G  GER DG +LI+EWL DK  R   AK+   R  LLE +    +DY++
Sbjct: 264 KFLPETVKDKSGVKGERLDGANLIQEWLDDKKERKATAKYFEDRTGLLESN-TTSSDYIM 322

Query: 241 GM 242
           G+
Sbjct: 323 GL 324

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328720217|ref|XP_001943259.2| PREDICTED: membrane-bound alkaline phosphatase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242007254|ref|XP_002424457.1| membrane-bound alkaline phosphatase precursor, putative [Pediculus humanus corporis] gi|212507857|gb|EEB11719.1| membrane-bound alkaline phosphatase precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91089295|ref|XP_971418.1| PREDICTED: similar to alkaline phosphatase [Tribolium castaneum] gi|270012503|gb|EFA08951.1| hypothetical protein TcasGA2_TC006658 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158285905|ref|XP_308522.4| AGAP007300-PA [Anopheles gambiae str. PEST] gi|157020214|gb|EAA03918.4| AGAP007300-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157120638|ref|XP_001659699.1| alkaline phosphatase [Aedes aegypti] gi|108874864|gb|EAT39089.1| AAEL009077-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|386277191|gb|AFJ04289.1| alkaline phosphatase 1 [Spodoptera litura] Back     alignment and taxonomy information
>gi|170030976|ref|XP_001843363.1| alkaline phosphatase [Culex quinquefasciatus] gi|167868843|gb|EDS32226.1| alkaline phosphatase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|359801935|gb|AEV66505.1| alkaline phosphatase 1 [Aphis glycines] Back     alignment and taxonomy information
>gi|328720212|ref|XP_001943482.2| PREDICTED: membrane-bound alkaline phosphatase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
FB|FBgn0037083 523 CG5656 [Drosophila melanogaste 0.861 0.441 0.506 1.4e-57
FB|FBgn0034712 533 CG3264 [Drosophila melanogaste 0.824 0.414 0.510 1.4e-55
FB|FBgn0033423 515 CG1809 [Drosophila melanogaste 0.843 0.438 0.502 1.8e-55
FB|FBgn0034711 538 CG3290 [Drosophila melanogaste 0.824 0.410 0.497 9.9e-55
FB|FBgn0043791 546 CG8147 [Drosophila melanogaste 0.839 0.412 0.471 5.5e-54
UNIPROTKB|P05186 524 ALPL "Alkaline phosphatase, ti 0.854 0.437 0.502 1.9e-53
MGI|MGI:87983 524 Alpl "alkaline phosphatase, li 0.854 0.437 0.489 2.1e-52
RGD|2100 524 Alpl "alkaline phosphatase, li 0.854 0.437 0.489 2.1e-52
FB|FBgn0038845 522 CG10827 [Drosophila melanogast 0.824 0.423 0.5 3.5e-52
UNIPROTKB|F1NN44333 ALPL "Alkaline phosphatase" [G 0.854 0.687 0.473 3.5e-52
FB|FBgn0037083 CG5656 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 122/241 (50%), Positives = 163/241 (67%)

Query:     2 FLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSA 61
             FLGDGMS+PT+TA RI+ GQL  RG     GE++ L FE F + G++KTYCV++Q ADSA
Sbjct:    70 FLGDGMSVPTVTAGRIFDGQL--RGVV---GERNRLEFEKFNYVGLSKTYCVNKQVADSA 124

Query:    62 CTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRV 121
             CTA+AYL G+K N+ TIGV + +   +C G + P+   +SI  WA    KS G+VTTTRV
Sbjct:   125 CTASAYLSGIKANYLTIGVTADVELNDCRGSRLPQNRLSSIAAWALKGSKSAGLVTTTRV 184

Query:   122 THASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAK 181
             THASPAG YAHT+ RD+E D D+ K  +  GN C DIA QL+  D G+R++V+MGGG  K
Sbjct:   185 THASPAGVYAHTSNRDFESDYDVTKLGQNPGN-CPDIAQQLIDGDVGKRLRVVMGGGTIK 243

Query:   182 FLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLG 241
             FLP ++ D  GN G+R D ++LI+EW   K      A+ + +R  LL  D  + TD+LLG
Sbjct:   244 FLPNTTNDVFGNKGQRLDNRNLIEEWQQTKPGN---ARVVFSRTDLLNNDA-QNTDFLLG 299

Query:   242 M 242
             +
Sbjct:   300 L 300
GO:0004035 "alkaline phosphatase activity" evidence=ISS
GO:0008152 "metabolic process" evidence=IEA
FB|FBgn0034712 CG3264 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033423 CG1809 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034711 CG3290 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0043791 CG8147 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P05186 ALPL "Alkaline phosphatase, tissue-nonspecific isozyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:87983 Alpl "alkaline phosphatase, liver/bone/kidney" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2100 Alpl "alkaline phosphatase, liver/bone/kidney" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0038845 CG10827 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NN44 ALPL "Alkaline phosphatase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P05186PPBT_HUMAN3, ., 1, ., 3, ., 10.50200.85440.4370yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!
3rd Layer3.1.3.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
cd00016 384 cd00016, alkPPc, Alkaline phosphatase homologues; 2e-86
smart00098 419 smart00098, alkPPc, Alkaline phosphatase homologue 6e-82
pfam00245 421 pfam00245, Alk_phosphatase, Alkaline phosphatase 1e-76
COG1785 482 COG1785, PhoA, Alkaline phosphatase [Inorganic ion 1e-40
PRK10518 476 PRK10518, PRK10518, alkaline phosphatase; Provisio 4e-13
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH Back     alignment and domain information 
 Score =  262 bits (671), Expect = 2e-86
 Identities = 111/245 (45%), Positives = 148/245 (60%), Gaps = 43/245 (17%)

Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
           +F+GDGM + TITAARIYKGQ  E G +E +     L F++FP TG++KTY VD Q  DS
Sbjct: 11  LFIGDGMGVSTITAARIYKGQ--ENGAEEGK-----LLFDDFPLTGLSKTYSVDSQVTDS 63

Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           A TATAY  GVK N G IGV++    ++      P    TS+L+WA+  GK+TG+VTTTR
Sbjct: 64  AATATAYATGVKTNNGAIGVSAD-VSRDDTDNGKPV---TSVLEWAKAAGKATGIVTTTR 119

Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
           VTHA+PA  YAH  +R+WE                +DIA QL+++ PGR I V++GGGR 
Sbjct: 120 VTHATPAAFYAHVPDRNWE----------------EDIAEQLIEEAPGRGIDVLLGGGRR 163

Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
            FLP ++       G R DG+DLI EW      + K  +++  R +LL ++    TD LL
Sbjct: 164 YFLPSTTG------GGRKDGRDLIAEW------KAKGYQYVWNRTELLAVNVA--TDKLL 209

Query: 241 GMNLF 245
           G  LF
Sbjct: 210 G--LF 212

Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity. Length = 384
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues Back     alignment and domain information
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase Back     alignment and domain information
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG4126|consensus 529 100.0
smart00098 419 alkPPc Alkaline phosphatase homologues. 100.0
PF00245 421 Alk_phosphatase: Alkaline phosphatase; InterPro: I 100.0
PRK10518 476 alkaline phosphatase; Provisional 100.0
cd00016 384 alkPPc Alkaline phosphatase homologues; alkaline p 100.0
COG1785 482 PhoA Alkaline phosphatase [Inorganic ion transport 100.0
>KOG4126|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-74  Score=558.09  Aligned_cols=242  Identities=52%  Similarity=0.916  Sum_probs=227.9

Q ss_pred             CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994          1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV   80 (268)
Q Consensus         1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv   80 (268)
                      ||||||||+++|+|||+++++.+       .|++.+|.||+|||+|++||||+|++|||||++||||+||+|+++++|||
T Consensus        77 lFlgDGMg~~TvtAaRi~~g~~~-------~gee~~L~fe~FP~~GlSKTy~~d~qVpDSA~tATAylcGvK~n~gtiGv  149 (529)
T KOG4126|consen   77 LFLGDGMGVSTVTAARILKGQLN-------LGEETQLAFDRFPYTGLSKTYCSDKQVPDSACTATAYLCGVKTNYGTIGV  149 (529)
T ss_pred             EEeeCCCChhhhHHhhhhccccc-------cCcCceeeeccCccccccccccccccCCchhHhHHHHhhccccccccccc
Confidence            69999999999999999999853       35788999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994         81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY  160 (268)
Q Consensus        81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~  160 (268)
                      ++.+.+.+|..+.++++.|.||+||||++||+||||||+||||||||++|||+.+|+||||.+||++.+.  .+|.|||+
T Consensus       150 ~a~v~~~~C~~~~~~~~~v~SIl~wAq~AGk~tG~VTTTRvThAsPag~yAH~anR~wE~D~~v~~~~~~--~~c~DiA~  227 (529)
T KOG4126|consen  150 SAAVRFNDCGASANEGNHVISILEWAQLAGKSTGLVTTTRVTHASPAGAYAHVANRNWECDAEVPASAGG--EGCQDIAR  227 (529)
T ss_pred             ccccccCCccccccccccchHHHHHHHHhCcccceEEEeeeccCCchhhhhccccccccccccccccccc--cchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988764  68999999


Q ss_pred             HHhhcCCCCceEEEEcCCccCcccCCCCC-CCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCCcE
Q psy17994        161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKD-DEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL  239 (268)
Q Consensus       161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~-~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~~l  239 (268)
                      ||+++++|+.+|||||||+++|+|.+..+ +++..|+|.|||||+++|+.++ .. .|++||+||.||++++... +++|
T Consensus       228 QLi~~~~G~~l~Vi~GGGr~~f~~~~~~d~~~g~~g~R~DGrnLi~ew~~~k-~~-~~~~~V~nrkeL~~ln~s~-~~~L  304 (529)
T KOG4126|consen  228 QLIEQPVGKNLDVILGGGRKYFLPKGTNDSDYGVPGERLDGRNLLDEWRAKK-LH-VGGQYVWNRKELLNLNLSK-TDYL  304 (529)
T ss_pred             HHhccCCCCceEEEecCCcccccCCCCCCccCCCcccccccHHHHHHHHhhh-cc-cCceEEechHHHhhccccc-ccee
Confidence            99999999999999999999999999888 5567789999999999999854 22 6999999999999997666 8999


Q ss_pred             EEeecCCCCcccccC
Q psy17994        240 LGMNLFFFLSWASHS  254 (268)
Q Consensus       240 LGLf~~~~~~~~~~~  254 (268)
                      ||||+++||+|++++
T Consensus       305 lGLF~~~hm~y~~~r  319 (529)
T KOG4126|consen  305 LGLFANGHMSYHIDR  319 (529)
T ss_pred             eEeccCCCccccccc
Confidence            999999999999995

>smart00098 alkPPc Alkaline phosphatase homologues Back     alignment and domain information
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3 Back     alignment and domain information
>PRK10518 alkaline phosphatase; Provisional Back     alignment and domain information
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH Back     alignment and domain information
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1shn_A 478 Crystal Structure Of Shrimp Alkaline Phosphatase Wi 1e-61
1k7h_A 476 Crystal Structure Of Shrimp Alkaline Phosphatase Le 3e-61
1zed_A 484 Alkaline Phosphatase From Human Placenta In Complex 3e-47
1ew2_A 513 Crystal Structure Of A Human Phosphatase Length = 5 3e-47
3mk0_A 484 Refinement Of Placental Alkaline Phosphatase Comple 9e-47
1khj_A 449 E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mi 8e-10
1ani_A 446 Alkaline Phosphatase (D153h, K328h) Length = 446 9e-10
2anh_A 446 Alkaline Phosphatase (D153h) Length = 446 9e-10
1y7a_A 449 Structure Of D153hK328W E. COLI ALKALINE PHOSPHATAS 1e-09
1alk_A 449 Reaction Mechanism Of Alkaline Phosphatase Based On 1e-08
3bdh_A 458 Crystal Structure Of Zinc-Deficient Wild-Type E. Co 1e-08
1alh_A 446 Kinetics And Crystal Structure Of A Mutant E. Coli 1e-08
1kh4_A 449 E. Coli Alkaline Phosphatase Mutant (D330n) In Comp 1e-08
3bdg_B 458 Crystal Structure Of Wild-TypeT155V MIXED DIMER OF 1e-08
1anj_A 446 Alkaline Phosphatase (K328h) Length = 446 1e-08
1ed8_A 449 Structure Of E. Coli Alkaline Phosphatase Inhibited 1e-08
3dyc_A 449 Structure Of E322y Alkaline Phosphatase In Complex 1e-08
1alj_A 449 Alkaline Phosphatase Mutant (H412n) Length = 449 1e-08
1hqa_A 449 Alkaline Phosphatase (H412q) Length = 449 1e-08
1ajd_A 449 Three-Dimensional Structure Of The D153g Mutant Of 1e-08
1kh7_A 449 E. Coli Alkaline Phosphatase Mutant (D153gd330n) Le 2e-08
3cmr_A 449 E. Coli Alkaline Phosphatase Mutant R166s In Comple 2e-08
3bdf_A 458 Crystal Structure Of Metal-Free E. Coli Alkaline Ph 3e-08
2g9y_A 449 Structure Of S102t E. Coli Alkaline Phosphatase In 3e-08
1urb_A 446 Alkaline Phosphatase (N51mg) Length = 446 4e-08
1elz_A 449 E. Coli Alkaline Phosphatase Mutant (S102g) Length 4e-08
1b8j_A 449 Alkaline Phosphatase Complexed With Vanadate Length 4e-08
1hjk_A 449 Alkaline Phosphatase Mutant H331q Length = 449 4e-08
2iuc_A375 Structure Of Alkaline Phosphatase From The Antarcti 5e-08
3e2d_A 502 The 1.4 A Crystal Structure Of The Large And Cold-A 5e-08
2iuc_B375 Structure Of Alkaline Phosphatase From The Antarcti 5e-08
1ely_A 449 E. Coli Alkaline Phosphatase Mutant (S102c) Length 7e-08
3dpc_A 455 Structure Of E.Coli Alkaline Phosphatase Mutant In 8e-08
2w5x_A375 Structure Of Tab5 Alkaline Phosphatase Mutant His 1 2e-06
2w5v_A375 Structure Of Tab5 Alkaline Phosphatase Mutant His 1 2e-06
3a52_A 400 Crystal Structure Of Cold-Active Alkailne Phosphata 5e-06
1elx_A 449 E. Coli Alkaline Phosphatase Mutant (S102a) Length 3e-05
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With Phosphate Bound Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 161/246 (65%), Gaps = 15/246 (6%)
Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
            FLGDGMSL T+TAARIYKG L        + E++ +S+E F F  ++KTY  D+Q  DS
Sbjct: 33  FFLGDGMSLSTVTAARIYKGGL------TGKFEREKISWEEFDFAALSKTYNTDKQVTDS 86
Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           A +ATAYL GVK N G IG+++   R NC    +   FT SI  W Q+ G+STGVVT+TR
Sbjct: 87  AASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTR 146
Query: 121 VTHASPAGTYAHTAERDWECDADI---KKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGG 177
           VTHA+PAGTYAH A+RDWE D+D+   ++DPE     C DIA QLV  +PG+  KVIMGG
Sbjct: 147 VTHATPAGTYAHVADRDWENDSDVVHDREDPEI----CDDIAEQLVFREPGKNFKVIMGG 202
Query: 178 GRAKFLPVSSKDDEGNV-GERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGT 236
           GR  F P  + D E  + GER DG+ LI +WL DK ++   A ++  R  LL +D  + T
Sbjct: 203 GRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDI-RNT 261
Query: 237 DYLLGM 242
           DYL+G+
Sbjct: 262 DYLMGL 267
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase Length = 476 Back     alignment and structure
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With P- Nitrophenyl-Phosphonate Length = 484 Back     alignment and structure
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase Length = 513 Back     alignment and structure
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed With Nitrophenyl Length = 484 Back     alignment and structure
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of The Transition States With Aluminium Fluoride Length = 449 Back     alignment and structure
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h) Length = 446 Back     alignment and structure
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h) Length = 446 Back     alignment and structure
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN Presence Of Cobalt At 1.77 A Resolution Length = 449 Back     alignment and structure
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On Crystal Structures. Two Metal Ion Catalysis Length = 449 Back     alignment and structure
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli Alkaline Phosphatase Length = 458 Back     alignment and structure
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli Alkaline Phosphatase (Asp-369-->asn): A Mechanism Involving One Zinc Per Active Site Length = 446 Back     alignment and structure
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex With Phosphate Length = 449 Back     alignment and structure
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI ALKALINE Phosphatase Length = 458 Back     alignment and structure
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h) Length = 446 Back     alignment and structure
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The Inorganic Phosphate At 1.75a Resolution Length = 449 Back     alignment and structure
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With Inorganic Phosphate Length = 449 Back     alignment and structure
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n) Length = 449 Back     alignment and structure
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q) Length = 449 Back     alignment and structure
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli Alkaline Phosphatase: A Mutant With Weaker Magnesium Binding And Increased Catalytic Activity Length = 449 Back     alignment and structure
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Length = 449 Back     alignment and structure
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With Phosphate Length = 449 Back     alignment and structure
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline Phosphatase (T155v) Length = 458 Back     alignment and structure
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In Presence Of Phosphate At 2.00 A Resolution Length = 449 Back     alignment and structure
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg) Length = 446 Back     alignment and structure
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g) Length = 449 Back     alignment and structure
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate Length = 449 Back     alignment and structure
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q Length = 449 Back     alignment and structure
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic Bacterium Tab5 Length = 375 Back     alignment and structure
>pdb|3E2D|A Chain A, The 1.4 A Crystal Structure Of The Large And Cold-Active Vibrio Sp. Alkaline Phosphatase Length = 502 Back     alignment and structure
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic Bacterium Tab5 Length = 375 Back     alignment and structure
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c) Length = 449 Back     alignment and structure
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex With A Phosphorylated Peptide Length = 455 Back     alignment and structure
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu With Mg Bound In The M3 Site. Length = 375 Back     alignment and structure
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp With Mg Bound In The M3 Site. Length = 375 Back     alignment and structure
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From Psychrophile Shewanella Sp. Length = 400 Back     alignment and structure
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a) Length = 449 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1k7h_A 476 Alkaline phosphatase; hydrolase, transferase, phos 1e-103
1zed_A 484 Alkaline phosphatase; phosphoserine, substrate ana 5e-98
3tg0_A 449 Apase, alkaline phosphatase; hydrolase; 1.20A {Esc 1e-81
3e2d_A 502 Alkaline phosphatase; cold-adaptation, metalloenzy 4e-80
2w0y_A 473 APH, alkaline phosphatase; hydrolase, halophilic; 2e-77
2w5v_A 375 Alkaline phosphatase; psychrophiles, cold adaptati 4e-77
3a52_A 400 Cold-active alkaline phosphatase; hydrolase; 2.20A 9e-68
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester, extended beta SHEE triad, metal triad; HET: NAG; 1.92A {Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A* Length = 476 Back     alignment and structure
 Score =  307 bits (788), Expect = e-103
 Identities = 126/246 (51%), Positives = 158/246 (64%), Gaps = 11/246 (4%)

Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
            FLGDGMSL T+TAARIYKG L  +       E++ +S+E F F  ++KTY  D+Q  DS
Sbjct: 33  FFLGDGMSLSTVTAARIYKGGLTGKF------EREKISWEEFDFAALSKTYNTDKQVTDS 86

Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           A +ATAYL GVK N G IG+++   R NC    +   FT SI  W Q+ G+STGVVT+TR
Sbjct: 87  AASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTR 146

Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
           VTHA+PAGTYAH A+RDWE D+D+  D E     C DIA QLV  +PG+  KVIMGGGR 
Sbjct: 147 VTHATPAGTYAHVADRDWENDSDVVHDREDPE-ICDDIAEQLVFREPGKNFKVIMGGGRR 205

Query: 181 KFLPVSSKDDE-GNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL 239
            F P  + D E G  GER DG+ LI +WL DK ++   A ++  R  LL +D    TDYL
Sbjct: 206 GFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIAN-TDYL 264

Query: 240 LGMNLF 245
           +G  LF
Sbjct: 265 MG--LF 268
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET: NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB: 1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A* Length = 484 Back     alignment and structure
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli} PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B 1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A* 1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ... Length = 449 Back     alignment and structure
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} Length = 502 Back     alignment and structure
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B Length = 375 Back     alignment and structure
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella} Length = 400 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
1k7h_A 476 Alkaline phosphatase; hydrolase, transferase, phos 100.0
1zed_A 484 Alkaline phosphatase; phosphoserine, substrate ana 100.0
3tg0_A 449 Apase, alkaline phosphatase; hydrolase; 1.20A {Esc 100.0
3e2d_A 502 Alkaline phosphatase; cold-adaptation, metalloenzy 100.0
2w0y_A 473 APH, alkaline phosphatase; hydrolase, halophilic; 100.0
2x98_A 431 Alkaline phosphatase; hydrolase; 1.70A {Halobacter 100.0
3a52_A 400 Cold-active alkaline phosphatase; hydrolase; 2.20A 100.0
2w5v_A 375 Alkaline phosphatase; psychrophiles, cold adaptati 99.94
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester, extended beta SHEE triad, metal triad; HET: NAG; 1.92A {Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-72  Score=547.96  Aligned_cols=245  Identities=51%  Similarity=0.824  Sum_probs=219.9

Q ss_pred             CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994          1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV   80 (268)
Q Consensus         1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv   80 (268)
                      ||||||||+++++|||+|+++..+      .+++.+|+||+||++|+++|||.|++|||||++||||+||+||+|++|||
T Consensus        33 lfIGDGMg~~~~taaR~~~~~~~~------~g~~~~L~~d~~p~~G~~~Ty~~d~~vtDSAa~aTA~~tGvKt~~g~Igv  106 (476)
T 1k7h_A           33 FFLGDGMSLSTVTAARIYKGGLTG------KFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGL  106 (476)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHHT------CGGGCCCGGGGSSEEEEEECCCSSCSSCCHHHHHHHHHHSCCCCTTCBSB
T ss_pred             EEEeCCCCHHHHHHHHHHhhcccc------CCccCccccccCCceeeeeecCCCCCCCCchhhhhhhhhcccccCceEee
Confidence            799999999999999999986432      23677899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994         81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY  160 (268)
Q Consensus        81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~  160 (268)
                      ++++.+.+|....+.+++++||+|+||++||+||||||+|||||||||||||+.+|+||+|.+||++++. ..+|.|||+
T Consensus       107 ~~~~~~~~c~~~~~~~~~~~tile~Ak~~Gk~tGiVtT~~ithATPAa~yAH~~~R~~e~d~~~~~~~~~-~~~~~dIA~  185 (476)
T 1k7h_A          107 DANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDRED-PEICDDIAE  185 (476)
T ss_dssp             CTTCCTTCGGGGGCGGGBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTTCCBSCTTCSSHHHHHHTTCC-TTTSCCHHH
T ss_pred             CCCcCCCCccccccccccccCHHHHHHHcCCCEEEEeccccCCCCceEEEEeccccccccccccchhhcc-cccHHHHHH
Confidence            9999999998776666899999999999999999999999999999999999999999999888866542 345999999


Q ss_pred             HHhhcCCCCceEEEEcCCccCcccCCCCCC-CCCccccCCcccHHHHHHhcccCCCCC--eEEecCHHHHhccCCCCCCC
Q psy17994        161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKDD-EGNVGERSDGQDLIKEWLLDKTNRTKK--AKFITTRQQLLELDPNKGTD  237 (268)
Q Consensus       161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~~-~~~~g~R~Dg~dL~~~~~~~~~~~~~G--y~~v~~~~eL~~l~~~~~~~  237 (268)
                      |||++.+|+++|||||||+++|+|+...++ ++..|+|+|||||+++|++++..  .|  |+||++++||+++++.. ++
T Consensus       186 Qlv~~~~g~~~dVilGGG~~~f~p~~~~d~~~~~~g~r~Dg~nL~~~~~~~~~~--~g~~y~~v~~~~~l~~~~~~~-~~  262 (476)
T 1k7h_A          186 QLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKAS--QGATASYVWNRDDLLAVDIAN-TD  262 (476)
T ss_dssp             HHHHSTTGGGCSEEEEECGGGGSBTTSBCTTTCCBCSBSSCCCHHHHHHHHHHH--TTCCEEEECSHHHHHTCCSTT-CS
T ss_pred             HHHhccCCCCceEEEeCChhhccCcccccccccccCccCcchhHHHHHHhhhhc--CCCceEEECCHHHHhhccccc-cc
Confidence            999987777899999999999999988776 35678999999999999984321  17  99999999999997655 79


Q ss_pred             cEEEeecCCCCcccccCC
Q psy17994        238 YLLGMNLFFFLSWASHSP  255 (268)
Q Consensus       238 ~lLGLf~~~~~~~~~~~~  255 (268)
                      ||||||+.++|+|++|+.
T Consensus       263 ~llGLF~~~~m~y~~dr~  280 (476)
T 1k7h_A          263 YLMGLFSYTHLDTVLTRD  280 (476)
T ss_dssp             EEEEECCSSSCCCTTTCC
T ss_pred             eEEEEecCCcCcchhccC
Confidence            999999999999999963
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET: NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB: 1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A* Back     alignment and structure
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli} SCOP: c.76.1.1 PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B 1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A* 1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ... Back     alignment and structure
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} Back     alignment and structure
>2x98_A Alkaline phosphatase; hydrolase; 1.70A {Halobacterium salinarum} Back     alignment and structure
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella} Back     alignment and structure
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1k7ha_ 476 c.76.1.1 (A:) Alkaline phosphatase {Northern shrim 8e-77
d1zeda1 479 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Ho 3e-70
d1y6va1 449 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherich 8e-51
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp (Pandalus borealis) [TaxId: 6703]} Length = 476 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Alkaline phosphatase-like
superfamily: Alkaline phosphatase-like
family: Alkaline phosphatase
domain: Alkaline phosphatase
species: Northern shrimp (Pandalus borealis) [TaxId: 6703]

 Score =  238 bits (609), Expect = 8e-77
 Identities = 119/240 (49%), Positives = 149/240 (62%), Gaps = 8/240 (3%)

Query: 1   MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
            FLGDGMSL T+TAARIYKG L  +   E       +S+E F F  ++KTY  D+Q  DS
Sbjct: 33  FFLGDGMSLSTVTAARIYKGGLTGKFEREK------ISWEEFDFAALSKTYNTDKQVTDS 86

Query: 61  ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
           A +ATAYL GVK N G IG+++   R NC    +   FT SI  W Q+ G+STGVVT+TR
Sbjct: 87  AASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTR 146

Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
           VTHA+PAGTYAH A+RDWE D+D+  D E     C DIA QLV  +PG+  KVIMGGGR 
Sbjct: 147 VTHATPAGTYAHVADRDWENDSDVVHDRED-PEICDDIAEQLVFREPGKNFKVIMGGGRR 205

Query: 181 KFLPVSSKDDE-GNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL 239
            F P  + D E G  GER DG+ LI +WL DK ++   A ++  R  LL +D       +
Sbjct: 206 GFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLM 265
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 479 Back     information, alignment and structure
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli [TaxId: 562]} Length = 449 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1zeda1 479 Alkaline phosphatase {Human (Homo sapiens) [TaxId: 100.0
d1k7ha_ 476 Alkaline phosphatase {Northern shrimp (Pandalus bo 100.0
d1y6va1 449 Alkaline phosphatase {Escherichia coli [TaxId: 562 100.0
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Alkaline phosphatase-like
superfamily: Alkaline phosphatase-like
family: Alkaline phosphatase
domain: Alkaline phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-66  Score=503.30  Aligned_cols=239  Identities=42%  Similarity=0.719  Sum_probs=213.4

Q ss_pred             CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994          1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV   80 (268)
Q Consensus         1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv   80 (268)
                      ||||||||+++++|||+|+++..+     ..+++.+|+||+||+.|+++|||.|++|||||++||||+||+||+|++|||
T Consensus        38 l~IgDGmg~~~~taaR~~~g~~~~-----~~g~~~~L~~d~~p~~g~~~T~s~d~~vtDSAa~aTA~atG~Kt~ng~igv  112 (479)
T d1zeda1          38 IFLGDGMGVSTVTAARILKGQKKD-----KLGPEIPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGL  112 (479)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTT-----SCSTTSCCTGGGCSEEEEEECCCSSCSSCCHHHHHHHHHHSSCCCTTCBSB
T ss_pred             EEEeCCCCHHHHHHHHHHhccccC-----CCCcCCccccccCceeEEEecccCCCCCCChHHHHHHHHhCccccCceeec
Confidence            799999999999999999988666     566778999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994         81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY  160 (268)
Q Consensus        81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~  160 (268)
                      +++....+|....  +++++||+|+||++||+||||||++||||||||||||+.+|+||++..++...  ..++|.+||+
T Consensus       113 d~~~~~~~~~~~~--~~~~~tIle~Ak~~G~~tGiVTT~~ithATPAaf~AH~~~R~~~~d~~~~~~~--~~~~~~~ia~  188 (479)
T d1zeda1         113 SAAARFNQCNTTR--GNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASA--RQEGCQDIAT  188 (479)
T ss_dssp             CTTSCTTCGGGCT--TCBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTTCCBSCTTCCSGGGSCHHH--HHTTCCCHHH
T ss_pred             ccccccCcccccc--ccchHHHHHHHHHcCCceeeeeccccCCccceeeeecccccccccccccchhh--hhhcchhHHH
Confidence            9999999998775  78999999999999999999999999999999999999999999886654321  1467899999


Q ss_pred             HHhhcCCCCceEEEEcCCccCcccCCCCCCC-----CCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCC
Q psy17994        161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKDDE-----GNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKG  235 (268)
Q Consensus       161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~~~-----~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~  235 (268)
                      |+|.+.   ++|||||||+++|+|+...+++     ...+.|.||+||+++|+..+    .||+||+++++|+++.....
T Consensus       189 q~i~~~---~~dVilGGG~~~f~p~~~~~~~~~~~~~~~g~r~Dg~~L~~~~~~~~----~g~~~v~~~~~l~~~~~~~~  261 (479)
T d1zeda1         189 QLISNM---DIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKR----QGARYVWNRTELMQASLDPS  261 (479)
T ss_dssp             HHHHTS---CCSEEEEECGGGGSBTTCCCSSCTTCGGGSCCBSSCCCHHHHHHHTC----TTEEEECSHHHHHHHHTCTT
T ss_pred             HHhccc---cccEEeccchhhccccCCCCccccchhcccCcccchHHHHHHHHHhc----cCceEEechHHhhhcccccC
Confidence            999753   8999999999999999877654     34688999999999998743    78999999999998754333


Q ss_pred             CCcEEEeecCCCCcccccCC
Q psy17994        236 TDYLLGMNLFFFLSWASHSP  255 (268)
Q Consensus       236 ~~~lLGLf~~~~~~~~~~~~  255 (268)
                      .++|||||+.++|+|++++.
T Consensus       262 ~~~llGlf~~~~l~~~~~~~  281 (479)
T d1zeda1         262 VTHLMGLFEPGDMKYEIHRD  281 (479)
T ss_dssp             CSEEEEECSSSSCCCGGGCC
T ss_pred             cceeEEeccCCCCccccccC
Confidence            68999999999999999853
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp (Pandalus borealis) [TaxId: 6703]} Back     information, alignment and structure
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure