Psyllid ID: psy179

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MPELVLSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYRD
cccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHcccccccEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccEEEEEEEEEEEEcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccEEEccc
cccEEEcHHHHcccEEEHHHHHHHHHEEcccccccccccccccccccccccccccHHHHHHHHHEHcccccccccHcHHEEEEcccccccEEEccccccccccccccEEEEEEccHHHHHHHEEEEEccccccccccccHHHHHHHHHcccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHccccccEcccccccccccEEEEEHcHHHHHHHHHHHHHHHHHccccccccHHccccccccccEEEEEEEEcccEEEEEEEEEEEEEccccccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccEEEEcc
mpelvlspeacmgkvfsiddMNSLYsiieplshsksqpnTVAEFLKSLIGLSSYTPHLLMFQTYIetsgflsqSDLEKYCTLLTTLQdkfevipkpkldsamhnggsrlVQCNVQCMQMLctlhctsldpplhvksnltnanVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKeilgtdgvliyptfpaqaqrhgeiLLTTSGVYYAMLANVigfpstnvplglgsnglpvglqvCETASVAQCVTSFvanehsplipstpqyldnidsprrsmAVDYVWTQVKGFIDIKLMFVVKITShlgdywspalhkvmagpnqDRLCLAVAKKLEDIfygwtmpnstgmlveyrd
mpelvlspeacMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVAnehsplipstPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDifygwtmpnstgmlveyrd
MPELVLSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYRD
*********ACMGKVFSIDDMNSLYSIIEPL********TVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGML*****
**ELVL*PEACMGKVFSIDDMNSLYSIIE***********VAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTP**************VDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYR*
MPELVLSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYRD
*PELVLSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPELVLSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNSTGMLVEYRD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q6DH69532 Fatty-acid amide hydrolas yes N/A 0.181 0.122 0.461 3e-10
Q05AM4526 Fatty-acid amide hydrolas no N/A 0.178 0.121 0.421 2e-07
Q7XJJ7607 Fatty acid amide hydrolas yes N/A 0.389 0.230 0.274 1e-06
Q6GMR7532 Fatty-acid amide hydrolas yes N/A 0.178 0.120 0.406 5e-06
>sp|Q6DH69|FAH2A_DANRE Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1 Back     alignment and function desciption
 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 181 LKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPV 240
           L+E+LGTDGVL+YP+ P  AQ+H   + T     Y  + N++G P T  PLGL + GLP+
Sbjct: 435 LEELLGTDGVLLYPSHPLIAQKHHHPIFTPFNFSYTGIFNILGLPVTQCPLGLSAEGLPL 494

Query: 241 GLQVC 245
           G+Q+ 
Sbjct: 495 GVQIV 499

Danio rerio (taxid: 7955)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9
>sp|Q05AM4|FAH2B_DANRE Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1 Back     alignment and function description
>sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1 Back     alignment and function description
>sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
157124584 519 amidase [Aedes aegypti] gi|108873923|gb| 0.253 0.175 0.388 1e-10
157104752 519 amidase [Aedes aegypti] gi|108869136|gb| 0.253 0.175 0.388 1e-10
195381249 534 GJ21547 [Drosophila virilis] gi|19414416 0.225 0.151 0.488 1e-10
195056514 535 GH22975 [Drosophila grimshawi] gi|193899 0.225 0.151 0.476 3e-10
195149714 528 GL11255 [Drosophila persimilis] gi|19845 0.225 0.153 0.476 3e-10
195436230 525 GK22129 [Drosophila willistoni] gi|19416 0.225 0.154 0.464 3e-10
347967739 519 AGAP002377-PA [Anopheles gambiae str. PE 0.175 0.121 0.523 4e-10
270012569 490 hypothetical protein TcasGA2_TC006725 [T 0.192 0.140 0.463 4e-10
91089461 524 PREDICTED: similar to amidase [Tribolium 0.178 0.122 0.484 5e-10
91076824 515 PREDICTED: similar to amidase isoform 1 0.172 0.120 0.532 5e-10
>gi|157124584|ref|XP_001654117.1| amidase [Aedes aegypti] gi|108873923|gb|EAT38148.1| AAEL009925-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 143 VFHVSENFCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQR 202
           ++H    F  + Q    Y R  D L ++++          + LGTDGVL  PT+P  A R
Sbjct: 402 LYHTKHLFSPEDQ--QRYLRMKDELRKQII----------DTLGTDGVLFLPTYPTPAIR 449

Query: 203 HGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVC 245
           H +     +GV Y ML N +GFP T+VPLG    GLP+G+QV 
Sbjct: 450 HYDSFSHITGVTYTMLFNALGFPGTHVPLGFNKKGLPIGIQVV 492

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157104752|ref|XP_001648552.1| amidase [Aedes aegypti] gi|108869136|gb|EAT33361.1| AAEL014361-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195381249|ref|XP_002049366.1| GJ21547 [Drosophila virilis] gi|194144163|gb|EDW60559.1| GJ21547 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195056514|ref|XP_001995112.1| GH22975 [Drosophila grimshawi] gi|193899318|gb|EDV98184.1| GH22975 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195149714|ref|XP_002015801.1| GL11255 [Drosophila persimilis] gi|198456487|ref|XP_001360345.2| GA21360 [Drosophila pseudoobscura pseudoobscura] gi|194109648|gb|EDW31691.1| GL11255 [Drosophila persimilis] gi|198135630|gb|EAL24920.2| GA21360 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195436230|ref|XP_002066072.1| GK22129 [Drosophila willistoni] gi|194162157|gb|EDW77058.1| GK22129 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|347967739|ref|XP_563817.3| AGAP002377-PA [Anopheles gambiae str. PEST] gi|333468322|gb|EAL40937.3| AGAP002377-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|270012569|gb|EFA09017.1| hypothetical protein TcasGA2_TC006725 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91089461|ref|XP_968383.1| PREDICTED: similar to amidase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91076824|ref|XP_967870.1| PREDICTED: similar to amidase isoform 1 [Tribolium castaneum] gi|270001790|gb|EEZ98237.1| hypothetical protein TcasGA2_TC000676 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
FB|FBgn0037547530 CG7910 [Drosophila melanogaste 0.178 0.120 0.453 1.6e-14
ZFIN|ZDB-GENE-040718-453532 faah2a "fatty acid amide hydro 0.178 0.120 0.468 2.4e-13
FB|FBgn0039341523 CG5112 [Drosophila melanogaste 0.211 0.145 0.384 6e-11
FB|FBgn0038803552 CG5191 [Drosophila melanogaste 0.175 0.114 0.444 2.9e-10
FB|FBgn0033717529 CG8839 [Drosophila melanogaste 0.225 0.153 0.470 2.9e-10
WB|WBGene00013164535 Y53F4B.18 [Caenorhabditis eleg 0.178 0.119 0.468 7.1e-10
UNIPROTKB|Q6GMR7532 FAAH2 "Fatty-acid amide hydrol 0.178 0.120 0.406 4.5e-09
FB|FBgn0037548536 CG7900 [Drosophila melanogaste 0.270 0.180 0.364 6.6e-09
ZFIN|ZDB-GENE-061027-358526 faah2b "fatty acid amide hydro 0.178 0.121 0.421 5.1e-07
TAIR|locus:2179371607 FAAH "AT5G64440" [Arabidopsis 0.426 0.252 0.288 6.3e-06
FB|FBgn0037547 CG7910 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 151 (58.2 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:   181 LKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPV 240
             L ++LGT GVLI PTF   A      LL  +G+   +L N++G P+T+VP+G    G+P+
Sbjct:   435 LNQLLGTQGVLIMPTFHTSALCFHTSLLNVTGIDNLLLFNILGLPATHVPMGTNQRGMPI 494

Query:   241 GLQV 244
             GLQV
Sbjct:   495 GLQV 498
GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
ZFIN|ZDB-GENE-040718-453 faah2a "fatty acid amide hydrolase 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0039341 CG5112 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033717 CG8839 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00013164 Y53F4B.18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GMR7 FAAH2 "Fatty-acid amide hydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0037548 CG7900 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061027-358 faah2b "fatty acid amide hydrolase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2179371 FAAH "AT5G64440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
pfam01425431 pfam01425, Amidase, Amidase 2e-09
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 1e-07
PRK06170490 PRK06170, PRK06170, amidase; Provisional 3e-05
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 1e-04
PRK06061483 PRK06061, PRK06061, amidase; Provisional 2e-04
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 5e-04
PRK07235502 PRK07235, PRK07235, amidase; Provisional 0.003
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information 
 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAM-------LANVIGFPSTNVPLGLGSNGLPVGL 242
           VL+ PT P  A R GE   + + +Y  +        AN+ G P+ ++P G   +GLPVGL
Sbjct: 359 VLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLPVGL 418

Query: 243 QV 244
           Q+
Sbjct: 419 QI 420

Length = 431
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG1212|consensus560 99.84
PRK06170490 amidase; Provisional 99.76
PRK06169466 putative amidase; Provisional 99.73
PRK06102452 hypothetical protein; Provisional 99.72
PRK07042464 amidase; Provisional 99.72
PRK07488472 indole acetimide hydrolase; Validated 99.71
PRK07056454 amidase; Provisional 99.71
PRK07235502 amidase; Provisional 99.7
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 99.69
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 99.68
PRK07486484 amidase; Provisional 99.68
PRK05962424 amidase; Validated 99.67
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 99.67
PRK07487469 amidase; Provisional 99.66
PRK08186600 allophanate hydrolase; Provisional 99.66
PRK07869468 amidase; Provisional 99.65
TIGR02713561 allophanate_hyd allophanate hydrolase. Allophanate 99.65
PRK06061483 amidase; Provisional 99.65
PRK06529482 amidase; Provisional 99.64
PRK08310395 amidase; Provisional 99.64
PRK08137497 amidase; Provisional 99.64
PRK07139439 amidase; Provisional 99.64
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 99.62
PLN02722422 indole-3-acetamide amidohydrolase 99.62
PRK09201465 amidase; Provisional 99.61
PRK12470462 amidase; Provisional 99.61
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 99.57
PRK06828491 amidase; Provisional 99.33
PRK06707536 amidase; Provisional 99.22
PRK11910615 amidase; Provisional 99.15
PRK06565566 amidase; Validated 98.95
KOG1211|consensus506 98.6
>KOG1212|consensus Back     alignment and domain information 
Probab=99.84  E-value=8e-21  Score=196.88  Aligned_cols=120  Identities=40%  Similarity=0.580  Sum_probs=90.1

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCCCCCceeEEEeecccccccccccc
Q psy179          179 FGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFV  258 (359)
Q Consensus       179 ~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~  258 (359)
                      ........+.||||||++|++||+|+.+.....++.||++||++|+||.+||++......-.   +              
T Consensus       439 ~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~---~--------------  501 (560)
T KOG1212|consen  439 FILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEK---E--------------  501 (560)
T ss_pred             HHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhc---c--------------
Confidence            33444557899999999999999999887777789999999999999999999875421100   1              


Q ss_pred             cCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcC-CCCCCCCceeEeecCCCchHHHHHHHHH
Q psy179          259 ANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSH-LGDYWSPALHKVMAGPNQDRLCLAVAKK  337 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Pv~vQVVgrr~~De~lLavAk~  337 (359)
                        ++.      +            +.+               .++.....+ .+..|+|+||||||.||+||.||++|++
T Consensus       502 --~~~------~------------~~D---------------~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~  546 (560)
T KOG1212|consen  502 --EEY------P------------MND---------------KWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARE  546 (560)
T ss_pred             --ccc------c------------ccc---------------HHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHH
Confidence              000      0            000               111222234 3455799999999999999999999999


Q ss_pred             HHHHhcCCCCCCC
Q psy179          338 LEDIFYGWTMPNS  350 (359)
Q Consensus       338 lE~~l~~~~~~~~  350 (359)
                      ||+.++||..|..
T Consensus       547 lE~~~gg~~~p~~  559 (560)
T KOG1212|consen  547 LERKFGGWVRPGP  559 (560)
T ss_pred             HHHHhCCccCCCC
Confidence            9999999998864

>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>KOG1211|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 4e-06
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 4e-06
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 4e-05
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 1e-04
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 1e-04
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 16/71 (22%)

Query: 190 VLIYPTFPAQAQRHGEILLTTSG----------------VYYAMLANVIGFPSTNVPLGL 233
           +LI PT   Q    GE++L                    + + +  NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442

Query: 234 GSNGLPVGLQV 244
            S+G+P+G+Q+
Sbjct: 443 SSDGMPIGVQI 453
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 99.79
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 99.77
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 99.75
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 99.75
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 99.74
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 99.72
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 99.71
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 99.7
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 99.7
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 99.65
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
Probab=99.79  E-value=7.8e-19  Score=182.20  Aligned_cols=211  Identities=17%  Similarity=0.130  Sum_probs=131.1

Q ss_pred             hHHHHHHHHhhhcccccccCCCccchhhh---------cCCccceehhhhhhhhhhhcccccCCCccccccccc------
Q psy179           75 DLEKYCTLLTTLQDKFEVIPKPKLDSAMH---------NGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLT------  139 (359)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~h~~~~~p~~~~k~~l~------  139 (359)
                      .+++-++.|+.+|..++++..|.++.++.         +||..+       ++.   ++...++|.++.-..+.      
T Consensus       339 a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~~dg~~~~-------~~~---~~~e~~~p~~~~~~~~~~lp~~l  408 (573)
T 3ppm_A          339 ALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSF-------LQN---FKGDFVDPCLGDLILILRLPSWF  408 (573)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCTTHHHHHHTHHHHHHTTBTTHHH-------HGG---GTTSCCCGGGTTHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHHHHHhhhhHHHH-------HHH---hccCcccHHHHHHhhhccchHHH
Confidence            45677888999999999999998776542         333332       122   22334555543100000      


Q ss_pred             ----cccccccccch-hhhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccc
Q psy179          140 ----NANVFHVSENF-CTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSG  212 (359)
Q Consensus       140 ----~~~~~~v~~rf-~~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~  212 (359)
                          ..++..+..++ .........+..+++++..++ +++|  ++|.+.|.  ++|+||||+ +.+|++|+.+......
T Consensus       409 ~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r-~~~r--~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~  484 (573)
T 3ppm_A          409 KRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEI-EMYR--QSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGA  484 (573)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHH-HHHH--HHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGG
T ss_pred             HHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHH-HHHH--HHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccc
Confidence                00000000111 111233345677888888888 8899  99999995  599999999 5589998864333345


Q ss_pred             cccchhhhhcCCCeEEecCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhc
Q psy179          213 VYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQV  292 (359)
Q Consensus       213 ~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (359)
                      ..||.+||++|+|+++||+|+.+..      .+           ...+++++      .+.+           .+.+.  
T Consensus       485 ~~YT~l~NLLDyPA~vVPvg~v~~~------~d-----------~~~~~~~~------~~~~-----------~~d~~--  528 (573)
T 3ppm_A          485 VSYTMLYNCLDFPAGVVPVTTVTAE------DD-----------AQMELYKG------YFGD-----------IWDII--  528 (573)
T ss_dssp             GHHHHHHHHTTCCEEEEEEEECCHH------HH-----------HHHTTCCC------SSCS-----------HHHHH--
T ss_pred             cchhhhhHhhCCCeEEEeccccccc------cc-----------cccccccc------ccch-----------hhhhh--
Confidence            6899999999999999999875321      00           00001100      0000           01111  


Q ss_pred             cchhhhhhhHHHhhhcCCCCC-CCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCC
Q psy179          293 KGFIDIKLMFVVKITSHLGDY-WSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMP  348 (359)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~  348 (359)
                                 .++  .++.+ |+||||||||+||+||+||++|++||+++++...|
T Consensus       529 -----------~~~--~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~  572 (573)
T 3ppm_A          529 -----------LKK--AMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQP  572 (573)
T ss_dssp             -----------HHH--HTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC
T ss_pred             -----------hhh--hhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCC
Confidence                       111  13445 69999999999999999999999999999887655
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 9e-09
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-08
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 6e-08
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-06
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 2e-05
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.5 bits (130), Expect = 9e-09
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 155 QLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEI---LLTTS 211
              ++ +    +  + + +  ++   L E+L     ++ PT P  A + GEI   L    
Sbjct: 348 TFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYL 407

Query: 212 GVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244
              + + AN+ G P+ +VP G  SN LPVG+QV
Sbjct: 408 MDIFTIPANLAGLPAISVPFGF-SNNLPVGVQV 439
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 99.76
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 99.75
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 99.71
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 99.69
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 99.64
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.76  E-value=5.1e-19  Score=169.21  Aligned_cols=168  Identities=23%  Similarity=0.228  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHhhhcccccccCCCccchhhhcCCccceehhhhhhhhhh---hcccccCCCccccccccccccccccccch
Q psy179           74 SDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLC---TLHCTSLDPPLHVKSNLTNANVFHVSENF  150 (359)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~h~~~~~p~~~~k~~l~~~~~~~v~~rf  150 (359)
                      ..+++.++.|+.++..++++..|............+ + .....+.+.   ..|...++|.              +   .
T Consensus       241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~-~-~~e~~~~~~~~~~~~~~~~~~~--------------~---~  301 (412)
T d1ocka_         241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPII-Q-DFEAHRALAWEFSEHHDEIAPM--------------L---R  301 (412)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH-H-HHHHHHHTHHHHHHSGGGSCHH--------------H---H
T ss_pred             HHHHHHHHHHHHhhhccccccccchhhhhhhhhhhh-h-hHHHHHHHHHhhccccccchhh--------------h---h
Confidence            456778888999999998888776543211111111 0 011111110   1111112221              1   2


Q ss_pred             hhhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEec
Q psy179          151 CTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVP  230 (359)
Q Consensus       151 ~~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVP  230 (359)
                      ...++....+..+|.++++.| .+++  ++|.++|+++|+||+|++|.+||.++..  ......||.+||++|+|+++||
T Consensus       302 ~~~~~~~~~~~~~~~~a~~~r-~~~~--~~~~~~f~~~D~ll~Pt~p~~ap~~~~~--~~~~~~~t~~~nl~G~PaisvP  376 (412)
T d1ocka_         302 ASLDATVGLTPKEYDEARRIG-RRGR--RELGEVFEGVDVLLTYSAPGTAPAKALA--STGDPRYNRLWTLMGNPCVNVP  376 (412)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHH-HHHH--HHHHHHTTTCSEEEEESSSSSCCBGGGC--CCCCCTTTHHHHHHCCCEEEEE
T ss_pred             hhhhhhhccccccchhhhhhH-HHHH--HHHHHHHcCCCEEEeCCCCCCCcccccc--ccCChHHhHHHHHHCCCeEEEe
Confidence            223345567888999999888 8888  9999999999999999999999987643  2334579999999999999999


Q ss_pred             CCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCC
Q psy179          231 LGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHL  310 (359)
Q Consensus       231 vG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (359)
                      +|. .+|||+|+||                                                                  
T Consensus       377 ~g~-~~GlPvGlQi------------------------------------------------------------------  389 (412)
T d1ocka_         377 VLK-VGGLPIGVQV------------------------------------------------------------------  389 (412)
T ss_dssp             EEE-ETTEEEEEEE------------------------------------------------------------------
T ss_pred             ccC-CCCceEeEEE------------------------------------------------------------------
Confidence            985 6889988888                                                                  


Q ss_pred             CCCCCCceeEeecCCCchHHHHHHHHHHHHHhc
Q psy179          311 GDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFY  343 (359)
Q Consensus       311 ~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~  343 (359)
                                 ||++++|++||++|+.+|++|+
T Consensus       390 -----------ig~~~~D~~lL~~A~~~E~alg  411 (412)
T d1ocka_         390 -----------IARFGNDAHALATAWFLEDALA  411 (412)
T ss_dssp             -----------EECTTCHHHHHHHHHHHHHHHT
T ss_pred             -----------ECCCCCHHHHHHHHHHHHHHhC
Confidence                       9999999999999999999985
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure