Psyllid ID: psy18020

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Secondary Structure (PSIPRED)
cEEEccccccccEEEEEcccccccccEEEEEccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEEcccccccccEEEEEccccEEEEccccccccccEEcccHHcccccccHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtnlsglvyhIPVCIWlmdthpdhapicyvrptadmrinvsqnvdhtgkiyspylhtwtpqnskLEGLIKTLASAFsalpplyssrtkqepatnptyngnirptadmrinvsqnvdhtgkiyspylhtwtAQNSKLEGLIKTLASAFsalpplyssrtkqepatnptyngnmasnapyptqsympmpgsnvntpyptyppsaypgynpnaaaapsgsiypsyptpgatpgaggyspyplyppggstpatpypvptpspapavtsggtitdEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEktevdvdeavtttAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Flexible Loop (DISEMBL)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLyssrtkqepatnptyngnirptaDMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILkqtenelnqgkFKLARMFERIDKEKAELERSISFLKEKETELDEILAVltektevdvdeavtttapiykqilntfteeaatEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Low Complexity Region (SEG)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTpyptyppsaypgynpnaaaapsgsIypsyptpgatpgaggyspyplyppggstpatpypvptpspapavtsGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLtektevdvdeavtttaPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Disordered region (IsUnstruct)
****SGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSAL***************************MRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSAL*****************************************************************************************************************************************************************************************SFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISY**
Disordered Region (DISOPRED)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYS*****************************************************************************************************************************************************************************************************************************************************ELERSISFLKE*ET****************VDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS***
Disordered Region (DISEMBL)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Disordered Region (DISPRO)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSS**********************PTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYP**********************************************TITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxKFKLARMxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q99816	390	Tumor susceptibility gene	yes	N/A	0.672	0.748	0.430	1e-55
Q61187	391	Tumor susceptibility gene	yes	N/A	0.675	0.749	0.427	2e-54
Q6IRE4	391	Tumor susceptibility gene	yes	N/A	0.675	0.749	0.424	2e-54
Q66KB7	476	Ubiquitin-conjugating enz	no	N/A	0.182	0.165	0.417	4e-16
Q3U1V6	471	Ubiquitin-conjugating enz	no	N/A	0.182	0.167	0.455	1e-15
Q8IX04	471	Ubiquitin-conjugating enz	no	N/A	0.195	0.180	0.423	9e-15
Q6DBY5	471	Ubiquitin-conjugating enz	no	N/A	0.244	0.225	0.339	7e-12
Q9LHG8	398	Protein ELC OS=Arabidopsi	yes	N/A	0.179	0.195	0.443	2e-11
Q9FFY6	368	Protein ELC-like OS=Arabi	no	N/A	0.184	0.217	0.432	2e-10
P25604	385	Suppressor protein STP22	yes	N/A	0.237	0.267	0.296	0.0008

>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/330 (43%), Positives = 190/330 (57%), Gaps = 38/330 (11%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S   + 
Sbjct: 89  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS---RP 145

Query: 161 EPATNPTYNGNMASNAPYPTQSYMP-MPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIY 219
             A+ P Y     +  P P  SYMP MPG    +PYP+       GY PN +  P     
Sbjct: 146 ISASYPPYQ----ATGP-PNTSYMPGMPGG--ISPYPS-------GYPPNPSGYPGCPYP 191

Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
           P  P P  T      S YP  P          PV T  P+      GTI+++ I+ SL S
Sbjct: 192 PGGPYPATTS-----SQYPSQP----------PVTTVGPS----RDGTISEDTIRASLIS 232

Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
           AV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D+E AE++++I  LK
Sbjct: 233 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 292

Query: 340 EKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
           +K+ EL   L  +  ++E  D+DE +  TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 293 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 352

Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
           VIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct: 353 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 382

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator. Involved in the budding of many viruses through an interaction with viral proteins that contain a late-budding motif P-[ST]-A-P. This interaction is essential for viral particle budding of numerous retroviruses.
Homo sapiens (taxid: 9606)

>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/330 (42%), Positives = 188/330 (56%), Gaps = 37/330 (11%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PT+ M I   ++VD  GKIY PYLH W    S+L  LI+ +   F   PP++S  T  
Sbjct: 89  VKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVFSRPTVS 148

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYP-GYNPNAAAAPSGSIY 219
             A+ P Y     +  P P  SYMP   S +         SAYP GY PN +  P     
Sbjct: 149 --ASYPPY----TATGP-PNTSYMPGMPSGI---------SAYPSGYPPNPSGYPGCPYP 192

Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
           P+ P P  T      S YP  PP          V T  P+      GTI+++ I+ SL S
Sbjct: 193 PAGPYPATTS-----SQYPSQPP----------VTTVGPS----RDGTISEDTIRASLIS 233

Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
           AV DK+R +M E+   AQ E+  LK+TE +L +G  KL  M  R+D+E AE++++I  LK
Sbjct: 234 AVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293

Query: 340 EKETELDEILAVLTEKTEV-DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
           +K+ EL   L  +  ++E  D+DE +  TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 294 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 353

Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
           VIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct: 354 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator.

Mus musculus (taxid: 10090)

>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 37/330 (11%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PT+ M I   ++VD  GKIY PYLH W    S+L  LI+ +   F   PP++S  T  
Sbjct: 89  VKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVFSRPTVS 148

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYP-GYNPNAAAAPSGSIY 219
             A+ P Y       A  P  SY+P   S +         SAYP GY PN +  P     
Sbjct: 149 --ASYPPYTA-----AGPPNTSYLPSMPSGI---------SAYPSGYPPNPSGYPGCPYP 192

Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
           P+ P P  T      S YP  P          PV T  P    +  GTI+++ I+ SL S
Sbjct: 193 PAGPYPATTS-----SQYPSQP----------PVTTAGP----SRDGTISEDTIRASLIS 233

Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
           AV DK+R +M E+   AQ E+  LK+TE +L +G  KL  M  R+D+E AE++++I  LK
Sbjct: 234 AVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293

Query: 340 EKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
           +K+ EL   L  +  ++E  D+DE +  TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 294 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 353

Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
           VIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct: 354 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-I complex. Required for completion of cytokinesis; the function requires CEP55. May be involved in cell growth and differentiation. Acts as a negative growth regulator.

Rattus norvegicus (taxid: 10116)

>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+C+W++D+HP   P+C+++P+ +M I V +++D  G+IY PYL  W+   S +
Sbjct: 65  GTTYNIPICLWILDSHPFAPPLCFLKPSGNMGIRVGRHIDAQGRIYLPYLQNWSHPKSTV 124

Query: 66  EGLIKTLASAFSALPPLYS 84
            GLI+ +A  F    PLYS
Sbjct: 125 TGLIREMAVKFEEELPLYS 143

Possible negative regulator of polyubiquitination.

Xenopus tropicalis (taxid: 8364)

>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+  W++D+HP   PIC+++PTA+M I+V ++VD  G+IY PYL  W+   S +
Sbjct: 65  GKTYNIPIRFWILDSHPFAPPICFLKPTANMEISVGKHVDAKGRIYLPYLQNWSHPKSAI 124

Query: 66  EGLIKTLASAFSALPPLYS 84
            GLIK + + F    PLYS
Sbjct: 125 VGLIKEMIAKFQEELPLYS 143

Possible negative regulator of polyubiquitination.

Mus musculus (taxid: 10090)

>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 54/85 (63%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+  W++D+HP   PIC+++PTA+M I V ++VD  G+IY PYL  W+   S +
Sbjct: 65  GNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVI 124

Query: 66  EGLIKTLASAFSALPPLYSSRTKQE 90
            GLIK + + F    P+YS  +  E
Sbjct: 125 VGLIKEMIAKFQEELPMYSLSSSDE 149

Possible negative regulator of polyubiquitination.

Homo sapiens (taxid: 9606)

>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+ +WL+D+ P   PICY+RPT+ M I   ++VD  G+I+ P LH W    S +
Sbjct: 65  GRSYNIPILLWLLDSFPFTPPICYLRPTSSMVIREGKHVDSKGRIHLPALHNWDHPKSSV 124

Query: 66  EGLIKTLASAFSALPPL--YSSRTKQEPATNPTYNGNI-------RPTADMRINV 111
             L+  +   F   PPL   SS     P+    Y  N+       RP  +++++V
Sbjct: 125 NALLAEMIGKFEEEPPLGTKSSAHGDTPSNLLDYVSNLTITEGGNRPDQEVKVSV 179

Possible negative regulator of polyubiquitination.

Danio rerio (taxid: 7955)

>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQ-NVDHTGKIYSPYLHTWTPQNSK 64
           G+ Y+IPV IWL++++P H P  YV PTADM I     +V  +G +  PYL  W   +S 
Sbjct: 81  GVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSLPYLQNWVYPSSN 140

Query: 65  LEGLIKTLASAFSALPPLY 83
           L  L+  L++AF+  PPLY
Sbjct: 141 LVDLVSDLSAAFARDPPLY 159

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs) Mediates the association to the ESCRT-0 complex. May control nuclear division through the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 4   LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINV-SQNVDHTGKIYSPYLHTWTPQN 62
             G+ Y+IPV IWL++++P + P  YV PT DM I     NV  +G +  PYL  W   +
Sbjct: 79  FQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPS 138

Query: 63  SKLEGLIKTLASAFSALPPLY 83
           S L  L   L++AFS  PPLY
Sbjct: 139 SNLVDLASHLSAAFSRDPPLY 159

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P25604|STP22_YEAST Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK----------TEVDVDEAVTT 366
           +AR  E I  +K  L      +++    L+  + VLT            + VD DE V +
Sbjct: 258 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVD-DEDVNS 316

Query: 367 TAPI----YKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
            A        Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R
Sbjct: 317 IAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds to ubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex. Required for vacuolar targeting of temperature-sensitive plasma membrane proteins STE2 and CAN1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
193613390	439	PREDICTED: tumor susceptibility gene 101	0.847	0.838	0.453	1e-90
427783717	448	Putative tumor susceptibility protein [R	0.854	0.828	0.403	2e-80
350406335	420	PREDICTED: tumor susceptibility gene 101	0.728	0.752	0.479	4e-78
340716407	420	PREDICTED: LOW QUALITY PROTEIN: tumor su	0.728	0.752	0.476	9e-78
328777440	419	PREDICTED: tumor susceptibility gene 101	0.725	0.751	0.462	1e-76
380019659	416	PREDICTED: tumor susceptibility gene 101	0.725	0.757	0.473	2e-76
321453647	390	hypothetical protein DAPPUDRAFT_65881 [D	0.702	0.782	0.472	2e-74
242022318	377	conserved hypothetical protein [Pediculu	0.688	0.793	0.479	3e-73
157132735	392	tumor suppressor protein, putative [Aede	0.771	0.854	0.433	2e-72
289740943	416	vacuolar sorting protein/ubiquitin recep	0.725	0.757	0.460	5e-72

>gi|193613390|ref|XP_001945873.1| PREDICTED: tumor susceptibility gene 101 protein-like [Acyrthosiphon pisum]

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/437 (45%), Positives = 259/437 (59%), Gaps = 69/437 (15%)

Query: 1   MTNLSGLV--------YHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYS 52
           + NLSG V        YHIP+CIWLMDTHP++APICYV+PT DMRI +S  VDH GKIY 
Sbjct: 53  LVNLSGTVPVTFKGTTYHIPICIWLMDTHPNNAPICYVKPTLDMRIKMSMYVDHNGKIYL 112

Query: 53  PYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVS 112
           PYLH WTP  S L  LI  + + FS  PP+YS    ++P  NP Y     PT        
Sbjct: 113 PYLHNWTPTTSNLLDLIGIMTATFSETPPVYSVIRTEQPV-NPGY-----PTQ------- 159

Query: 113 QNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNM 172
                      PY    T  N  L          +S++P      T+    +NP+   + 
Sbjct: 160 ----------MPY--GGTGSNVML---------PYSSIP------TQSTATSNPSTAYHG 192

Query: 173 ASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAG 232
           +SN PYP            N  +PT  PS YP        + + S +P Y  P  T  + 
Sbjct: 193 SSNTPYPL----------YNNQFPT--PSPYP------TGSANTSNFPPYTPPYTTQNSS 234

Query: 233 GYSPYPLYPPGGSTPATPYPVPT---PSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKM 289
              PYP  P        PYP  T   P+P+  +  GGTIT+EHIK SL SA+EDK+RR+ 
Sbjct: 235 QNCPYPQQPAPIRPEYPPYPSTTSNLPNPSTGLNDGGTITEEHIKASLLSAIEDKVRRRF 294

Query: 290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349
           NEQ  Q + E++IL+ ++ EL+ GK KL  +   ++KEK+ELE++I  L++KE EL+  +
Sbjct: 295 NEQMAQNKAELDILQHSQQELSLGKNKLDSILTSLNKEKSELEQNIQVLRDKEIELEMAI 354

Query: 350 AVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV 409
           + L+++  +D+D+AVTTTAP+YKQILN+F EEAATED IYYMGEALRRGV+DLEV+LKQV
Sbjct: 355 SKLSKEDNIDIDDAVTTTAPLYKQILNSFAEEAATEDAIYYMGEALRRGVVDLEVFLKQV 414

Query: 410 RSLSRKQFMFRALLFKC 426
           RSLSRKQFM RAL+ +C
Sbjct: 415 RSLSRKQFMLRALMQRC 431

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783717|gb|JAA57310.1| Putative tumor susceptibility protein [Rhipicephalus pulchellus]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/434 (40%), Positives = 249/434 (57%), Gaps = 63/434 (14%)

Query: 2   TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQ 61
            N  G  Y+IPVCIWL+DTHP ++P+CYV+PT+ M+I VS++VD TG+++ PYLH W+P 
Sbjct: 62  VNYKGTTYNIPVCIWLLDTHPYNSPMCYVKPTSYMQIKVSRHVDQTGRVFLPYLHEWSPS 121

Query: 62  NSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKI 121
           +S L GLI+ +   F   PP++S   K +  ++P Y G            ++N    G  
Sbjct: 122 SSDLLGLIQVMIITFGETPPVFS---KPQEDSSPAYPG------------ARNTGAAGGF 166

Query: 122 YSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQ 181
           + P                     A   +PP    +        P Y    A+  PYP  
Sbjct: 167 FRP---------------------AAGVMPPAMGGQ--------PPYPTTAAAMPPYPPG 197

Query: 182 SYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPT-PGATPGAGGYSPYPLY 240
               MP     TP+  YPP++      +   + +G   P YP  P   P A     YP Y
Sbjct: 198 GATGMP-----TPWTPYPPASGAASASSNPVSGAGGGMPPYPVFPSVAPAA-----YPPY 247

Query: 241 PPGGSTPAT---PYPVPTPSPAPAVTSG-----GTITDEHIKMSLKSAVEDKIRRKMNEQ 292
           P  G+T A+   PYP  + +  PA ++G     GTIT EHI+ SL +AVE+K++ ++ E 
Sbjct: 248 PTSGATTASTGYPYPPASTTSTPAGSAGAASQTGTITQEHIRASLLTAVEEKVKARLKEA 307

Query: 293 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352
              AQ E+++LK+T +EL QGK KL  M  R+D+E+AELE ++  L+E+  EL E++  +
Sbjct: 308 LSGAQAEMDVLKRTHDELTQGKTKLDDMINRMDREQAELEANLQNLRERNEELKELIRKV 367

Query: 353 TEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSL 412
             +  ++VDEAV TTAP+YKQ++N F EE ATED IYY+GEALR+GVIDL+V+LK VR L
Sbjct: 368 ENQGSINVDEAVVTTAPLYKQLVNAFAEENATEDAIYYLGEALRKGVIDLDVFLKHVREL 427

Query: 413 SRKQFMFRALLFKC 426
           SRKQF+ RAL+ KC
Sbjct: 428 SRKQFLLRALMQKC 441

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406335|ref|XP_003487736.1| PREDICTED: tumor susceptibility gene 101 protein-like [Bombus impatiens]

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/344 (47%), Positives = 218/344 (63%), Gaps = 28/344 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PTADM I VS  VDH GKIY PYLH W   +S L  LI+ +   F   PP+Y+ + +Q
Sbjct: 93  VKPTADMDIKVSMFVDHNGKIYLPYLHDWVPHSSDLLSLIQIMIVTFGDQPPVYA-KPRQ 151

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPP----SAYPG----YNPNAAA 212
                    G   S+ PYP Q +MP+PGS  + P   +PP    S YPG    Y+P  + 
Sbjct: 152 ---------GIQTSSTPYPVQPFMPVPGSGTHIPGSNFPPYPQNSQYPGGSNIYSPYMST 202

Query: 213 APSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPT-PSPAPAVTSG--GTIT 269
             SG     +P  G+    GG +    YP  G T + PYP  T PSP    T+G  GTIT
Sbjct: 203 TSSG-----FPYQGSYGSYGGSASN--YPSQGCTGSFPYPPSTQPSPTVPATAGASGTIT 255

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
           +EHI+ SL SAVEDK+RR++ EQ  Q   E+E L++T+ EL  G   L  +FER+ KEKA
Sbjct: 256 EEHIRASLLSAVEDKLRRRLKEQFSQLVAELETLRRTQQELTSGFTHLTDLFERLKKEKA 315

Query: 330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIY 389
           ELE++I+ L++KE EL++ +A L++   +DVDEAVTT AP+YKQ+LN F EEAATED IY
Sbjct: 316 ELEKNITILQDKEAELEKEIAKLSDNQSIDVDEAVTTIAPLYKQMLNAFAEEAATEDAIY 375

Query: 390 YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA 433
           Y+GEALR G+IDL+ +LKQVR LSR+QFM RAL+ +C +    A
Sbjct: 376 YLGEALRCGIIDLDAFLKQVRQLSRRQFMLRALMQRCRQKAGLA 419

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716407|ref|XP_003396690.1| PREDICTED: LOW QUALITY PROTEIN: tumor susceptibility gene 101 protein-like [Bombus terrestris]

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 164/344 (47%), Positives = 216/344 (62%), Gaps = 28/344 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PTADM I VS  VDH GKIY PYLH W   +S L  LI+ +   F   PP+Y+   K 
Sbjct: 93  VKPTADMDIKVSMFVDHNGKIYLPYLHDWLPHSSDLLSLIQIMIVTFGDQPPVYAKPRK- 151

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPP----SAYPG----YNPNAAA 212
                    G   S+ PYP Q +MP+PGS  + P  ++PP    S YPG    Y+P  + 
Sbjct: 152 ---------GIQKSSTPYPVQPFMPVPGSGTHIPGSSFPPYPQNSQYPGGSNIYSPYMST 202

Query: 213 APSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPT-PSPAPAVTSG--GTIT 269
             SG     +P  G+    GG +    YP  G T + PYP  T PSP    T+G  GTIT
Sbjct: 203 TSSG-----FPYQGSYGSYGGSASN--YPSQGCTGSFPYPPSTQPSPTVPATAGASGTIT 255

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
           +EHI+ SL SAVEDK+RR++ EQ  Q   E+E L++T+ EL  G   L  +F +I KEKA
Sbjct: 256 EEHIRASLLSAVEDKLRRRLKEQFSQLVAELETLRRTQQELTSGFTHLTDLFXKIKKEKA 315

Query: 330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIY 389
           ELE++I+ L++KE EL++ +A L++   +DVDEAVTT AP+YKQ+LN F EEAATED IY
Sbjct: 316 ELEKNITILQDKEAELEKEIAKLSDNQSIDVDEAVTTIAPLYKQMLNAFAEEAATEDAIY 375

Query: 390 YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA 433
           Y+GEALR G+IDL+ +LKQVR LSR+QFM RAL+ +C +    A
Sbjct: 376 YLGEALRCGIIDLDAFLKQVRQLSRRQFMLRALMQRCRQKAGLA 419

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777440|ref|XP_392951.3| PREDICTED: tumor susceptibility gene 101 protein [Apis mellifera]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/344 (46%), Positives = 215/344 (62%), Gaps = 29/344 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PTADM I VS  VDH GKIY PYLH W   +S L  LI+ +   F   PP+Y+ + +Q
Sbjct: 93  VKPTADMSIKVSMFVDHNGKIYLPYLHDWLPHSSDLLSLIQIMIVTFGEQPPVYA-KPRQ 151

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTP---YPTYPP-SAYPGYN----PNAAA 212
                    G   S+ PYP QS+MP+PGS  + P   +P+YP  S Y G N    P  + 
Sbjct: 152 ---------GIQTSSIPYPVQSFMPVPGSGTHIPGSSFPSYPQNSQYTGGNNIYPPYMST 202

Query: 213 APSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYP---VPTPSPAPAVTSGGTIT 269
             SG  Y  Y + G T           YP  G T +  YP    P+P+    V++ GTIT
Sbjct: 203 TSSGFPYQGYGSYGGTASN--------YPSQGCTGSFQYPPSTQPSPTVPATVSASGTIT 254

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
           +EHI+ SL SAVEDK+RR++ EQ  Q   E+E L++T+ EL  G   L  +F+++ KEK 
Sbjct: 255 EEHIRASLLSAVEDKLRRRLKEQFSQLSAELETLRRTQQELTSGSAHLTDLFDKLKKEKT 314

Query: 330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIY 389
           ELE++I+ L++KE EL++ +A L++   +DVDEAVTT AP+YKQ+LN F EEAATED IY
Sbjct: 315 ELEKNITILQDKEAELEKEIAKLSDNQSIDVDEAVTTIAPLYKQMLNAFAEEAATEDAIY 374

Query: 390 YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA 433
           Y+GEALR G+IDL+ +LKQVR LSR+QFM RAL+ +C +    A
Sbjct: 375 YLGEALRCGIIDLDAFLKQVRQLSRRQFMLRALMQRCRQKAGLA 418

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019659|ref|XP_003693720.1| PREDICTED: tumor susceptibility gene 101 protein-like [Apis florea]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/344 (47%), Positives = 215/344 (62%), Gaps = 29/344 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PTADM I VS  VDH GKIY PYLH W   +S L  LI+ +   F   PP+Y+ + +Q
Sbjct: 90  VKPTADMSIKVSMFVDHNGKIYLPYLHDWLPHSSDLLSLIQIMIVTFGEQPPVYA-KPRQ 148

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTP---YPTYPP-SAYPGYN----PNAAA 212
                    G  A++ PYP Q +MP+PGS  + P   +P+YP  S Y G N    P  + 
Sbjct: 149 ---------GIQATSTPYPVQPFMPVPGSGTHIPGSSFPSYPQNSQYTGGNNIYPPYMST 199

Query: 213 APSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPT-PSPAPAVTSG--GTIT 269
             SG  Y  Y + G T           YP  G T +  YP  T PSP    T+G  GTIT
Sbjct: 200 TSSGFPYQGYGSYGGTASN--------YPSQGCTGSFQYPPSTQPSPTVPATAGASGTIT 251

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
           +EHI+ SL SAVEDK+RR++ EQ  Q   E+E L++T+ EL  G   L  +F+R+ KEK 
Sbjct: 252 EEHIRASLLSAVEDKLRRRLKEQFSQLSAELETLRRTQQELTSGSAHLTDLFDRLKKEKT 311

Query: 330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIY 389
           ELE++IS L++KE EL++ +A L++   +DVDEAVTT AP+YKQ+LN F EEAATED IY
Sbjct: 312 ELEKNISILQDKEAELEKEIAKLSDNQSIDVDEAVTTIAPLYKQMLNAFAEEAATEDAIY 371

Query: 390 YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA 433
           Y+GEALR G+IDL+ +LKQVR LSR+QFM RAL+ +C +    A
Sbjct: 372 YLGEALRCGIIDLDAFLKQVRQLSRRQFMLRALMQRCRQKAGLA 415

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321453647|gb|EFX64863.1| hypothetical protein DAPPUDRAFT_65881 [Daphnia pulex]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/332 (47%), Positives = 210/332 (63%), Gaps = 27/332 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           +RPT+DMR+ +S++VDH GK+Y PYLH W+A  S L  L++ +   F   PP+YS     
Sbjct: 78  VRPTSDMRLRISKHVDHNGKVYMPYLHVWSANESDLVALVQVMIIIFGEQPPVYS--VAG 135

Query: 161 EPATNPT--YNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSI 218
           +P +NP   Y G++A   PYPT +    P     TPYP YPP             P+ + 
Sbjct: 136 QPPSNPAAAYPGSLAGYPPYPTSATAYPPA----TPYPQYPP----------VNGPASTS 181

Query: 219 YPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLK 278
           YPSY            +         S+ A P P PTP+  P   S GTI+++HI+ SL 
Sbjct: 182 YPSYSGGYPPYPPAPGTI-------TSSAAYP-PYPTPAGVPNAQSTGTISEDHIRASLL 233

Query: 279 SAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL 338
           SAVEDK+RR+++E   QAQ EIE LK+TENEL  G+ KL  +  R+D+E+ E+ERSI+ L
Sbjct: 234 SAVEDKVRRRLSEIFAQAQAEIETLKKTENELRMGQSKLEDLGRRLDQEQNEVERSIASL 293

Query: 339 KEKETELDEILAVL-TEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRR 397
           KE+ +EL++ L  L ++    DVDEAV TTAPIYKQ+LN + EEAATED IYY+GE LRR
Sbjct: 294 KERNSELEDSLGKLKSQDKNFDVDEAVVTTAPIYKQLLNAYAEEAATEDAIYYLGEGLRR 353

Query: 398 GVIDLEVYLKQVRSLSRKQFMFRALLFKCYKH 429
           GV +L+V+LK VRSLSRKQFM RAL+ +C + 
Sbjct: 354 GVTELDVFLKNVRSLSRKQFMLRALMERCRQQ 385

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022318|ref|XP_002431587.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516895|gb|EEB18849.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 162/338 (47%), Positives = 201/338 (59%), Gaps = 39/338 (11%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PT  MRI +S+ VDH GKIY PYLH W+   S L  LI  L   FS  PPLY      
Sbjct: 55  LKPTPYMRIKISRYVDHNGKIYMPYLHDWSPNTSDLLSLIGVLIMHFSEEPPLYQVPRNN 114

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYP 220
            PA          S+ PYPTQS+MPMPG++     P YPP  Y    P    A     Y 
Sbjct: 115 APAP--------VSSTPYPTQSFMPMPGTSST---PVYPP--YSSAQPPYPIANQNIDYQ 161

Query: 221 SYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG------------TI 268
             P          Y PYP +P         YP   P P+   T+G             TI
Sbjct: 162 QQP----------YLPYPAFPKTNPV----YPPSFPYPSGTSTTGSDNTGSSTGTGTGTI 207

Query: 269 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 328
           T+EHI  SL SAVEDK+RR++ EQ  Q Q E+E L + + EL QGK +L  +  ++D E 
Sbjct: 208 TEEHIHASLLSAVEDKVRRRLREQLSQTQAELETLDKIQQELMQGKNRLDHLIAKLDAEH 267

Query: 329 AELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTI 388
           AE E++++ L++KE ELDE ++ L+EK  +DVDEAVTTTAP+YKQ+LN F EEAATED I
Sbjct: 268 AEWEKNLAVLRDKEQELDESISKLSEKGGIDVDEAVTTTAPLYKQLLNAFAEEAATEDVI 327

Query: 389 YYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKC 426
           YY+GEALRRGVIDL+V+LK VRSLS KQFM RAL+ KC
Sbjct: 328 YYLGEALRRGVIDLDVFLKHVRSLSHKQFMLRALMQKC 365

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132735|ref|XP_001656115.1| tumor suppressor protein, putative [Aedes aegypti] gi|108871089|gb|EAT35314.1| AAEL012515-PA [Aedes aegypti]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/383 (43%), Positives = 217/383 (56%), Gaps = 48/383 (12%)

Query: 66  EGLIKTLASAFSALPPLYSSRTKQEPA------TNPTYN--GNIRPTADMRINVSQNVDH 117
           +G +K L +    +P  Y   T   P       T+P Y     ++PT+DM I VS  VDH
Sbjct: 42  DGTVKQLINLQGTIPVRYKGNTYHIPICIWLLDTHPRYAPICYVKPTSDMHIKVSMYVDH 101

Query: 118 TGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSS-RTKQEPATNPTYNGNMASNA 176
            GKIY PYLH WT   S L GLI+ +   F   PP+YS  +  +E AT            
Sbjct: 102 NGKIYLPYLHDWTPMQSDLLGLIQVMIVTFGEYPPVYSKPKQPKEQAT------------ 149

Query: 177 PYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP 236
           PYPTQS+MP P     +PY  YP                G  +P YP P A     GY  
Sbjct: 150 PYPTQSFMPQPPPVTQSPYCPYP----------------GQQFPPYPQPTA-----GYGG 188

Query: 237 YPLYPPGGSTPATPYPVPTPSPA------PAVTSGGTITDEHIKMSLKSAVEDKIRRKMN 290
           Y    PGGS P    P    +        P     GTIT+EHIK SL SAVEDK++R++ 
Sbjct: 189 YGQQAPGGSYPPYMPPSMPTASGYNSGYNPTGQGTGTITEEHIKASLVSAVEDKLKRRIQ 248

Query: 291 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350
           E+  Q Q EI+ LK+T+ ELN+G+ K+  +  R+++++ EL +SI+ L++KE EL   L 
Sbjct: 249 EKVNQCQAEIQTLKRTQQELNEGQSKINDIIGRLERDQQELTKSIAVLQDKEQELQRALE 308

Query: 351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR 410
            L +   +DVDEAVTTTAP+YKQ+LN + EEAA ED +Y+MGEALR GVIDLEV+LK VR
Sbjct: 309 SLEKVDGIDVDEAVTTTAPLYKQLLNAYAEEAAIEDAVYFMGEALRSGVIDLEVFLKNVR 368

Query: 411 SLSRKQFMFRALLFKCYKHISYA 433
            LSRKQFM RAL+ KC +   ++
Sbjct: 369 QLSRKQFMLRALMQKCRQKAGFS 391

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740943|gb|ADD19219.1| vacuolar sorting protein/ubiquitin receptor vPS23 [Glossina morsitans morsitans]

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 158/343 (46%), Positives = 207/343 (60%), Gaps = 28/343 (8%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
           ++PT +M+I VS  VDH G+IY PYLH W   +S L  LI+ +   F   PP+YS   +Q
Sbjct: 91  VKPTQNMQIKVSMYVDHNGRIYLPYLHDWQPNSSDLLSLIQVMIVTFGEHPPVYSKPKEQ 150

Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNT---------PYPTYPPSAYPGYNPNAA 211
                           PYPT S+MP PG   N          PYPT   SA+P Y P A+
Sbjct: 151 V--------------TPYPTSSFMPQPGGTQNAATGPGNSYLPYPTSAASAFPPYPPTAS 196

Query: 212 AAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATP-YPVPTPSPAPAVTSGGTITD 270
           ++ SG  YP YP   +  GA   S    +PP  +  + P Y     S  P+ T  GTIT+
Sbjct: 197 SSFSG--YPPYPAANSAVGASSTSGAVTFPPYMNFSSVPGYNSGYNSSNPSTT--GTITE 252

Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
           EHIK SL SAVEDK+RR++ E+  Q Q EIE L +T+ EL +G  K+  +  R+ +E+ E
Sbjct: 253 EHIKASLVSAVEDKLRRRVQEKVNQCQAEIEALNRTKQELVEGSAKIDAIILRLQREEME 312

Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYY 390
           LE++I+ L++KE EL++ L  L     +D DEAVTTTAP+YKQ+LN + EEAATED IYY
Sbjct: 313 LEKNINILRDKEQELEKNLESLENSEVIDPDEAVTTTAPLYKQLLNAYAEEAATEDAIYY 372

Query: 391 MGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA 433
           +GEALR GVIDLE +LK VR LSRKQFM RA++ KC +    A
Sbjct: 373 LGEALRGGVIDLETFLKHVRHLSRKQFMLRAIMQKCRQKAGLA 415

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
FB|FBgn0036666	408	TSG101 "tumor suppressor prote	0.370	0.394	0.484	1.8e-64
ZFIN|ZDB-GENE-030217-1	390	tsg101 "tumor susceptibility g	0.375	0.417	0.506	8.8e-59
UNIPROTKB|E1BWW2	393	UEVLD "Uncharacterized protein	0.375	0.414	0.487	2e-57
UNIPROTKB|A3KN51	391	TSG101 "TSG101 protein" [Bos t	0.375	0.416	0.481	5.4e-57
UNIPROTKB|E2RGP6	391	TSG101 "Uncharacterized protei	0.375	0.416	0.481	6.9e-57
UNIPROTKB|Q99816	390	TSG101 "Tumor susceptibility g	0.375	0.417	0.487	2.9e-56
MGI|MGI:106581	391	Tsg101 "tumor susceptibility g	0.375	0.416	0.487	3.8e-56
RGD|3909	391	Tsg101 "tumor susceptibility g	0.375	0.416	0.487	6.1e-56
UNIPROTKB|F5H442	365	TSG101 "Tumor susceptibility g	0.327	0.389	0.468	2.3e-50
WB|WBGene00015658	425	tsg-101 [Caenorhabditis elegan	0.373	0.381	0.320	2.6e-39

FB|FBgn0036666 TSG101 "tumor suppressor protein 101" [Drosophila melanogaster (taxid:7227)]

 Score = 404 (147.3 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 78/161 (48%), Positives = 111/161 (68%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTIT+EHIK S+ SA++DK+RR++ E+  Q Q EIE L +T+ EL +G  K+  + ER++
Sbjct:   240 GTITEEHIKASIISAIDDKLRRRVQEKVNQYQAEIETLNRTKQELLEGSAKIDAIIERLE 299

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXXXXPIYKQILNTFTEEAATE 385
             +E  +++++IS LK+KE EL++ L  L                P+Y+Q+LN + +EAATE
Sbjct:   300 REHIDMQKNISILKDKEQELEKALEDLESAEAINPDEAVTTTAPLYRQLLNAYADEAATE 359

Query:   386 DTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKC 426
             D IYY+GE LR GVIDLE +LK VR LSRKQF+ RA + KC
Sbjct:   360 DAIYYLGEGLRGGVIDLETFLKHVRQLSRKQFILRATMQKC 400

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045571 "negative regulation of imaginal disc growth" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0007430 "terminal branching, open tracheal system" evidence=IMP

ZFIN|ZDB-GENE-030217-1 tsg101 "tumor susceptibility gene 101" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 83/164 (50%), Positives = 109/164 (66%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI ++ I+ SL SAV DK+R +M E+  +AQ E++ LK+TE +L +G  KL  M  R+D
Sbjct:   219 GTIGEDTIRASLISAVSDKLRWRMKEEMDRAQAELDALKRTEEDLKKGHQKLEDMVSRLD 278

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++R+I  LK+K+ EL E L  +                 P+YKQILN + EE A 
Sbjct:   279 QEVAEVDRNIELLKKKDEELSEALEKMENQSENNDIDDVIIPTAPLYKQILNRYAEENAI 338

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDLEV+LK VR LSRKQF  RAL+ K  K
Sbjct:   339 EDTIFYLGEALRRGVIDLEVFLKHVRLLSRKQFQLRALMQKARK 382

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BWW2 UEVLD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 374 (136.7 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 80/164 (48%), Positives = 108/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   222 GTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 281

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  LK+K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   282 QEVAEVDKNIELLKKKDEELSSALEKMESQSENNDIDEVIIPTAPLYKQILNLYAEENAI 341

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   342 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 385

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

UNIPROTKB|A3KN51 TSG101 "TSG101 protein" [Bos taurus (taxid:9913)]

 Score = 371 (135.7 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
 Identities = 79/164 (48%), Positives = 108/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   220 GTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVNRLD 279

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  L++K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   280 QEVAEVDKNIELLRKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 339

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   340 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|E2RGP6 TSG101 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 370 (135.3 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 79/164 (48%), Positives = 108/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   220 GTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 279

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  L++K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   280 QEVAEVDKNIELLRKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 339

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   340 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

GO:0015031 "protein transport" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|Q99816 TSG101 "Tumor susceptibility gene 101 protein" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
 Identities = 80/164 (48%), Positives = 108/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   219 GTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 278

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  LK+K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   279 QEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 338

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   339 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 382

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046755 "non-lytic virus budding" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0005771 "multivesicular body" evidence=TAS

GO:0043130 "ubiquitin binding" evidence=TAS

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IDA

GO:0010008 "endosome membrane" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0005770 "late endosome" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:106581 Tsg101 "tumor susceptibility gene 101" [Mus musculus (taxid:10090)]

 Score = 370 (135.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 80/164 (48%), Positives = 107/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+   AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   220 GTISEDTIRASLISAVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLD 279

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  LK+K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   280 QEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 339

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   340 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

GO:0001558 "regulation of cell growth" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IDA

GO:0030216 "keratinocyte differentiation" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046755 "non-lytic virus budding" evidence=ISO;IMP

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|3909 Tsg101 "tumor susceptibility gene 101" [Rattus norvegicus (taxid:10116)]

 Score = 370 (135.3 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 80/164 (48%), Positives = 107/164 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+   AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   220 GTISEDTIRASLISAVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLD 279

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  LK+K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   280 QEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 339

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
             EDTI+Y+GEALRRGVIDL+V+LK VR LSRKQF  RAL+ K  K
Sbjct:   340 EDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARK 383

GO:0001558 "regulation of cell growth" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=ISO

GO:0030216 "keratinocyte differentiation" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0031902 "late endosome membrane" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO;ISS

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F5H442 TSG101 "Tumor susceptibility gene 101 protein" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 67/143 (46%), Positives = 94/143 (65%)

Query:   266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
             GTI+++ I+ SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D
Sbjct:   219 GTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 278

Query:   326 KEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXX-XXPIYKQILNTFTEEAAT 384
             +E AE++++I  LK+K+ EL   L  +                 P+YKQILN + EE A 
Sbjct:   279 QEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAI 338

Query:   385 EDTIYYMGEALRRGVIDLEVYLK 407
             EDTI+Y+GEALRRGVIDL+V+LK
Sbjct:   339 EDTIFYLGEALRRGVIDLDVFLK 361

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00015658 tsg-101 [Caenorhabditis elegans (taxid:6239)]

 Score = 254 (94.5 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
 Identities = 52/162 (32%), Positives = 93/162 (57%)

Query:   265 GGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI 324
             GGTI  + I+ S+ SAVE+KIR K+ E+      E+  ++ T +EL +G+ KL RM E +
Sbjct:   256 GGTIQADTIRASVMSAVEEKIRAKLRERMGTNSAEMASIRTTSDELREGQQKLKRMLEEL 315

Query:   325 DKEKAELERSISFLKEKETELDEILAVLXXXXXXXXXXXXXXXXPIYKQILNTFTEEAAT 384
             + +++ L+ +      K+ EL + L+                  P+++QI+  + ++   
Sbjct:   316 ETQRSSLQTACEIYTAKKAELAKALSDAGGTDAPPIDEAIDAAFPLHRQIVLNYAKDLTC 375

Query:   385 EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKC 426
             +D IY +G++L++  I L  YL+ VR +SR+QF++RA + KC
Sbjct:   376 DDVIYSLGQSLKKRQITLAEYLRHVRDVSREQFIYRATMQKC 417

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000813 "ESCRT I complex" evidence=IPI

GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=IMP

GO:0032801 "receptor catabolic process" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99816	TS101_HUMAN	No assigned EC number	0.4303	0.6728	0.7487	yes	N/A
Q61187	TS101_MOUSE	No assigned EC number	0.4272	0.6751	0.7493	yes	N/A
Q6IRE4	TS101_RAT	No assigned EC number	0.4242	0.6751	0.7493	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	434
pfam05743	119	pfam05743, UEV, UEV domain	1e-29
pfam09454	65	pfam09454, Vps23_core, Vps23 core domain	8e-25
pfam05743	119	pfam05743, UEV, UEV domain	1e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-05
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
pfam12325	121	pfam12325, TMF_TATA_bd, TATA element modulatory fa	4e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-05
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam01540	353	pfam01540, Lipoprotein_7, Adhesin lipoprotein	2e-04
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
pfam11029	136	pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP	8e-04
pfam05483	787	pfam05483, SCP-1, Synaptonemal complex protein 1 (	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|203324 pfam05743, UEV, UEV domain

 Score =  111 bits (279), Expect = 1e-29
 Identities = 36/76 (47%), Positives = 48/76 (63%)

Query: 5   SGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSK 64
            G  Y+IP+ IWL DT+P   PIC+V+PT DM I V+ +VD  G++Y PYLH W   +S 
Sbjct: 44  RGNTYNIPILIWLPDTYPFSPPICFVKPTPDMVIKVNHHVDAQGRVYLPYLHNWNHPSSN 103

Query: 65  LEGLIKTLASAFSALP 80
           L  L++ LA  F   P
Sbjct: 104 LVDLVQELAQVFGEEP 119

This family includes the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other human malignancies. However, the involvement of this gene in neoplastic transformation and tumorigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but that this gene is not a tumour suppressor for sporadic forms of breast cancer. This family is related to the ubiquitin conjugating enzymes. Length = 119

>gnl|CDD|117992 pfam09454, Vps23_core, Vps23 core domain

 Score = 96.2 bits (240), Expect = 8e-25
 Identities = 35/65 (53%), Positives = 45/65 (69%)

Query: 361 DEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
           DEA+    P+  Q+L    E+ A EDTIYY+  AL+RG IDLE YLK VR L+R+QF+ R
Sbjct: 1   DEAIVAEDPLLNQLLELVAEDHAIEDTIYYLERALKRGKIDLETYLKHVRELAREQFLKR 60

Query: 421 ALLFK 425
           AL+ K
Sbjct: 61  ALIQK 65

ESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric ESCRT-I complex is a helical hairpin sandwiched in a fan-like formation between two other helical hairpins from Vps28 (pfam03997) and Vps37. Vps23 gives ESCRT-I complex its stability. Length = 65

>gnl|CDD|203324 pfam05743, UEV, UEV domain

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALP 151
           ++PT DM I V+ +VD  G++Y PYLH W   +S L  L++ LA  F   P
Sbjct: 69  VKPTPDMVIKVNHHVDAQGRVYLPYLHNWNHPSSNLVDLVQELAQVFGEEP 119

This family includes the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other human malignancies. However, the involvement of this gene in neoplastic transformation and tumorigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but that this gene is not a tumour suppressor for sporadic forms of breast cancer. This family is related to the ubiquitin conjugating enzymes. Length = 119

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 276 SLKSAVEDKIRR--KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 333
           SL+   E   +   ++ E+  + +E+++ L++   EL +   +L    E ++ EK ELE 
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877

Query: 334 SISFLKEKETELDEILAVLT---EKTEVDVDEAVT--TTAPIYKQILNTFTEEAATEDTI 388
            +  L+E++ EL+E L  L     + + ++++            + L     E   E   
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937

Query: 389 YY 390
            Y
Sbjct: 938 EY 939

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 271 EHIKMSLKSAVEDKIR-----RKMNEQKVQAQEEIEILKQTENELN-------QGKFKLA 318
           + ++  L+   E+  R      ++ E+  +A++EIE LK    EL        +   +L 
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 319 RMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV---------DVDEAVTTTAP 369
              E ++ E + L   +  L+ +  EL+E L  L EK E           + E +     
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 370 IYKQILNTFTEEAAT-EDTIYYMGEALRRGVIDLEVYLKQVR 410
             ++      E+ +   + +  + EALR  + +LE  L ++R
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
           E IK       +++I +  NE + + +E    L++ E  L Q +  L R  E ++K + E
Sbjct: 52  EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111

Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDVDE----AVTTTAPIYKQILNTFTEEAATE 385
           LE+    L++K+ EL++    L E  E  + E    +  T     + +L    EEA  E
Sbjct: 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHE 170

Length = 520

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNV---NTPYPTYPPSA----- 202
           P   ++     P  NP  +    SN P     Y  +P SN    N P    PPS+     
Sbjct: 422 PGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHH 481

Query: 203 ---YPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYP----PGGSTPATPYPVPT 255
              +  Y   AA  P+ ++ P+   P A    G        P    P GS P       T
Sbjct: 482 SAYHAAYQHRAANQPAANL-PTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATT 540

Query: 256 PSPA--------PAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTE 307
             P         P   +     ++  + S++S+  +      NE   + +E   +LK+T 
Sbjct: 541 ADPNGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTI 600

Query: 308 NELNQGK 314
           N ++  K
Sbjct: 601 NRIDMNK 607

Length = 1560

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID 325
           G    E  +  L    E ++     E+++  ++E   L++   EL +   +L      + 
Sbjct: 464 GQELPEEHEKELLELYELELEEL--EEELSREKEEAELREEIEELEKELRELEEELIELL 521

Query: 326 KEKAELERSISFLKEKETELDEILAVLTEKTEVD 359
           + +  L+  +    EK   L E L  L EK ++ 
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQ 555

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
            DK   +  ++    +E++E LK+  NEL +   +L    +R+ +E A+L  +I+ ++ K
Sbjct: 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435

Query: 342 ETELDEILAVLTEKTEVDVDEAVTTTA---PIYKQILNTFTEEAATEDTIYYMGEALRRG 398
             EL+E       + +    +     A      +++ +   E    E  +      L+R 
Sbjct: 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL----SKLQRE 491

Query: 399 VIDLEVYLKQVRSLSRKQFMFRA 421
           + + E    Q R+   +    RA
Sbjct: 492 LAEAE---AQARASEERVRGGRA 511

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 285 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 344
           +RR   E     ++E+  L+   +E  Q   KL    E + + K E+E     L++ E  
Sbjct: 26  LRRLEGE-LASLKDELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQR 84

Query: 345 LDEILAVLTEKTE 357
            +  L +L EK+E
Sbjct: 85  YETTLELLGEKSE 97

This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family. Length = 121

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 160 QEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIY 219
           ++     T + N          S  P    + +   P++P       +P+ ++ P     
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP---A 215

Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPY---------PVPTPSPA---PAVTSGGT 267
           PS       P +      P  PPG + P  P            PTP  A   PA   G T
Sbjct: 216 PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT 275

Query: 268 ITDEHIKMSLKSA 280
           + D+ I  + K A
Sbjct: 276 LDDDAIAKAQKHA 288

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 37/154 (24%), Positives = 50/154 (32%), Gaps = 20/154 (12%)

Query: 162 PATNPTYNGNMASNAPYPTQSYMPMPGSN---VNTPYPTYPPSAYPGYNPNAAAAPSGSI 218
             +NP YN    SN PY        P SN    N PY   P S  P  N   + AP  S 
Sbjct: 418 GNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSA 477

Query: 219 --YPS-YPT----------PGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSG 265
             + S Y                P A   +    +   G++   P+       AP   + 
Sbjct: 478 KDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNA 537

Query: 266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEE 299
            T  D     +  +  ED      N QK +  +E
Sbjct: 538 ATTADP----NGIAKREDHPEGGTNRQKYEQSDE 567

Length = 1560

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345
             ++ E+  + Q+E+  L    + L Q K  L      ++++  ELE  +  L+ K  EL
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335

Query: 346 DEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVY 405
            E LA L EK E              + +     E  A         E L   + +LE  
Sbjct: 336 AEELAELEEKLEE--------LKEELESLEAELEELEAEL-------EELESRLEELE-- 378

Query: 406 LKQVRSLSRKQF 417
            +Q+ +L  K  
Sbjct: 379 -EQLETLRSKVA 389

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|110537 pfam01540, Lipoprotein_7, Adhesin lipoprotein

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 260 PAVTSGGTITDEHIKMSLKSAVEDK---IRRKMNEQKVQAQEEIEILKQTENE------- 309
           PA+ S  +   E+ K + K A++DK   I +++ E+  + Q  IE LK+  NE       
Sbjct: 89  PAIISKLSAAVENAK-NEKKAIDDKNAQIAKELAERNAKIQSNIEELKKINNEAFELSKT 147

Query: 310 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAP 369
           +N+   ++ + F+     K +LE     L +K  ++DE   V + +    + E  +    
Sbjct: 148 VNKTIAEVEKKFKIPKDFKEQLENFADDLLDKSRQIDEFTTVTSTQEGFTLAELES---- 203

Query: 370 IYKQILNTFTEEAATE 385
            +K+I  T+     +E
Sbjct: 204 -FKEITTTWFNGMKSE 218

This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50-kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host. p50 is also a 50-kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191-kDa in its native environment. Length = 353

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 23/114 (20%)

Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQG-----KF------KLARMFERIDKEKA-- 329
           D  R +   ++   ++  E L++ E EL +      KF      K  R  ++ ++EK   
Sbjct: 17  DAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLR 76

Query: 330 -ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA 382
            E E  I  LK +  EL   +    EK E  ++E        Y++ L +  E +
Sbjct: 77  KEKEEEIKELKAELEELKAEI----EKLEEKLEEYQ-----PYEEFLESVVERS 121

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 269 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 328
             E +++      E+++R      + + +E+IE L++ E E+ +    L    E +    
Sbjct: 260 EIESLELEALKIREEELRELERLLE-ELEEKIERLEELEREIEE----LEEELEGLRALL 314

Query: 329 AELERSISFLKEKETELDEI---LAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATE 385
            ELE  +  LK  E  L+++   L  L  + E ++ E     A + ++ L    E     
Sbjct: 315 EELEELLEKLKSLEERLEKLEEKLEKLESELE-ELAEEKNELAKLLEERLKELEER---L 370

Query: 386 DTIYYMGEALRRGVIDLEVYLKQVRS 411
           + +    E     +  LE  +++++ 
Sbjct: 371 EELEKELEKALERLKQLEEAIQELKE 396

Length = 908

>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2)

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 27/99 (27%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 147 FSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGY 206
           +   PP YS   +      P      AS        Y+PM       P  ++PP AY   
Sbjct: 1   YPDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMAYYPI 60

Query: 207 NPNAAAAPSGSIYPSYPT--PGATPGAGGYSPYPLYPPG 243
                  P GS          GA  G G  S  P  PPG
Sbjct: 61  GAPPPVYPPGSTVLVQGGFDAGARFGPGTGSSIPPPPPG 99

DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats. Length = 136

>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1)

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357
           EE+   +Q   E N+ + K+  M   + K+ +ELE    F   KE EL+E+  +L E  +
Sbjct: 362 EELLRTEQQRLEKNEDQLKIITM--ELQKKSSELEEMTKFKNNKEVELEELKKILAEDEK 419

Query: 358 VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEV-----------YL 406
           + +DE         KQ      E    E  + ++ +A  + + DLE+           YL
Sbjct: 420 L-LDEK--------KQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYL 470

Query: 407 KQVRSL 412
           K+V  L
Sbjct: 471 KEVEDL 476

Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase. Length = 787

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 34/158 (21%), Positives = 49/158 (31%), Gaps = 15/158 (9%)

Query: 144 ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY 203
           A A +A     ++                A+ AP       P P      P P     A 
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAA-PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAG 451

Query: 204 PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTP-SPAPAV 262
              +P  AAAPS       P P         +P P   P  + PA P P   P +PA   
Sbjct: 452 GAPSPPPAAAPSAQ-----PAPAPAA-----APEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 263 TSGGTITDEHIKMS---LKSAVEDKIRRKMNEQKVQAQ 297
              G      ++     + +AV  + R+       +A 
Sbjct: 502 APAGADDAATLRERWPEILAAVPKRSRKTWAILLPEAT 539

Length = 824

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 284 KIRRKMNEQKVQA--------QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
           K + K  E++++         +EE+E L+    +L      L +  + ++ +  ELER I
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905

Query: 336 SFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395
             L+ +  +  + L+ L  K E   +E ++       +      EE + ED +    + +
Sbjct: 906 EELEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEELSLED-VQAELQRV 963

Query: 396 RRGVIDLE 403
              +  LE
Sbjct: 964 EEEIRALE 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 170 GNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATP 229
             +A  A  P  +      +    P     P+A       A A  +       P P   P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAA---APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP 441

Query: 230 GAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
            +   +      P     A P   P P+PA A     
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTA 478

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 144  ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPM---PGSNVNTPYPTYPP 200
            A+A  A P L ++         P   G  A  A  PT +  P    P +    P      
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

Query: 201  SAYPGYNPNAAAAPSGSIYPSYPTPGATPGAG---GYSPYPLYPPGGSTPATPYPVPTPS 257
             A    + +  + PS       P     P A      SP    PP  S   T  P P   
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

Query: 258  PAPAVTSGGTI 268
            P P++  GG++
Sbjct: 2846 PPPSLPLGGSV 2856

Length = 3151

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 275 MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERS 334
           +  +    +    ++  +  + +E++E L+    +L      L    ER++     LE  
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

Query: 335 ISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394
              L++      EI  +L +  E ++ E       + +++     E    E+ +  + E 
Sbjct: 416 RERLQQ------EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469

Query: 395 LRRGVIDLEVYLKQVRSLSRKQFMFRALL 423
           L      L+   +++  L  +      L 
Sbjct: 470 LEEAEQALDAAERELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
           E    +     ++ + R+ N+Q+ +A+ E E L++ E  L Q + +L    E++D  + +
Sbjct: 47  EEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQ 106

Query: 331 LERSISFLKEKETELDE-------------------ILAVLTEKTEVDVDEAVTTTAPIY 371
           LE     L  +E EL+E                      +L +  + +++E         
Sbjct: 107 LEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQ---RV 163

Query: 372 KQILNTFTEEAATEDTIYYMGEALRR 397
           K+I      E A       + +A++R
Sbjct: 164 KKIEEEADLE-AERKAQNILAQAMQR 188

Length = 508

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 37/160 (23%), Positives = 50/160 (31%), Gaps = 24/160 (15%)

Query: 179 PTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP-- 236
           P+ S    P S      PT      PG       AP+  + PS   P     +   SP  
Sbjct: 381 PSGSAAEGPASGGAATIPT------PGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRV 434

Query: 237 ----YPLYPPGGSTPATPYP-VPTPSPAP----AVTSGGTITDEHIKMSLKSAVEDKIRR 287
                P  PP    P  P P +P  SP P    +V S           S  +       R
Sbjct: 435 PWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPR 494

Query: 288 KMN-------EQKVQAQEEIEILKQTENELNQGKFKLARM 320
             +        +  Q      +L+Q   E   G+ +LA M
Sbjct: 495 TWDGFLEFCQGRNGQGGRLATVLRQATPEHADGRLRLATM 534

Length = 624

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 204 PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP-AV 262
               P+AAAA S S   S      +       P    P     P    PV  PS AP AV
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

Query: 263 TSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEI 300
                  ++ I +S  S++     R + E+  QA   I
Sbjct: 448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNI 485

Length = 614

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 191 VNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPA-T 249
              P P  PP+A       AAAA + +  P+  +P     A         P G   PA  
Sbjct: 394 AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453

Query: 250 PYPVPTPSPAPAVTS 264
           P   P  +  PA   
Sbjct: 454 PAAAPAAAARPAAAG 468

Length = 700

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
            L++ +E+    K   Q  Q +EE+  L+    EL +   +L  +  R ++ + EL   +
Sbjct: 537 KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELE-ELRERL 595

Query: 336 SFLKEKETELDEILAVL-TEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394
             LK+K  EL+E L+ L      +++ EA        ++       E    +    + E 
Sbjct: 596 KELKKKLKELEERLSQLEELLQSLELSEAENEL----EEAEEELESELEKLNLQAELEEL 651

Query: 395 LRRGVIDLEVYLKQVRSLSRK 415
           L+  + +LE  ++++ +  R+
Sbjct: 652 LQAALEELEEKVEELEAEIRR 672

Length = 908

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 30/137 (21%)

Query: 290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA----ELERS--ISFLKEKET 343
           ++   + +  +E LK+   EL Q   +L     +I+K K       ER+  +  LK+ E 
Sbjct: 61  SQALNKLKTRLEKLKKELEELKQRIAELQ---AQIEKLKKGREETEERTELLEELKQLEK 117

Query: 344 ELDEILAVLTEKTEVD---VDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVI 400
           EL ++ A L +  + D   +++    T  + K+  N +T      D I+           
Sbjct: 118 ELKKLKAELEKYEKNDPERIEKLKEET-KVAKEAANRWT------DNIF----------- 159

Query: 401 DLEVYLKQVRSLSRKQF 417
            L+ YL +   L   Q 
Sbjct: 160 SLKSYLSKKFGLDEAQL 176

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 18/94 (19%), Positives = 43/94 (45%)

Query: 288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
           ++  +K + ++E++ L++ + EL +   +L      + +E  +L   +  L+ K   L+ 
Sbjct: 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV 926

Query: 348 ILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEE 381
            L  L E+ E + ++ + T      + L    E 
Sbjct: 927 ELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 271 EHIKMSLKSAVEDKIRRKM-----NEQKVQAQEEIEILKQTENELNQGKFKLARMF---- 321
           E ++  L+S  E   + K       E++   QEE+E L++   E  +    L R      
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 322 ---ERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357
              ER+++E  ELE  I  L+EK  EL+E L  L ++ E
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG2391|consensus	365		100.0
KOG2391|consensus	365		99.96
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	99.96
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	99.95
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	99.43
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	98.45
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	98.06
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	97.5
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	97.49
PLN00172	147	ubiquitin conjugating enzyme; Provisional	97.46
KOG0819|consensus	321		97.39
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	96.02
KOG0424|consensus	158		95.25
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	95.14
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	94.96
KOG0895|consensus	1101		94.82
KOG1924|consensus	1102		94.35
KOG1924|consensus	1102		94.15
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	94.13
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	94.13
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	93.96
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.86
KOG0971|consensus	1243		93.59
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.42
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.3
PRK10884	206	SH3 domain-containing protein; Provisional	92.92
PRK11637	428	AmiB activator; Provisional	92.55
KOG0427|consensus	161		92.52
PRK11637	428	AmiB activator; Provisional	92.47
COG4026	290	Uncharacterized protein containing TOPRIM domain,	92.4
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.1
KOG0417|consensus	148		92.04
KOG0422|consensus	153		91.88
KOG4657|consensus	246		91.71
KOG0976|consensus	1265		91.36
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	91.26
KOG0419|consensus	152		91.13
PRK04778	569	septation ring formation regulator EzrA; Provision	91.09
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.71
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	90.63
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.48
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.45
KOG0933|consensus	1174		90.17
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.13
KOG1853|consensus	333		90.07
KOG0994|consensus	1758		89.37
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.33
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.19
PHA02562	562	46 endonuclease subunit; Provisional	88.63
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	88.62
KOG3091|consensus	508		88.62
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.59
KOG0420|consensus	184		88.57
TIGR01541	332	tape_meas_lam_C phage tail tape measure protein, l	88.38
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	88.37
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.23
TIGR00996	291	Mtu_fam_mce virulence factor Mce family protein. M	88.19
COG1463	359	Ttg2C ABC-type transport system involved in resist	88.17
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.1
PF11985	180	DUF3486: Protein of unknown function (DUF3486); In	88.09
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	88.06
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	87.77
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	87.61
COG5185	622	HEC1 Protein involved in chromosome segregation, i	87.51
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	87.4
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	87.01
KOG0421|consensus	175		86.98
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.86
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	86.81
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	86.6
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.47
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.42
PRK12704	520	phosphodiesterase; Provisional	86.26
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.2
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	86.06
PF11887	267	DUF3407: Protein of unknown function (DUF3407); In	85.93
PRK14140	191	heat shock protein GrpE; Provisional	85.88
TIGR00996	291	Mtu_fam_mce virulence factor Mce family protein. M	85.78
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.77
KOG1655|consensus	218		85.74
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.72
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.64
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.57
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.56
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	85.49
PRK00106	535	hypothetical protein; Provisional	85.38
KOG0995|consensus	581		85.17
PRK10803	263	tol-pal system protein YbgF; Provisional	84.98
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	84.86
PRK10884	206	SH3 domain-containing protein; Provisional	84.81
PRK15422	79	septal ring assembly protein ZapB; Provisional	84.77
COG0576	193	GrpE Molecular chaperone GrpE (heat shock protein)	84.7
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.69
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.43
PRK14161	178	heat shock protein GrpE; Provisional	84.31
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.3
PRK09039	343	hypothetical protein; Validated	84.29
PF10475	291	DUF2450: Protein of unknown function N-terminal do	84.23
KOG4460|consensus	741		84.22
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	84.19
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	84.04
KOG0994|consensus	1758		84.02
PF10018	188	Med4: Vitamin-D-receptor interacting Mediator subu	83.95
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.91
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	83.71
PRK11519	719	tyrosine kinase; Provisional	83.68
KOG4657|consensus	246		83.63
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.57
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	83.57
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	83.55
COG1463	359	Ttg2C ABC-type transport system involved in resist	83.51
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.47
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	83.27
PRK12704	520	phosphodiesterase; Provisional	83.24
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	83.16
KOG0250|consensus	1074		83.04
KOG2264|consensus	907		82.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.75
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	82.71
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	82.64
PRK00409	782	recombination and DNA strand exchange inhibitor pr	82.57
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	82.48
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	82.43
PRK10361	475	DNA recombination protein RmuC; Provisional	82.26
PF15079	205	DUF4546: Domain of unknown function (DUF4546)	82.25
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	82.23
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.02
PRK14143	238	heat shock protein GrpE; Provisional	81.92
PF07464	155	ApoLp-III: Apolipophorin-III precursor (apoLp-III)	81.91
PHA02562	562	46 endonuclease subunit; Provisional	81.77
KOG4360|consensus	596		81.77
PRK14143	238	heat shock protein GrpE; Provisional	81.72
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	81.61
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	81.59
PRK10698	222	phage shock protein PspA; Provisional	81.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	81.54
PF08376	247	NIT: Nitrate and nitrite sensing; InterPro: IPR013	81.26
PRK03947	140	prefoldin subunit alpha; Reviewed	81.1
KOG0982|consensus	502		81.04
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	80.88
PRK09039	343	hypothetical protein; Validated	80.84
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	80.83
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	80.65
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.6
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	80.42
KOG0993|consensus	542		80.21
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	80.15
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	80.15
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	80.14

>KOG2391|consensus

Probab=100.00  E-value=4.9e-72  Score=541.62  Aligned_cols=304  Identities=43%  Similarity=0.706  Sum_probs=246.8

Q ss_pred             eeecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020          2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPP   81 (434)
Q Consensus         2 v~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~~pP   81 (434)
                      |.|+|++|||||+|||+++||+.||+|||+||++|.||.+.|||+||+|||||||+|.+++|||++||++|+..|+++||
T Consensus        61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP  140 (365)
T KOG2391|consen   61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPP  140 (365)
T ss_pred             ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCCCCCCCCCC
Q psy18020         82 LYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQE  161 (434)
Q Consensus        82 l~~~~~~~~p~~~p~~~~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~~s~~~~~~  161 (434)
                      +|+++..+.|.+.|                                                                  
T Consensus       141 ~ys~~~~~~p~p~p------------------------------------------------------------------  154 (365)
T KOG2391|consen  141 VYSRSLPSPPPPYP------------------------------------------------------------------  154 (365)
T ss_pred             cccCCCCCCCCCCC------------------------------------------------------------------
Confidence            99987332211111                                                                  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy18020        162 PATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYP  241 (434)
Q Consensus       162 ~~~~~~~~~~~~s~~p~~~~~~~~~p~~~~~~p~p~~p~~~~~~~~p~~~~~~~~~~~~pyp~~~~~~~~~~~~p~p~~p  241 (434)
                                        ++.++.++..                       ..+...++|+|++++++|.+ +.||+-.+
T Consensus       155 ------------------~~~~~~~p~~-----------------------p~~~~~~~p~p~p~~~~gas-~~~~~~~d  192 (365)
T KOG2391|consen  155 ------------------QTEYNTPPLK-----------------------PKGSAYKPPLPPPPPPGGAS-ALPYMTDD  192 (365)
T ss_pred             ------------------cccCCCCCCC-----------------------CCCcCcCCCCCCCCCCCccc-cCcccCCC
Confidence                              0000000000                       00001122233221111110 11111000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy18020        242 PGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMF  321 (434)
Q Consensus       242 ~~~~~~~~~~p~~~~~~~p~p~~~~~~~~e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~  321 (434)
                      .     ..+||            .+..+...+++++.+++.++|+++..|.+.+.+++++.|+++++||+.|+.+|+.++
T Consensus       193 ~-----~~~yp------------~n~~~~~~irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~  255 (365)
T KOG2391|consen  193 N-----AEPYP------------PNASGKLVIRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMK  255 (365)
T ss_pred             C-----CCcCC------------CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence            0     00111            011122338999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy18020        322 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVID  401 (434)
Q Consensus       322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~  401 (434)
                      ++||.+...|+.+++.|+++.+|   +++++++.+++|||++|++++++++|+++++|+|.||||+||+|+++|++|+|+
T Consensus       256 etLEqq~~~L~~niDIL~~k~~e---al~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~  332 (365)
T KOG2391|consen  256 ETLEQQLQSLQKNIDILKSKVRE---ALEKAENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVID  332 (365)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHH---HHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeee
Confidence            99999999999999999999888   777888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy18020        402 LEVYLKQVRSLSRKQFMFRALLFKCYKHISYA  433 (434)
Q Consensus       402 ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~l~  433 (434)
                      ||.|||+||.||||||++||+++|||+.+||+
T Consensus       333 l~~yLr~VR~lsReQF~~rat~qk~r~~~~l~  364 (365)
T KOG2391|consen  333 LDQYLRHVRLLSREQFILRATMQKCRQTAGLA  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999986

>KOG2391|consensus

Probab=99.96  E-value=1.9e-28  Score=238.45  Aligned_cols=202  Identities=28%  Similarity=0.438  Sum_probs=143.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCC
Q psy18020         88 KQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPT  167 (434)
Q Consensus        88 ~~~p~~~p~~~~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~~s~~~~~~~~~~~~  167 (434)
                      +..|+.+|+  |||+||++|.||+++|||+||+|||||||+|.+++|||+||||+|++.|+++||+||++.++       
T Consensus        78 dtyP~~pP~--c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~~-------  148 (365)
T KOG2391|consen   78 DTYPYYPPI--CYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLPS-------  148 (365)
T ss_pred             ccCCCCCCe--EEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCccccCCCCC-------
Confidence            456666777  99999999999999999999999999999999999999999999999999999999954310       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy18020        168 YNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTP  247 (434)
Q Consensus       168 ~~~~~~s~~p~~~~~~~~~p~~~~~~p~p~~p~~~~~~~~p~~~~~~~~~~~~pyp~~~~~~~~~~~~p~p~~p~~~~~~  247 (434)
                                                +++++++..+               .+|.+   ...++..++|.|+.+++++. 
T Consensus       149 --------------------------~p~p~p~~~~---------------~~~p~---~p~~~~~~~p~p~p~~~~ga-  183 (365)
T KOG2391|consen  149 --------------------------PPPPYPQTEY---------------NTPPL---KPKGSAYKPPLPPPPPPGGA-  183 (365)
T ss_pred             --------------------------CCCCCCcccC---------------CCCCC---CCCCcCcCCCCCCCCCCCcc-
Confidence                                      1112222110               01111   11122223333322121111 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy18020        248 ATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKE  327 (434)
Q Consensus       248 ~~~~p~~~~~~~p~p~~~~~~~~e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~  327 (434)
                        .+++.+..    +..+.......-+.-+++.|.+.++.++++   +.+++++++.+.|++|+++++.|+...++|+++
T Consensus       184 --s~~~~~~~----d~~~~yp~n~~~~~~irasvisa~~eklR~---r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~  254 (365)
T KOG2391|consen  184 --SALPYMTD----DNAEPYPPNASGKLVIRASVISAVREKLRR---RREEEMERLQAEQESLKRTEEELNIGKQKLVAM  254 (365)
T ss_pred             --ccCcccCC----CCCCcCCCCcccccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Confidence              11111110    111122222333445677888888888754   456899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        328 KAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       328 k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ++.||+....|++.++-|.+|++++
T Consensus       255 ~etLEqq~~~L~~niDIL~~k~~ea  279 (365)
T KOG2391|consen  255 KETLEQQLQSLQKNIDILKSKVREA  279 (365)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999974

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=99.96  E-value=7e-29  Score=191.24  Aligned_cols=65  Identities=52%  Similarity=0.824  Sum_probs=62.3

Q ss_pred             cccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        361 DEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFK  425 (434)
Q Consensus       361 De~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~K  425 (434)
                      |++|+++++++||||+++|||+|||||||+|++||++|+|++|+|||+||.|||||||+||||+|
T Consensus         1 D~~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral~~K   65 (65)
T PF09454_consen    1 DEIVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRALIQK   65 (65)
T ss_dssp             GGTEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999999999998

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=99.95  E-value=5.7e-29  Score=215.77  Aligned_cols=81  Identities=46%  Similarity=0.940  Sum_probs=71.9

Q ss_pred             eeecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020          2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPP   81 (434)
Q Consensus         2 v~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~~pP   81 (434)
                      |.|+|++|||||+|||+++||+.||+|||+||.+|.|++|+|||++|+||+|||++|+.++|||++||++|+++|+++||
T Consensus        41 i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~F~~~pP  120 (121)
T PF05743_consen   41 ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAVFSEEPP  120 (121)
T ss_dssp             ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHCCCHS-S
T ss_pred             cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHHHHHHHHHHHhHcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q psy18020         82 L   82 (434)
Q Consensus        82 l   82 (434)
                      |
T Consensus       121 l  121 (121)
T PF05743_consen  121 L  121 (121)
T ss_dssp             E
T ss_pred             C
Confidence            7

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=99.43  E-value=2.1e-14  Score=124.76  Aligned_cols=55  Identities=42%  Similarity=0.797  Sum_probs=47.1

Q ss_pred             CCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCC
Q psy18020         99 GNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPL  153 (434)
Q Consensus        99 ~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~  153 (434)
                      |||+||++|.|+.+.+||++|+||+|||++|..++|+|.+|+++|+..|+++||+
T Consensus        67 v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~F~~~pPl  121 (121)
T PF05743_consen   67 VYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAVFSEEPPL  121 (121)
T ss_dssp             EEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHCCCHS-SE
T ss_pred             EEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHHHHHHHHHHHhHcCCC
Confidence            8999999999999999999999999999999999999999999999999999996

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=98.45  E-value=3.7e-07  Score=81.53  Aligned_cols=67  Identities=24%  Similarity=0.386  Sum_probs=58.2

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|.+|  .+.||++++||++||.|++...     .-+++||.+|.|++++|.  +|++ ..+|.+++..+...|.+
T Consensus        43 y~g~~f--~~~l~~p~~yP~~pP~v~f~~~-----i~Hp~i~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~~  111 (145)
T smart00212       43 YEGGIF--KLTIEFPPDYPFKPPKVKFITK-----IYHPNVDSSGEICLDILKQEKWSP-ATTLETVLLSIQSLLSE  111 (145)
T ss_pred             cCCcEE--EEEEECCcccCCCCCEEEEeCC-----ceEeeECCCCCEehhhcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            556554  8999999999999999998653     336889999999999998  8996 69999999999999976

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=98.06  E-value=8e-06  Score=72.60  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=54.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc--ccCCCCCHHHHHHHHHHHhC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT--WTPQNSKLEGLIKTLASAFS   77 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~--W~~~~s~L~~li~~l~~~F~   77 (434)
                      |.|..  +.+.|+++++||++||.|.+..     ..-+++||.+|.|++.+|..  |.+ ..+|.+++..+...|.
T Consensus        43 y~g~~--~~~~~~~p~~yP~~pP~v~f~~-----~i~HpnV~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~  110 (141)
T cd00195          43 YEGGI--FKLDIEFPEDYPFKPPKVRFVT-----KIYHPNVDENGKICLSILKTHGWSP-AYTLRTVLLSLQSLLN  110 (141)
T ss_pred             ccCCE--EEEEEECCCccCCCCCeEEEeC-----CcccCCCCCCCCCchhhcCCCCcCC-cCcHHHHHHHHHHHHh
Confidence            44444  4569999999999999998862     12468999999999999987  766 7789999999999997

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=97.50  E-value=0.00026  Score=64.01  Aligned_cols=63  Identities=22%  Similarity=0.412  Sum_probs=51.2

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      ...+.|.++++||+.||.|... |.   | =+++||.+|.|++..| ++|.+ ..++.+++..+...|..
T Consensus        50 ~f~~~i~~p~~YP~~pP~v~F~-t~---i-~HPNV~~~G~iCl~iL~~~W~p-~~ti~~iL~~i~~ll~~  113 (152)
T PTZ00390         50 YYKLELFLPEQYPMEPPKVRFL-TK---I-YHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA  113 (152)
T ss_pred             EEEEEEECccccCCCCCEEEEe-cC---C-eeceECCCCeEECccCcccCCC-CCcHHHHHHHHHHHHhC
Confidence            4568899999999999998663 32   1 2578999999999999 67987 78999999888887753

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=97.49  E-value=0.00018  Score=63.77  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=48.5

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHh
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F   76 (434)
                      .+-+.|.++++||+.||.|....     ..-+++||.+|+|++..|+  +|.+ ..++..++..+...|
T Consensus        46 ~f~~~i~~p~~YP~~pP~v~f~t-----~i~HPni~~~G~icl~~l~~~~W~p-~~~i~~il~~i~~ll  108 (140)
T PF00179_consen   46 IFKFRISFPPDYPFSPPKVRFLT-----PIFHPNIDENGRICLDILNPESWSP-SYTIESILLSIQSLL  108 (140)
T ss_dssp             EEEEEEEETTTTTTS--EEEESS-----S-SBTTB-TTSBBGHGGGTTTTC-T-TSHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccc-----ccccccccccccchhhhhhcccCCc-ccccccHHHHHHHHH
Confidence            45789999999999999998752     2346899999999999998  4877 899999999999888

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=97.46  E-value=0.00027  Score=63.49  Aligned_cols=67  Identities=21%  Similarity=0.362  Sum_probs=53.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.++++||+.||.|... |.   | -+++||.+|.|++..| ++|.+ ..+|.+++..+...|..
T Consensus        45 yegg~--f~~~i~fp~~YP~~pP~v~f~-t~---i-~HPNv~~~G~iCl~il~~~W~p-~~ti~~il~~i~~ll~~  112 (147)
T PLN00172         45 YAGGV--FFLSILFPPDYPFKPPKVQFT-TK---I-YHPNINSNGSICLDILRDQWSP-ALTVSKVLLSISSLLTD  112 (147)
T ss_pred             CCCCE--EEEEEECCcccCCCCCEEEEe-cC---c-ccceECCCCEEEcccCcCCCCC-cCcHHHHHHHHHHHHhC
Confidence            44544  468889999999999998663 32   2 2577999999999999 68987 78899999888887754

>KOG0819|consensus

Probab=97.39  E-value=0.00014  Score=72.30  Aligned_cols=136  Identities=21%  Similarity=0.248  Sum_probs=114.4

Q ss_pred             chHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHH
Q psy18020        270 DEHIKMSLK------SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSI  335 (434)
Q Consensus       270 ~e~~r~sl~------sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i  335 (434)
                      -+.++.+++      .+|++.|..|-+++++.+.+..+.      +..++.||...+++  +..+..--+....+|++.+
T Consensus        22 Ae~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~am  101 (321)
T KOG0819|consen   22 AEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAM  101 (321)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHH
Confidence            456677776      588899999999999999888876      77899999998888  5777788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh---------cCCCCHHHHH
Q psy18020        336 SFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR---------RGVIDLEVYL  406 (434)
Q Consensus       336 ~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~---------~g~I~ld~fl  406 (434)
                      ++++++++.|.+++|...+.+...+..       +|...|..-.||.-..||..++.|+|-         .+.||-+.--
T Consensus       102 kg~gtde~vlIEIlcTRT~~el~~i~~-------aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~  174 (321)
T KOG0819|consen  102 KGLGTDEKVLIEILCTRTNEELRAIRQ-------AYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAK  174 (321)
T ss_pred             hccCcchhhheeeeccCCHHHHHHHHH-------HHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHH
Confidence            999999999999999988887777777       999999999999999999999999983         1256655554


Q ss_pred             HHHHHH
Q psy18020        407 KQVRSL  412 (434)
Q Consensus       407 K~vR~L  412 (434)
                      ..++.|
T Consensus       175 ~dA~~L  180 (321)
T KOG0819|consen  175 QDAQDL  180 (321)
T ss_pred             HHHHHH
Confidence            555544

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=96.02  E-value=0.083  Score=47.29  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=34.3

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFK  425 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~K  425 (434)
                      +.+.|-..+++-..-.|.|   .+.|-.|.|++|.||++-+..=+.-.+-|+-..|
T Consensus        97 l~~~L~~~~~e~eeeSe~l---ae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~Ek  149 (150)
T PF07200_consen   97 LLARLQAAASEAEEESEEL---AEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEK  149 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---C-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            7777777776665555554   6677789999999999988765555555544444

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>KOG0424|consensus

Probab=95.25  E-value=0.036  Score=49.05  Aligned_cols=59  Identities=19%  Similarity=0.453  Sum_probs=45.2

Q ss_pred             ceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHh
Q psy18020         12 PVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        12 Pi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F   76 (434)
                      +|.+=++++||..||.|-..+.-     =.++|+++|.|+|-.|.+   |.+ .-+|-+++--+++..
T Consensus        59 ~l~v~F~~dyP~~PPkckF~~pl-----~HPNVypsgtVcLsiL~e~~~W~p-aitikqiL~gIqdLL  120 (158)
T KOG0424|consen   59 KLTVNFPDDYPSSPPKCKFKPPL-----FHPNVYPSGTVCLSILNEEKDWRP-AITIKQILLGIQDLL  120 (158)
T ss_pred             EEEEeCCccCCCCCCccccCCCC-----cCCCcCCCCcEehhhhccccCCCc-hhhHHHHHHHHHHHh
Confidence            56777899999999999554321     147899999999999964   876 667777777766644

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=95.14  E-value=0.36  Score=40.83  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        287 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       287 ~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ..++..+..++.++|.+..-+.+|...++.|+..+..|+.......+.+..|+.+++++.+.++.-
T Consensus        12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e   77 (107)
T PF09304_consen   12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE   77 (107)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555567788899999999999999999999999999999999999999999999998887753

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.044  Score=49.61  Aligned_cols=67  Identities=21%  Similarity=0.377  Sum_probs=51.1

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|.  +.|=+|++||+.||.|-....     .=.++||.+|+|++-.|+ +|++ .-+|...+-.|+..|.+
T Consensus        50 Yegg~f~--~~l~fP~~YP~~PPkv~F~t~-----i~HPNV~~~G~vCLdIL~~~WsP-~~~l~sILlsl~slL~~  117 (153)
T COG5078          50 YEGGIFK--LTLEFPEDYPFKPPKVRFTTK-----IFHPNVDPSGNVCLDILKDRWSP-VYTLETILLSLQSLLLS  117 (153)
T ss_pred             cCCCEEE--EEEECCCCCCCCCCeeeeccC-----CcCCCcCCCCCChhHHHhCCCCc-cccHHHHHHHHHHHHcC
Confidence            5566654  577899999999999743211     113789999999987665 6875 88999999999888876

>KOG0895|consensus

Probab=94.82  E-value=0.044  Score=62.13  Aligned_cols=73  Identities=14%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccC-------CCCCHHHHHHHHHHHhCCCCCcc
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTP-------QNSKLEGLIKTLASAFSALPPLY   83 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~-------~~s~L~~li~~l~~~F~~~pPl~   83 (434)
                      +=+.|.+|.+||.+||+||..-+.   +|-|++...+|||++-.|..|..       +.|++++++-.++...-.+=|-|
T Consensus       900 f~fd~~~~~~yp~~pp~~~~~s~~---~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~  976 (1101)
T KOG0895|consen  900 FFFDFQFPQDYPSSPPLVHYHSGG---VRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYF  976 (1101)
T ss_pred             EEEEeecCCCCCCCCCceEeecCc---eeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccccc
Confidence            346789999999999999996554   56667788899999999999963       57888888877776665666666


Q ss_pred             ccC
Q psy18020         84 SSR   86 (434)
Q Consensus        84 ~~~   86 (434)
                      .-+
T Consensus       977 ne~  979 (1101)
T KOG0895|consen  977 NEA  979 (1101)
T ss_pred             Ccc
Confidence            553

>KOG1924|consensus

Probab=94.35  E-value=0.2  Score=55.24  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             hhhHHHHHHHHHhcCCC---CHHHHHHHHHHH---HHHHHHH
Q psy18020        384 TEDTIYYMGEALRRGVI---DLEVYLKQVRSL---SRKQFMF  419 (434)
Q Consensus       384 ieDtiy~L~~aL~~g~I---~ld~flK~vR~L---aReQF~~  419 (434)
                      ++-.|-.|.+-|..-.|   +=|.|+.+++..   |||||-+
T Consensus       906 m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~  947 (1102)
T KOG1924|consen  906 MENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSK  947 (1102)
T ss_pred             HHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHH
Confidence            34444455555555444   446666666643   5677755

>KOG1924|consensus

Probab=94.15  E-value=0.33  Score=53.63  Aligned_cols=16  Identities=6%  Similarity=0.212  Sum_probs=11.2

Q ss_pred             cCCCCHHHHHHHHHHH
Q psy18020        397 RGVIDLEVYLKQVRSL  412 (434)
Q Consensus       397 ~g~I~ld~flK~vR~L  412 (434)
                      ..++..|.+-|+++.+
T Consensus       891 aSrvnad~ikK~~~~m  906 (1102)
T KOG1924|consen  891 ASRVNADEIKKNLQQM  906 (1102)
T ss_pred             hccccHHHHHHHHHHH
Confidence            3577788877777654

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=94.13  E-value=1.6  Score=38.21  Aligned_cols=68  Identities=6%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV  351 (434)
Q Consensus       284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~  351 (434)
                      .+...|...+..+...++.+..-.++...-.+.+++++.+++..-+.+...++.++.....|+.-|..
T Consensus        54 ~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~  121 (126)
T PF07889_consen   54 QVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE  121 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433333333333344444444444444444444444444444443333

The region featured in this family is approximately 100 amino acids long.

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=94.13  E-value=0.084  Score=46.51  Aligned_cols=66  Identities=17%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             ccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceec---c-ccccccCCCCCHHHHHHHHHHHh
Q psy18020          8 VYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYS---P-YLHTWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus         8 ~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~---p-yL~~W~~~~s~L~~li~~l~~~F   76 (434)
                      .-.|+|.|-++..||..||.+|+.-..  .+.--+||+.+|.+++   - .++.|++ ...+.++++....+.
T Consensus        35 ~~~~~l~l~~p~~FP~~pp~v~l~d~~--~~~~~pHv~~~G~LCl~~~~~~~D~~~P-~~~~~~~l~~a~~lL  104 (133)
T PF14461_consen   35 GGPFPLRLVFPDDFPYLPPRVYLEDPK--QFPLLPHVESDGKLCLLDEELVLDPWDP-EGIIADCLERAIRLL  104 (133)
T ss_pred             CeEEEEEEEECCcccCcCCEEEecCcc--ccCccCeEcCCCeEEEecCCcccCccCH-HHHHHHHHHHHHHHH
Confidence            457899999999999999999997322  2235599999999664   2 3555655 556666665555443

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=93.96  E-value=3.6  Score=44.95  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=25.0

Q ss_pred             HHHhhhhHHHHHHHHHhcC----CCCHHHHHHHHHHHHHH
Q psy18020        380 EEAATEDTIYYMGEALRRG----VIDLEVYLKQVRSLSRK  415 (434)
Q Consensus       380 ed~AieDtiy~L~~aL~~g----~I~ld~flK~vR~LaRe  415 (434)
                      .-+++.=++..|..+|.+|    ..+|...|+.+|.++.+
T Consensus       406 ~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~  445 (582)
T PF09731_consen  406 RAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPD  445 (582)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC
Confidence            3445556667777777777    47777777777777665

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.86  E-value=3.1  Score=40.46  Aligned_cols=113  Identities=17%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----
Q psy18020        283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE-----  357 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~-----  357 (434)
                      |.-..++...+.....+++.++.....++.....++.++..|+.....++..|+.+.++.+.++.-+...++..+     
T Consensus        16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~   95 (239)
T COG1579          16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALN   95 (239)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            333444444444444455555555555555555566666666666666666666666666666665543322111     


Q ss_pred             CCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        358 VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       358 ~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      .+++.+-.-..-+..+|.++.-+-..++|=|-.|.+.+
T Consensus        96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~  133 (239)
T COG1579          96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL  133 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13333333333344455555555555555555444444

>KOG0971|consensus

Probab=93.59  E-value=5.3  Score=45.25  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +.++++.+..+-++|++..++|.+++++++..|.++
T Consensus       401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadl  436 (1243)
T KOG0971|consen  401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADL  436 (1243)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444444433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.42  E-value=2.2  Score=33.75  Aligned_cols=53  Identities=26%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE  344 (434)
Q Consensus       292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e  344 (434)
                      .+..++.+++.|+.-..+|......|+.+...|+.++...+..|..|-.+.++
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33455777777777777888777888888888888888888877777665543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.30  E-value=3.4  Score=40.18  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      ...+++..++.+.+.+.+|......++++++.|+...+.+++.+..++++.++|++-++.++
T Consensus        36 ~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   36 AAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666777777777777777777777777777777777777777777777777766553

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.92  E-value=1.6  Score=41.59  Aligned_cols=50  Identities=14%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ..+..++|...-...++.+.+|+++.++|++.+..++.+.+.++.-++.+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884        116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455444445666666677777777777777777776666655544

>PRK11637 AmiB activator; Provisional

Probab=92.55  E-value=4.4  Score=42.60  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        322 ERIDKEKAELERSISFLKEKETEL  345 (434)
Q Consensus       322 ~eLe~~k~~Le~~i~~L~~~~~eL  345 (434)
                      ..++.+-+.++..|..+++++++.
T Consensus        99 ~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         99 NQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>KOG0427|consensus

Probab=92.52  E-value=0.27  Score=42.90  Aligned_cols=58  Identities=17%  Similarity=0.431  Sum_probs=41.0

Q ss_pred             eecCcccccceEEEecCCCCCCCCEe-EEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHH
Q psy18020          3 NLSGLVYHIPVCIWLMDTHPDHAPIC-YVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGL   68 (434)
Q Consensus         3 ~~~g~~y~iPi~iwl~~~yP~~~P~~-~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~l   68 (434)
                      .|.|.+|.+-  +=+++.||+..|.| ||-|     |-..+|+.+||.|+|-.| ++|.+ .-++..+
T Consensus        57 LYa~e~~qLq--~~F~~~YP~esPqVmF~~~-----~P~HPHiYSNGHICL~iL~d~WsP-Amsv~Sv  116 (161)
T KOG0427|consen   57 LYANETYQLQ--VEFPEHYPMESPQVMFVGP-----APLHPHIYSNGHICLDILYDSWSP-AMSVQSV  116 (161)
T ss_pred             eecCcEEEEE--EecCCCCCCCCCeEEEecC-----CCCCCceecCCeEEEEeecccCCc-chhhHHH
Confidence            3667777654  45799999998874 5544     444699999999998776 67987 3334333

>PRK11637 AmiB activator; Provisional

Probab=92.47  E-value=11  Score=39.61  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=16.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        306 TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       306 ~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      ++.+|...+..|+....+|+..+.+|+..-..+++..+.+.+.+.
T Consensus        87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=92.40  E-value=3  Score=39.87  Aligned_cols=88  Identities=22%  Similarity=0.262  Sum_probs=44.9

Q ss_pred             CCCchHHHHHHHHHHHH----HHH---------HH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy18020        267 TITDEHIKMSLKSAVED----KIR---------RK---MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE  330 (434)
Q Consensus       267 ~~~~e~~r~sl~sal~d----kL~---------~~---L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~  330 (434)
                      .++.+..+..++.|+.-    .|+         .+   ++++++..+++.+.|..--.+|...-+.++..+.+|+.+...
T Consensus       102 hiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~  181 (290)
T COG4026         102 HIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR  181 (290)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777766542    111         11   123333333344444443344444444455555566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        331 LERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       331 Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      |+.....|..+...|++..+.+..
T Consensus       182 LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         182 LEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHhchhHHHHHHHHHHHhcc
Confidence            666666666666666555555543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.10  E-value=3.1  Score=38.53  Aligned_cols=58  Identities=26%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       295 q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +...+++++.....++...-..+++....++......+..+..+++..+++.+-+.++
T Consensus        92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen   92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444555555555555555555555555555555554444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0417|consensus

Probab=92.04  E-value=0.26  Score=44.11  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|-++.  +.|.+|++||+.||-|.. -|.    .=+++||.+|+|++-.|. .|.+ ..+|..++..++..+.+
T Consensus        45 YEgG~F~--l~I~~p~~YP~~PPkV~F-~Tk----IyHPNI~~~G~IclDILk~~WsP-Al~i~~VllsI~sLL~~  112 (148)
T KOG0417|consen   45 YEGGVFF--LEIHFPEDYPFKPPKVRF-LTK----IYHPNIDSNGRICLDILKDQWSP-ALTISKVLLSICSLLSD  112 (148)
T ss_pred             cCCCEEE--EEEECCCCCCCCCCceEe-ecc----cccCCcCccccchHHhhhccCCh-hhHHHHHHHHHHHHhcC
Confidence            4444443  688999999999997533 121    235789999999988874 5766 88888888888876644

>KOG0422|consensus

Probab=91.88  E-value=0.48  Score=41.90  Aligned_cols=58  Identities=21%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             eEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHh
Q psy18020         13 VCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        13 i~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F   76 (434)
                      |.|=+|-+|||.||.+-.+-   |+-  .++||..|.|++|.|.  +|.+ .-..-++++.|....
T Consensus        53 l~I~fp~eYPFKPP~i~f~t---kiY--HpNVDe~gqvClPiis~EnWkP-~T~teqVlqaLi~li  112 (153)
T KOG0422|consen   53 LEIDFPVEYPFKPPKIKFKT---KIY--HPNVDEKGQVCLPIISAENWKP-ATRTEQVLQALIALI  112 (153)
T ss_pred             EEeeCCCCCCCCCCeeeeee---eec--cCCCCCCCceeeeeeecccccC-cccHHHHHHHHHHHh
Confidence            56778999999999875532   221  4789999999999986  6876 667788888888754

>KOG4657|consensus

Probab=91.71  E-value=4.7  Score=38.61  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        323 RIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       323 eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      +=+..+..+++.|..++++.+.+...+..++
T Consensus        83 ek~~~q~~ieqeik~~q~elEvl~~n~Q~lk  113 (246)
T KOG4657|consen   83 EKEARQMGIEQEIKATQSELEVLRRNLQLLK  113 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455566666666666666666666554

>KOG0976|consensus

Probab=91.36  E-value=10  Score=42.60  Aligned_cols=95  Identities=20%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR  396 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~  396 (434)
                      ++....+|+....+++..++.|..+.+++...-+.|+++.. .+.+       +--|+-.+++|..-..-++.++.+-|+
T Consensus       136 ~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~-~lt~-------~~~q~~tkl~e~~~en~~le~k~~k~~  207 (1265)
T KOG0976|consen  136 KKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNE-ELNE-------FNMEFQTKLAEANREKKALEEKLEKFK  207 (1265)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-HHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444433321 1111       334444555554444444444444443


Q ss_pred             c-----CCCCH---------HHHHHHHHHHH-HHHHHH
Q psy18020        397 R-----GVIDL---------EVYLKQVRSLS-RKQFMF  419 (434)
Q Consensus       397 ~-----g~I~l---------d~flK~vR~La-ReQF~~  419 (434)
                      .     ..+.+         -.-+|.|++|+ +.|||.
T Consensus       208 e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~lt  245 (1265)
T KOG0976|consen  208 EDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLT  245 (1265)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            2     23333         34678888884 677775

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=91.26  E-value=2.9  Score=36.69  Aligned_cols=18  Identities=17%  Similarity=0.181  Sum_probs=6.8

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q psy18020        304 KQTENELNQGKFKLARMF  321 (434)
Q Consensus       304 ~~~q~EL~~~~~~L~~~~  321 (434)
                      ..++.+|..+-+.|..-+
T Consensus        60 ~~tKkhLsqRId~vd~kl   77 (126)
T PF07889_consen   60 SSTKKHLSQRIDRVDDKL   77 (126)
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            333434443333333333

The region featured in this family is approximately 100 amino acids long.

>KOG0419|consensus

Probab=91.13  E-value=0.47  Score=41.53  Aligned_cols=67  Identities=16%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|-++.  +.|=+.++||..||.|-.     ..+.=.++|+++|.+++-.|++ |++ ..++...+-.++..+.+
T Consensus        48 ~e~gtFk--Ltl~FteeYpnkPP~VrF-----vs~mFHPNvya~G~iClDiLqNrWsp-~Ydva~ILtsiQslL~d  115 (152)
T KOG0419|consen   48 FEGGTFK--LTLEFTEEYPNKPPTVRF-----VSKMFHPNVYADGSICLDILQNRWSP-TYDVASILTSIQSLLND  115 (152)
T ss_pred             cCCceEE--EEEEcccccCCCCCeeEe-----eeeccCCCcCCCCcchHHHHhcCCCC-chhHHHHHHHHHHHhcC
Confidence            4455544  466789999999999733     1223358899999999999986 655 88888887777776643

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.09  E-value=10  Score=41.56  Aligned_cols=107  Identities=20%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHH
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILN  376 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~  376 (434)
                      +.+++.+.....++...+.++...+..|+.....++..+..++.+..++.+.+...   .-+.+.+       -|..++.
T Consensus       382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~---~lpgip~-------~y~~~~~  451 (569)
T PRK04778        382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS---NLPGLPE-------DYLEMFF  451 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCcH-------HHHHHHH
Confidence            34444444444455555555555555555555555555555555555555554432   2223333       3333333


Q ss_pred             hhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHHH
Q psy18020        377 TFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR-SLSRKQFMF  419 (434)
Q Consensus       377 l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR-~LaReQF~~  419 (434)
                            .+++-|..|.+.|++|.|+++.=-+... .-.|=.|+.
T Consensus       452 ------~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~  489 (569)
T PRK04778        452 ------EVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE  489 (569)
T ss_pred             ------HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                  4577888899999999999887763333 233444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.71  E-value=15  Score=38.55  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=17.5

Q ss_pred             hHHHHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy18020        378 FTEEAATEDTIYYMGEALRRGVI-DLEVYLKQVRSL  412 (434)
Q Consensus       378 ~Aed~AieDtiy~L~~aL~~g~I-~ld~flK~vR~L  412 (434)
                      .-||..=.+-+-.|-++++.+.. -.|.+.+....|
T Consensus       138 ~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l  173 (420)
T COG4942         138 SPEDAQRSVRLAIYYGALNPARAERIDALKATLKQL  173 (420)
T ss_pred             ChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34444445666666666666654 233343333333

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=90.63  E-value=15  Score=37.47  Aligned_cols=146  Identities=13%  Similarity=0.057  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK  355 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k  355 (434)
                      .+...+-.+++..+.+.+.+.+..-+++...-.+|+.++..|.+-...|+.+.+.....+..|+..+...+..++.++..
T Consensus        73 ~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~  152 (333)
T PF05816_consen   73 GFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAE  152 (333)
T ss_pred             hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444555555555554444444555566666666666666666666666666666666666666555555555322


Q ss_pred             CCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        356 TEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK  428 (434)
Q Consensus       356 ~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~  428 (434)
                      ......+-.. .+.+-      .=+...+++.++.|.+-++.=.+..-+.+-..=.+-==|...+.|++||..
T Consensus       153 ~~~~~~~~~~-~d~~~------~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~  218 (333)
T PF05816_consen  153 LLPALQADAE-GDQMD------AQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQS  218 (333)
T ss_pred             hhHHHhhccc-cCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Confidence            1100000000 11111      112344566777776666553333333333222222235555666666653

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.48  E-value=6  Score=34.42  Aligned_cols=53  Identities=25%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       298 ~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +++=.|....+++......+.....+++....+.+..++.|+++.+++++.-.
T Consensus        51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~  103 (120)
T PF12325_consen   51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRA  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            33333344444444444444444455555555555555555555555554433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.45  E-value=4.2  Score=42.58  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=16.9

Q ss_pred             CCccccccccch----HHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        358 VDVDEAVTTTAP----IYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       358 ~diDe~i~~~~~----l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      ..+-.++.++++    ...++|..+..  ++-+.|..|.+-+
T Consensus       131 p~~~ll~~~eda~~~~R~ai~~~~l~~--~~~~~i~~l~~~~  170 (420)
T COG4942         131 PPPALLVSPEDAQRSVRLAIYYGALNP--ARAERIDALKATL  170 (420)
T ss_pred             CCchhhcChhhhhHHHHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence            344445555553    34555554443  3345555555443

>KOG0933|consensus

Probab=90.17  E-value=13  Score=42.66  Aligned_cols=60  Identities=12%  Similarity=0.060  Sum_probs=42.5

Q ss_pred             HHHHHHHhhHHHHhhhhHHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        370 IYKQILNTFTEEAATEDTIY-------YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKH  429 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy-------~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~  429 (434)
                      +..+|=++-++-..|++-|.       .+.+....|.++...-...+-.+.+|-=-.|.-+.++.+.
T Consensus       869 ~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k  935 (1174)
T KOG0933|consen  869 AQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK  935 (1174)
T ss_pred             HHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence            66666677777777776663       2334445677788888888888888888888877777654

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.13  E-value=5.1  Score=40.58  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHh
Q psy18020        298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNT  377 (434)
Q Consensus       298 ~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l  377 (434)
                      .++|.+......|......+-++++++..+++....-+.+|..+   |.-.|.. +....+|||.++...-=+..+|=.+
T Consensus       133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E---Ln~~L~g-~~~rivDIDaLi~ENRyL~erl~q~  208 (319)
T PF09789_consen  133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE---LNYILNG-DENRIVDIDALIMENRYLKERLKQL  208 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCC-CCCCcccHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555556677777777777777666666433   3333321 2346689999998888889999999


Q ss_pred             hHHHHhhhhHHHHHHHHHh
Q psy18020        378 FTEEAATEDTIYYMGEALR  396 (434)
Q Consensus       378 ~Aed~AieDtiy~L~~aL~  396 (434)
                      ..|-.-+.-+|--+..+|.
T Consensus       209 qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  209 QEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999989999998888887

>KOG1853|consensus

Probab=90.07  E-value=20  Score=35.06  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        330 ELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       330 ~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      .|+..+..++...+.+.+.|.+|+
T Consensus        95 ~Leddlsqt~aikeql~kyiReLE  118 (333)
T KOG1853|consen   95 QLEDDLSQTHAIKEQLRKYIRELE  118 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555555554

>KOG0994|consensus

Probab=89.37  E-value=32  Score=40.41  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        322 ERIDKEKAELERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      .+++++....|+.+....+.+.+|+..+++|+.
T Consensus      1601 ~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1601 AKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555666677777777653

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.33  E-value=0.9  Score=45.95  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHH
Q psy18020        310 LNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIY  389 (434)
Q Consensus       310 L~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy  389 (434)
                      |+..+..+..++.+|+.++.++++++..|+.+.+++++-...           ....-+.+..++++..-+..+++.-+.
T Consensus        55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~-----------~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE-----------YWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555433322           122223367777777777788877777


Q ss_pred             HHHHHHh
Q psy18020        390 YMGEALR  396 (434)
Q Consensus       390 ~L~~aL~  396 (434)
                      +..+-|.
T Consensus       124 ~~~~~L~  130 (314)
T PF04111_consen  124 YASNQLD  130 (314)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.19  E-value=5.8  Score=31.80  Aligned_cols=38  Identities=29%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ..|.++...+...+..|++..+.|+.+....++.|..+
T Consensus        35 ~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422         35 NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555555555555555544444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.63  E-value=26  Score=37.83  Aligned_cols=9  Identities=11%  Similarity=0.150  Sum_probs=4.5

Q ss_pred             CCCHHHHHH
Q psy18020         62 NSKLEGLIK   70 (434)
Q Consensus        62 ~s~L~~li~   70 (434)
                      +|+|++.|.
T Consensus        40 KStll~aI~   48 (562)
T PHA02562         40 KSTMLEALT   48 (562)
T ss_pred             HHHHHHHHH
Confidence            555554443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=88.62  E-value=5.8  Score=42.07  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        297 QEEIEILKQTENELNQGK-FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~-~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ++|.++|++.+..+..+- +.|+.+..+++.+++.|+..++.++..+++|.+-++.+
T Consensus        86 ~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~  142 (472)
T TIGR03752        86 KAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV  142 (472)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344444444333333332 22555556666677777777777777777776665444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG3091|consensus

Probab=88.62  E-value=6.2  Score=41.91  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        396 RRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI  430 (434)
Q Consensus       396 ~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~  430 (434)
                      .+..||.|.-...--.|.+||    -.|.|+.+.+
T Consensus       455 ~~~~iD~~~~~e~~e~lt~~~----e~l~~Lv~Il  485 (508)
T KOG3091|consen  455 ESYWIDFDKLIEMKEHLTQEQ----EALTKLVNIL  485 (508)
T ss_pred             cceeechhhhHHHHHHHHHHH----HHHHHHHHHH
Confidence            345777777777767777777    3455555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.59  E-value=13  Score=41.82  Aligned_cols=108  Identities=22%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CCCccccccccchHH--HHH--HHhhHHHHhhhhHHH
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTE--KT-EVDVDEAVTTTAPIY--KQI--LNTFTEEAATEDTIY  389 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~--k~-~~diDe~i~~~~~l~--~Ql--~~l~Aed~AieDtiy  389 (434)
                      ++.-+++||.+...|+.++...++...+|++-+.+++.  ++ ..|++.++.+-..+-  ++-  -.|-||..--=|...
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs  622 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS  622 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            55555666666666666666666666666665554443  22 346666443333331  111  124455555555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        390 YMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS  431 (434)
Q Consensus       390 ~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~  431 (434)
                      +||+|-+.    ++..-.++|   ++-..++.|-.||.+.|.
T Consensus       623 aLg~akrq----~ei~~~~~~---~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  623 ALGDAKRQ----LEIAQGQLR---KKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            55555443    222222222   344556667777776654

; GO: 0016021 integral to membrane

>KOG0420|consensus

Probab=88.57  E-value=0.6  Score=42.69  Aligned_cols=68  Identities=21%  Similarity=0.292  Sum_probs=52.9

Q ss_pred             eecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          3 NLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         3 ~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      .|+|.+++  +.|=++..||+.||-|-+ -|  +  +=++++|.+|.|+|-.|+ +|.+ .-||.+.|--|...|-+
T Consensus        72 yY~gGkf~--F~~~v~~~Yp~~PPKVkC-lt--k--V~HPNId~~GnVCLnILRedW~P-~lnL~sIi~GL~~LF~e  140 (184)
T KOG0420|consen   72 YYQGGKFR--FKFKVPNAYPHEPPKVKC-LT--K--VYHPNIDLDGNVCLNILREDWRP-VLNLNSIIYGLQFLFLE  140 (184)
T ss_pred             eecCceEE--EEEECCCCCCCCCCeeee-ee--c--cccCCcCCcchHHHHHHHhcCcc-ccchHHHHHHHHHHhcc
Confidence            36666555  468899999999999843 22  1  124789999999988886 5876 88999999999998855

>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family

Probab=88.38  E-value=9.3  Score=39.03  Aligned_cols=40  Identities=10%  Similarity=0.079  Sum_probs=26.8

Q ss_pred             chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q psy18020        368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV  409 (434)
Q Consensus       368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~v  409 (434)
                      +-++.|+-+++  -.|++..-..|.+.+..|+.+|..|.+.|
T Consensus       165 ~n~a~~~~~~~--~~af~gm~dal~~fvttGk~~f~d~~~si  204 (332)
T TIGR01541       165 TNVASAAAQLA--TNAFGGMASNIAQMLTTGKANWKSFAVSV  204 (332)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            33444444443  34556666667777788999999999876

This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=88.37  E-value=19  Score=35.99  Aligned_cols=110  Identities=21%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------HHHHHHHHhcCCCCCCccccccccchHHHHHH
Q psy18020        307 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKE---T--------ELDEILAVLTEKTEVDVDEAVTTTAPIYKQIL  375 (434)
Q Consensus       307 q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~---~--------eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~  375 (434)
                      .++|+..++.-++...+++..+..|...|...+...   .        +-++|+. +.++-..||..+......|+.||-
T Consensus        76 ~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~-lqdkmn~d~S~lkd~ne~LsQqLs  154 (305)
T PF14915_consen   76 NSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVR-LQDKMNSDVSNLKDNNEILSQQLS  154 (305)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHH-HHHHhcchHHhHHHHhHHHHHHHH
Confidence            334444444444445555556666666665554321   1        1134443 234555688888888899999999


Q ss_pred             HhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy18020        376 NTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR  420 (434)
Q Consensus       376 ~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~R  420 (434)
                      ..-++-..+++=+++...+|+...+-|+.   -=|.|+.-|+-..
T Consensus       155 kaesK~nsLe~elh~trdaLrEKtL~lE~---~QrdL~Qtq~q~K  196 (305)
T PF14915_consen  155 KAESKFNSLEIELHHTRDALREKTLALES---VQRDLSQTQCQIK  196 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            99999999999999999999988877763   3466766666543

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.23  E-value=7.9  Score=33.96  Aligned_cols=75  Identities=23%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHH
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQI  374 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql  374 (434)
                      ....++.|..++.++...+..+.....+++.-+..|+..-.....+...|++-|+.++.    -+|++-.-.+.|++||
T Consensus        54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~----r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen   54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ----RIEDLNEQNKLLHDQL  128 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            34445555555555555444444444333333333333333333333333333333311    2233333444566665

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR00996 Mtu_fam_mce virulence factor Mce family protein

Probab=88.19  E-value=5.7  Score=39.24  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=12.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020        392 GEALRRGVIDLEVYLKQVRSLSRK  415 (434)
Q Consensus       392 ~~aL~~g~I~ld~flK~vR~LaRe  415 (434)
                      ...|...+=+++..+.....+++.
T Consensus       247 ~~~l~~~~~~l~~~l~~l~~~~~~  270 (291)
T TIGR00996       247 RDLLAENRPNLPQALANLAPVLTL  270 (291)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            344544555556666665555543

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.

>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.17  E-value=5.5  Score=40.92  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHH
Q psy18020        292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY  371 (434)
Q Consensus       292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~  371 (434)
                      ...++.+.++.+.++-++|..+...|...+..|...-+.+....+.+.+..+.+...+..+.+.. -++++++...+.+.
T Consensus       174 ~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~-~~l~~~l~~~~~~~  252 (359)
T COG1463         174 TGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARR-DALDDALAALSALA  252 (359)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHH
Confidence            34456677777888888888888888888888888888888888777777777777777665544 46666666666666


Q ss_pred             HHHHHhhHHH
Q psy18020        372 KQILNTFTEE  381 (434)
Q Consensus       372 ~Ql~~l~Aed  381 (434)
                      ++.-++++|.
T Consensus       253 ~~~~~ll~~~  262 (359)
T COG1463         253 ATVNDLLAEN  262 (359)
T ss_pred             HHHHHHHHhh
Confidence            6666666554

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.10  E-value=10  Score=38.42  Aligned_cols=16  Identities=25%  Similarity=0.495  Sum_probs=11.8

Q ss_pred             HHhhhhHHHHHHHHHh
Q psy18020        381 EAATEDTIYYMGEALR  396 (434)
Q Consensus       381 d~AieDtiy~L~~aL~  396 (434)
                      +.-..|.+|-+...|.
T Consensus       207 EsKVqDLm~EirnLLQ  222 (401)
T PF06785_consen  207 ESKVQDLMYEIRNLLQ  222 (401)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5667788888777775

>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27

Probab=88.09  E-value=6  Score=36.58  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHH--HHhhhh-----HHHHHHHHHh
Q psy18020        324 IDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTE--EAATED-----TIYYMGEALR  396 (434)
Q Consensus       324 Le~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Ae--d~AieD-----tiy~L~~aL~  396 (434)
                      +......++...+.+++..+..+.|++.+.+..+.|+-+++.  ..+..++++++..  +.--+|     .+..|.+++.
T Consensus        52 v~RY~~~~~~~~~~lr~are~a~al~~~~~~~~~~~~~~al~--~~~~~~~f~~l~~~~~~~~~~~~~~k~l~~la~~~~  129 (180)
T PF11985_consen   52 VHRYAQRFEEVLERLREAREIAEALAEELGDEPEDDVTEALI--EMLQTLLFEALMSAQEEDEEDDDPPKDLMKLAKALA  129 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH--HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence            334566677778888888888899999887666666666542  2344555554333  222222     5777777764


Q ss_pred             ---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy18020        397 ---RGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHISYA  433 (434)
Q Consensus       397 ---~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~l~  433 (434)
                         +.....+.|-+++|.-.++.+-.  .+.++.+..||.
T Consensus       130 ~l~~A~~~~~k~~~~ir~~~~~~~~~--~~e~~~~~~Gls  167 (180)
T PF11985_consen  130 RLSRASVYSKKRRAEIRKKAAAEAAA--AAEEAAKEGGLS  167 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCC
Confidence               44667777777777666666655  567777777764

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=88.06  E-value=1.3  Score=40.76  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=14.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       305 ~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +.|.||...+..|.+.++.   .+++|+.+|.+|+.+++.||+...
T Consensus       102 QVqqeL~~tf~rL~~~Vd~---~~~eL~~eI~~L~~~i~~le~~~~  144 (171)
T PF04799_consen  102 QVQQELSSTFARLCQQVDQ---TKNELEDEIKQLEKEIQRLEEIQS  144 (171)
T ss_dssp             --------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333   334444444444444444444433

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=87.77  E-value=9.6  Score=29.54  Aligned_cols=57  Identities=18%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +.+.++.|-..-.+|......|......++.++..|......-..+++.|..-+..+
T Consensus         5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l   61 (65)
T TIGR02449         5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            344455555566666666666777777777777777777766666666666555544

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=87.61  E-value=48  Score=36.29  Aligned_cols=99  Identities=18%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhh
Q psy18020        299 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTF  378 (434)
Q Consensus       299 ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~  378 (434)
                      .++.+...=.++...+..+...+..|+......++.+..++.+..++.+.++..   .-+.+-+       -|.+++..+
T Consensus       380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~---nLPGlp~-------~y~~~~~~~  449 (560)
T PF06160_consen  380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS---NLPGLPE-------DYLDYFFDV  449 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCH-------HHHHHHHHH
Confidence            333333333344444444666666666666666666666666666666666544   3344433       344445444


Q ss_pred             HHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020        379 TEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS  413 (434)
Q Consensus       379 Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La  413 (434)
                            .|-|..|.+.|++..|+++.--+.+....
T Consensus       450 ------~~~i~~l~~~L~~~pinm~~v~~~l~~a~  478 (560)
T PF06160_consen  450 ------SDEIEELSDELNQVPINMDEVNKQLEEAE  478 (560)
T ss_pred             ------HHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence                  48899999999999999998877776544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=87.51  E-value=28  Score=37.01  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=18.3

Q ss_pred             HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18020        380 EEAATEDTIYYMGEALRRGVIDLEVYLKQVR  410 (434)
Q Consensus       380 ed~AieDtiy~L~~aL~~g~I~ld~flK~vR  410 (434)
                      |-.|+..-+.-|..-+.+..|+.+.|-+.+-
T Consensus       345 ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~  375 (622)
T COG5185         345 EIKALQSNIDELHKQLRKQGISTEQFELMNQ  375 (622)
T ss_pred             HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHH
Confidence            3345555555566666666666666665553

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=87.40  E-value=19  Score=32.49  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      .++....+++..+++|+...+..++++...|+..++.++.....++++..++...+...
T Consensus        34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~   92 (160)
T PF13094_consen   34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD   92 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence            34567778888999999998888888888888877777777777777777766665543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=87.01  E-value=37  Score=36.95  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=11.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        309 ELNQGKFKLARMFERIDKEKAELERSISFLK  339 (434)
Q Consensus       309 EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~  339 (434)
                      +|....+.+..+...|.....+....|..|+
T Consensus       196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LE  226 (546)
T PF07888_consen  196 ELTESSEELKEERESLKEQLAEARQRIRELE  226 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0421|consensus

Probab=86.98  E-value=0.64  Score=41.23  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=46.8

Q ss_pred             eecCcccccceEEEecCCCCCCCCEe-EEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020          3 NLSGLVYHIPVCIWLMDTHPDHAPIC-YVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         3 ~~~g~~y~iPi~iwl~~~yP~~~P~~-~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      .|.|.+|.+  .+=+|.+||+.||.| |..|-      =.++||.+|.|+|-.|.+ |.. -.|....+-.++...|+
T Consensus        72 vyegl~ykl--Sl~Fp~~YPy~pP~vkFltpc------~HPNVD~~GnIcLDILkdKWSa-~YdVrTILLSiQSLLGE  140 (175)
T KOG0421|consen   72 VYEGLKYKL--SLSFPNNYPYKPPTVKFLTPC------FHPNVDLSGNICLDILKDKWSA-VYDVRTILLSIQSLLGE  140 (175)
T ss_pred             cccCcEEEE--EEecCCCCCCCCCeeEeeccc------cCCCccccccchHHHHHHHHHH-HHhHHHHHHHHHHHhCC
Confidence            477888875  556799999999986 33332      147899999999998865 654 45555555555555543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.86  E-value=8.5  Score=35.99  Aligned_cols=58  Identities=22%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q psy18020        295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL-DEILAVL  352 (434)
Q Consensus       295 q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL-e~~I~~l  352 (434)
                      .++..+..+...-.++...-+.|.+++..|+-..+.++..+..|+.+.++| ++|+...
T Consensus       127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k  185 (194)
T PF08614_consen  127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK  185 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555556688888888888888888888888888777 6676643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=86.81  E-value=42  Score=34.87  Aligned_cols=41  Identities=15%  Similarity=0.130  Sum_probs=26.7

Q ss_pred             HHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020        375 LNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK  415 (434)
Q Consensus       375 ~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe  415 (434)
                      +.|+.|=.-|.++|..|.+.|..-.-.+..-++.--.|-++
T Consensus       320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~d  360 (384)
T PF03148_consen  320 YGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEED  360 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445557788899888888877666555555554444444

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=86.60  E-value=16  Score=34.30  Aligned_cols=61  Identities=10%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       290 ~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+...+++++++..++.+++...++...+++...|+.++...+..+..|+..+..|+.-.+
T Consensus       125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445566777777777777778888888888888888888888888888888888876544

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.47  E-value=39  Score=34.10  Aligned_cols=57  Identities=21%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +++.++.+..+-++|........+.++.++...+.|...+..|++++.+.++.|++.
T Consensus       117 Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh  173 (302)
T PF09738_consen  117 LKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKH  173 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444444444444444455567777777778888888888888888888765

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.42  E-value=16  Score=32.64  Aligned_cols=56  Identities=27%  Similarity=0.388  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +++++.|...-..|......|...+..|..++..|.+.++..+.++.+|+.....+
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44555555555555555555666666777777777777777777777776665544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK12704 phosphodiesterase; Provisional

Probab=86.26  E-value=21  Score=38.77  Aligned_cols=20  Identities=10%  Similarity=0.240  Sum_probs=9.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q psy18020        401 DLEVYLKQVRSLSRKQFMFR  420 (434)
Q Consensus       401 ~ld~flK~vR~LaReQF~~R  420 (434)
                      +...++|..-.-++++--.+
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~  189 (520)
T PRK12704        170 EAAVLIKEIEEEAKEEADKK  189 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555544433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.20  E-value=5.7  Score=38.04  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFK---LARMFERIDKEKAELERSISFLKEKETELDE  347 (434)
Q Consensus       284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~---L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~  347 (434)
                      -|+.+|.+......+-++.+..++++++..++.   |+.+...|+.+...+...+..|+++-++|+.
T Consensus       139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            344444444444344444444444444444433   3334445555555555555555555555543

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.06  E-value=26  Score=36.81  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020        323 RIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA  382 (434)
Q Consensus       323 eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~  382 (434)
                      .-+..+..+...+..|+...++|++.+..|   ....|+.+|.+...-.+-|+|-+.+|.
T Consensus        67 ~~~~~~~~f~~l~~~ld~~~~~L~~~l~~L---r~t~v~~~~~~~~~~~ktL~DFVd~~~  123 (412)
T PF04108_consen   67 VYEWGQRDFKDLVKELDPADARLEQTLDML---RNTKVPPFFRPPGEEPKTLYDFVDEDS  123 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcCCccccCCCCCCCcHHHhcCHHH
Confidence            344466667777777888888888888888   455677777777777888888887764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family

Probab=85.93  E-value=14  Score=36.53  Aligned_cols=116  Identities=10%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHH
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIL  375 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~  375 (434)
                      +.+.++.+.++-.+|+...+.|.+.++.|....+.+......|.+-.+.+......+.++. -++|.++...+-+.+++-
T Consensus        33 lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~-~~L~~lL~~~~~~a~~~~  111 (267)
T PF11887_consen   33 LGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQR-QQLDALLLSATGLADTGT  111 (267)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666666666666666666666555554333 377777777777777777


Q ss_pred             HhhHHH-HhhhhHHHHHHH---HHhcCCCCHHHHHHHHHHH
Q psy18020        376 NTFTEE-AATEDTIYYMGE---ALRRGVIDLEVYLKQVRSL  412 (434)
Q Consensus       376 ~l~Aed-~AieDtiy~L~~---aL~~g~I~ld~flK~vR~L  412 (434)
                      +++.+. ..|..++..|..   +|.+-.=.|.-+|+....+
T Consensus       112 ~~l~~n~~~L~~~~~~L~p~~~lL~~~~p~l~c~L~~l~~~  152 (267)
T PF11887_consen  112 DFLADNRDNLIRALDDLRPTTDLLAKYSPELPCTLQGLAPF  152 (267)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            666655 333333333332   3334444555555555433

>PRK14140 heat shock protein GrpE; Provisional

Probab=85.88  E-value=16  Score=34.46  Aligned_cols=91  Identities=14%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy18020        285 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAV  364 (434)
Q Consensus       285 L~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i  364 (434)
                      +..++.+...++.+--+.+.+.++++..-+...++++..+  .+..+++-+..|-.-.+.|++.+...  .+..+.+.++
T Consensus        42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~--~~~a~~~~~~~LLpvlDnLerAl~~~--~~~~~~~~i~  117 (191)
T PRK14140         42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAA--EKYRAQSLASDLLPALDNFERALQIE--ADDEQTKSLL  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcc--CccchHHHHH
Confidence            5555544444444444556666666666555555554442  34445555666666666666666532  2222344445


Q ss_pred             cccchHHHHHHHhhH
Q psy18020        365 TTTAPIYKQILNTFT  379 (434)
Q Consensus       365 ~~~~~l~~Ql~~l~A  379 (434)
                      .+-.-.++|+.+.+.
T Consensus       118 ~Gv~mi~k~l~~~L~  132 (191)
T PRK14140        118 KGVEMVHRQLLEALK  132 (191)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            454555666655554

>TIGR00996 Mtu_fam_mce virulence factor Mce family protein

Probab=85.78  E-value=18  Score=35.61  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHH
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIL  375 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~  375 (434)
                      +.+.++.+..+-+.|......|.+.+..+....+.+.++-..+.+-.+.+...+..+.+ ..-++++++..-+.+.+++=
T Consensus       169 l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~-~~~~l~~~l~~l~~~~~~~~  247 (291)
T TIGR00996       169 LRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLAD-RDDALDDALAALSGASAQVR  247 (291)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence            44445555555566666666666666666666666666666666666666666665543 22345555544455555555


Q ss_pred             HhhHHH-HhhhhHHHHHHH
Q psy18020        376 NTFTEE-AATEDTIYYMGE  393 (434)
Q Consensus       376 ~l~Aed-~AieDtiy~L~~  393 (434)
                      .++++. ..|++++..|..
T Consensus       248 ~~l~~~~~~l~~~l~~l~~  266 (291)
T TIGR00996       248 DLLAENRPNLPQALANLAP  266 (291)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            555433 344444444443

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.77  E-value=31  Score=32.38  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR  396 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~  396 (434)
                      |+.....|+++...|-.....++++...|..-|.++.....    .+....+.+-++.-+|..+-.++--=|+.+...+.
T Consensus        72 Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~----kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~  147 (193)
T PF14662_consen   72 LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG----KLLAERDGLKKRSKELATEKATLQRQLCEFESLIC  147 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666632111    01122233667777777777777777777766665


Q ss_pred             c
Q psy18020        397 R  397 (434)
Q Consensus       397 ~  397 (434)
                      +
T Consensus       148 ~  148 (193)
T PF14662_consen  148 Q  148 (193)
T ss_pred             H
Confidence            3

>KOG1655|consensus

Probab=85.74  E-value=4.4  Score=38.02  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q psy18020        330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQ  408 (434)
Q Consensus       330 ~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~  408 (434)
                      .|+..+..|-+..+|+++.+...  -+.+|||+     +.|-.-|=.|-.|+...+++-.+|..+...+.+..+.|++.
T Consensus       130 dlQDem~Dlmd~a~EiQE~Lgr~--y~~peide-----~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~~~~~de  201 (218)
T KOG1655|consen  130 DLQDEMEDLMDQADEIQEVLGRN--YNTPDIDE-----ADLDAELDALGQELDMLEEDENYLMPSYLAPANEPPAFIDE  201 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--cCCCCcCH-----HHHHHHHHHHHhHhhcccccccccchhhhCCCCCCCCCccc
Confidence            34455555666667777777644  34444554     22555555566667777766677777777777777777654

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.72  E-value=32  Score=34.86  Aligned_cols=15  Identities=7%  Similarity=-0.015  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHhcCC
Q psy18020        418 MFRALLFKCYKHISY  432 (434)
Q Consensus       418 ~~Ra~~~Ki~~~~~l  432 (434)
                      ..++.++.+.+..|+
T Consensus       275 ~Lk~~~~~Le~l~g~  289 (312)
T smart00787      275 KLKEQLKLLQSLTGW  289 (312)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            344444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.64  E-value=32  Score=32.34  Aligned_cols=79  Identities=24%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHH
Q psy18020        295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQI  374 (434)
Q Consensus       295 q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql  374 (434)
                      .+..+++.|+..-..|+....+|-..-..++.+...|...|..|+++..++..-.+.+..    +..++....+.+-+|+
T Consensus        64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHHHH
Confidence            346667777777777777777787778888888888888888888888777766665532    3344444556677777


Q ss_pred             HHh
Q psy18020        375 LNT  377 (434)
Q Consensus       375 ~~l  377 (434)
                      +..
T Consensus       140 ~~~  142 (193)
T PF14662_consen  140 CEF  142 (193)
T ss_pred             HHH
Confidence            543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.57  E-value=11  Score=36.37  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      |+..+..++.++.+.+..+.++.++...|...|..++
T Consensus        65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777777777777666666666553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.56  E-value=28  Score=35.27  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        300 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE  342 (434)
Q Consensus       300 le~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~  342 (434)
                      ++.|++-...|....+.++..+.+|....+.|+..+..|++..
T Consensus       153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~  195 (312)
T smart00787      153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE  195 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3333334444444444444444444444444444444443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=85.49  E-value=38  Score=33.03  Aligned_cols=19  Identities=16%  Similarity=0.034  Sum_probs=6.9

Q ss_pred             HHHHHHhhHHHHhhhhHHH
Q psy18020        371 YKQILNTFTEEAATEDTIY  389 (434)
Q Consensus       371 ~~Ql~~l~Aed~AieDtiy  389 (434)
                      .+++-++.-+-.++++-++
T Consensus       123 ~~~i~~l~~~~~~~e~~~~  141 (239)
T COG1579         123 EKEIEDLKERLERLEKNLA  141 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PRK00106 hypothetical protein; Provisional

Probab=85.38  E-value=31  Score=37.59  Aligned_cols=16  Identities=0%  Similarity=0.019  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18020        403 EVYLKQVRSLSRKQFM  418 (434)
Q Consensus       403 d~flK~vR~LaReQF~  418 (434)
                      ..++|..-.-+++.--
T Consensus       187 ~~~i~~~e~~a~~~a~  202 (535)
T PRK00106        187 ATRIREAEREVKDRSD  202 (535)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

>KOG0995|consensus

Probab=85.17  E-value=15  Score=39.84  Aligned_cols=49  Identities=18%  Similarity=0.290  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .++.--..|....+.+...++.|..+..+-+..++.|+.+.++|...|+
T Consensus       277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444555555555555555555555566666666655554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.98  E-value=21  Score=35.17  Aligned_cols=31  Identities=10%  Similarity=0.270  Sum_probs=19.4

Q ss_pred             cchHHHHHHHhhHHHHhhhhHHHHHHHHHhc
Q psy18020        367 TAPIYKQILNTFTEEAATEDTIYYMGEALRR  397 (434)
Q Consensus       367 ~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~  397 (434)
                      +...|++.++++.+..--+++|-.|.+.++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~  172 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKK  172 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3556777777766544455666666666653

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=84.86  E-value=22  Score=29.69  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        331 LERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       331 Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      ++..+..|+.-..+|++|...++
T Consensus        71 Ie~~V~~LE~~v~~LD~ysk~LE   93 (99)
T PF10046_consen   71 IEEQVTELEQTVYELDEYSKELE   93 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33366667777777777776664

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.81  E-value=11  Score=35.79  Aligned_cols=15  Identities=33%  Similarity=0.401  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q psy18020        333 RSISFLKEKETELDE  347 (434)
Q Consensus       333 ~~i~~L~~~~~eLe~  347 (434)
                      +.+..|+++.++|.+
T Consensus       132 ~~~~~L~~~n~~L~~  146 (206)
T PRK10884        132 SVINGLKEENQKLKN  146 (206)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333434444433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=84.77  E-value=19  Score=28.94  Aligned_cols=48  Identities=23%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        297 QEEIEILKQTENE-------LNQGKFKLARMFERIDKEKAELERSISFLKEKETE  344 (434)
Q Consensus       297 ~~ele~L~~~q~E-------L~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e  344 (434)
                      +-+++.|+.-...       +..+.+.|.++...|+.++...+.++..|-.+.++
T Consensus        24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~   78 (79)
T PRK15422         24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE   78 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4445555444444       44455668888888888888888877777666543

>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=84.70  E-value=15  Score=34.64  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      .++.+..+.+.+.+++++.-+..+++++++..  +..+++-+..|---++.+++.|.....
T Consensus        50 ~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~--k~a~e~~~~dlLpviDnlerAl~~~~~  108 (193)
T COG0576          50 AQLEELKDKYLRAQAEFENLRKRTEREREEAK--KYAIEKFAKDLLPVIDNLERALEAAED  108 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333445566666666666666666655544  556667777777777777777765433

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.69  E-value=34  Score=32.11  Aligned_cols=20  Identities=25%  Similarity=0.197  Sum_probs=11.0

Q ss_pred             HHHHHhhHHHHhhhhHHHHH
Q psy18020        372 KQILNTFTEEAATEDTIYYM  391 (434)
Q Consensus       372 ~Ql~~l~Aed~AieDtiy~L  391 (434)
                      +.+..+-++..+|++.+...
T Consensus       159 ~ei~~lks~~~~l~~~~~~~  178 (190)
T PF05266_consen  159 KEISRLKSEAEALKEEIENA  178 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666555443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.43  E-value=19  Score=34.92  Aligned_cols=31  Identities=13%  Similarity=0.258  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        320 MFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +++.|..++....+.+...+.++..|+..|.
T Consensus        40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk   70 (230)
T PF10146_consen   40 EMEELLQERMAHVEELRQINQDINTLENIIK   70 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK14161 heat shock protein GrpE; Provisional

Probab=84.31  E-value=24  Score=32.82  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhh
Q psy18020        300 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTF  378 (434)
Q Consensus       300 le~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~  378 (434)
                      .+.+.++++|++.-+...++++.++  .+..+++-+..|-.-.+.|++.+......++..+..++.+-.-.++|+.+.+
T Consensus        39 kd~~lR~~AefeN~rkR~~ke~~~~--~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL  115 (178)
T PRK14161         39 KDKLIRTTAEIDNTRKRLEKARDEA--KDYAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVF  115 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555444444433332  2333445555555556666666653322222222333434344445554444

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.30  E-value=14  Score=29.34  Aligned_cols=54  Identities=30%  Similarity=0.343  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE  347 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~  347 (434)
                      .++..+-+.|...+..+...--+|+..+.+++.....+...+..+..+.+.++.
T Consensus        15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~   68 (74)
T PF12329_consen   15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE   68 (74)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433444444444444444444444444444444433

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK09039 hypothetical protein; Validated

Probab=84.29  E-value=42  Score=34.41  Aligned_cols=14  Identities=36%  Similarity=0.506  Sum_probs=8.0

Q ss_pred             HHHHH--HHHHHHHHH
Q psy18020        409 VRSLS--RKQFMFRAL  422 (434)
Q Consensus       409 vR~La--ReQF~~Ra~  422 (434)
                      |.+|+  |.+|+.|..
T Consensus       189 ~~~l~~~~~~~~~~l~  204 (343)
T PRK09039        189 VQELNRYRSEFFGRLR  204 (343)
T ss_pred             HHHHHHhHHHHHHHHH
Confidence            44554  467776653

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=84.23  E-value=47  Score=33.04  Aligned_cols=75  Identities=17%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHh
Q psy18020        278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER-SI--SFLKEKETELDEILAVL  352 (434)
Q Consensus       278 ~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~-~i--~~L~~~~~eLe~~I~~l  352 (434)
                      +..|+.+|.+.+.+.....-.++..+.+++.+|...-..++...+.|+..++.+-. .+  -.+..+.+.+.+.+..+
T Consensus        44 ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L  121 (291)
T PF10475_consen   44 LDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKL  121 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666667777777777778888899999999999998888888888888877655 33  34444444444554444

>KOG4460|consensus

Probab=84.22  E-value=31  Score=37.35  Aligned_cols=37  Identities=16%  Similarity=0.100  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      ++++++.+++....|++++++..++.+.|++.+..|.
T Consensus       607 ~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~  643 (741)
T KOG4460|consen  607 CREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL  643 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5555556666666666666666666666766666664

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=84.19  E-value=20  Score=31.82  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        311 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       311 ~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +..+..|+++.......-...++.|++|..+.+.+..|-.
T Consensus        60 ~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~   99 (135)
T TIGR03495        60 EEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD   99 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence            4455557777777777777777777777777777777754

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=84.04  E-value=22  Score=39.93  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        288 KMNEQKVQAQEEIEILKQTENELNQG-------KFKLARMFERIDKEKAELERSISFLK  339 (434)
Q Consensus       288 ~L~e~~~q~~~ele~L~~~q~EL~~~-------~~~L~~~~~eLe~~k~~Le~~i~~L~  339 (434)
                      ||...+.+++.|+...++...||+..       +..++.++..|+.+.+.|+..+..|.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~  480 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV  480 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34333444444444444444444443       23344444444444444444444333

; GO: 0016021 integral to membrane

>KOG0994|consensus

Probab=84.02  E-value=58  Score=38.42  Aligned_cols=47  Identities=15%  Similarity=0.083  Sum_probs=26.3

Q ss_pred             hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        383 ATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKH  429 (434)
Q Consensus       383 AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~  429 (434)
                      .+.++..-..+||+.+....-.--+-++.-.+.+=.++-++.||...
T Consensus      1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34455555555555544444444455556666666666677776654

>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=83.95  E-value=13  Score=34.54  Aligned_cols=18  Identities=22%  Similarity=0.372  Sum_probs=9.9

Q ss_pred             cCCCCHHHHHHHHHHHHH
Q psy18020        397 RGVIDLEVYLKQVRSLSR  414 (434)
Q Consensus       397 ~g~I~ld~flK~vR~LaR  414 (434)
                      ++.|+.+.-|+..|.||+
T Consensus        78 ~~~v~~~eLL~YA~rISk   95 (188)
T PF10018_consen   78 KRPVDYEELLSYAHRISK   95 (188)
T ss_pred             cCCCCHHHHHHHHHHHHH
Confidence            345555555555555554

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.91  E-value=19  Score=28.39  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV  351 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~  351 (434)
                      +..++++..++.++..    |+.....|..+...|+.....|+.+.....+-|..
T Consensus        14 ~~aveti~~Lq~e~ee----Lke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   14 QQAVETIALLQMENEE----LKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544    66666666666666666666666665555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.71  E-value=18  Score=35.09  Aligned_cols=55  Identities=25%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        291 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL  345 (434)
Q Consensus       291 e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL  345 (434)
                      +++..+.++++.+....+.|+...+++++.+..++.+...|++.+..++....++
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444455555555555555555555444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK11519 tyrosine kinase; Provisional

Probab=83.68  E-value=52  Score=37.13  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHH
Q psy18020        300 IEILKQTENELNQGKFKLARMFE-----RIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQI  374 (434)
Q Consensus       300 le~L~~~q~EL~~~~~~L~~~~~-----eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql  374 (434)
                      -+++..++.+|+..+.+|++...     .++.+...+-+.+..++++..+++..+..+..        .+....|...  
T Consensus       273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~--------~y~~~hP~v~--  342 (719)
T PRK11519        273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK--------LYTKEHPAYR--  342 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccCcHHH--
Confidence            34566666666666666555544     23344444444455555555555554444421        1223333333  


Q ss_pred             HHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        375 LNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFK  425 (434)
Q Consensus       375 ~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~K  425 (434)
                       ++.++..+|+.-+..+.+-+.    ++..--++.+.|-|++=..+.+-.-
T Consensus       343 -~l~~~~~~L~~~~~~l~~~~~----~lp~~e~~~~~L~Re~~~~~~lY~~  388 (719)
T PRK11519        343 -TLLEKRKALEDEKAKLNGRVT----AMPKTQQEIVRLTRDVESGQQVYMQ  388 (719)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHH
Confidence             334445555555544443332    3444556677777777666655443

>KOG4657|consensus

Probab=83.63  E-value=20  Score=34.52  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      -.+++++..++++-+++..+++.++++.+...++|..-
T Consensus        89 ~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~k  126 (246)
T KOG4657|consen   89 MGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQK  126 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44677777777777888888888888777776666543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.57  E-value=32  Score=30.70  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHH
Q psy18020        302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEE  381 (434)
Q Consensus       302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed  381 (434)
                      .+...-.+|+.....++.++..|+.....|+..+..+.++..++...+....... .+.+       -+-+.+ .++=++
T Consensus        18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E-------~l~rri-q~LEee   88 (143)
T PF12718_consen   18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAE-------QLNRRI-QLLEEE   88 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHH-------HHHhhH-HHHHHH
Confidence            3333444444444556666666666666666666666666666666555432211 1111       122211 111111


Q ss_pred             -HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy18020        382 -AATEDTIYYMGEALRRGVIDLEVYLKQVRSLSR  414 (434)
Q Consensus       382 -~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaR  414 (434)
                       ...+..+.-..+-|+.-.+-.+.|-|+|..|--
T Consensus        89 le~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~  122 (143)
T PF12718_consen   89 LEEAEKKLKETTEKLREADVKAEHFERKVKALEQ  122 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence             112223333333444445678888888887754

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=83.57  E-value=31  Score=41.12  Aligned_cols=39  Identities=10%  Similarity=0.058  Sum_probs=21.0

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQ  408 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~  408 (434)
                      +-.++-.+.+.-..+.|.+..+.+.+..-.-.+....+.
T Consensus       444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (1163)
T COG1196         444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE  482 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566666666666666666655443333333333

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=83.55  E-value=23  Score=29.05  Aligned_cols=9  Identities=22%  Similarity=0.685  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy18020        281 VEDKIRRKM  289 (434)
Q Consensus       281 l~dkL~~~L  289 (434)
                      |+..|.+++
T Consensus        20 LE~~v~~r~   28 (89)
T PF13747_consen   20 LEKAVDRRL   28 (89)
T ss_pred             HHHHHHHHH
Confidence            333333333

>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=83.51  E-value=16  Score=37.57  Aligned_cols=119  Identities=14%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA  382 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~  382 (434)
                      +.+..+.+......|.+.+..+++..+.|..+...+...++.+...+..+.+..+ ++|.++.....+.+++-+   .+.
T Consensus       164 l~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~-~l~~~~~~l~~l~~~~~~---~~~  239 (359)
T COG1463         164 LNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASD-QLDRLLDNLATLTAALAA---RRD  239 (359)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhh---chH
Confidence            4444555555555666666666666666666666666666666666665543222 455544333333333332   335


Q ss_pred             hhhhHHHHHHHH-------HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        383 ATEDTIYYMGEA-------LRRGVIDLEVYLKQVRSLSRKQFMFRALLFK  425 (434)
Q Consensus       383 AieDtiy~L~~a-------L~~g~I~ld~flK~vR~LaReQF~~Ra~~~K  425 (434)
                      +|.|++-.++.+       |.+.+-.|...+++.+.++..-.-.+.-+.+
T Consensus       240 ~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~  289 (359)
T COG1463         240 ALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQ  289 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence            666666666555       4455667777777766666555433333333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.47  E-value=20  Score=28.14  Aligned_cols=44  Identities=27%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        309 ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       309 EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ||+.....|..+..+++..++.|++.-+.|+.+....++.|..+
T Consensus        29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          29 ELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444666666666666666666666666666555555544

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=83.27  E-value=19  Score=28.47  Aligned_cols=57  Identities=30%  Similarity=0.430  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      .+.|++|..--..|....-++...+..|+.....++..+..|..+.++++.-+..++
T Consensus        11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666677778878888889999999999999999999888888888877764

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK12704 phosphodiesterase; Provisional

Probab=83.24  E-value=48  Score=35.99  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=16.2

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV  409 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~v  409 (434)
                      +-++|++.+ ++.+-.|+--.+.+.-+.-+-..|..-|.+
T Consensus       155 a~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i  193 (520)
T PRK12704        155 AKEILLEKV-EEEARHEAAVLIKEIEEEAKEEADKKAKEI  193 (520)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444433 334444444444444433333444444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=83.16  E-value=35  Score=37.01  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=11.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q psy18020        401 DLEVYLKQVRSLSRKQFMFRA  421 (434)
Q Consensus       401 ~ld~flK~vR~LaReQF~~Ra  421 (434)
                      +...++|..-.-+++.--.+|
T Consensus       164 ~~~~~~~~~~~~~~~~a~~~a  184 (514)
T TIGR03319       164 EAAKLIKEIEEEAKEEADKKA  184 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555544443

>KOG0250|consensus

Probab=83.04  E-value=44  Score=38.97  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCccccccccchHHHHHHHhhHHHHhhhhHHHHHH
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKT----EVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMG  392 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~----~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~  392 (434)
                      ++++..+++.+...++.++..++.+.+.+++.|..++...    ..+.+++=---.-|..+.-++--....+.+-+.-+.
T Consensus       349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~  428 (1074)
T KOG0250|consen  349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK  428 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666777778888888888888888777765322    112222100000122222222223334444444444


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        393 EALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCY  427 (434)
Q Consensus       393 ~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~  427 (434)
                      +++..+.=..+.-....+.|.|.+=..-.+|+-+.
T Consensus       429 ~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  429 EKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45554444455555566666666655555555554

>KOG2264|consensus

Probab=82.96  E-value=11  Score=40.75  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      ..|+-.+..-+.||+..-++++..+++|+++-..-+.++..|+.++++.+...+++..
T Consensus        92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~  149 (907)
T KOG2264|consen   92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE  149 (907)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3444444444445555444455555555554444445555566666666665555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.75  E-value=58  Score=33.00  Aligned_cols=13  Identities=15%  Similarity=0.378  Sum_probs=6.5

Q ss_pred             hhHHHHHHHhhhh
Q psy18020        135 KLEGLIKTLASAF  147 (434)
Q Consensus       135 ~l~~l~~~~~~~f  147 (434)
                      +|.++|..-+..|
T Consensus        15 sL~~FL~~~~I~F   27 (325)
T PF08317_consen   15 SLQDFLNMTGIRF   27 (325)
T ss_pred             CHHHHHHHhCcee
Confidence            3445555555555

>smart00503 SynN Syntaxin N-terminal domain

Probab=82.71  E-value=19  Score=30.00  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV  351 (434)
Q Consensus       288 ~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~  351 (434)
                      .+...+.++...+++|..++..+.............|+...+.+......+...+..|++....
T Consensus        12 ~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~   75 (117)
T smart00503       12 EIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLE   75 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            3344445555666677777766665433223344555556666666666666666666665543

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=82.64  E-value=21  Score=30.21  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI--DKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eL--e~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      .+...+...+ ..+++++.+.+..+++..+-.+++..++.|  ...-..|+-.+.+++.+.++++.-++.+
T Consensus        22 ~~~~~l~~~~-a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v   91 (106)
T PF10805_consen   22 IFWLWLRRTY-AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV   91 (106)
T ss_pred             HHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344443333 235666666666666666666676666666  6666667777777777777766666543

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=82.57  E-value=21  Score=40.75  Aligned_cols=64  Identities=27%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        281 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE  344 (434)
Q Consensus       281 l~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e  344 (434)
                      |.++-+..+.+....+...++.|.+.+.+++...+.++..+.++++.+.+++...+.|+++.++
T Consensus       503 ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~  566 (782)
T PRK00409        503 IIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK  566 (782)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334344444444444455555555555555555555555555555555555555554444333

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=82.48  E-value=9.8  Score=40.43  Aligned_cols=60  Identities=22%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARM-FERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~-~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      +.+..+.+.|++..+.|.+++..++.. ...|+.++.+++++.+.|+++..++...|..|.
T Consensus        76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752        76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555666666666666555333 355666677777777777777777766666664

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=82.43  E-value=28  Score=33.97  Aligned_cols=116  Identities=11%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHh--
Q psy18020        283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE--------TELDEILAVL--  352 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~--------~eLe~~I~~l--  352 (434)
                      +++..|+......+..+.+.+...-..|..-+..|..-+..+...-+.|...+..|.+.+        .++...+..+  
T Consensus        71 eki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~  150 (240)
T cd07667          71 DRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKN  150 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            455555544333344444444444444444444444444444444444444444444333        2222222222  


Q ss_pred             ----cCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC
Q psy18020        353 ----TEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG  398 (434)
Q Consensus       353 ----~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g  398 (434)
                          ++....|.++++...+.--..+=.|-++-..++|.+.++++.+++.
T Consensus       151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E  200 (240)
T cd07667         151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKAD  200 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2345567777655443334455566666677777776666666654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=82.26  E-value=38  Score=36.31  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=10.4

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      |..||-.|..-...|..--.-|.+||
T Consensus       170 L~~qi~~L~~~n~~i~~ea~nLt~AL  195 (475)
T PRK10361        170 LAHEIRNLQQLNAQMAQEAINLTRAL  195 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444333333333333344444

>PF15079 DUF4546: Domain of unknown function (DUF4546)

Probab=82.25  E-value=8.7  Score=35.13  Aligned_cols=56  Identities=16%  Similarity=0.369  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL  338 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L  338 (434)
                      ..|++.|+|-+..+.+.||.+.+.+.-+...+.+|...++-+.+.+...++-+..|
T Consensus        50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMDEKMDvL  105 (205)
T PF15079_consen   50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMDEKMDVL  105 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHhhhHH
Confidence            35777888888888888899999999999999888888877777666655544433

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=82.23  E-value=37  Score=31.02  Aligned_cols=101  Identities=13%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q psy18020        284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEA  363 (434)
Q Consensus       284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~  363 (434)
                      .|...-.+.+.-.+..-+.+..++.||..    ++..+.+.-.+-+.|+..-.....+..++.+.....   .+-||-++
T Consensus        10 ~ie~sK~qIf~I~E~~R~E~~~l~~EL~e----vk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y---sE~dik~A   82 (159)
T PF05384_consen   10 TIESSKEQIFEIAEQARQEYERLRKELEE----VKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY---SEEDIKEA   82 (159)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CHHHHHHH
Confidence            33333333333333333344445555555    444444444455555555555555555555544433   33477776


Q ss_pred             ccccchHHHHHHHhhHHHHhhhhHHHHH
Q psy18020        364 VTTTAPIYKQILNTFTEEAATEDTIYYM  391 (434)
Q Consensus       364 i~~~~~l~~Ql~~l~Aed~AieDtiy~L  391 (434)
                      ...+.-+.-+|.-+-.++.-+-.-=..|
T Consensus        83 Ye~A~~lQ~~L~~~re~E~qLr~rRD~L  110 (159)
T PF05384_consen   83 YEEAHELQVRLAMLREREKQLRERRDEL  110 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666555555555554443333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.02  E-value=12  Score=31.31  Aligned_cols=56  Identities=36%  Similarity=0.414  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        295 QAQEEIEILKQTENELNQGKFKLAR---MFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       295 q~~~ele~L~~~q~EL~~~~~~L~~---~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      ++..+++.|++.++++...-.++..   ...+|..+...+...+..++.+..++++-+.
T Consensus        40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~   98 (108)
T PF02403_consen   40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN   98 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555444333322   2344555555555555555555555554443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK14143 heat shock protein GrpE; Provisional

Probab=81.92  E-value=21  Score=34.75  Aligned_cols=53  Identities=9%  Similarity=0.004  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       298 ~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ...+++.++++++..-+.+.++++.++..  ..+++.+..|-.-.+.|++.+..+
T Consensus        85 elkd~~lR~~AdfeN~RKR~~kE~e~~~~--~a~~~~~~~lLpV~DnLerAl~~~  137 (238)
T PRK14143         85 ELNSQYMRIAADFDNFRKRTSREQEDLRL--QLKCNTLSEILPVVDNFERARQQL  137 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHhcc
Confidence            33445566666666655555555544332  445555666666666666666543

>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences

Probab=81.91  E-value=15  Score=33.31  Aligned_cols=83  Identities=18%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhh
Q psy18020        303 LKQTENELNQGKFKLARMFERI----DKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTF  378 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eL----e~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~  378 (434)
                      +..++..|....++|+....++    ...++.|+..++.|-.+.+.+.+-|.....+-.-++..       +.+|+||-+
T Consensus        65 l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~-------~~K~~~D~~  137 (155)
T PF07464_consen   65 LKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQP-------AIKQAYDDA  137 (155)
T ss_dssp             HHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHH
Confidence            4555556666555555443333    33567777788888888888887777554444446666       788888876


Q ss_pred             HHHHhhhhHHHHHHHH
Q psy18020        379 TEEAATEDTIYYMGEA  394 (434)
Q Consensus       379 Aed~AieDtiy~L~~a  394 (434)
                      .+  +.+++...|..|
T Consensus       138 ~k--~~~~~~~~l~~a  151 (155)
T PF07464_consen  138 VK--AAQKVQKQLHEA  151 (155)
T ss_dssp             HH--HHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHh
Confidence            54  345555555444

Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.77  E-value=80  Score=33.99  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=6.8

Q ss_pred             CCCHHHHHHHHHHHh
Q psy18020         62 NSKLEGLIKTLASAF   76 (434)
Q Consensus        62 ~s~L~~li~~l~~~F   76 (434)
                      ++-=..++..+.-+|
T Consensus        37 G~GKStll~aI~~~l   51 (562)
T PHA02562         37 GAGKSTMLEALTFAL   51 (562)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            444444454444333

>KOG4360|consensus

Probab=81.77  E-value=52  Score=35.39  Aligned_cols=31  Identities=26%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        398 GVIDLEVYLKQVRSLSRKQFMFRALLFKCYK  428 (434)
Q Consensus       398 g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~  428 (434)
                      -+|..+.|=..+-.++|.||-.=-+-++|+.
T Consensus       380 l~i~~~ny~~~~~tv~~~~v~tp~lqq~~n~  410 (596)
T KOG4360|consen  380 LVIPGSNYSSQQQTVARLQVQTPKLQQRCNM  410 (596)
T ss_pred             ccCCcchhhhhhhhhhhhhccchhHHhHHHH
Confidence            4789999999999999999987767777764

>PRK14143 heat shock protein GrpE; Provisional

Probab=81.72  E-value=32  Score=33.52  Aligned_cols=31  Identities=13%  Similarity=0.100  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHH
Q psy18020        386 DTIYYMGEALRRGVI---DLEVYLKQVRSLSRKQF  417 (434)
Q Consensus       386 Dtiy~L~~aL~~g~I---~ld~flK~vR~LaReQF  417 (434)
                      +.+.-|.|||.....   +.+.|.+.+..+ ++||
T Consensus       125 pV~DnLerAl~~~~~~~~~~~~l~~Gve~i-~k~l  158 (238)
T PRK14143        125 PVVDNFERARQQLKPEGEEAQALHRSYQGL-YKQL  158 (238)
T ss_pred             HHHhHHHHHHhcccccchhHHHHHHHHHHH-HHHH
Confidence            445556666654322   234555555544 3344

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=81.61  E-value=30  Score=32.56  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=9.6

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGE  393 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~  393 (434)
                      +..+|=.+-++=.+-+.-|--|.+
T Consensus       123 L~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen  123 LQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444433333333333333

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=81.59  E-value=58  Score=36.24  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLAR---MFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~---~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      .+.+.|+ +|+..+.+....++..+..+.....+.+...+++.+   ..-=|++....|+....+|.+-...|...++.+
T Consensus        83 ~L~~eve-rLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~  161 (632)
T PF14817_consen   83 ELEKEVE-RLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQL  161 (632)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334343 666666555554444444444444444433333222   223356666777777777777777777766665


Q ss_pred             c
Q psy18020        353 T  353 (434)
Q Consensus       353 ~  353 (434)
                      .
T Consensus       162 q  162 (632)
T PF14817_consen  162 Q  162 (632)
T ss_pred             H
Confidence            4

>PRK10698 phage shock protein PspA; Provisional

Probab=81.55  E-value=39  Score=32.46  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE  347 (434)
Q Consensus       278 ~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~  347 (434)
                      .+.+.+.++..+++.+...++=.+.|...-.++...-.+++..+...-..+..++..+..+....++.++
T Consensus         4 f~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~   73 (222)
T PRK10698          4 FSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE   73 (222)
T ss_pred             HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666655544445555555555555557777777777777777776666666555544

>TIGR00606 rad50 rad50

Probab=81.54  E-value=28  Score=42.03  Aligned_cols=120  Identities=11%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcC-CCCCCccccccccchHHHHH
Q psy18020        298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL--KEKETELDEILAVLTE-KTEVDVDEAVTTTAPIYKQI  374 (434)
Q Consensus       298 ~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L--~~~~~eLe~~I~~l~~-k~~~diDe~i~~~~~l~~Ql  374 (434)
                      ..++.+...+.++...-..++..+..++..+..+..++..+  ..++.+++.-|..++. ..+.|.+++-.--.-+..++
T Consensus       984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~ 1063 (1311)
T TIGR00606       984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENI 1063 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            33444444455555555557777788888888888888887  6667777777777652 23345554433333344444


Q ss_pred             HHhh-------HHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        375 LNTF-------TEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALL  423 (434)
Q Consensus       375 ~~l~-------Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~  423 (434)
                      =.+.       .+-..+++-|..|.+-|+.      .=.|.+..=.|++++...+.
T Consensus      1064 ~~l~~~~a~l~g~~k~le~qi~~l~~eL~e------~~yk~a~~ryrka~i~~~~~ 1113 (1311)
T TIGR00606      1064 DLIKRNHVLALGRQKGYEKEIKHFKKELRE------PQFRDAEEKYREMMIVMRTT 1113 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHH
Confidence            3333       4444566666666666643      22344444445555444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []

Probab=81.26  E-value=48  Score=31.11  Aligned_cols=88  Identities=15%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHH
Q psy18020        325 DKEKAELERSISFLKEKETELDEILAVLTEK-TEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLE  403 (434)
Q Consensus       325 e~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k-~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld  403 (434)
                      ....-.....+..+..-++.|..++..+... .+.++...+.     .-..+-...|-..+|+++  +..+|.+|.++-+
T Consensus        82 d~~~~~~~~~~~~Y~~~i~~ll~~~~~l~~~~~d~~l~~~~~-----a~~~l~~a~E~~~~era~--~~~~l~~~~~~~~  154 (247)
T PF08376_consen   82 DNRSIDPDEAFDAYTELIDSLLDLIDALAQQSDDPELARQLR-----ALTALLRAKEYAGQERAL--LAGALAAGRLSPE  154 (247)
T ss_dssp             HHT-S-HHHHHHHHHHHHHHHHTHHHHHHCC---HHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHT---HH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHhhcCCCHH
Confidence            3333344455666676777777777766443 3334433221     222234466777788874  6778899999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18020        404 VYLKQVRSLSRKQFMF  419 (434)
Q Consensus       404 ~flK~vR~LaReQF~~  419 (434)
                      .|.+-++..++.+...
T Consensus       155 ~~~~~~~~~~~~~~~l  170 (247)
T PF08376_consen  155 ELRQFASLIARQRAAL  170 (247)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888888765544

The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=81.10  E-value=15  Score=32.29  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=25.5

Q ss_pred             hHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020        369 PIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK  415 (434)
Q Consensus       369 ~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe  415 (434)
                      .+-.-+=.+-.+-..+++.+.-|.+.|..-.=.++...+.+..|+.+
T Consensus        91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555566666666666666654433455555555555443

>KOG0982|consensus

Probab=81.04  E-value=20  Score=37.49  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA  394 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a  394 (434)
                      +.|+.+..+|+.....|+..+.+|.++...+...|+.++.....+-+.-+.-.+.|.+-.-+.-|-..-|+|.+.-|.++
T Consensus       307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehl  386 (502)
T KOG0982|consen  307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHL  386 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33555556666666666666666666655555555555433333333333233333332222223333444444433332


Q ss_pred             H---------hcC-----CCCHHHHHHHHHH
Q psy18020        395 L---------RRG-----VIDLEVYLKQVRS  411 (434)
Q Consensus       395 L---------~~g-----~I~ld~flK~vR~  411 (434)
                      =         .+|     .|.|+.++|..|.
T Consensus       387 r~~kl~~a~p~rgrsSaRe~eleqevkrLrq  417 (502)
T KOG0982|consen  387 RRRKLVLANPVRGRSSAREIELEQEVKRLRQ  417 (502)
T ss_pred             HHHHHHhhccccCchhHHHHHHHHHHHHhcc
Confidence            1         111     3456777776664

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=80.88  E-value=95  Score=34.34  Aligned_cols=26  Identities=4%  Similarity=-0.068  Sum_probs=14.9

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      -.+.|.+|..+......-+----+.|
T Consensus       406 s~~rl~~L~~qWe~~R~pL~~e~r~l  431 (594)
T PF05667_consen  406 SEQRLVELAQQWEKHRAPLIEEYRRL  431 (594)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45677777777766554443333333

>PRK09039 hypothetical protein; Validated

Probab=80.84  E-value=52  Score=33.71  Aligned_cols=27  Identities=19%  Similarity=0.046  Sum_probs=13.9

Q ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020        370 IYKQILNTFTEEAATEDTIYYMGEALR  396 (434)
Q Consensus       370 l~~Ql~~l~Aed~AieDtiy~L~~aL~  396 (434)
                      .+.|+-.|-++-.|++.-|..|..+|.
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~  161 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALD  161 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=80.83  E-value=41  Score=31.78  Aligned_cols=22  Identities=9%  Similarity=0.200  Sum_probs=8.7

Q ss_pred             HHHHHHhhHHHHhhhhHHHHHH
Q psy18020        371 YKQILNTFTEEAATEDTIYYMG  392 (434)
Q Consensus       371 ~~Ql~~l~Aed~AieDtiy~L~  392 (434)
                      +..+=+-+.+-.|--++...|.
T Consensus       167 ~er~e~ki~~~ea~a~a~~el~  188 (221)
T PF04012_consen  167 FERMEEKIEEMEARAEASAELA  188 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3334344444344444444333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.65  E-value=26  Score=27.53  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=16.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        309 ELNQGKFKLARMFERIDKEKAELERSISFLKEKE  342 (434)
Q Consensus       309 EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~  342 (434)
                      ++....+.|+++-+.|+.+....+..+..|-.+.
T Consensus        43 ~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm   76 (79)
T COG3074          43 NAQHQREALERENEQLKEEQNGWQERLRALLGKM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3334444455555555555555555555444433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.60  E-value=46  Score=31.13  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        316 KLARMFERIDKEKAELERSISFLKEKETELDEIL  349 (434)
Q Consensus       316 ~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I  349 (434)
                      .++..+..|+.+...|+..+..|..+.+.+++..
T Consensus       124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~  157 (189)
T PF10211_consen  124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE  157 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555544444444444433

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.42  E-value=43  Score=33.12  Aligned_cols=56  Identities=29%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       295 q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .++.+++.|...-.++......++..+.+++.+..+++..|..+++.+.+-++.+.
T Consensus        49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~  104 (265)
T COG3883          49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK  104 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445554444444444444444455555555555555555555554444444443

>KOG0993|consensus

Probab=80.21  E-value=46  Score=34.82  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA  382 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~  382 (434)
                      |..+++++...+..+...+.+|-.-...+.....+|++..+-+... ..++..-.-.-+..+-++.+...|+|-+..+|.
T Consensus       347 l~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~-~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~  425 (542)
T KOG0993|consen  347 LVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTV-GELETQVQQAEVQNLPAAVEQLAQLYKQRRTSL  425 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccccchhHhhhhcchhhHHHHHHHHHHHHHHH
Confidence            6677888888888888888888877777777777777665554321 111110000122334455667788887776664


Q ss_pred             -hhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18020        383 -ATEDTIYYMGEALRRGVIDLEVYLKQVRS  411 (434)
Q Consensus       383 -AieDtiy~L~~aL~~g~I~ld~flK~vR~  411 (434)
                       +--||-.|..+-|....++|-.-|...|.
T Consensus       426 ~~~l~a~ehv~e~l~~ei~~L~eqle~e~~  455 (542)
T KOG0993|consen  426 QQELDASEHVQEDLVKEIQSLQEQLEKERQ  455 (542)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34466666666666666666555555543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=80.15  E-value=60  Score=38.07  Aligned_cols=9  Identities=22%  Similarity=0.246  Sum_probs=4.4

Q ss_pred             CCCHHHHHH
Q psy18020         62 NSKLEGLIK   70 (434)
Q Consensus        62 ~s~L~~li~   70 (434)
                      +|||++.|.
T Consensus        36 KS~ildAi~   44 (1164)
T TIGR02169        36 KSNIGDAIL   44 (1164)
T ss_pred             HHHHHHHHH
Confidence            455555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=80.15  E-value=33  Score=28.54  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy18020        327 EKAELERSISFLKEKETELDE  347 (434)
Q Consensus       327 ~k~~Le~~i~~L~~~~~eLe~  347 (434)
                      .-.+|+..+..|++-..+|+.
T Consensus        74 ~V~~LE~~v~~LD~ysk~LE~   94 (99)
T PF10046_consen   74 QVTELEQTVYELDEYSKELES   94 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=80.14  E-value=30  Score=31.18  Aligned_cols=92  Identities=23%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy18020        285 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK----EKAELERSISFLKEKETELDEILAVLTEKTEVDV  360 (434)
Q Consensus       285 L~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~----~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~di  360 (434)
                      ++.+...++.+.+.+-++|..++.+|+.-..=.+.++.-++.    ...+|+-..+..+.+..+...|++....+..   
T Consensus        50 VrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk---  126 (159)
T PF04949_consen   50 VREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK---  126 (159)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            455556666777777777888888887655334444433333    3333444444555667777777776643221   


Q ss_pred             cccccccchHHHHHHHhhHHHHhh
Q psy18020        361 DEAVTTTAPIYKQILNTFTEEAAT  384 (434)
Q Consensus       361 De~i~~~~~l~~Ql~~l~Aed~Ai  384 (434)
                           ..+-|...|.+||.+-..+
T Consensus       127 -----eK~~Lv~~L~eLv~eSE~~  145 (159)
T PF04949_consen  127 -----EKAQLVTRLMELVSESERL  145 (159)
T ss_pred             -----HHHHHHHHHHHHHHHHHHH
Confidence                 1234667778888776543

This entry represents proteins annotated as RAB6-interacting golgins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
2f0r_A	159	Crystallographic Structure Of Human Tsg101 Uev Doma		7e-19
2f0r_A	159	Crystallographic Structure Of Human Tsg101 Uev Doma		4e-08
3obq_A	146	Crystal Structure Of The Tsg101 Uev Domain In Compl		8e-19
3obq_A	146	Crystal Structure Of The Tsg101 Uev Domain In Compl		5e-08
3p9g_A	145	Crystal Structure Of The Tsg101 Uev Domain In Compl		9e-19
3p9g_A	145	Crystal Structure Of The Tsg101 Uev Domain In Compl		4e-08
1kpp_A	145	Structure Of The Tsg101 Uev Domain Length = 145		9e-19
1kpp_A	145	Structure Of The Tsg101 Uev Domain Length = 145		4e-08
1s1q_A	145	Tsg101(Uev) Domain In Complex With Ubiquitin Length		1e-17
1s1q_A	145	Tsg101(Uev) Domain In Complex With Ubiquitin Length		7e-07
3iv1_A	78	Coiled-Coil Domain Of Tumor Susceptibility Gene 101		4e-09
2p22_A	174	Structure Of The Yeast Escrt-i Heterotetramer Core		7e-04
2caz_A	82	Escrt-I Core Length = 82		8e-04
2f66_A	65	Structure Of The Escrt-I Endosomal Trafficking Comp		9e-04

>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain Length = 159

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W    S L
Sbjct: 79  GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL 138
Query: 66  EGLIKTLASAFSALPPLYS 84
            GLI+ +   F   PP++S
Sbjct: 139 LGLIQVMIVVFGDEPPVFS 157

>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain Length = 159

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 103 VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 157

>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With A Human Hrs Psap Peptide Length = 146

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W    S L
Sbjct: 66  GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL 125
Query: 66  EGLIKTLASAFSALPPLYS 84
            GLI+ +   F   PP++S
Sbjct: 126 LGLIQVMIVVFGDEPPVFS 144

>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With A Human Hrs Psap Peptide Length = 146

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 90  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 144

>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With Fa459 Peptide Length = 145

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W    S L
Sbjct: 65  GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL 124
Query: 66  EGLIKTLASAFSALPPLYS 84
            GLI+ +   F   PP++S
Sbjct: 125 LGLIQVMIVVFGDEPPVFS 143

>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With Fa459 Peptide Length = 145

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 89  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 143

>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain Length = 145

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
           G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W    S L
Sbjct: 65  GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL 124
Query: 66  EGLIKTLASAFSALPPLYS 84
            GLI+ +   F   PP++S
Sbjct: 125 LGLIQVMIVVFGDEPPVFS 143

>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain Length = 145

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 89  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 143

>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 145

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Query: 1   MTNLSGLV--------YHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYS 52
           + NL+G +        Y+IP+C+WL+DT+P + PIC+V+PT+   I   ++VD  GKIY 
Sbjct: 52  LXNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSXTIKTGKHVDANGKIYL 111
Query: 53  PYLHTWTPQNSKLEGLIKTLASAFSALPPLYS 84
           PYLH W    S L GLI+     F   PP++S
Sbjct: 112 PYLHEWKHPQSDLLGLIQVXIVVFGDEPPVFS 143

>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 145

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+   I   ++VD  GKIY PYLH W    S L GLI+     F   PP++S
Sbjct: 89  VKPTSSXTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVXIVVFGDEPPVFS 143

>pdb|3IV1|A Chain A, Coiled-Coil Domain Of Tumor Susceptibility Gene 101 Length = 78

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
           SL SAV DK+R +  E+  +AQ E+  LK+TE +L +G  KL     R+D+E AE++++I
Sbjct: 3   SLISAVSDKLRWRXKEEXDRAQAELNALKRTEEDLKKGHQKLEEXVTRLDQEVAEVDKNI 62
Query: 336 SFLKEKETELDEIL 349
             LK+K+ EL   L
Sbjct: 63  ELLKKKDEELSSAL 76

>pdb|2P22|A Chain A, Structure Of The Yeast Escrt-i Heterotetramer Core Length = 174

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 373 QILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
           Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R
Sbjct: 116 QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 163

>pdb|2CAZ|A Chain A, Escrt-I Core Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 373 QILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
           Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R
Sbjct: 24  QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 71

>pdb|2F66|A Chain A, Structure Of The Escrt-I Endosomal Trafficking Complex Length = 65

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 373 QILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
           Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R
Sbjct: 7   QLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVR 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	1e-46
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	2e-26
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	3e-13
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	3e-26
2f6m_A	65	Suppressor protein STP22 of temperature-sensitive	2e-25
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	1e-21
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	5e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	9e-08
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-04
1u00_A	227	HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	5e-04

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A Length = 174

 Score =  157 bits (399), Expect = 1e-46
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 9/179 (5%)

Query: 253 VPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQ 312
           +   +    + +  T+ +E  +  +    +  + R+   Q        E + +    +  
Sbjct: 5   ISPTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQ--------ESIARFHEIIAI 56

Query: 313 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYK 372
            K  L  + + I++    L   I  L     ++ +  +  +   + DV+           
Sbjct: 57  DKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSS-TSHVDDEDVNSIAVAKTDGLN 115

Query: 373 QILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS 431
           Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R  + +    +S
Sbjct: 116 QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPLS 174

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score =  103 bits (257), Expect = 2e-26
 Identities = 38/83 (45%), Positives = 53/83 (63%)

Query: 2   TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQ 61
               G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W   
Sbjct: 62  VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 121

Query: 62  NSKLEGLIKTLASAFSALPPLYS 84
            S L GLI+ +   F   PP++S
Sbjct: 122 QSDLLGLIQVMIVVFGDEPPVFS 144

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 90  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 144

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} Length = 78

 Score =   99 bits (249), Expect = 3e-26
 Identities = 34/75 (45%), Positives = 50/75 (66%)

Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
           SL SAV DK+R +M E+  +AQ E+  LK+TE +L +G  KL  M  R+D+E AE++++I
Sbjct: 3   SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62

Query: 336 SFLKEKETELDEILA 350
             LK+K+ EL   L 
Sbjct: 63  ELLKKKDEELSSALE 77

>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A* Length = 65

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 369 PIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
               Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R  + +   
Sbjct: 3   DGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITS 62

Query: 429 HIS 431
            +S
Sbjct: 63  PLS 65

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162

 Score = 90.4 bits (224), Expect = 1e-21
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 1   MTNLSGLVYHIPVCIWLMDTHPDHAPICYVR------PTADMRINVSQNVDHTGKIYSPY 54
                   + IPV +W+   +P   P   +        T    + + + +D  G I  P 
Sbjct: 73  TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPI 132

Query: 55  LHTWTPQNSKLEGLIKTLASAFSALPPLYSS 85
           LH W P    L  +++ L S     PP   +
Sbjct: 133 LHAWDPAAMNLIMVVQELMSLLHE-PPQDQA 162

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 91  PATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSAL 150
           P  +         T    + + + +D  G I  P LH W      L  +++ L S     
Sbjct: 98  PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHE- 156

Query: 151 PPLYSS 156
           PP   +
Sbjct: 157 PPQDQA 162

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%)

Query: 73   ASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQ 132
            + A+    P YS  +     T+P+Y     PT+      S +   T   YSP     T+ 
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSATSPSYSP-----TSP 1618

Query: 133  NSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPY-----PTQSYMPMP 187
            +          + ++S   P YS  +     T+P+Y+    S +P      PT       
Sbjct: 1619 SYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1672

Query: 188  GSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPGGS- 245
              + +   P+Y P++ P Y+P + +    S   S  +P  +P +  YSP  P Y P    
Sbjct: 1673 SPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1731

Query: 246  -TPATPYPVPTPSPAPAVTS 264
             +P +P   PT SP+ + TS
Sbjct: 1732 YSPTSPSYSPT-SPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 146  AFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPG 205
            ++S   P YS  +   P+ +PT      ++  Y   S    P S   +P         P 
Sbjct: 1612 SYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668

Query: 206  YNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPGGST--PATPYPVPTPSPAPAV 262
            Y+P + +    S   S  +P  +P +  YSP  P Y P   +  P +P   PT SP+ + 
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 1727

Query: 263  TSGG 266
            TS  
Sbjct: 1728 TSPS 1731

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 27/132 (20%), Positives = 39/132 (29%), Gaps = 24/132 (18%)

Query: 154  YSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY-----PGYNP 208
            Y      +     + +    S    P                     S Y     PGY  
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFS----PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTS 1541

Query: 209  NAAAAPSGSIYPSYP-----------TPGATPGAGGYSPY-PLYPPGGST--PATPYPVP 254
              ++A S     + P           +P   P +  YSP  P Y P   +  P +P   P
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSP 1601

Query: 255  TPSPAPAVTSGG 266
            T SP+ + TS  
Sbjct: 1602 T-SPSYSATSPS 1612

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 40/141 (28%), Positives = 54/141 (38%), Gaps = 24/141 (17%)

Query: 144  ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY 203
            A+AFS   PL    ++             AS            P S+  +P       +Y
Sbjct: 1502 AAAFS---PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSY 1558

Query: 204  ----PGYNPNAAAAPSGSIY----PSY-PT-PGATPGAGGYSPY--------PLYPPG-- 243
                PGY+ + A  PS   Y    PSY PT P  +P +  YSP         P Y P   
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618

Query: 244  GSTPATPYPVPTPSPAPAVTS 264
              +P +P   PT SP+ + TS
Sbjct: 1619 SYSPTSPSYSPT-SPSYSPTS 1638

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 151  PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYM---PMPGSNVNTPYPTYPPSAYPGYN 207
              +      Q+    P  N +   NA    +  +   P+  S  N        +AY G +
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAG-GFTAYGGAD 1515

Query: 208  PNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPP--GGSTPATPYPVPTPSPAPAVTS 264
               A +P G+   +  +PG    + G+SP  P Y P     +P +P   PT SP+ + TS
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPT-SPSYSPTS 1574

Query: 265  GG 266
              
Sbjct: 1575 PS 1576

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 33/220 (15%)

Query: 51   YSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRIN 110
             SP     +P  S         + A+S   P YS  +     T+P+Y+    PT+     
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSP 1586

Query: 111  VSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYN- 169
             S +   T   YSP   +++             + ++S   P YS  +     T+P+Y+ 
Sbjct: 1587 TSPSYSPTSPSYSPTSPSYSPT-----------SPSYSPTSPSYSPTSPSYSPTSPSYSP 1635

Query: 170  ---GNMASNAPYPTQSYMPMPGSNVNTPY--------PTYPPSAYPGYNPNAAAAPSGSI 218
                   ++  Y   S    P S   +P         P+Y P++ P Y+P + +    S 
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTS- 1693

Query: 219  YPSY-PT-PGATPGAGGYSP-YPLYPPGGSTPATPYPVPT 255
             P+Y PT P  +P + GYSP  P Y P            +
Sbjct: 1694 -PNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 30/208 (14%)

Query: 73   ASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQ 132
             +         +  +     ++P ++    PT+      S     T   YSP   +++  
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSSPGFS----PTSPTYSPTSPAYSPTSPSYSPTSPSYSP- 1572

Query: 133  NSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAP----YPTQSYMPMPG 188
                       + ++S   P YS  +     T+P+Y+    S +P    Y   S    P 
Sbjct: 1573 ----------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1622

Query: 189  SNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPG---- 243
            S   +P         P Y+P + +    S   S  +P  +P +  YSP  P Y P     
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 244  -----GSTPATPYPVPTPSPAPAVTSGG 266
                   +P +P   PT SP+ + TS G
Sbjct: 1683 SPTSPSYSPTSPNYSPT-SPSYSPTSPG 1709

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 22/207 (10%)

Query: 75   AFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNS 134
             F    P +S  +   P  +PT      PT+      S +   T   YSP   +++  + 
Sbjct: 1534 GFGVSSPGFSPTS---PTYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589

Query: 135  KLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTP 194
                     + ++S   P YS  +     T+P+Y+    S +  PT         + +  
Sbjct: 1590 SYSPT----SPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPT 1643

Query: 195  YPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY--------PLYPPGGST 246
             P+Y P++ P Y+P + A    S   S  +P  +P +  YSP         P Y P   +
Sbjct: 1644 SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPS 1702

Query: 247  --PATPYPVPTPSPAPAVTSGGTITDE 271
              P +P   P  SPA +        +E
Sbjct: 1703 YSPTSPGYSPG-SPAYSPKQDEQKHNE 1728

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 144  ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY 203
               FS  P + S            Y G     A  P  +Y   P S      P +  S+ 
Sbjct: 1489 ELMFS--PLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS------PGFGVSS- 1539

Query: 204  PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP-YPLYPPGGS--TPATPYPVPTP---- 256
            PG++P +      S   S  +P  +P +  YSP  P Y P     +P +P   PT     
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1599

Query: 257  --SPAPAVTS 264
              SP+ + TS
Sbjct: 1600 PTSPSYSPTS 1609

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 16/166 (9%)

Query: 116  DHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASN 175
            + +G + +          S L       A A        +   +             +  
Sbjct: 1475 NESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPG 1534

Query: 176  APYPTQSYMPM------------PGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYP 223
                +  + P             P S   +P         P Y+P + +    S   S  
Sbjct: 1535 FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1594

Query: 224  TPGATPGAGGYSPY-PLYPPG--GSTPATPYPVPTPSPAPAVTSGG 266
            +P  +P +  YSP  P Y P     +P +P   PT SP+ + TS  
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPS 1639

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 17/133 (12%), Positives = 30/133 (22%)

Query: 141 KTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPP 200
           K      + L    ++   Q+PA         A+   Y      P              P
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64

Query: 201 SAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
           +    +     A  S +    +  P   P A      P+                    P
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124

Query: 261 AVTSGGTITDEHI 273
           +   G  +   + 
Sbjct: 125 SAAMGQNMRPMNQ 137

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
           +E  ++       +  R+++ E+ V   +E   L+                 +++ K K 
Sbjct: 20  EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKI 79

Query: 330 ELERSISFLKEKETELDEILAVLTE---KTEVDVDE 362
           +LE  +  + ++  + +E+ A LT    K E +  E
Sbjct: 80  QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 46/265 (17%), Positives = 72/265 (27%), Gaps = 86/265 (32%)

Query: 234 YSPY--PLYPPGGSTPATPYPVPTP-------------SPAPAVT------SGGTITDEH 272
           Y      LY    +     Y V                 PA  V       SG       
Sbjct: 112 YIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------- 162

Query: 273 IKMSLKSAV--EDKIRRKMNEQ----KV-QAQEEIEILKQTEN-------ELNQGKFKLA 318
            K  +   V    K++ KM+ +     +        +L+  +                 +
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 319 RMFERIDKEKAELERSISFLKEKETE-----LDE---------------ILAVLTEKTEV 358
            +  RI   +AEL R    LK K  E     L                 IL + T   +V
Sbjct: 222 NIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQV 277

Query: 359 -DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV--RSLSRK 415
            D   A TTT         T T +         + + L     DL   +     R LS  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRRLS-- 331

Query: 416 QFMFRALL------FKCYKHISYAR 434
             +    +      +  +KH++  +
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDK 354

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 10/75 (13%), Positives = 31/75 (41%)

Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
           D I++KM   K+  +  ++   + E +    + +  ++ + +   + +L+ +   L +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 343 TELDEILAVLTEKTE 357
             L +    L    +
Sbjct: 62  EALKDAQEKLELAEK 76

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 274 KM-SLKSAVEDKIRR--KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
           KM  LK   E+ + R  +    K  A++     KQ E+EL   + KL    + +DK    
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDR---SKQLEDELVSLQKKLKATEDELDKYSEA 63

Query: 331 LERSISFLKEKETELDE 347
           L+ +   L+  E +  +
Sbjct: 64  LKDAQEKLELAEKKATD 80

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
           SL++  E     K ++++ + +EEI++L     E         R   +++K   +LE  +
Sbjct: 206 SLEAQAE-----KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260

Query: 336 SFLKEK----ETELDEILAVLTE 354
              K K      ELD  L  +T 
Sbjct: 261 YAQKLKYKAISEELDHALNDMTS 283

>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 15/93 (16%)

Query: 262 VTSGGTITDEHI-KM---SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL 317
           V     +TD  I  M   S+  A +D   R + EQKV+A   +E        L      L
Sbjct: 110 VKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLE---SLHGALAADAALL 166

Query: 318 ARMFERIDKEKAELERSISFLKE--KETELDEI 348
           +        E+  ++ + + L E  +  ++D I
Sbjct: 167 S------AAERQVIDDAAAHLSEVAQGDDVDAI 193

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 34/102 (33%)

Query: 295 QAQEEIEILK--QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK-ETELDEILAV 351
           +  +E E ++  + E              +R+ +  A  +      +EK + +L+E    
Sbjct: 79  RLTQEPESIRKWREEQR------------KRLQELDAASKVMEQEWREKAKKDLEEWNQR 126

Query: 352 LTEKTEVDVDEAVTTTAPIYKQILNTFTEEAA-----TEDTI 388
            +E+ E              K  +N    + A       D I
Sbjct: 127 QSEQVE--------------KNKINNRIADKAFYQQPDADII 154

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKV-------QAQEEIEILKQTENELNQGKFKLARMFE 322
            ++ ++      E + R   +E            QEE++ LK    ++   + +   M  
Sbjct: 69  KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128

Query: 323 RIDKEKAELERSISF--------LKEKETELDEILAVLTE 354
             +KEK  LE  +++        L+++  E     A LT+
Sbjct: 129 HSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLTD 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	100.0
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.96
2f6m_A	65	Suppressor protein STP22 of temperature-sensitive	99.95
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.82
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.51
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	99.46
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	98.75
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	97.85
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	97.84
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	97.83
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	97.8
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	97.74
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	97.73
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	97.68
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	97.67
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	97.66
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	97.65
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	97.62
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	97.61
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	97.61
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	97.6
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	97.57
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	97.56
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	97.54
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	97.54
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	97.53
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	97.52
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	97.47
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	97.47
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	97.43
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	97.4
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	97.37
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	97.37
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	97.34
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	97.33
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	97.25
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	97.23
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	97.23
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	97.22
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	97.22
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	97.21
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	97.15
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	97.14
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	97.13
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	97.08
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	97.05
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	97.03
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	97.02
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	97.01
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	96.98
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	96.86
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	96.86
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	96.8
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	96.54
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	96.47
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	96.46
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	96.42
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	96.33
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	96.28
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	96.23
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	95.04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	94.61
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.31
1m9i_A	672	Annexin VI; calcium-binding, membrane-binding, pho	93.76
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.27
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	92.49
1m9i_A	672	Annexin VI; calcium-binding, membrane-binding, pho	91.99
2hyv_A	308	Annexin A2; calcium-binding protein, membrane-bind	91.64
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.45
1axn_A	323	Annexin III; annexin family, calcium/phospholipid-	91.38
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.17
1hm6_A	346	Annexin 1; phospholipid/Ca(2+)-binding protein, ca	90.91
2zhj_A	322	Annexin A4; zynogen granule, membrane binding prot	90.87
1yii_A	320	Annexin A5, annexin V, lipocortin V, endonexin II;	90.49
2ii2_A	310	Alpha-11 giardin; helix-turn-helix, metal binding	90.33
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	89.77
1w3w_A	327	Annexin A8; coagulation, annexin family, calcium a	89.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.72
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	88.56
1dm5_A	315	Annexin XII E105K mutant homohexamer; novel PH-dep	88.44
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.32
4evf_A	295	Alpha-1 giardin, giardin subunit alpha-1; annexin,	87.81
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.1
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	86.88
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	86.84
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.75
1n00_A	321	Annexin GH1; membrane-binding, calcium-binding, me	86.56
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	86.29
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.93
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	85.9
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	85.83
1pl5_A	142	Regulatory protein SIR4; parallel coiled coil homo	85.33
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	85.14
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.61
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	84.6
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	84.13
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.13
1nyh_A	166	Regulatory protein SIR4; coiled-coil, transcriptio	84.1
4dvz_A	569	Cytotoxicity-associated immunodominant antigen; on	83.85
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.66
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.37
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	83.33
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.89
3uux_B	242	Mitochondrial division protein 1; tetratricopeptid	82.75
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.87
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.31
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.13
2pnv_A	43	Small conductance calcium-activated potassium chan	81.01
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	81.0
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	80.66
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	80.07

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=100.00  E-value=1.1e-35  Score=268.57  Aligned_cols=154  Identities=19%  Similarity=0.282  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEI-EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~el-e~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      ++++++.+.++.+..+.+...+.++ ..|++.+.+|..|..+|++++..|+.+++.|+.++..|+++.+++++|+.. .+
T Consensus        19 ~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~-~~   97 (174)
T 2p22_A           19 TVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST-SH   97 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS-SC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            4445666666666666666667777 568999999999999999999999999999999999999999999999876 34


Q ss_pred             CCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        355 KTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI  430 (434)
Q Consensus       355 k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~  430 (434)
                      .+++|||+++++++++++|||+++|||+||+||||+|++||++|+|+||+|||+||.|||||||+|||++||+..+
T Consensus        98 ~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~Ki~~~~  173 (174)
T 2p22_A           98 VDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL  173 (174)
T ss_dssp             CCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6778999999999999999999999999999999999999999999999999999999999999999999998765

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.96  E-value=9.1e-30  Score=225.53  Aligned_cols=85  Identities=45%  Similarity=0.963  Sum_probs=83.3

Q ss_pred             eeecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020          2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPP   81 (434)
Q Consensus         2 v~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~~pP   81 (434)
                      |.|+|.+|||||+||||++||+.||+|||+||.+|.|+.++|||.+|+||||||++|++++|||++||++|+++|++|||
T Consensus        62 v~y~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epP  141 (146)
T 3obq_A           62 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP  141 (146)
T ss_dssp             EECSSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCS
T ss_pred             eeecCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy18020         82 LYSSR   86 (434)
Q Consensus        82 l~~~~   86 (434)
                      ||+|+
T Consensus       142 v~sk~  146 (146)
T 3obq_A          142 VFSRP  146 (146)
T ss_dssp             EEECC
T ss_pred             CccCC
Confidence            99985

>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*

Probab=99.95  E-value=1.4e-28  Score=186.27  Aligned_cols=63  Identities=30%  Similarity=0.437  Sum_probs=61.4

Q ss_pred             chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI  430 (434)
Q Consensus       368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~  430 (434)
                      +|++||||+++|||+|||||||+|++||++|+|++|+|||+||.|||||||+||||+||+..+
T Consensus         2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~Ki~~~~   64 (65)
T 2f6m_A            2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL   64 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999999999999999999999999999999999999999999765

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.82  E-value=2.4e-21  Score=174.36  Aligned_cols=80  Identities=28%  Similarity=0.497  Sum_probs=73.8

Q ss_pred             eeecCcc-cccceEEEecCCCCCCCCEeEEec-CCCce-----eccCCCcCCCCceeccccccccCCCCCHHHHHHHHHH
Q psy18020          2 TNLSGLV-YHIPVCIWLMDTHPDHAPICYVRP-TADMR-----INVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLAS   74 (434)
Q Consensus         2 v~~~g~~-y~iPi~iwl~~~yP~~~P~~~v~p-t~~m~-----i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~   74 (434)
                      |.|+|.+ |||||+||||++||+.||+|||+| |.+|.     |+.++|||++|+||||||++|+++.++|.++|+.|+.
T Consensus        73 v~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~  152 (162)
T 3r3q_A           73 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMS  152 (162)
T ss_dssp             CSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHH
T ss_pred             ccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHH
Confidence            5799998 999999999999999999999998 88886     4557999999999999999999989999999999999


Q ss_pred             HhCCCCC
Q psy18020         75 AFSALPP   81 (434)
Q Consensus        75 ~F~~~pP   81 (434)
                      .|++--|
T Consensus       153 lf~ep~~  159 (162)
T 3r3q_A          153 LLHEPPQ  159 (162)
T ss_dssp             TTSCCCC
T ss_pred             HhcCCCC
Confidence            9987654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.51  E-value=1.6e-15  Score=134.22  Aligned_cols=58  Identities=41%  Similarity=0.807  Sum_probs=56.8

Q ss_pred             CCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCCCCC
Q psy18020         99 GNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSS  156 (434)
Q Consensus        99 ~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~~s~  156 (434)
                      |||.||++|.|+.++|||.+|+||+|||++|.+++|+|.+|+++|+..|+++|||||+
T Consensus        88 vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk  145 (146)
T 3obq_A           88 CFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSR  145 (146)
T ss_dssp             EEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEEC
T ss_pred             EEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccC
Confidence            8999999999999999999999999999999999999999999999999999999985

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=99.46  E-value=2.1e-13  Score=106.60  Aligned_cols=74  Identities=46%  Similarity=0.680  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL  349 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I  349 (434)
                      |+++||+|+|+++++|.+.+.++|+++|++++.||..|+.+|++++.+|+.+++.|+++|..|+++.++|++.+
T Consensus         3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l   76 (78)
T 3iv1_A            3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL   76 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998765

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=98.75  E-value=1.9e-09  Score=96.82  Aligned_cols=59  Identities=25%  Similarity=0.415  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCC-CCCcc-----ccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCC
Q psy18020         92 ATNPTYNGNIRP-TADMR-----INVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPP  152 (434)
Q Consensus        92 ~~~p~~~~~~~p-t~~m~-----~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp  152 (434)
                      +.+|.  ||+.| |.+|.     |+.++|||.+|+|++|||++|+++.|+|.+||+.|+..|+++.|
T Consensus        95 ~~PP~--v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A           95 VKPPF--ISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             TSCCE--EEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred             CCCCE--EEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence            44454  78877 88886     55689999999999999999999999999999999999998765

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=97.85  E-value=2.5e-05  Score=69.61  Aligned_cols=62  Identities=18%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +.+.|++|++||+.||.|.... .    +-+++||.+|+|++..|..   |++ ..+|..++..+...|.+
T Consensus        58 f~~~i~fp~~YP~~PP~v~f~t-~----i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~  122 (157)
T 2gjd_A           58 YPITVEYPNEYPSKPPKVKFPA-G----FYHPNVYPSGTICLSILNEDQDWRP-AITLKQIVLGVQDLLDS  122 (157)
T ss_dssp             EEEEEECCTTTTTSCCEEECCT-T----CCCTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             EEEEEEcCCCCCCCCCeeeccC-C----CccCCCCCCCcEeeecccCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            5689999999999999997753 1    2357899999999999987   987 78999999999998854

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=97.84  E-value=2.2e-05  Score=70.27  Aligned_cols=67  Identities=16%  Similarity=0.393  Sum_probs=54.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  .+.|++|++||+.||.|... |.    +-+++||.+|+|++..|..   |++ ..+|..++..+...|.+
T Consensus        56 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~  125 (161)
T 2grr_A           56 WEGGLF--KLRMLFKDDYPSSPPKCKFE-PP----LFHPNVYPSGTVCLSILEEDKDWRP-AITIKQILLGIQELLNE  125 (161)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEES-SC----CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCEE--EEEEEcCcccCCCCCEEEEe-cC----cccCCCCCCCeEeehhcCCCCCcCC-CCcHHHHHHHHHHHHhC
Confidence            445544  57999999999999999775 21    2357899999999999985   987 78999999999988864

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=97.83  E-value=3.7e-05  Score=68.09  Aligned_cols=62  Identities=15%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +.+.|++|++||+.||.|... |.    .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus        53 f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (152)
T 2aak_A           53 FKLSLQFSEDYPNKPPTVRFV-SR----MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD  115 (152)
T ss_dssp             EEEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCCCCCEEEEe-cC----cccCCCCCCCEEechhhcCCCCC-CCcHHHHHHHHHHHHhC
Confidence            567999999999999999774 21    235789999999999998 5987 78899999999998864

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=97.80  E-value=8.6e-05  Score=58.01  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy18020        280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKT  356 (434)
Q Consensus       280 al~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~  356 (434)
                      +|...+.++|+..+.      |.+.+.|+||..    |+++..+|..++.+|+..|.+|+++.++++++|+.++.++
T Consensus         3 SllSAVeDKLRrrl~------E~~~q~qaEl~s----LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~   69 (78)
T 3iv1_A            3 SLISAVSDKLRWRMK------EEMDRAQAELNA----LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD   69 (78)
T ss_dssp             CHHHHHHHHHHHHHH------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH------HHHHHHhHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677888866655      678899999999    9999999999999999999999999999999999997543

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=97.74  E-value=5.2e-05  Score=66.95  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|.... .    .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus        48 yegg~--f~~~i~fp~~YP~~PP~v~f~t-~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (150)
T 1z2u_A           48 YQGGV--FFLTIHFPTDYPFKPPKVAFTT-R----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD  115 (150)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEESS-C----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             cCCCE--EEEEEECCCCCCCCCcEEEEec-C----cccCcCCCCCeEeeccccCCCCC-CCCHHHHHHHHHHHhhC
Confidence            44544  4468999999999999987642 1    235789999999999997 7987 68999999999888854

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=97.73  E-value=4.7e-05  Score=68.41  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|...-.     .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus        63 Yegg~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPnV~~~G~ICl~iL~~~W~P-~~ti~~vL~si~~ll~~  130 (165)
T 2c4o_A           63 YQGGV--FFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD  130 (165)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCce--EEEEEECCCcCCCCCCEEEEecC-----CcCCcCCCCCeEeehhhcCCCCC-cCcHHHHHHHHHHHHhC
Confidence            44444  45689999999999999876421     235789999999999997 7987 68999999999888854

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=97.68  E-value=6.6e-05  Score=66.68  Aligned_cols=63  Identities=21%  Similarity=0.398  Sum_probs=52.0

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      .+.+.|.+|++||+.||.|... |.    .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus        53 ~f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  116 (155)
T 1jat_A           53 IFELELYLPDDYPMEAPKVRFL-TK----IYHPNIDRLGRICLDVLKTNWSP-ALQIRTVLLSIQALLAS  116 (155)
T ss_dssp             EEEEEEECCTTTTTSCCEEEEC-SC----CCBTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEEcCCCCCCCCCcceee-cc----cccCCCCCCCEEEchhhccCCCC-CCCHHHHHHHHHHHHhC
Confidence            3568899999999999999653 21    335789999999999996 7987 78999999998888865

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=97.67  E-value=7.3e-05  Score=66.46  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=53.6

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|... |.    .=+++||.+|+|++..|.+ |++ ..++..++..+...|.+
T Consensus        53 yegg~--f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~  120 (156)
T 2e2c_A           53 YESLK--YKLTLEFPSDYPYKPPVVKFT-TP----CWHPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE  120 (156)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred             cCCcE--EEEEEECCCCCCCCCCEEEEe-CC----cccCCCccCceEECccccccCCC-CCcHHHHHHHHHHHHhC
Confidence            44544  457899999999999999774 22    1257899999999999975 987 78999999999888854

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=97.66  E-value=8.4e-05  Score=65.90  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=53.4

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|... |.    .-+++||.+|+|++..|+  +|++ ..++..++..+...|.+
T Consensus        46 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~  114 (154)
T 1c4z_D           46 YDKGAF--RIEINFPAEYPFKPPKITFK-TK----IYHPNIDEKGQVCLPVISAENWKP-ATKTDQVIQSLIALVND  114 (154)
T ss_dssp             CCSCCE--EEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTCBBCCTTTSSSSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCeE--EEEEEeCCCCCCCCCEEEEe-CC----CccccCCCCCEEECCCCCCCCCCC-CCcHHHHHHHHHHHHcC
Confidence            555554  46899999999999999774 22    234789999999999995  7987 67899999888887754

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=97.65  E-value=6.5e-05  Score=66.68  Aligned_cols=67  Identities=22%  Similarity=0.393  Sum_probs=53.8

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|...-.     .-+++||.+|+|++..| .+|++ ..+|..++..+...|.+
T Consensus        49 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  116 (154)
T 2c2v_B           49 FEGGT--FKLELFLPEEYPMAAPKVRFMTK-----IYHPNVDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA  116 (154)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTCBBCCHHHHTSCCT-TCCHHHHHHHHHHHTTS
T ss_pred             cCCCe--EEEEEEcCCCCCCCCCEEEeecC-----cccCcCccCCeEEchhccCCCCC-CCcHHHHHHHHHHHHhC
Confidence            34444  45689999999999999876421     23578999999999999 78988 88999999999988864

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=97.62  E-value=8.9e-05  Score=66.26  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|.....     .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus        48 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~  115 (160)
T 1y8x_A           48 YKSGK--FVFSFKVGQGYPHDPPKVKCETM-----VYHPNIDLEGNVCLNILREDWKP-VLTINSIIYGLQYLFLE  115 (160)
T ss_dssp             TTTBC--EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCCE--EEEEEeCCCcCCCCCCEEEEecC-----CccCcCCCCCeEEcccchhhccC-CCCHHHHHHHHHHHHhC
Confidence            44444  45689999999999999877421     23578999999999999 57987 67999999999888865

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=97.61  E-value=0.00013  Score=63.56  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHh
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F   76 (434)
                      +-+.|.+|++||+.||.|... |.  ..+-+++||.+|+|++..| ++|++ ..++..++..+...+
T Consensus        73 f~l~i~fp~~YP~~PP~v~F~-T~--i~~~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~slL  135 (136)
T 2a7l_A           73 FQLLFKFSSRYPFDSPQVMFT-GE--NIPVHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISML  135 (136)
T ss_dssp             EEEEEEECTTTTTSCCEEEEE-SS--CCCCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCCEEEEe-CC--CcCCCccCCCCCeEEchhcCCCCCC-CCcHHHHHHHHHHHh
Confidence            457888999999999998664 22  1234788999999999999 67987 678888888777654

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=97.61  E-value=9.4e-05  Score=67.42  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|.....     .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus        68 Yegg~f--~~~i~fp~~YP~~PP~v~F~t~-----i~HPNV~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~  135 (180)
T 2nvu_C           68 YKSGKF--VFSFKVGQGYPHDPPKVKCETM-----VYHPNIDLEGNVALNILREDWKP-VLTINSIIYGLQYLFLE  135 (180)
T ss_dssp             GTTBCE--EEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCCEE--EEEEeCCCcCCCCCCcCceecc-----CccCCCCCCCcEEcccccccCCC-CCCHHHHHHHHHHHHhC
Confidence            455544  4689999999999999877432     23578999999999999 56987 67999999999888864

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=97.60  E-value=0.00011  Score=66.33  Aligned_cols=67  Identities=18%  Similarity=0.333  Sum_probs=53.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|.+||+.||.|... |.    .-+++|+.+|+|++..|.+ |++ ..+|..++..+...|.+
T Consensus        48 YegG~--f~l~i~fp~~YP~~PP~v~F~-t~----i~HPNI~~~G~ICl~iL~~~WsP-~~~i~~vL~si~~ll~~  115 (169)
T 1ayz_A           48 YEDGT--FRLLLEFDEEYPNKPPHVKFL-SE----MFHPNVYANGEICLDILQNRWTP-TYDVASILTSIQSLFND  115 (169)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHTC
T ss_pred             cCCCE--EEEEEECcccCCCCCCccccc-cC----CccCCCCCCCeEeehhhccCCCC-cCcHHHHHHHHHHHHhC
Confidence            44444  456899999999999999774 22    2357899999999999974 987 77899999999888853

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=97.57  E-value=7.6e-05  Score=66.51  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|...-.     .-+++||.+|+|++..|. +|.+ ..++..++..+...|.+
T Consensus        57 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~  124 (158)
T 1zdn_A           57 YAGGL--FRMKLLLGKDFPASPPKGYFLTK-----IFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLTIKCLLIH  124 (158)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCcE--EEEEEEcCCCCCCCCCEEEeccC-----cccCCCCCCCEEehhhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            34444  45689999999999999977432     235789999999999886 8987 78999999888887754

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=97.56  E-value=0.00012  Score=65.47  Aligned_cols=67  Identities=16%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHH
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLI   69 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li   69 (434)
                      |.|..|  -+.|.+|++||+.||.|.....     +-+++||.+|+|++..|              .+|++ ..++..++
T Consensus        48 yegg~f--~~~i~fp~~YP~~PP~v~f~t~-----i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~ti~~vL  119 (164)
T 3h8k_A           48 FEFGVF--PAILSFPLDYPLSPPKMRFTCE-----MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKIL  119 (164)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCT-TCCHHHHH
T ss_pred             CCCCEE--EEEEECCCCCCCCCCEEEEcCC-----CccCCCCCCCcEeeecccCcccccccccccccCCCC-CCcHHHHH
Confidence            444444  4788899999999999866432     33577999999999999              47887 77899999


Q ss_pred             HHHHHHhCC
Q psy18020         70 KTLASAFSA   78 (434)
Q Consensus        70 ~~l~~~F~~   78 (434)
                      ..+...|.+
T Consensus       120 ~~i~~ll~~  128 (164)
T 3h8k_A          120 LSVVSMLAE  128 (164)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcC
Confidence            888887764

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=97.54  E-value=0.00016  Score=64.50  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=53.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|.....     .-+++|| .+|+|++..|.+ |++ ..++..++..+...|..
T Consensus        55 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  123 (159)
T 2bep_A           55 YEGGR--YQLEIKIPETYPFNPPKVRFITK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA  123 (159)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCE--EEEEEeCCCcCCCCCCEEEeeCC-----CCccCCCCCCCEEeChhhhccCCC-CCcHHHHHHHHHHHHhC
Confidence            44444  45899999999999999977421     2358899 499999999986 987 78999999999888864

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=97.54  E-value=0.00017  Score=61.77  Aligned_cols=63  Identities=24%  Similarity=0.368  Sum_probs=49.9

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|... |.   |.-+++||.+|+|++..| ++|++ ..++..++..+...|..
T Consensus        55 f~~~i~fp~~YP~~PP~v~f~-t~---i~~HPnv~~~G~iCl~iL~~~W~P-~~~i~~vl~si~~ll~~  118 (125)
T 2fo3_A           55 YKLKIIFPDDYPLKPPIVYFL-QK---PPKHTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLSS  118 (125)
T ss_dssp             EEEEEECCTTTTTSCCEEEEC-SS---CCCBTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC-
T ss_pred             EEEEEEcCCCCCCCCCEEEEe-CC---CCCCCcCCCCCEEEchhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            457888999999999998663 21   234578999999999999 67987 78899998888877653

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=97.53  E-value=0.00019  Score=62.41  Aligned_cols=63  Identities=25%  Similarity=0.367  Sum_probs=50.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|... |.   |.-+++||.+|+|++..|. +|++ ..++..++..+...|..
T Consensus        69 f~~~i~fp~~YP~~PP~v~f~-t~---i~~HPnv~~~G~ICl~iL~~~WsP-~~ti~~vL~si~sll~~  132 (136)
T 2h2y_A           69 YKIKIIFPDNYPLKPPIVYFL-QK---PPKHTHVYSNGDICLSVLGDDYNP-SLSISGLILSIISMLSS  132 (136)
T ss_dssp             EEEEEECCTTTTTSCCEEEEC-SS---CCCCTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHSS
T ss_pred             EEEEEEeCCCCCCCCCEEEEe-CC---CCCCCcCCCCCEEECccccCCCCC-CCcHHHHHHHHHHHHhC
Confidence            457889999999999998663 21   2345789999999999996 7887 78999998888877753

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=97.52  E-value=0.00015  Score=64.39  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=52.1

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +.+.|.+|++||+.||.|.....     .-+++||.+|+|++..|  .+|++ ..+|..++..+...|.+
T Consensus        53 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnV~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~  116 (155)
T 1wzv_A           53 FNLRISFPPEYPFKPPMIKFTTK-----IYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR  116 (155)
T ss_dssp             EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCCCCCcceeeCC-----CccCcCCCCCeEeecCCCccCCCC-CCcHHHHHHHHHHHHhC
Confidence            56889999999999999977432     23578999999999999  78987 77999999999988864

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=97.47  E-value=0.0002  Score=63.15  Aligned_cols=62  Identities=18%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-.     .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus        50 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  112 (149)
T 2r0j_A           50 YKLELFLPEQYPMEPPKVRFLTK-----IYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSS  112 (149)
T ss_dssp             EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHHHS
T ss_pred             EEEEEeCCcccCCCCCeeEeccC-----CccCCCCCCCEEechhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            45788999999999999866422     235789999999999997 8987 78999999998887754

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=97.47  E-value=0.0002  Score=63.33  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.++++||+.||.|... |.    .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus        53 f~~~i~fp~~YP~~pP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  115 (151)
T 4gpr_A           53 FFLDVHFPVDYPFKAPRVTFM-TK----VYHPNINKNGVICLDILKDQWSP-ALTLSRVLLSISSLLTD  115 (151)
T ss_dssp             EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCCCCCcceeEEe-cC----cccceECCCCEEEcccccCCCCC-CCcHHHHHHHHHHHhcC
Confidence            457888999999999998663 22    23578999999999999 78987 68899999999888764

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=97.43  E-value=0.00025  Score=63.67  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-------cccCCCCCHHHHHHHHHHHh
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-------TWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-------~W~~~~s~L~~li~~l~~~F   76 (434)
                      |.|..|  -+.|.+|++||+.||.|.....     .-+++||.+|+|++..|.       +|++ ..++..++..+...|
T Consensus        58 yegg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~~~~~~~W~p-~~~i~~vl~~i~~ll  129 (167)
T 3fn1_B           58 YQGGKF--QFETEVPDAYNMVPPKVKCLTK-----IWHPNITETGEICLSLLREHSIDGTGWAP-TRTLKDVVWGLNSLF  129 (167)
T ss_dssp             TTTCCE--EEEEECCTTBTTBCCEEEECSC-----CCCSSBCTTCCBCCGGGSBCSSSTTSBCT-TCCHHHHHHHHHHTT
T ss_pred             cCCCEE--EEEEECCCCCCCCCCeeEecCC-----cccCCCCCCCEEechhhccCCCCCCCCCC-cCcHHHHHHHHHHHH
Confidence            445444  4788899999999999866322     236789999999999998       4876 789999999988877


Q ss_pred             CC
Q psy18020         77 SA   78 (434)
Q Consensus        77 ~~   78 (434)
                      .+
T Consensus       130 ~~  131 (167)
T 3fn1_B          130 TD  131 (167)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=97.40  E-value=0.0002  Score=63.05  Aligned_cols=62  Identities=23%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|... |.    .=+++||. +|+|++..|. +|++ ..++..++..+...|.+
T Consensus        51 f~~~i~fp~~YP~~PP~v~f~-t~----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~  114 (149)
T 1fxt_A           51 FVVDIEVPMEYPFKPPKMQFD-TK----VYHPNISSVTGAICLDILKNAWSP-VITLKSALISLQALLQS  114 (149)
T ss_dssp             EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCSSSCCBCCHHHHTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCCCCCEEEEe-CC----CccCCCcCCCCeEeCCcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence            458999999999999999774 21    23578998 9999999996 5987 78999999999888855

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=97.37  E-value=0.0003  Score=63.97  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=50.4

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-.     .=+++||.+|+|++..|. +|.+ ..+|..++..+...|.+
T Consensus        79 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~  141 (179)
T 1i7k_A           79 YKLSLEFPSGYPYNAPTVKFLTP-----CYHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE  141 (179)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCcCCCCCceEEEecC-----CccCccccCCeEEcccCcCcCCC-CCCHHHHHHHHHHHHhC
Confidence            55788999999999999876432     235789999999999997 4987 78899999888887753

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=97.37  E-value=0.00023  Score=63.40  Aligned_cols=67  Identities=19%  Similarity=0.357  Sum_probs=53.3

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCce---eccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKI---YSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~---~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.+|++||+.||.|...-.     .-.++||.+|+|   ++..|.+|++ ..++..++..+...|.+
T Consensus        69 YegG~--f~l~i~fp~~YP~~PP~v~F~t~-----i~HPNV~~~G~icisCL~iL~~WsP-~~ti~~vL~sI~~ll~~  138 (156)
T 2q0v_A           69 FENRI--YSLTIFCDDNYPDSPPTVKFDTK-----IEMSCVDNCGRVIKNNLHILKNWNR-NYTIETILISLRQEMLS  138 (156)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTSBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHTTS
T ss_pred             cCCcE--EEEEEECCCcCCCCCCeEEEEcc-----cccCCCccCCeEehhhcccccCCCC-cCcHHHHHHHHHHHHhC
Confidence            44444  45788999999999999866422     235789999999   8888999988 78999999998888764

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=97.34  E-value=0.00035  Score=62.57  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHHHHHHHHh
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li~~l~~~F   76 (434)
                      +-+.|.+|++||+.||.|.....     .-+++||.+|+|++..|              .+|++ ..++..++..+...|
T Consensus        54 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~~i~~vL~si~~ll  127 (165)
T 2ucz_A           54 FNAKLEFPKDYPLSPPKLTFTPS-----ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKILLSVMSML  127 (165)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCT-TCCHHHHHHHHHHHH
T ss_pred             EEEEEECCccCCCCCCEEEEeCC-----CccCCCCCCCcEeehhhCCccccccccCCCCCCCCC-cCcHHHHHHHHHHHH
Confidence            45788999999999999976432     23577999999999999              57887 678999998888877


Q ss_pred             CC
Q psy18020         77 SA   78 (434)
Q Consensus        77 ~~   78 (434)
                      .+
T Consensus       128 ~~  129 (165)
T 2ucz_A          128 SE  129 (165)
T ss_dssp             HS
T ss_pred             hC
Confidence            54

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=97.33  E-value=0.00039  Score=62.25  Aligned_cols=67  Identities=16%  Similarity=0.394  Sum_probs=53.3

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|.  +.|.++++||+.||.|... |.    +-+++||.+|+|++..|..   |++ ..++..++..+...|.+
T Consensus        59 yegg~f~--l~i~fp~~YP~~pP~v~F~-t~----i~HPnV~~~G~iCl~iL~~~~~W~p-~~ti~~vL~~i~~ll~~  128 (163)
T 3rcz_B           59 WEGGLYK--LTMAFPEEYPTRPPKCRFT-PP----LFHPNVYPSGTVCLSILNEEEGWKP-AITIKQILLGIQDLLDD  128 (163)
T ss_dssp             TTTCEEE--EEEECCTTTTTSCCEEEES-SC----CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             cCCCEEE--EEEECCCCCCCCCCEEEEe-CC----CccCCCCCCCcEeccccCCCCCcCC-cCcHHHHHHHHHHHHhC
Confidence            4444444  7888999999999998764 21    3457899999999999975   987 68999999999988843

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=97.25  E-value=0.00046  Score=63.22  Aligned_cols=66  Identities=15%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc----ccccCCCCCHHHHHHHHHHHhCCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL----HTWTPQNSKLEGLIKTLASAFSAL   79 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL----~~W~~~~s~L~~li~~l~~~F~~~   79 (434)
                      |.|..  +-+.|.+|++||+.||.|... |.      +.+++.+|+|++..|    ++|.+ ..++..++..+...|.+.
T Consensus        58 YegG~--f~l~i~fP~~YP~~PP~v~f~-T~------~~~~~~~G~ICL~iL~~~~~~W~P-~~ti~~vL~si~sll~~p  127 (187)
T 2f4w_A           58 YEGGY--YHGKLIFPREFPFKPPSIYMI-TP------NGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVEK  127 (187)
T ss_dssp             TTTCE--EEEEEECCTTTTSSCCEEEEC-SC------CSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHSC
T ss_pred             CCCCE--EEEEEEcCCCCCCCCCccccc-CC------CceeccCCeEeeeccccCccCCCC-cCcHHHHHHHHHHHhcCC
Confidence            44444  457888999999999998663 32      567889999999999    68987 789999988888877553

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=97.23  E-value=0.00048  Score=61.85  Aligned_cols=62  Identities=18%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|... |.    .-.++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus        70 f~l~i~fp~~YP~~PP~V~F~-T~----i~HPNI~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~  132 (166)
T 2ayv_A           70 FFLNIHFPSDYPFKPPKVNFT-TK----IYHPNINSQGAICLDILKDQWSP-ALTISKVLLSISSLLTD  132 (166)
T ss_dssp             EEEEEECCTTTTSSCCEEEEC-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEeCCCcCCCCCceeeec-cC----CcCCcCCCCCeEEcccccccCCC-CCcHHHHHHHHHHHHhC
Confidence            557899999999999998663 21    124789999999999997 7987 68999999998888754

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=97.23  E-value=0.00048  Score=63.24  Aligned_cols=67  Identities=18%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|-+|++||+.||.|... |.    .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus        77 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnV~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~  144 (190)
T 3o2u_A           77 YNYGSI--NFNLDFNEVYPIEPPKVVCL-KK----IFHPNIDLKGNVCLNILREDWSP-ALDLQSIITGLLFLFLE  144 (190)
T ss_dssp             TTTCCE--EEEEECCTTTTTSCCEEEEC-SC----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCCEE--EEEEECCCCCCCCCceeEEe-cC----cccCCCCCCCeEechhccCCCCC-CCCHHHHHHHHHHHHhC
Confidence            444444  47788899999999998764 21    23578999999999988 67877 88999999888887754

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=97.22  E-value=0.00067  Score=61.26  Aligned_cols=62  Identities=19%  Similarity=0.311  Sum_probs=50.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--------------cccCCCCCHHHHHHHHHHHh
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--------------TWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--------------~W~~~~s~L~~li~~l~~~F   76 (434)
                      +-+.|.+|++||+.||.|.....     .-+++||.+|+|++-.|.              +|++ ..+|..++..+...|
T Consensus        67 f~~~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP-~~ti~~vL~sI~sll  140 (172)
T 2awf_A           67 FKAHLTFPKDYPLRPPKMKFITE-----IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISML  140 (172)
T ss_dssp             EEEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHH
T ss_pred             EEEEEECCcccCCCCCcccccCC-----CccCCCCCCCcEehhhcCCcccccccccccCCCCCC-cCcHHHHHHHHHHHH
Confidence            45788999999999999866422     135789999999999985              6887 678999999998888


Q ss_pred             CC
Q psy18020         77 SA   78 (434)
Q Consensus        77 ~~   78 (434)
                      .+
T Consensus       141 ~~  142 (172)
T 2awf_A          141 AD  142 (172)
T ss_dssp             SC
T ss_pred             HC
Confidence            65

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=97.22  E-value=0.00054  Score=61.64  Aligned_cols=62  Identities=16%  Similarity=0.324  Sum_probs=50.2

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-----cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-----TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-----~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...- .    .-+++||.+|+|++..|.     +|++ ..+|..++..+...|.+
T Consensus        53 f~~~i~fp~~YP~~PP~v~f~t-~----i~HPNv~~~G~iCl~iL~~~~~~~W~p-~~~i~~vL~si~~ll~~  119 (169)
T 1yh2_A           53 FKLEVIIPERYPFEPPQIRFLT-P----IYHPNIDSAGRICLDVLKLPPKGAWRP-SLNIATVLTSIQLLMSE  119 (169)
T ss_dssp             EEEEEECCTTTTSSCCEEEESS-C----CCBTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHHHHHHHHHHHS
T ss_pred             EEEEEEeCCCCCCCCcEEEeec-C----CccccCCcCCeEecccccCCcccCCCC-CCcHHHHHHHHHHHHhC
Confidence            4578889999999999987642 2    235789999999999985     8987 67899999888887754

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=97.21  E-value=0.00059  Score=62.20  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=51.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHH
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLI   69 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li   69 (434)
                      |.|..|  -+.|-+|++||+.||.|.....     .=+++|+.+|+|++-.|              .+|++ ..++..++
T Consensus        52 yegg~f--~~~i~fp~~YP~~PP~v~f~t~-----i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p-~~~i~~vL  123 (183)
T 3rz3_A           52 YEGGYF--KARLKFPIDYPYSPPAFRFLTK-----MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNP-TQNVRTIL  123 (183)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEESSC-----CCCTTBCTTSBBCCTTC--------------CCCCT-TCCHHHHH
T ss_pred             CCCCeE--EEEEECCCCCCCCCCeeEecCC-----CccCCCCCCCcEehhhcCcccccccccccccCCCCC-cCcHHHHH
Confidence            444444  4788899999999999876422     23577999999999999              56987 77799988


Q ss_pred             HHHHHHhCC
Q psy18020         70 KTLASAFSA   78 (434)
Q Consensus        70 ~~l~~~F~~   78 (434)
                      ..+...|.+
T Consensus       124 ~si~~ll~~  132 (183)
T 3rz3_A          124 LSVISLLNE  132 (183)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhC
Confidence            888887743

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=97.15  E-value=0.00081  Score=60.64  Aligned_cols=67  Identities=10%  Similarity=0.174  Sum_probs=52.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc---ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL---HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL---~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.++++||+.||.|...-.     .-+++|| .+|+|++..|   .+|++ ..++..++..+...|..
T Consensus        83 YegG~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~vL~sI~~ll~~  153 (170)
T 2hlw_A           83 YENRI--YSLKIECGPKYPEAPPFVRFVTK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVVLQELRRLMMS  153 (170)
T ss_dssp             TSSCC--BCEEEECCSSCTTSCCEEEECBC-----CCCSSBCSSSCBBCTTTCHHHHTCCS-SCCHHHHHHHHHHHHHS
T ss_pred             cCCcE--EEEEEECCCCCCCCCCeeEEecc-----cccCCEeCCCCEEEhhhcCCCCCCCc-cCcHHHHHHHHHHHHcc
Confidence            44444  45788999999999999866421     1347898 7999998877   68987 78999999988888854

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=97.14  E-value=0.00088  Score=59.81  Aligned_cols=67  Identities=10%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc---ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL---HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL---~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|-++++||+.||.|...-.     .-.++|| .+|+|++.+|   .+|++ ..++..++..+...|..
T Consensus        73 YegG~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~vL~sI~~ll~~  143 (160)
T 2a4d_A           73 YENRI--YSLKIECGPKYPEAPPFVRFVTK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVVLQELRRLMMS  143 (160)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             ccCeE--EEEEEECCCcCCCCCcEEEEecC-----ceeCCEECCCCEEehhhcCCccCCCc-cCcHHHHHHHHHHHHcc
Confidence            44444  45788999999999999866421     1347898 6999998877   58987 78999999999988854

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=97.13  E-value=0.00085  Score=61.77  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|... |.    .-+++||.+|+|++..|. +|.+ ..+|..++..+...|..
T Consensus        97 f~l~i~fp~~YP~~PP~V~F~-T~----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~~ll~~  159 (194)
T 3bzh_A           97 FFLDITFTPEYPFKPPKVTFR-TR----IYHCNINSQGVICLDILKDNWSP-ALTISKVLLSICSLLTD  159 (194)
T ss_dssp             EEEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCcCCCCCcccccc-CC----CccceECCCCceechhhhccCCC-cCcHHHHHHHHHHHHhC
Confidence            567888999999999998774 21    235889999999999997 6887 78999999888887754

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=97.08  E-value=0.00069  Score=58.87  Aligned_cols=67  Identities=18%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCC-Cce--eccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHT-GKI--YSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~-G~~--~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|-++++||+.||.|...-.     .-+++||.+ |+|  ++..|.+|++ ..++..++..+...|.+
T Consensus        54 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~~G~i~~cL~~l~~W~p-~~~i~~vl~~i~~ll~~  123 (138)
T 1jat_B           54 HENRI--YSLSIDCGPNYPDSPPKVTFISK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLLLDLRKEMAT  123 (138)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             ccceE--EEEEEECCCCCCCCCCceEEEcc-----cccCCEeCCCCEEeeecccCCCCCC-cCcHHHHHHHHHHHHcC
Confidence            44444  45788899999999999866321     235789997 999  7777889988 78999999998888754

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=97.05  E-value=0.00094  Score=62.45  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|.....     .=+++||. +|+|++..|. +|++ ..++..++..+...|..
T Consensus        52 f~l~i~fP~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~  115 (215)
T 1tte_A           52 FVVDIEVPMEYPFKPPKMQFDTK-----VYHPNISSVTGAICLDILRNAWSP-VITLKSALISLQALLQS  115 (215)
T ss_dssp             CEEEEECCSCSSSCCCEEEETTT-----CCCSSSCSSSSCCCSSTTTCCSCT-TCCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCccCCCCCCcccccCC-----CccCcCcCCCCEEECccCCCCCCC-cCcHHHHHHHHHHHHhC
Confidence            56788999999999999876321     23578999 9999999997 5887 78999999999888865

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=97.03  E-value=0.0009  Score=60.39  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=51.1

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-+    -.-+++|| .+|+|++..|+  +|++ ..+|..++..+...|.+
T Consensus        67 f~~~i~fp~~YP~~PP~v~f~t~----~i~HPni~~~~G~iCl~iL~~~~W~p-~~~i~~vL~si~~ll~~  132 (172)
T 2y9m_A           67 FRILIEVPSSYPMNPPKISFMQN----NILHCNVKSATGEICLNILKPEEWTP-VWDLLHCVHAVWRLLRE  132 (172)
T ss_dssp             EEEEEECCTTTTTSCCEEEECTT----SCCCTTEETTTTEECCGGGSTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCcCCCCCCEEEEeeC----CeecCCCcCCCCEEeccccCCCCCCC-cCcHHHHHHHHHHHHhC
Confidence            45788999999999999977532    12357896 79999999996  8987 77899999888887754

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=97.02  E-value=0.00078  Score=60.66  Aligned_cols=62  Identities=21%  Similarity=0.344  Sum_probs=51.4

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCc-CCCCceeccccc---cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNV-DHTGKIYSPYLH---TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~v-d~~G~~~~pyL~---~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...- .    .-+++| +.+|+|++..|.   +|++ ..+|..++..+...|.+
T Consensus        72 f~l~i~fp~~YP~~PP~V~F~T-~----i~HPNI~~~~G~ICL~iL~~~~~WsP-~~ti~~vL~sI~sll~~  137 (169)
T 1yrv_A           72 FQLTIHFTSEYNYAPPVVKFIT-I----PFHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN  137 (169)
T ss_dssp             EEEEEECCTTBTTBCCEEEESS-C----CCCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred             EEEEEECCccCCCCCCcceecC-C----CccCcccCCCCeEeehhhcCCcCCCC-cCCHHHHHHHHHHHHhC
Confidence            4578999999999999987642 1    235788 799999999996   8987 78999999999988864

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=97.01  E-value=0.0006  Score=62.39  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCC-CcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCCC
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQ-NVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSAL   79 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~-~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~~   79 (434)
                      .+-+.|-+|++||+.||.|.+.. +    +-++ +||.+|+|++..|.  +|++ ..++..++..+...|.+-
T Consensus        90 ~f~l~i~fp~~YP~~PP~V~f~t-p----i~hPnnV~~~G~ICL~iL~~~~WsP-~~ti~~VL~sI~slL~~p  156 (186)
T 1zuo_A           90 YILLNFSFKDNFPFDPPFVRVVL-P----VLSGGYVLGGGALCMELLTKQGWSS-AYSIESVIMQINATLVKG  156 (186)
T ss_dssp             SEEEEEECCTTTTSSCCEEEEEE-S----CEESTTBCGGGBBCCGGGSTTTCCT-TSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCCCCeEEEeC-C----ccCCCccCCCCcEEeccCCCCCCCC-cCcHHHHHHHHHHHHcCC
Confidence            36789999999999999986532 1    1134 79999999999996  7987 789999998888877653

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=96.98  E-value=0.0016  Score=64.33  Aligned_cols=72  Identities=18%  Similarity=0.396  Sum_probs=55.6

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--------cccCCCCCHHHHHHHHHHHhCCCCCc
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--------TWTPQNSKLEGLIKTLASAFSALPPL   82 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--------~W~~~~s~L~~li~~l~~~F~~~pPl   82 (434)
                      +-+.|.+|.+||+.||.|...-..+-.++=+++||.+|+|++..|.        +|++.-++|..++..++..|...=|-
T Consensus       129 F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn  208 (323)
T 3ceg_A          129 FEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPY  208 (323)
T ss_dssp             EEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGG
T ss_pred             EEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCC
Confidence            4578889999999999987754333344557889999999999996        68774458999999999888643343

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=96.86  E-value=0.002  Score=59.50  Aligned_cols=67  Identities=24%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|... |.    .=+++||. +|+|++..| .+|.+ ..++..++..+...|..
T Consensus        52 yegg~f--~~~i~fp~~YP~~pP~v~f~-t~----i~HPnv~~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~  120 (201)
T 3k9o_A           52 YEGGRY--QLEIKIPETYPFNPPKVRFI-TK----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA  120 (201)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCCEE--EEEEECCCcCCCCCCccccc-cC----cccCCCcCCCCeeeCcccccCCCC-CCCHHHHHHHHHHHhcC
Confidence            444444  57888999999999998764 21    23578994 999999999 67877 78999999888887754

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=96.86  E-value=0.0021  Score=57.61  Aligned_cols=62  Identities=21%  Similarity=0.336  Sum_probs=48.0

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHH-HHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEG-LIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~-li~~l~~~F~~   78 (434)
                      +-+.|.++++||+.||.|.....     .-+++||.+|+|++-.| .+|++ ..++.. ++..+...|..
T Consensus        71 f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vll~~l~~l~~~  134 (167)
T 4ds2_A           71 YQLSVLFSDDYPHEPPTVRFVTP-----VYSPLVTGEGGICDRMVNDFWTP-DQHASDVIKLVLDRVFSQ  134 (167)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCCSSCCTTSCCCTHHHHTTCCT-TSCHHHHHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCCCCCEEEEeCC-----cccccCCCCCEEEcccCcCCCCC-CCChHHHHHHHHHHHHhc
Confidence            45788899999999999876422     23578999999999888 67887 677776 45667777765

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=96.80  E-value=0.0025  Score=58.63  Aligned_cols=62  Identities=16%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-.     .-+++|| .+|+|++..|.+ |.+ ..+|..++..+...|..
T Consensus        94 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~  157 (193)
T 2f4z_A           94 FTLDIVIPPDYPYNPPKMKFVTK-----IWHPNISSQTGAICLDILKHEWSP-ALTIRTALLSIQAMLAD  157 (193)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCcCCCCCCeEEEecC-----CccCCCcCCCCEEECccccccCCC-CCCHHHHHHHHHHHHhC
Confidence            56788999999999999876422     2357898 599999999986 987 78899999888887754

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=96.54  E-value=0.0041  Score=63.32  Aligned_cols=67  Identities=18%  Similarity=0.335  Sum_probs=52.6

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|.  +.|.+|++||+.||.|.....     .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus        47 yegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vL~~i~~ll~~  114 (399)
T 4ddg_A           47 YQGGVFF--LTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSISLDILRSQWSP-ALTISKVLLSICSLLCD  114 (399)
T ss_dssp             STTCEEE--EEEECCSSTTTSCCEEEESSC-----CCCTTBCTTCBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred             CCCCEEE--EEEECCcccCCCCcEEEeecc-----ccccccCCCCeEeCcccccCCCc-cccHHHHHHHHHHHHcC
Confidence            4555554  788899999999999866421     23578999999999999 57877 78899998888887764

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=96.47  E-value=0.0016  Score=59.15  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceecccc-ccccCCCCCHHHHHHH-HHHHhC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYL-HTWTPQNSKLEGLIKT-LASAFS   77 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL-~~W~~~~s~L~~li~~-l~~~F~   77 (434)
                      +-+.|.+|++||+.||.|...-.     .-+++||. +|+|++..| .+|++ ..++..++.. +...|.
T Consensus        70 f~l~i~fp~~YP~~PP~V~F~t~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~iL~s~I~~Ll~  133 (179)
T 2z5d_A           70 WKVRVDLPDKYPFKSPSIGFMNK-----IFHPNIDEASGTVCLDVINQTWTA-LYDLTNIFESFLPQLLA  133 (179)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTTHHHHTHHHHHHH
T ss_pred             EEEEeeCCCCCCCCCceEEEecC-----CccCcCCCCCCeEeccccccCCCC-CCCHHHHHHHHHHHHHh
Confidence            45788999999999999876421     23578999 999999988 67987 6788887777 666654

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=96.46  E-value=0.0018  Score=58.43  Aligned_cols=61  Identities=21%  Similarity=0.337  Sum_probs=46.4

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc-cccCCCCCHHHHHHHH-HHHhC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH-TWTPQNSKLEGLIKTL-ASAFS   77 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~-~W~~~~s~L~~li~~l-~~~F~   77 (434)
                      +-+.|.++++||+.||.|... |.    .-+++|| .+|+|++..|. +|++ ..++..++..+ ...+.
T Consensus        57 f~~~i~fp~~YP~~PP~v~F~-t~----i~HPNi~~~~G~iCl~iL~~~W~p-~~~i~~vL~sil~~ll~  120 (171)
T 1yf9_A           57 WMLHVQLPSDYPFKSPSIGFC-NR----ILHPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR  120 (171)
T ss_dssp             EEEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred             EEEEEEcCCCCCCCCCeEEee-cC----cccccCcccCCeEeccccccCCCC-CCcHHHHHHHHHHHHHh
Confidence            457888999999999998764 21    2357899 59999999996 7987 67788877665 34443

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=96.42  E-value=0.0035  Score=58.62  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=50.3

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-.     .=+++|| .+|+|++..|.+ |++ ..+|..++..+...|..
T Consensus        72 f~l~i~fP~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~  135 (216)
T 2pwq_A           72 FTLAITIPNDYPYNPPKIKFVTK-----IWHPNISSQTGAICLDVLKNEWSP-ALTIRTALLSIQALLSD  135 (216)
T ss_dssp             EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCHHHHHHCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCcCCCCCCcccccCC-----CcCCCCcCCCCEEEchhhcccCCC-CCcHHHHHHHHHHHHhC
Confidence            46788999999999999866422     2357898 589999999975 987 78999999988888764

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=96.33  E-value=0.007  Score=57.86  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|...-.     .=+++|| .+|+|++..| .+|.+ ..++..++..+...|..
T Consensus       109 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~~ll~~  172 (253)
T 3e46_A          109 YQLEIKIPETYPFNPPKVRFITK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA  172 (253)
T ss_dssp             EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTCCCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCCCCCeeeecCC-----CccCCccCCCCeeecccccCCCCC-CCCHHHHHHHHHHHhcC
Confidence            45788899999999999866421     2347899 4999999999 67877 78999999888887754

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C

Probab=96.28  E-value=0.082  Score=48.36  Aligned_cols=121  Identities=10%  Similarity=0.040  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHH
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIL  375 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~  375 (434)
                      .+.+++.+...-++|...+..|+..+..++..-..++........+..+++..|..     ....|.       ++..|-
T Consensus        67 ~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~-----~~sp~~-------L~~~L~  134 (192)
T 2p22_C           67 FAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSK-----KYGDIA-------LKKKLE  134 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSSHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCHHH-------HHHHHH
Confidence            34444444333333333333333333333333333333333333344444333321     234444       888888


Q ss_pred             HhhHHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        376 NTFTEEAATEDTIYYMGEALRRG--VIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS  431 (434)
Q Consensus       376 ~l~Aed~AieDtiy~L~~aL~~g--~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~  431 (434)
                      ..++|-.+-.|.|   .+-|..|  .|+++.||++.|..-+.--+.|.-..+...+..
T Consensus       135 ~a~~e~eeeS~~l---~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e~~~  189 (192)
T 2p22_C          135 QNTKKLDEESSQL---ETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDKQGN  189 (192)
T ss_dssp             HHHHHHHHHHHHH---HHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHH---HHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888766666554   4566666  799999999999887766666666665554433

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=96.23  E-value=0.0036  Score=55.22  Aligned_cols=61  Identities=25%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc-cccCCCCCHHHHHHH-HHHHhC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH-TWTPQNSKLEGLIKT-LASAFS   77 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~-~W~~~~s~L~~li~~-l~~~F~   77 (434)
                      +-+.|.+|++||+.||.|...-.     .-+++|| .+|+|++..|. +|++ ..++..++.. +...|.
T Consensus        48 f~~~i~fp~~YP~~pP~v~f~t~-----i~HPni~~~~G~iCl~il~~~W~p-~~~i~~vl~~ii~~Ll~  111 (152)
T 2onu_A           48 WKVHVTLPDDYPFASPSIGFMNK-----LLHPNVDEASGSVCLDVINQTWTP-LYSLVNVFEVFLPQLLT  111 (152)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTTCBBCHHHHHHHCCT-TCCHHHHHHTHHHHHHH
T ss_pred             EEEEEcCcccCCCCCCeEEEecC-----CccCcCcCcCCeEecccccccCCC-CCCHHHHHHHHHHHHHh
Confidence            45788999999999999966421     2357899 49999999996 4987 6788887765 445554

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=95.04  E-value=0.089  Score=47.28  Aligned_cols=74  Identities=9%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        280 AVEDKIRRKMNEQKVQAQ-EEIEILKQTENEL----NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT  353 (434)
Q Consensus       280 al~dkL~~~L~e~~~q~~-~ele~L~~~q~EL----~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~  353 (434)
                      .+.++|+.-+++...+.. ..++.+...|++|    ++.++.|+.+..+|+.++..|+++.+.|+++++.+++++.++.
T Consensus        12 ~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~   90 (174)
T 2p22_A           12 EMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ   90 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456666666555443 5566777666655    8888889999999999999999999999999999999665553

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.31  E-value=0.45  Score=37.26  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAV  351 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~  351 (434)
                      |....++++..++.|+.....|+++....++.|..
T Consensus        39 L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A           39 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444445555555555444444444443

>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A

Probab=93.76  E-value=0.02  Score=61.94  Aligned_cols=110  Identities=22%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-+++++++....+.      +..++.||...+++  +..+....+.....|.+.++++.++++.|.++++
T Consensus       383 ~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~i~~l~~~p~~~DA~~l~~A~kg~gTde~~LiEIL~  462 (672)
T 1m9i_A          383 DTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILA  462 (672)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCTHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHhccCCCHHHHHHhhh
Confidence            577788888889999988888876      56788899887776  5666677899999999999999999999999999


Q ss_pred             HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      ...+.+...|.+       +|+++|....|+.-..||...+.++|
T Consensus       463 tRsn~ei~~ik~-------aY~~~y~~sLe~di~~dtsG~~~~ll  500 (672)
T 1m9i_A          463 TRTNAEIRAINE-------AYKEDYHKSLEDALSSDTSGHFRRIL  500 (672)
T ss_dssp             HSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred             cCCHHHHHHHHH-------HHHHHHCcCHHHHHHhccchHHHHHH
Confidence            987777666666       77888888888888888877777765

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.27  E-value=0.92  Score=46.94  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        283 DKIRRKMNEQKVQAQEEIEI-LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~-L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ++|++.+.+. +++..++++ ++.+.++|+.......+......+..++|++.|+.|+++++.-...|..|
T Consensus        67 NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvL  136 (562)
T 3ghg_A           67 NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL  136 (562)
T ss_dssp             HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555444 344444444 34445555555554555555555555666666666666666655555544

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=92.49  E-value=0.097  Score=46.71  Aligned_cols=58  Identities=24%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             ccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc--ccC--CCCCHHHHH
Q psy18020          8 VYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT--WTP--QNSKLEGLI   69 (434)
Q Consensus         8 ~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~--W~~--~~s~L~~li   69 (434)
                      .|.+.+.|=+|++||++||-|.. ++.+   .....|+.+|+|+|-.|..  |..  +..++..++
T Consensus        82 ~y~F~L~~~fPe~YP~~PPeV~F-~~~~---~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL  143 (172)
T 2z6o_A           82 KYEFDIEFDIPITYPTTAPEIAV-PELD---GKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  143 (172)
T ss_dssp             EEEEEEEEECCTTTTTSCCCCBC-GGGT---TTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred             ceEEEEEEECCCCCCCCCCeeee-CCCC---CCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence            58899999999999999999866 3321   2246789999999999933  652  356655554

>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A

Probab=91.99  E-value=0.031  Score=60.48  Aligned_cols=110  Identities=22%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-+++++++....+.      +..++.||...+++  +..+....+.....|.+.+++++++++.|.++++
T Consensus        40 ~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~l~~l~~~p~~~dA~~l~~A~kG~gTde~~LiEIl~  119 (672)
T 1m9i_A           40 EAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILA  119 (672)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            567778888888899888888876      56788888887777  4556677888999999999999999999999999


Q ss_pred             HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      ..++.+...|.+       +|+++|....|+.-..||...+.++|
T Consensus       120 tRsn~ei~~ik~-------aY~~~y~~sLe~di~~dtsG~f~klL  157 (672)
T 1m9i_A          120 SRTNEQMHQLVA-------AYKDAYERDLEADIIGDTSGHFQKML  157 (672)
T ss_dssp             HCCHHHHHHHHH-------HHHHHSCSCHHHHHHHHCCHHHHHHH
T ss_pred             cCCHHHHHHHHH-------HHHHHhCcchHHHHhccCCccHHHHH
Confidence            877655544444       45555555555555555544444443

>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A

Probab=91.64  E-value=0.061  Score=52.71  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|-+++++.+....+.      +..++.||...+++  +.-+....+.....|.+.+++++++++.|.++++
T Consensus        23 ~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA~~L~~AmkG~Gtde~~LieIL~  102 (308)
T 2hyv_A           23 VTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIIC  102 (308)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHTSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCHHHHHHHHh
Confidence            456677777778888888887776      45678888766666  3455567788889999999999989999999998


Q ss_pred             HhcCC
Q psy18020        351 VLTEK  355 (434)
Q Consensus       351 ~l~~k  355 (434)
                      ...+.
T Consensus       103 ~Rs~~  107 (308)
T 2hyv_A          103 SRTNQ  107 (308)
T ss_dssp             HCCHH
T ss_pred             cCCHH
Confidence            77644

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.45  E-value=3.7  Score=32.04  Aligned_cols=47  Identities=13%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET  343 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~  343 (434)
                      +.+..+|.+...++..+.+.|+++...|+.++...+..+..|-.+++
T Consensus        33 KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A           33 KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344445555556666666888888888888888887777766543

>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A

Probab=91.38  E-value=0.06  Score=53.11  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|-+++++.+....+.      ...++.||...++++  ..+....+.....|.+.++++++++..|.++++
T Consensus        39 ~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~p~~~DA~~L~~A~kG~Gtde~~lieIL~  118 (323)
T 1axn_A           39 KMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILT  118 (323)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHCSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCccHHHHHHHHhcCchHHHHHHHHHHhccCCCCHHHHhHHhc
Confidence            466778888888888888888776      456778887666652  333445677888999999999889999999998


Q ss_pred             HhcCC
Q psy18020        351 VLTEK  355 (434)
Q Consensus       351 ~l~~k  355 (434)
                      ...+.
T Consensus       119 ~Rs~~  123 (323)
T 1axn_A          119 TRTSR  123 (323)
T ss_dssp             HSCHH
T ss_pred             CCCHH
Confidence            77543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.17  E-value=2.9  Score=34.68  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +.+.+.+.......|++++..|+..+..+...|..|+.+.+.|++.-.
T Consensus        26 ~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R   73 (111)
T 2v66_B           26 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR   73 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            556666667777778999999999999999999999999998887655

>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A

Probab=90.91  E-value=0.055  Score=53.95  Aligned_cols=128  Identities=22%  Similarity=0.255  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|-+++++.+....+.      +..++.||...+++  +..+....+.....|.+.+++++++++.|.++++
T Consensus        63 ~~iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~DA~~L~~AmkG~GTde~~LieIL~  142 (346)
T 1hm6_A           63 ATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEILA  142 (346)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHHHHHHHHHhhccCCCHHHHHHHHh
Confidence            566778888888888888888776      45678888776666  4555677788899999999999999999999998


Q ss_pred             HhcCCCC------------CCcccccccc-chHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcCC-CCHHHH
Q psy18020        351 VLTEKTE------------VDVDEAVTTT-APIYKQILNTFTE-----------EAATEDTIYYMGEALRRGV-IDLEVY  405 (434)
Q Consensus       351 ~l~~k~~------------~diDe~i~~~-~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g~-I~ld~f  405 (434)
                      ...+.+-            -|+.+.|..+ +--++.++-..+.           +.|-.|+-. |.+|...|. -|-++|
T Consensus       143 ~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~~~R~e~~~vd~~~a~~DA~~-L~~A~~~~~Gtde~~l  221 (346)
T 1hm6_A          143 SRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDARA-LYEAGERRKGTDLNVF  221 (346)
T ss_dssp             HSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSCCHHHHHHHHHH-HHHHTTTSSSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhhccccccCCCCchHHHHHHHH-HHHHHhccCCCcHHHH
Confidence            7754322            1333333222 2235555555555           667777765 667775432 244545


Q ss_pred             HH
Q psy18020        406 LK  407 (434)
Q Consensus       406 lK  407 (434)
                      +.
T Consensus       222 i~  223 (346)
T 1hm6_A          222 IT  223 (346)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A

Probab=90.87  E-value=0.072  Score=52.50  Aligned_cols=129  Identities=18%  Similarity=0.185  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|-+++++.+....+.      ...++.||...++++  ..+....+.....|.+.+++++++++.+.++++
T Consensus        38 ~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG~fe~~l~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~  117 (322)
T 2zhj_A           38 DAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILA  117 (322)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCccHHHHHHHHcCCcHHHHHHHHHHhhhccCCCHHHHHHHHh
Confidence            567778888888888888888776      456777777666652  333456677888888888888888888888888


Q ss_pred             HhcCCCCC------------Cccccccccc-hHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcCC-CCHHHH
Q psy18020        351 VLTEKTEV------------DVDEAVTTTA-PIYKQILNTFTE-----------EAATEDTIYYMGEALRRGV-IDLEVY  405 (434)
Q Consensus       351 ~l~~k~~~------------diDe~i~~~~-~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g~-I~ld~f  405 (434)
                      ...+.+--            ++.+.|..+. --++.++-....           +.|-.|+-- |.+|...|. -+-++|
T Consensus       118 ~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~ll~~~r~e~~~vd~~~a~~dA~~-L~~A~~~~~Gtde~~l  196 (322)
T 2zhj_A          118 SRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQD-LYEAGEKRWGTDEVKF  196 (322)
T ss_dssp             HSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHCCCCCSCCCCHHHHHHHHHH-HHHHTTTSSSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhCccHHHHHHhhcCchHHHHHHHHHhhccccccccCCCHHHHHHHH-HHHhhhcCCCCchHHH
Confidence            76543222            4444332221 124444444444           666666654 556664432 255555


Q ss_pred             HHH
Q psy18020        406 LKQ  408 (434)
Q Consensus       406 lK~  408 (434)
                      ++-
T Consensus       197 i~I  199 (322)
T 2zhj_A          197 LSI  199 (322)
T ss_dssp             HHH
T ss_pred             hHh
Confidence            543

>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...

Probab=90.49  E-value=0.12  Score=50.92  Aligned_cols=77  Identities=19%  Similarity=0.144  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|.+++++.+.+..+.      ...++.||...++++  .-+....+.....|.+.+++++++++.+.++++
T Consensus        35 ~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~  114 (320)
T 1yii_A           35 ETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILA  114 (320)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHHHHHHHHhccCCCchHHHhHHHh
Confidence            567788888889998888888776      346777776666552  333345577788888888888778888888888


Q ss_pred             HhcCC
Q psy18020        351 VLTEK  355 (434)
Q Consensus       351 ~l~~k  355 (434)
                      ...+.
T Consensus       115 ~Rs~~  119 (320)
T 1yii_A          115 SRTPA  119 (320)
T ss_dssp             HSCHH
T ss_pred             cCCHH
Confidence            76543

>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A

Probab=90.33  E-value=0.1  Score=51.09  Aligned_cols=136  Identities=10%  Similarity=0.090  Sum_probs=85.7

Q ss_pred             hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy18020        271 EHIKMSLK----SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENEL-NQGKFK--LARMFERIDKEKAELERSISF  337 (434)
Q Consensus       271 e~~r~sl~----sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL-~~~~~~--L~~~~~eLe~~k~~Le~~i~~  337 (434)
                      +.++++++    .+|.+.|..+-+++++.+....+.      ...++.|| ...+++  +..+....+.....|.+.+++
T Consensus        11 ~~L~kA~kG~de~~lI~IL~~rs~~qr~~I~~~Y~~~yg~dL~~~lksel~sG~fe~~l~~l~~~p~~~DA~~L~~A~kg   90 (310)
T 2ii2_A           11 PEVKAILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKN   90 (310)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCSSHHHHHHHHHHSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHCccHHHHHHHhcCCCCHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence            44555665    567778888888888888888776      45677777 655555  344556678888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC------------Cccccccccch---HHHHHHHhhHH------HHhhhhHHHHHHHHHh
Q psy18020        338 LKEKETELDEILAVLTEKTEV------------DVDEAVTTTAP---IYKQILNTFTE------EAATEDTIYYMGEALR  396 (434)
Q Consensus       338 L~~~~~eLe~~I~~l~~k~~~------------diDe~i~~~~~---l~~Ql~~l~Ae------d~AieDtiy~L~~aL~  396 (434)
                      . ++++.|.++++...+.+-.            ++.+.|..++.   -+++++-.+.+      +.|-.|+-. |.+|..
T Consensus        91 ~-tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~ll~~~R~e~~~a~~DA~~-L~~A~~  168 (310)
T 2ii2_A           91 V-NDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEV-LKHNLI  168 (310)
T ss_dssp             S-CCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHHHHCCCCCCSCHHHHHHH-HHHHHT
T ss_pred             C-CcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHHHhccCCcchHHHHHHHH-HHHHhh
Confidence            8 8888888888876543222            44444433322   34555555554      445566653 556664


Q ss_pred             cC-CCCHHHHHHH
Q psy18020        397 RG-VIDLEVYLKQ  408 (434)
Q Consensus       397 ~g-~I~ld~flK~  408 (434)
                      .+ --|-+.|++-
T Consensus       169 ~~~Gtde~~~i~I  181 (310)
T 2ii2_A          169 DADEPDHEAVVRL  181 (310)
T ss_dssp             TSSSCCHHHHHHH
T ss_pred             cccCCCHHHHHHH
Confidence            31 2244445543

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1

Probab=89.77  E-value=6  Score=40.34  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy18020        281 VEDKIRRKMNEQKVQ---AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE  357 (434)
Q Consensus       281 l~dkL~~~L~e~~~q---~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~  357 (434)
                      -.++|+.|+.+.+..   .+..+.+++..-+.+.......++.+..+++++..++..+..++.++++-++...+.+    
T Consensus       350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~----  425 (602)
T 1cii_A          350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELK----  425 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHH----
Confidence            346788888655443   3444555555555555555667777788888999998888888888777766555432    


Q ss_pred             CCccccccccchHHHHH-------HHhhHHHHh----------hhhHHHHHHHHHh
Q psy18020        358 VDVDEAVTTTAPIYKQI-------LNTFTEEAA----------TEDTIYYMGEALR  396 (434)
Q Consensus       358 ~diDe~i~~~~~l~~Ql-------~~l~Aed~A----------ieDtiy~L~~aL~  396 (434)
                       .+.+++.-++-+|+-+       |..+|+|.|          .+|++-.|++-.+
T Consensus       426 -aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe~fKGKKIRSvDDALaSfEKyk~  480 (602)
T 1cii_A          426 -ATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRA  480 (602)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHTTTTCBCCCHHHHHHHHHHTHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHhc
Confidence             1334443333343333       233344444          6788887776543

>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A

Probab=89.74  E-value=0.1  Score=51.62  Aligned_cols=110  Identities=25%  Similarity=0.275  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      ..|.+.|..|.+++++.+.+..+.      ...++.||...++++  ..+....+.....|.+.++++.++++.+.++++
T Consensus        42 ~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA~~L~~A~~g~Gtde~~lieIL~  121 (327)
T 1w3w_A           42 QAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILA  121 (327)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence            567788888888888888877766      345667776666552  222233377788888888888888888888888


Q ss_pred             HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      ...+.+-..|-+       .|+++|...-|+.-..|+-..+.++|
T Consensus       122 tRs~~ql~~i~~-------~Y~~~yg~sLe~dI~~e~sG~~~~~L  159 (327)
T 1w3w_A          122 SRTKNQLREIMK-------AYEEDYGSSLEEDIQADTSGYLERIL  159 (327)
T ss_dssp             HSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred             hCCHHHHHHHHH-------HHHHHhCccHHHHHhhccCchHHHHH
Confidence            765443333333       55555555555555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.72  E-value=1.6  Score=45.70  Aligned_cols=75  Identities=8%  Similarity=-0.020  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020        320 MFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA  394 (434)
Q Consensus       320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a  394 (434)
                      ++.+++.+...++..+...++....+++.+++.........|+.....+.+-+.+-.+-.+++.+++-...+.++
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  531 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE  531 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence            333333333333333333333333333333333323333444443333444444444444444444444444433

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=88.56  E-value=4.9  Score=31.22  Aligned_cols=40  Identities=13%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        301 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE  344 (434)
Q Consensus       301 e~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e  344 (434)
                      +.|.+.++++...    +..+.+-+.....|...+..|++++.+
T Consensus        31 EELs~vr~~ni~~----eskL~eae~rn~eL~~e~~~l~~~~ee   70 (81)
T 1wt6_A           31 REMEAIRTDNQNF----ASQLREAEARNRDLEAHVRQLQERMEL   70 (81)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445444442    233334444445555555555555555

>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A

Probab=88.44  E-value=0.18  Score=49.54  Aligned_cols=75  Identities=16%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEIL------KQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~L------~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|.+++++.+.+..+.+      ..++.|+...++++  ..+....+.....|.+.+++..++++.+.++++
T Consensus        33 ~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~L~~A~kg~Gtde~~lieIL~  112 (315)
T 1dm5_A           33 KSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILC  112 (315)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHHSSSCCHHHHHHHHS
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHHHHHHHHhhcCCCchhhhhhhHh
Confidence            5677888888888888888877763      45666776655552  223334566667777777777667777777776


Q ss_pred             Hhc
Q psy18020        351 VLT  353 (434)
Q Consensus       351 ~l~  353 (434)
                      ...
T Consensus       113 tRs  115 (315)
T 1dm5_A          113 TQS  115 (315)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.32  E-value=3.7  Score=37.16  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETELDEI  348 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~  348 (434)
                      ..|++++..|+..+..+...|..|+...+.+++.
T Consensus        91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3344444444444444444444444444444443

>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A

Probab=87.81  E-value=0.22  Score=48.27  Aligned_cols=75  Identities=8%  Similarity=0.038  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENEL-NQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEIL  349 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL-~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I  349 (434)
                      .+|.+.|..|-+++++.+....+.      ...++.|| ...++++  .-+....+.....|.+.+++. ++++.+.+++
T Consensus        21 ~~li~IL~~rs~~qr~~I~~~Y~~~yg~~L~~~lk~el~sG~f~~~l~~l~~~~~~~dA~~L~~A~kg~-tde~~lieIL   99 (295)
T 4evf_A           21 VQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVRAQHIRDALSGR-NDHMAFFDTV   99 (295)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSHHHHHHHHHTSCHHHHHHHHHHHHHHSS-CCHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHCcCHHHHHHhhccCCCHHHHHHHHccCchHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence            567778888888888888887776      34677777 4555553  233355677888888888887 7777777777


Q ss_pred             HHhcC
Q psy18020        350 AVLTE  354 (434)
Q Consensus       350 ~~l~~  354 (434)
                      +..++
T Consensus       100 ~~Rs~  104 (295)
T 4evf_A          100 ILCTP  104 (295)
T ss_dssp             TSCCH
T ss_pred             HcCCH
Confidence            75543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.10  E-value=13  Score=32.37  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETEL-DEILAVL  352 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL-e~~I~~l  352 (434)
                      +.|.+++..|+-.-..++..+..|+++.++| ++|+...
T Consensus        99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk  137 (152)
T 3a7p_A           99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT  137 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5588888888888888888888888877665 7777654

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=86.88  E-value=9.6  Score=30.11  Aligned_cols=54  Identities=24%  Similarity=0.272  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +..++.-.-.+.+|...+..|+..+..|+.+...-++.|..|+.++++.-+.|+
T Consensus        10 e~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~   63 (101)
T 1d7m_A           10 ENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE   63 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            344444455566666666667777777777777777777777766666544443

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=86.84  E-value=18  Score=33.24  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=19.4

Q ss_pred             HhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020        376 NTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK  415 (434)
Q Consensus       376 ~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe  415 (434)
                      +|+|=..+||=+     ||=..|+ .|.+--..||+||.+
T Consensus        94 nlLALNAaIEAA-----raGe~Gr-GFaVVA~Evr~La~~  127 (213)
T 3g67_A           94 NILALNATIEAA-----RAGEAGK-GFMIVANEVQNLSNE  127 (213)
T ss_dssp             HHHHHHHHHHHH-----HHCGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHH-----hhccccc-chHHHHHHHHHHHHH
Confidence            445555555433     3333342 577777888888764

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.75  E-value=8.9  Score=31.01  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        283 DKIRRKMNEQKVQAQEEIEILKQTENELNQ  312 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~  312 (434)
                      ++|+.+++..+......++...+.+..+..
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~~k~   34 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEADKKA   34 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555444444444544444444444

>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A

Probab=86.56  E-value=0.13  Score=50.63  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..|-+++++.+.+..+.      ...++.||...++++  ..+....+.....|.+.+++.+++++.+.++++
T Consensus        37 ~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~l~~A~kg~Gtde~~lieIL~  116 (321)
T 1n00_A           37 GLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEIAC  116 (321)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCSSCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChhHHHHHHHHHHhhccCCCHHHHHHHHh
Confidence            567778888888888888777766      346677776666552  333344556666677776666666667777776


Q ss_pred             HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020        351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL  395 (434)
Q Consensus       351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL  395 (434)
                      ..++.+-..|-+       .|+++|...-|+.-..|+-..+.++|
T Consensus       117 tRs~~ql~~i~~-------~Y~~~~g~~Le~dI~~e~sG~~~~~L  154 (321)
T 1n00_A          117 TRSANQLLHARQ-------AYHARYKKSLEEDVAHHTTGDFHKLL  154 (321)
T ss_dssp             SSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred             cCCHHHHHHHHH-------HHHHHhCccHHHHHHhccCcHHHHHH
Confidence            654333323333       45566655555555555555555544

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=86.29  E-value=5.7  Score=30.87  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+..+|++...+++.--++++.++..|+..+.+-++...+|+.....|+.-|..|.+-.+.|.+.+.
T Consensus        10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A           10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            3444554444444444456777777777777777776667666666666666666655555555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.93  E-value=2.4  Score=48.30  Aligned_cols=25  Identities=8%  Similarity=0.048  Sum_probs=14.6

Q ss_pred             CCCHHHHHHHHHHHhCCCCCccccC
Q psy18020         62 NSKLEGLIKTLASAFSALPPLYSSR   86 (434)
Q Consensus        62 ~s~L~~li~~l~~~F~~~pPl~~~~   86 (434)
                      +++=..|++-|...|-...|.|.++
T Consensus       517 ~~tD~~f~~kl~~~~~~~~~~f~~p  541 (1080)
T 2dfs_A          517 KGSDDTWAQKLYNTHLNKCALFEKP  541 (1080)
T ss_dssp             TCCHHHHHHHHHHHHBTTBSSEECC
T ss_pred             CCChHHHHHHHHHHhhcCCCCccCC
Confidence            4455567777777773344555554

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=85.90  E-value=9.8  Score=28.99  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL  345 (434)
Q Consensus       286 ~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL  345 (434)
                      ..+|++....++.--++++.++..|+..+.+-++...+|+.....|+.-|..|.+-.+.|
T Consensus         6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L   65 (72)
T 3cve_A            6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444333333434456667777776666665555555555555555555554433333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=85.83  E-value=9.8  Score=28.86  Aligned_cols=64  Identities=13%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        281 VEDKIRRKMNEQKVQAQEEIEILKQTE-NELNQGKFKLARMFERIDKEKAELERSISFLKEKETE  344 (434)
Q Consensus       281 l~dkL~~~L~e~~~q~~~ele~L~~~q-~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e  344 (434)
                      +..-++..-.+...++++++|...+.+ ++|...-.+-.+.+...+.+-.+|...|+.|+.+++.
T Consensus        10 il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s   74 (77)
T 3trt_A           10 AMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334566666666666677777765544 2333333333333333444444455555555554443

>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1

Probab=85.33  E-value=8.3  Score=31.50  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL  349 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I  349 (434)
                      +....|..+-++.|.+.-.++.-..|-++.+..|.-+.+-.+......|.+.+..|+..-..+.++.+++.+.+
T Consensus        56 SFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklm  129 (142)
T 1pl5_A           56 SFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLM  129 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44455666667777777777777788899999999999999999999999999999888777776666654433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=85.14  E-value=4  Score=46.92  Aligned_cols=24  Identities=4%  Similarity=0.112  Sum_probs=15.7

Q ss_pred             CCCHHHHHHHHHHHhCCCCCccccC
Q psy18020         62 NSKLEGLIKTLASAFSALPPLYSSR   86 (434)
Q Consensus        62 ~s~L~~li~~l~~~F~~~pPl~~~~   86 (434)
                      +.+=..|++-|...|+. .|.|.++
T Consensus       548 ~~td~~~~~kl~~~~~~-~~~~~~~  571 (1184)
T 1i84_S          548 KATDTSFVEKLIQEQGN-HAKFQKS  571 (1184)
T ss_dssp             TCCHHHHHHHHHHHTSS-CTTEEEC
T ss_pred             CCChHHHHHHHHHHhCC-CCCccCC
Confidence            45556677888888854 4566654

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.61  E-value=12  Score=28.76  Aligned_cols=49  Identities=27%  Similarity=0.267  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      +|..++..|+--+..|-.-+.+|..++..|+..+..+.+....++.-+.
T Consensus        20 eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~   68 (77)
T 2w83_C           20 QLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR   68 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555444444444444444555444444444444444444443

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=84.60  E-value=0.36  Score=42.28  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             cCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccC
Q psy18020          5 SGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTP   60 (434)
Q Consensus         5 ~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~   60 (434)
                      .-.+|-+-+.|=+|.+||+.||.|-. |+.++   ....|+.+|+|+|..+  |.+
T Consensus        81 ~~~kyeFkLefdiP~tYP~tPPeI~F-p~ldg---kt~kmYr~GkICLdIh--wkP  130 (168)
T 3kpa_A           81 KNEKYEFEMNFDIPVTYPQAPPEIAL-PELEG---KTVKMYRGGKICMTTH--FFP  130 (168)
T ss_dssp             TTEEEEEEEEEECCTTTTTSCCCCBC-GGGTT---TCSSEETTTEECCCTT--HHH
T ss_pred             ccceeEEEEEEeCCccCCCCCCEeec-ccccC---cCccccCCCcEEeccc--cch
Confidence            33478999999999999999999866 55322   3367789999998874  864

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=84.13  E-value=1.7  Score=35.07  Aligned_cols=16  Identities=38%  Similarity=0.524  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy18020        317 LARMFERIDKEKAELE  332 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le  332 (434)
                      |+.++.+|+.+-..||
T Consensus        52 L~~EI~~L~~eI~~LE   67 (96)
T 1t3j_A           52 LEEEIARLSKEIDQLE   67 (96)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.13  E-value=13  Score=28.73  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18020        285 IRRKMNEQKVQAQEEIEILKQTENELNQGK  314 (434)
Q Consensus       285 L~~~L~e~~~q~~~ele~L~~~q~EL~~~~  314 (434)
                      |+.+++..........+.+...+..|....
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e   33 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAE   33 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445554444444445555555555555533

>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1

Probab=84.10  E-value=9.7  Score=31.86  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL  349 (434)
Q Consensus       276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I  349 (434)
                      +....|..+-++.|.+.-.++.-..|-++.+..|.-+.+-.|......|.+.+..|+..-..+.++.+++.+.+
T Consensus        80 SFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklm  153 (166)
T 1nyh_A           80 SFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLM  153 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44556666777777777777777788899999999999999999999999999999988777776666655433

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}

Probab=83.85  E-value=28  Score=34.90  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHh-hHHHHhhhhHHHHHHHHHh---cC-
Q psy18020        324 IDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNT-FTEEAATEDTIYYMGEALR---RG-  398 (434)
Q Consensus       324 Le~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l-~Aed~AieDtiy~L~~aL~---~g-  398 (434)
                      +...+.+|...+..+......+.+....+++.++.|...+-.+.+++-.-++++ ++.  .+.|=|.-|.+++.   .| 
T Consensus       421 fsgIrkELsdKleN~NnNlndf~~sfneLKNgKn~dfSKV~qt~s~le~Sikd~iInq--kV~aKIDNLNQaaSefKnGK  498 (569)
T 4dvz_A          421 LKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINP--EWISKVENLNAALNEFKNGK  498 (569)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHTC-
T ss_pred             hHHhHHHHHHHHhhhhccchhhcccchhhccCCCchHHHHhhhccccccChhhhhhhH--HHHHhHHHHHHHHHHhcCCC
Confidence            333344444444444444445555556777777777777666667766667776 444  56677777777775   33 


Q ss_pred             CCCHHH-------HHHHHHHHHHHHHHH
Q psy18020        399 VIDLEV-------YLKQVRSLSRKQFMF  419 (434)
Q Consensus       399 ~I~ld~-------flK~vR~LaReQF~~  419 (434)
                      ..||..       .=+..-.|+|+|=+.
T Consensus       499 ngDFSkVgQAlsdLKnSkvgLsrnQELt  526 (569)
T 4dvz_A          499 NKDFSKVTQAKSDLENSVKDVIINQKVT  526 (569)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhhhhhhHHHhhhhhhhhhHHHH
Confidence            234432       122566788988443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.66  E-value=15  Score=29.52  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        283 DKIRRKMNEQKVQAQEEIEILKQTENELNQ  312 (434)
Q Consensus       283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~  312 (434)
                      +.|+.+++..+......++...+.+.++..
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~   34 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQ   34 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555554444444444544444444444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=83.33  E-value=9  Score=34.64  Aligned_cols=19  Identities=21%  Similarity=0.277  Sum_probs=11.0

Q ss_pred             HhhhhHHHHHHHHHhcCCC
Q psy18020        382 AATEDTIYYMGEALRRGVI  400 (434)
Q Consensus       382 ~AieDtiy~L~~aL~~g~I  400 (434)
                      ..++|.=.-|++|+.++.+
T Consensus       130 ~SleD~e~kln~aiEr~al  148 (189)
T 2v71_A          130 MSLEDFEQRLNQAIERNAF  148 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            3455555566666666543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.89  E-value=11  Score=32.20  Aligned_cols=9  Identities=11%  Similarity=0.102  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q psy18020        337 FLKEKETEL  345 (434)
Q Consensus       337 ~L~~~~~eL  345 (434)
                      .|+.++.+|
T Consensus       121 ~l~~~~~~l  129 (138)
T 3hnw_A          121 KYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}

Probab=82.75  E-value=8  Score=36.13  Aligned_cols=40  Identities=15%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020        315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE  354 (434)
Q Consensus       315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~  354 (434)
                      ..|+..++.|+..+..+.+.+..|++++.+|+..|..+++
T Consensus       180 ~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~  219 (242)
T 3uux_B          180 RDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD  219 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3488888888888888888888888888888887766653

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.87  E-value=17  Score=28.58  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ++..++.......+|.....+|..+...|.......+..+.+|.....+|+..|..+
T Consensus        26 lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el   82 (89)
T 3bas_A           26 MKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555555555555555555555555566666666666666655554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.31  E-value=35  Score=31.82  Aligned_cols=102  Identities=10%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----Ccccccccc
Q psy18020        293 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV-----DVDEAVTTT  367 (434)
Q Consensus       293 ~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~-----diDe~i~~~  367 (434)
                      +..+..+++.+....+.|...-.+++..+..++.....++..+..+..+++..++-+...++..+.     +|+.+-.-.
T Consensus        27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i  106 (256)
T 3na7_A           27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS  106 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            334456666666666666666677777888888888888888888888877777777654432221     233322223


Q ss_pred             chHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020        368 APIYKQILNTFTEEAATEDTIYYMGEA  394 (434)
Q Consensus       368 ~~l~~Ql~~l~Aed~AieDtiy~L~~a  394 (434)
                      .-+-+.++++..+-.+++..+..+...
T Consensus       107 ~~lE~eile~~e~ie~~~~~l~~~~~~  133 (256)
T 3na7_A          107 NQANREIENLQNEIKRKSEKQEDLKKE  133 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555544444444444333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.13  E-value=5.2  Score=41.46  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHH
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQ  373 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Q  373 (434)
                      +.++++++.+.+...+-..   -.+.+++.|+........+-..+.+-.++|++-|..|+    ..||+-|.--.+|-+.
T Consensus        67 NELKnqLEdlsKnsKdseq---y~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK----ekVdnQlsnIrvLQsn  139 (562)
T 3ghg_A           67 NKLKNSLFEYQKNNKDSHS---LTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK----RKVIEKVQHIQLLQKN  139 (562)
T ss_dssp             HHHHHHHTHHHHHHHHHHH---HHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhchhHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            3334445554444433333   23444444444444444444444444445555555552    2444444444556666


Q ss_pred             HHHhhHHHHhhhhHHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy18020        374 ILNTFTEEAATEDTIYYMGEALRR-------GVIDLEVYLKQVRSL  412 (434)
Q Consensus       374 l~~l~Aed~AieDtiy~L~~aL~~-------g~I~ld~flK~vR~L  412 (434)
                      |=+++.|..-||=.|..=-|.=+-       -.||++.|.-+=++|
T Consensus       140 Ledq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL  185 (562)
T 3ghg_A          140 VRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL  185 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence            667777777777666654444331       267888887766655

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=81.01  E-value=3.2  Score=28.49  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      +-+++.+|..-.+.||++|..|+.+.+.|.+.++.+
T Consensus         7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL   42 (43)
T 2pnv_A            7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL   42 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            456677788888888889999998888888877643

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=81.00  E-value=13  Score=37.81  Aligned_cols=92  Identities=23%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA  382 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~  382 (434)
                      ...+.+.|+..+...++--....+..+.|++.+..|+++++.--..|..                  |-+.|-+++.|..
T Consensus        88 ~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Irv------------------Lq~~l~~q~skIQ  149 (491)
T 1m1j_A           88 IVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKA------------------LQNSIQEQVVEMK  149 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Confidence            4445555555555555555555556666666666665555544444443                  3344445555555


Q ss_pred             hhhhHHHHHHHHHh----c---CCCCHHHHHHHHHHH
Q psy18020        383 ATEDTIYYMGEALR----R---GVIDLEVYLKQVRSL  412 (434)
Q Consensus       383 AieDtiy~L~~aL~----~---g~I~ld~flK~vR~L  412 (434)
                      -||-.|..=-+.-+    |   -+||++.|.-+=+.|
T Consensus       150 RLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqL  186 (491)
T 1m1j_A          150 RLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHL  186 (491)
T ss_dssp             HHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHH
Confidence            55555553222211    1   167777775554433

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=80.66  E-value=21  Score=28.94  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020        294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL  352 (434)
Q Consensus       294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l  352 (434)
                      ....=+++.|+..-.|++.....++++..+...+...++..+..|+.+.+.+..-|...
T Consensus        26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR   84 (103)
T 4h22_A           26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR   84 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445555555555555555777777777777777777888888888887777643

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=80.07  E-value=35  Score=43.28  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFL  338 (434)
Q Consensus       303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L  338 (434)
                      |...+.+|+....+.+.++.++..++++.++.-...
T Consensus      1943 L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A         1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555544445555555555544444433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d2f6ma1	64	a.2.17.1 (A:322-385) Vacuolar protein sorting-asso	4e-24
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-19
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-09
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-13
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	4e-06
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.002
d2ap3a1	185	a.24.27.1 (A:12-196) Hypothetical protein MW0975 (	0.004

>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 64

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS23 C-terminal domain
domain: Vacuolar protein sorting-associated protein 23, VPS23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.4 bits (230), Expect = 4e-24
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 369 PIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
               Q+ N   ++ A  DTI  +   L RG I L+ ++KQ R L+R+QF+ R  + +   
Sbjct: 2   DGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITS 61

Query: 429 HIS 431
            +S
Sbjct: 62  PLS 64

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 2e-19
 Identities = 38/83 (45%), Positives = 53/83 (63%)

Query: 2   TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQ 61
               G  Y+IP+C+WL+DT+P + PIC+V+PT+ M I   ++VD  GKIY PYLH W   
Sbjct: 59  VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 118

Query: 62  NSKLEGLIKTLASAFSALPPLYS 84
            S L GLI+ +   F   PP++S
Sbjct: 119 QSDLLGLIQVMIVVFGDEPPVFS 141

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
           ++PT+ M I   ++VD  GKIY PYLH W    S L GLI+ +   F   PP++S
Sbjct: 87  VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 141

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 6   GLVYHIPVCIWLMDTHPDHAPICYVRP------TADMRINVSQNVDHTGKIYSPYLHTWT 59
              + IPV +W+   +P   P   +        T    + + + +D  G I  P LH W 
Sbjct: 69  SSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWD 128

Query: 60  PQNSKLEGLIKTLASAFSALPP 81
           P    L  +++ L S     P 
Sbjct: 129 PAAMNLIMVVQELMSLLHEPPQ 150

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 79  LPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEG 138
           +P +Y     + P  +         T    + + + +D  G I  P LH W      L  
Sbjct: 80  VPSMYPV---KPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIM 136

Query: 139 LIKTLASAFSALPP 152
           +++ L S     P 
Sbjct: 137 VVQELMSLLHEPPQ 150

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 10/115 (8%)

Query: 239 LYPPGGSTPATPYPVPTPSPAPAVTSGGTITD-----EHIKMSLKSAVEDKIRRKMNEQK 293
           L PP  S    P       P     S   I       E  +   ++ +   +  K   ++
Sbjct: 21  LKPP--SFDGVP-EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77

Query: 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 348
              Q+ IE          +      +M    +  +A L   +  L+EK+   +E+
Sbjct: 78  EVIQKAIEENNNFIKMAKEKL--AQKMESNKENREAHLAAMLERLQEKDKHAEEV 130

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Length = 185

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 8/63 (12%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
                ++ +  +   + +    Q+    E+ + ++Q   +L +   K  ++  ++ KEK 
Sbjct: 124 AYKKAVNSEKTLFKYLNQNDATQQ-GVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 182

Query: 330 ELE 332
           +++
Sbjct: 183 DVD 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d2f6ma1	64	Vacuolar protein sorting-associated protein 23, VP	99.95
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.88
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.84
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.05
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	98.79
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	97.76
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.68
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.5
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	97.49
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.46
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.43
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	97.39
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	97.37
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	97.34
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.33
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	97.31
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.29
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	97.21
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.21
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.2
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.18
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	97.18
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	97.15
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	97.12
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	97.08
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.99
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	96.79
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	96.68
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	96.66
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	96.41
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	96.3
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	96.28
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.48
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.38
d1n00a_	318	Annexin GH1 {Cotton (Gossypium hirsutum) [TaxId: 3	91.09
d1w7ba_	319	Annexin II {Human (Homo sapiens) [TaxId: 9606]}	89.86
d1hm6a_	343	Annexin I {Pig (Sus scrofa) [TaxId: 9823]}	89.55
d2ie7a1	318	Annexin V {Rat (Rattus norvegicus) [TaxId: 10116]}	87.44
d1avca1	341	Annexin VI {Cow (Bos taurus) [TaxId: 9913]}	84.32
d1dm5a_	315	Annexin XII {Hydra vulgaris [TaxId: 6087]}	84.21
d1axna_	323	Annexin III {Human (Homo sapiens) [TaxId: 9606]}	81.36
d1ek9a_	428	Integral outer membrane protein TolC, efflux pump	81.29
d2f6mb1	104	Vacuolar protein sorting-associated protein 28, VP	81.09
d1i4aa_	309	Annexin IV {Cow (Bos taurus) [TaxId: 9913]}	81.08

>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS23 C-terminal domain
domain: Vacuolar protein sorting-associated protein 23, VPS23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=183.39  Aligned_cols=63  Identities=30%  Similarity=0.437  Sum_probs=60.7

Q ss_pred             chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020        368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI  430 (434)
Q Consensus       368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~  430 (434)
                      |+..||||+|+|||+|||||||+|++||++|+|++|+|||+||.|||||||+||+|+||+..+
T Consensus         1 t~a~nQl~~l~Aed~AieDaiy~L~~aL~~G~I~~d~ylK~vR~LaReQF~~RAl~~KI~~~l   63 (64)
T d2f6ma1           1 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            467899999999999999999999999999999999999999999999999999999999875

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-23  Score=183.83  Aligned_cols=83  Identities=46%  Similarity=0.990  Sum_probs=81.0

Q ss_pred             eeecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020          2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPP   81 (434)
Q Consensus         2 v~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~~pP   81 (434)
                      |.|+|.+|+|||.||+|++||+.||+|||+||.+|.|+.+++||.+|+|+|+||++|..+.++|.+|++.|+.+|+++||
T Consensus        59 ~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e~P  138 (141)
T d1s1qa_          59 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP  138 (141)
T ss_dssp             EEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCS
T ss_pred             cccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             ccc
Q psy18020         82 LYS   84 (434)
Q Consensus        82 l~~   84 (434)
                      ||+
T Consensus       139 l~s  141 (141)
T d1s1qa_         139 VFS  141 (141)
T ss_dssp             EEC
T ss_pred             CCC
Confidence            986

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.1e-22  Score=175.69  Aligned_cols=80  Identities=25%  Similarity=0.453  Sum_probs=66.4

Q ss_pred             eeecCcc-cccceEEEecCCCCCCCCEeEEecC------CCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHH
Q psy18020          2 TNLSGLV-YHIPVCIWLMDTHPDHAPICYVRPT------ADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLAS   74 (434)
Q Consensus         2 v~~~g~~-y~iPi~iwl~~~yP~~~P~~~v~pt------~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~   74 (434)
                      |.|+|.+ |||||+||||++||+.||+|||+++      .+|.|+.++|||.+|+|+|+||++|..++++|++||+.|+.
T Consensus        64 i~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~  143 (152)
T d1uzxa_          64 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMS  143 (152)
T ss_dssp             CC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHT
T ss_pred             cccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHH
Confidence            6789986 9999999999999999999999874      57888999999999999999999999899999999999999


Q ss_pred             HhCCCCC
Q psy18020         75 AFSALPP   81 (434)
Q Consensus        75 ~F~~~pP   81 (434)
                      .|+++|+
T Consensus       144 ~f~~~P~  150 (152)
T d1uzxa_         144 LLHEPPQ  150 (152)
T ss_dssp             GGGSCCC
T ss_pred             HhcCCCC
Confidence            9998865

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-11  Score=106.90  Aligned_cols=57  Identities=42%  Similarity=0.823  Sum_probs=55.5

Q ss_pred             CCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCCCC
Q psy18020         99 GNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS  155 (434)
Q Consensus        99 ~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~~s  155 (434)
                      +|+.||.+|.++.+.+||.+|+|++|||++|+.+.|+|.+|++.|+..|+++||+||
T Consensus        85 v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e~Pl~s  141 (141)
T d1s1qa_          85 CFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS  141 (141)
T ss_dssp             EEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEC
T ss_pred             EEEecCCCccccCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCCCCCCCC
Confidence            788999999999999999999999999999999999999999999999999999996

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=6.2e-10  Score=97.11  Aligned_cols=69  Identities=23%  Similarity=0.363  Sum_probs=53.4

Q ss_pred             HHhCCCCCccccCCCCCCCCCCCCCCCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCC
Q psy18020         74 SAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPP  152 (434)
Q Consensus        74 ~~F~~~pPl~~~~~~~~p~~~p~~~~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp  152 (434)
                      ..|...||++.-..          ..+.++|.+|.++.+.+||.+|+|++|||++|+++.|+|.+||+.|+..|+++|+
T Consensus        82 ~~YP~~pP~v~~~~----------~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_          82 SMYPVKPPFISINL----------ENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             TTTTTSCCEEEECC----------TTCCSCC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             CCCCCCCCEEEEec----------CcccccCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCC
Confidence            45666666644320          1345678889999999999999999999999999999999999999999998875

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.9e-05  Score=63.65  Aligned_cols=67  Identities=18%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHh
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F   76 (434)
                      |.|..|  -+.|.++++||+.||.|... |..  .+-+++||.+|+|++..|.+ |++ ..++..++..+...+
T Consensus        49 y~gg~f--~~~i~fp~~YP~~pP~v~F~-t~~--~~~Hpnv~~~G~iCl~~l~~~Wsp-~~ti~~vl~~i~~lL  116 (117)
T d2a7la1          49 YEGEKF--QLLFKFSSRYPFDSPQVMFT-GEN--IPVHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISML  116 (117)
T ss_dssp             TTTCEE--EEEEEECTTTTTSCCEEEEE-SSC--CCCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHT
T ss_pred             ccCCee--eEEEecCcccccCCCEEEEe-CCC--ccccccCcCCCeEEeecCcCCCCC-cCcHHHHHHHHHHHh
Confidence            455555  48999999999999998553 211  12368899999999999985 987 778888888776543

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=97.68  E-value=4e-05  Score=65.07  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccC-CCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTP-QNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~-~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|+.. |.    .-+++|+.+|.|++..|+.|.+ +..++..++..+...|.+
T Consensus        43 Y~gg~f--~~~i~fp~~YP~~pP~v~f~-t~----i~HPnV~~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~  111 (144)
T d1c4zd_          43 YDKGAF--RIEINFPAEYPFKPPKITFK-TK----IYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVND  111 (144)
T ss_dssp             CCSCCE--EEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHS
T ss_pred             ccCCEE--EEEEEecCcccCCCceeecc-CC----CCCcCCccCCccccccccCCCCCCcccHHHHHHHHHHHHhC
Confidence            556555  68999999999999999873 22    2357899999999999996433 478999999999988864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=97.50  E-value=8.6e-05  Score=63.93  Aligned_cols=66  Identities=18%  Similarity=0.429  Sum_probs=54.3

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc---cccCCCCCHHHHHHHHHHHhC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH---TWTPQNSKLEGLIKTLASAFS   77 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~---~W~~~~s~L~~li~~l~~~F~   77 (434)
                      |.|..|  -+.|.++++||+.||.|++...     .-+++||.+|+|++..|+   +|++ ..+|.+++..+...|.
T Consensus        51 Y~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~G~icl~~l~~~~~W~p-~~ti~~il~~i~~ll~  119 (156)
T d2uyza1          51 WEGGLF--KLRMLFKDDYPSSPPKCKFEPP-----LFHPNVYPSGTVSLSILEEDKDWRP-AITIKQILLGIQELLN  119 (156)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEESSC-----CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHH
T ss_pred             ccCCEE--EEEEeCCccccCCCceeeeccc-----cccccccccceeeecccCcccccCC-cccHHHHHHHHHHHhc
Confidence            455555  5788999999999999988532     336899999999999886   6877 7899999999999884

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=97.49  E-value=8.9e-05  Score=63.20  Aligned_cols=63  Identities=13%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +.+.|.+|++||+.||.|+..-.     .=+++||.+|.|++..|.+|..+..+|.+++..+...|..
T Consensus        52 f~~~i~~p~~YP~~pP~v~f~t~-----i~HPnI~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~  114 (149)
T d1z3da1          52 FKLSLEFTEEYPNKPPTVKFISK-----MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDE  114 (149)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSS
T ss_pred             EEEEEEecCcCCCCCcEEEecCc-----ccceeEcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999987422     2357899999999999887766788999999999988853

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=97.46  E-value=9.1e-05  Score=63.20  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=53.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|.+|  -+.|.++++||+.||.|+....     .-+++||.+|.|++..|+  .|.+ ..++.+++..+...|..
T Consensus        44 y~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HpnI~~~G~icl~~l~~~~W~p-~~~i~~il~~i~~ll~~  112 (150)
T d1wzva1          44 YHLKAF--NLRISFPPEYPFKPPMIKFTTK-----IYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR  112 (150)
T ss_dssp             GGGEEE--EEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCcee--eEEEecCcCCccCCceeeccCC-----CCcceECCCCCcccccccccCCCc-hhHHHHHHHHHHHHHhC
Confidence            556665  4689999999999999977432     235789999999999996  3554 78999999999998853

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=62.69  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +.+.|.+|.+||+.||.|+..-.     .-+++||.+|+|++..|.+|..+..++.+++..+...|..
T Consensus        46 y~gg~--f~~~i~fp~~YP~~pP~v~f~t~-----i~HPni~~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~  113 (149)
T d1j7db_          46 FEGGT--FKLELFLPEEYPMAAPKVRFMTK-----IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA  113 (149)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHS
T ss_pred             cCCCE--EEEEEecCCcccCCCceeeecCC-----CCCceECCCCcEehHHhcCCCCCCccHHHHHHHHHHHHhC
Confidence            44444  47889999999999999877422     2358899999999999977655688999999988887753

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=97.39  E-value=0.00014  Score=62.47  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.++++||+.||.|+.. |.    .-+++||.+|+|++..|.+|..+..+|.+++..+...|.+
T Consensus        53 yegg~f--~~~i~fp~~YP~~pP~v~f~-t~----i~Hpnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~  120 (156)
T d2e2ca_          53 YESLKY--KLTLEFPSDYPYKPPVVKFT-TP----CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGE  120 (156)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTS
T ss_pred             cCCCEE--EEEEEecCCCCCCCceeecc-cc----CcCCCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhC
Confidence            444444  68999999999999999884 21    2357899999999998877544589999999999888754

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=97.37  E-value=0.00017  Score=61.53  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFS   77 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~   77 (434)
                      +-+.|.+|.+||+.||.|+....     .-+++|+.+|.|++.+|.+|..+..++.+++..+...|.
T Consensus        52 f~~~i~~p~~YP~~pP~v~f~t~-----i~HPnI~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  113 (153)
T d1ayza_          52 FRLLLEFDEEYPNKPPHVKFLSE-----MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFN  113 (153)
T ss_dssp             EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHT
T ss_pred             EEEEEecCccccCCCCeeeeccC-----CCccCCCCCCccccccccccCCCcCcHHHHHHHHHHHHc
Confidence            47889999999999999987432     235889999999999997765568899999999999885

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=97.34  E-value=0.00018  Score=61.59  Aligned_cols=63  Identities=17%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +.+.|.+|.+||+.||.|+....     .-+++||.+|.+++..|..|..+..+|..++..+...|.+
T Consensus        52 f~~~i~fp~~YP~~pP~v~F~t~-----i~HPnI~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~  114 (152)
T d1jata_          52 FELELYLPDDYPMEAPKVRFLTK-----IYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLAS  114 (152)
T ss_dssp             EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEecCccCCCCCcEEEecCC-----CCCCcCCCCCCeeeccccccCCchhHHHHHHHHHHHHHcC
Confidence            46899999999999999877432     2358899999999999888766789999999999998865

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=97.33  E-value=0.00015  Score=61.92  Aligned_cols=62  Identities=16%  Similarity=0.323  Sum_probs=50.2

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-----cccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-----TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-----~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|.+|++||+.||.|+..-.     .-+++||.+|+|++..|.     .|++ ..++..++..+...|.+
T Consensus        51 f~~~i~~p~~YP~~pP~v~f~t~-----i~HPnV~~~g~icl~~l~~~~~~~w~p-~~~i~~il~~i~~ll~~  117 (154)
T d1yh2a1          51 FKLEVIIPERYPFEPPQIRFLTP-----IYHPNIDSAGRICLDVLKLPPKGAWRP-SLNIATVLTSIQLLMSE  117 (154)
T ss_dssp             EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHHHHHHHHHHHS
T ss_pred             EEEEEecCccccCCCceeeccCC-----CCcCCcCCCCCcccccccCCccccCCc-cccHHHHHHHHHHHhcc
Confidence            45699999999999999988432     236899999999999996     5765 77888888888887743

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=97.31  E-value=0.0002  Score=60.68  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=52.9

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|-+|++||+.||.|+...+     .-+++||.+|+|++..|.+|..+..++.+++..+...|.+
T Consensus        50 f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~  112 (147)
T d1z2ua1          50 FFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD  112 (147)
T ss_dssp             EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             eEEEEecCcCCCCCCceEEEecC-----CceeeECCCCCEeeehhcccCCCCCCHHHHHHHHHHHhcc
Confidence            46788899999999999987532     2358999999999999998877788999999998887754

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=97.29  E-value=0.00023  Score=60.50  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..  +-+.|.++.+||+.||.|+..-.     .-+++||.+|+|++..|.++..+..++.+++..+...|.+
T Consensus        45 y~gg~--f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~  112 (146)
T d1i7ka_          45 YEDLR--YKLSLEFPSGYPYNAPTVKFLTP-----CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGE  112 (146)
T ss_dssp             TBTCE--EEEEEECCTTTTTSCCEEEESSC-----CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             ccCCE--EEEEEEecCCCCcCCceeeecCC-----CCcccCCCCCccccccccccCCCCcCHHHHHHHHHHHHhC
Confidence            44444  46889999999999999987433     2358899999999887655433578899999999888864

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=97.21  E-value=0.00019  Score=61.35  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=52.8

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |+|..  +.+.|.++++||+.||.|+....     .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus        50 y~gg~--f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnI~~~G~ic~~~l~~~W~p-~~~l~~il~~i~~~l~~  117 (151)
T d1zdna1          50 YAGGL--FRMKLLLGKDFPASPPKGYFLTK-----IFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLTIKCLLIH  117 (151)
T ss_dssp             TTTCE--EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred             ccCCc--eeeeeecCCCCCCCCceeecCCC-----CCCceecCCCCcccccccccCCc-cccHHHHHHHHHHHHhC
Confidence            44544  45799999999999999987432     234789999999987765 5986 78899999999988853

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=97.21  E-value=0.00029  Score=59.75  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      +-+.|-+|++||+.||.|+.. |.    .-+++||.+|.|++..|.+|..+..+|.+++..+...|.+
T Consensus        51 f~~~i~~p~~YP~~pP~v~f~-t~----i~HPnv~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~  113 (148)
T d1y6la_          51 FFLDITFSPDYPFKPPKVTFR-TR----IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD  113 (148)
T ss_dssp             EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEecCcccCCCCcEEEEe-CC----CcCceECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhC
Confidence            367788899999999999774 32    2258999999999999988655688999999999988854

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=97.20  E-value=0.00036  Score=57.60  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=51.8

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--------------cccCCCCCHHHHH
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--------------TWTPQNSKLEGLI   69 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--------------~W~~~~s~L~~li   69 (434)
                      |.|..|.  +.|-+|++||+.||.|... |.    .-+++||.+|+|++..|+              +|++ ..++..++
T Consensus        44 yegg~f~--~~i~fp~~YP~~pP~v~f~-t~----i~Hpni~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp-~~ti~~iL  115 (125)
T d2awfa1          44 YEGGVFK--AHLTFPKDYPLRPPKMKFI-TE----IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIM  115 (125)
T ss_dssp             TTTCEEE--EEEECCTTTTSSCCEEEEC-SC----CCCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHH
T ss_pred             cCCCeeE--EEEecCCCcCCCCCeEEec-CC----CCccccCCCCEEEeccccCccccccccccccCCcCc-cCcHHHHH
Confidence            4555544  5888999999999998774 32    236889999999999985              4876 88999999


Q ss_pred             HHHHHHhC
Q psy18020         70 KTLASAFS   77 (434)
Q Consensus        70 ~~l~~~F~   77 (434)
                      ..+...|.
T Consensus       116 ~~i~~ll~  123 (125)
T d2awfa1         116 ISVISMLA  123 (125)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhh
Confidence            88887763

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=97.18  E-value=0.00025  Score=61.02  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.++++||+.||.|+....     .-+++||.+|+|++..|.+|..+..+|.+++..+...|.+
T Consensus        45 Y~gg~f--~~~i~fp~~YP~~pP~V~f~t~-----i~HPnv~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~  112 (157)
T d1y8xa1          45 YKSGKF--VFSFKVGQGYPHDPPKVKCETM-----VYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLE  112 (157)
T ss_dssp             TTTBCE--EEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             cCCCeE--EEEEEecCCCCCCCceeeeccc-----CCCccccccceeeeeecccCCCCCCcHHHHHHHHHHHHcC
Confidence            555554  5677789999999999987421     2358899999999888755444588999999999998864

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.18  E-value=0.00031  Score=60.10  Aligned_cols=68  Identities=21%  Similarity=0.200  Sum_probs=52.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  .+.|.++++||+.||.|+....     .-+++||. +|.|++..|.+|..+..+|.+++..+...|..
T Consensus        51 y~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~  119 (154)
T d2bepa1          51 YEGGRY--QLEIKIPETYPFNPPKVRFITK-----IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAA  119 (154)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             ccCCee--EEEEeccccccCCCCcceeccc-----CCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcC
Confidence            344444  6899999999999999987422     24578997 89999877766444578999999999998864

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=97.15  E-value=0.00031  Score=60.46  Aligned_cols=63  Identities=17%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc--------------ccCCCCCHHHHHHHHHHH
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT--------------WTPQNSKLEGLIKTLASA   75 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~--------------W~~~~s~L~~li~~l~~~   75 (434)
                      -+.+.|.+|++||+.||.|+....     .=+++||.+|.|++..|+.              |++ ..++..++..+...
T Consensus        49 ~f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p-~~~i~~iL~~i~~l  122 (161)
T d1pzva_          49 FFKAILDFPRDYPQKPPKMKFISE-----IWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLP-VHTVETILLSVISM  122 (161)
T ss_dssp             EEEEEEECCTTGGGSCCEEEECSC-----CCCTTBCTTSBBCCGGGCCC---------CCSSCCT-TCCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCCCeEEecCC-----CCCcccCCCCccchhhcCCcccccccccccccccCc-cccHHHHHHHHHHH
Confidence            357889999999999999988432     1268899999999999964              766 67899999999888


Q ss_pred             hCC
Q psy18020         76 FSA   78 (434)
Q Consensus        76 F~~   78 (434)
                      |.+
T Consensus       123 l~~  125 (161)
T d1pzva_         123 LTD  125 (161)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            854

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=97.12  E-value=0.00052  Score=55.25  Aligned_cols=66  Identities=24%  Similarity=0.395  Sum_probs=49.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHh
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAF   76 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F   76 (434)
                      |.|..|  -+.|=++++||+.||.|-.. |   .|.=+++|+.+|+|++..|. +|++ ..++..++..+...+
T Consensus        42 y~gg~f--~~~i~fp~~YP~~pP~v~F~-t---~~~~hpni~~~G~iCl~il~~~Wsp-~~ti~~vl~~i~~ll  108 (109)
T d2fo3a1          42 YANEVY--KLKIIFPDDYPLKPPIVYFL-Q---KPPKHTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISML  108 (109)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEEC-S---SCCCBTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHH
T ss_pred             hcCCCc--eEEEEeccccCCCCCeEEEE-e---ccccCceECCCCeEEeecccCCCCc-cCCHHHHHHHHHHHh
Confidence            445444  47778899999999998441 1   12225789999999998887 8977 788998888887654

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=97.08  E-value=0.00046  Score=59.51  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=52.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc--------------ccCCCCCHHHHH
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT--------------WTPQNSKLEGLI   69 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~--------------W~~~~s~L~~li   69 (434)
                      |.|..|  -+.|.+|++||+.||.|+....     .=+++|+.+|+|++..|..              |++ ..+|..++
T Consensus        48 y~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p-~~ti~~il  119 (164)
T d2ucza_          48 YADGVF--NAKLEFPKDYPLSPPKLTFTPS-----ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKIL  119 (164)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEESSC-----CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCT-TCCHHHHH
T ss_pred             ccCCee--EEEEecCCCCCCCCCeEEeecC-----ceeceEcCCCCeeeccccCccccccccccccccCCc-cccHHHHH
Confidence            444444  6788899999999999987432     1267899999999999864              554 77899999


Q ss_pred             HHHHHHhCC
Q psy18020         70 KTLASAFSA   78 (434)
Q Consensus        70 ~~l~~~F~~   78 (434)
                      ..+...|.+
T Consensus       120 ~~i~~ll~~  128 (164)
T d2ucza_         120 LSVMSMLSE  128 (164)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhC
Confidence            999888764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=96.99  E-value=0.00048  Score=58.54  Aligned_cols=67  Identities=25%  Similarity=0.433  Sum_probs=53.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc---cccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH---TWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~---~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|-++++||+.||.|+....     .-+++|| .+|+|++..|.   +|++ ..+|.+++..+...|.+
T Consensus        48 yegg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~~G~iC~~~l~~~~~W~p-~~tl~~vL~~I~~ll~~  118 (148)
T d1yrva1          48 WQGLVF--QLTIHFTSEYNYAPPVVKFITI-----PFHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN  118 (148)
T ss_dssp             TTTCEE--EEEEECCTTBTTBCCEEEESSC-----CCCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred             cCCCce--EEEEEeccccccCCceeeeccc-----cccCceecCcccccccccCchhhcCc-cccHHHHHHHHHHHHhC
Confidence            455555  4677889999999999988422     3357899 58999999884   7987 78899999999998863

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.79  E-value=0.0011  Score=56.91  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCc-CCCCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNV-DHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~v-d~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|+....     .-+++| +.+|.|++..|.+|..+..+|..++..+...|..
T Consensus        58 Y~gg~f--~~~i~fp~~YP~~pP~V~F~t~-----i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~  126 (161)
T d2f4za1          58 YEGGHF--TLDIVIPPDYPYNPPKMKFVTK-----IWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLAD  126 (161)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHS
T ss_pred             cCCCEE--EEEEeccCCCCCCCcEEEecCC-----CCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhC
Confidence            455555  6788999999999999987422     224555 5589999999877655689999999999988853

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=96.68  E-value=0.0016  Score=54.51  Aligned_cols=66  Identities=18%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceecccc--ccccCCCCCHHHHHHHHHHHhC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYL--HTWTPQNSKLEGLIKTLASAFS   77 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL--~~W~~~~s~L~~li~~l~~~F~   77 (434)
                      |.|..|  -+.|-++.+||+.||.|+....     .-.++|+. +|.|++.+|  .+|++ ..+|..++..+...+.
T Consensus        52 y~gg~f--~~~i~fp~~YP~~PP~v~f~t~-----i~HpnV~~~~G~icl~~l~~~~Wsp-~~ti~~IL~~i~~lL~  120 (136)
T d1jatb_          52 HENRIY--SLSIDCGPNYPDSPPKVTFISK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLLLDLRKEMA  120 (136)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHHHHHHHHHT
T ss_pred             hhcCEE--EEEEEecCCCCCCCCEEEEecc-----ccccccccCCCeEECCCCcccCcCc-cCcHHHHHHHHHHHHc
Confidence            444444  6899999999999999987431     23478986 599999987  47987 6889999999988774

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=96.66  E-value=0.0017  Score=54.92  Aligned_cols=68  Identities=18%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      |.|..|  -+.|.+|++||+.||.|+....     .-.++||. +|.|.+-.+.+|..+..+|.+++..+...|.+
T Consensus        46 y~gg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~  114 (149)
T d1fzya_          46 YEGGKF--VVDIEVPMEYPFKPPKMQFDTK-----VYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQS  114 (149)
T ss_dssp             TTTCEE--EEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred             CCCCce--eEEEEecCCcccCCcEEEecCC-----CcCCcccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhC
Confidence            444444  5889999999999999987432     23478887 66788888888655689999999999988853

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=96.41  E-value=0.00094  Score=57.32  Aligned_cols=66  Identities=20%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccc-cccCCCCCHHHHHHHHH-HHhC
Q psy18020          4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLH-TWTPQNSKLEGLIKTLA-SAFS   77 (434)
Q Consensus         4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~-~W~~~~s~L~~li~~l~-~~F~   77 (434)
                      |.|..|  -+.|.+|++||..||.|+.. |.    .-+++||. +|+|++..|. +|++ ..++..+|..++ ..|.
T Consensus        40 Y~gg~f--~~~i~fp~~YP~~pP~v~F~-t~----i~HPnI~~~~G~vcl~il~~~W~p-~~~i~~il~~~i~~ll~  108 (158)
T d1yf9a1          40 YEDGTW--MLHVQLPSDYPFKSPSIGFC-NR----ILHPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR  108 (158)
T ss_dssp             TTTCEE--EEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred             ccCcEE--EEEEECcccchhhceeEEec-CC----CCCCCCccCcccccccccccccCc-hHhhhhHHHHHHHHHhc
Confidence            344444  58999999999999999774 21    23578987 7999988877 7876 667777776544 4553

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=96.30  E-value=0.0035  Score=53.43  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc----ccccCCCCCHHHHHHHHHHHhCC
Q psy18020         10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL----HTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL----~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      .+-+.|.+|++||+.||.|+.. |      ++.|++.+|++.+-.|    ++|++ ..++..++..+...|..
T Consensus        49 ~f~~~i~fp~~YP~~pP~v~f~-t------~~~~~~~~g~~~~~~l~~~~~~Wsp-~~ti~~il~~i~~ll~~  113 (157)
T d2f4wa1          49 YYHGKLIFPREFPFKPPSIYMI-T------PNGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVE  113 (157)
T ss_dssp             EEEEEEECCTTTTSSCCEEEEC-S------CCSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEeccCCcCCCCCEEEee-C------CCcccCCCCCeeeeeccccCCCCCc-cCcHHHHHHHHHHHccC
Confidence            4578899999999999999773 2      4567777788765554    46987 78899999988887754

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0021  Score=55.17  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSALPP   81 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~~pP   81 (434)
                      +-+.|-++++||+.||.|.+.-.    |--.++|+.+|.|++..|+  +|++ ..++..++..+...+.+..|
T Consensus        68 ~~l~i~fp~~YP~~PP~v~f~t~----i~hpn~~~~~G~iCl~iL~~~~WsP-~~ti~~IL~~i~~ll~~~~p  135 (162)
T d1zuoa1          68 ILLNFSFKDNFPFDPPFVRVVLP----VLSGGYVLGGGALCMELLTKQGWSS-AYSIESVIMQINATLVKGKA  135 (162)
T ss_dssp             EEEEEECCTTTTSSCCEEEEEES----CEESTTBCGGGBBCCGGGSTTTCCT-TSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCchhhhcceEEEEEE----eeccccccCCceeecccccCCCCCC-cccHHHHHHHHHHHHcCCCC
Confidence            67889999999999999877321    1123568899999999995  4988 88999998888887765444

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=95.48  E-value=0.011  Score=49.29  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCc-eec---cccccccCCCCCHHHHHHHHHHHhCC
Q psy18020         11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGK-IYS---PYLHTWTPQNSKLEGLIKTLASAFSA   78 (434)
Q Consensus        11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~-~~~---pyL~~W~~~~s~L~~li~~l~~~F~~   78 (434)
                      .-+.|-++++||++||.|... |.    .-.++||.+|. +.+   ..|.+|++ ..++..++..+...+..
T Consensus        58 f~~~i~fp~~YP~~pP~v~F~-t~----i~HpnV~~~~g~~~~~~l~~l~~Wsp-~~ti~~iL~~i~slL~~  123 (139)
T d2a4da1          58 YSLKIECGPKYPEAPPFVRFV-TK----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVVLQELRRLMMS  123 (139)
T ss_dssp             EEEEEECCTTTTTSCCEEEES-BC----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCCCCCEEEEe-cC----cccccCcCCCCEEcceecCcccCCCc-cCcHHHHHHHHHHHHCC
Confidence            457888999999999998663 21    12478887754 433   34579987 78899999999887754

>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum) [TaxId: 3635]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin GH1
species: Cotton (Gossypium hirsutum) [TaxId: 3635]

Probab=91.09  E-value=0.037  Score=52.15  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-+++++.+....+.      ...+++||...+++  +..+....+.....|...+.++.++++.|.++|+
T Consensus        34 ~~ii~il~~rs~~qr~~i~~~Y~~~~gkdL~~~L~~elsG~f~~~l~~l~~~p~~~dA~~l~~A~kg~gtde~~LieIl~  113 (318)
T d1n00a_          34 GLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEIAC  113 (318)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCSSCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHhCchHHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhHhhHhh
Confidence            456677777778888887777766      45677788766666  3344466777888899999888888888888888


Q ss_pred             HhcCC
Q psy18020        351 VLTEK  355 (434)
Q Consensus       351 ~l~~k  355 (434)
                      ...+.
T Consensus       114 ~rs~~  118 (318)
T d1n00a_         114 TRSAN  118 (318)
T ss_dssp             SSCHH
T ss_pred             cCCcH
Confidence            76543

>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.055  Score=50.96  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        280 AVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILAV  351 (434)
Q Consensus       280 al~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~  351 (434)
                      .|.+.|..+-.+++.++....++      ...++.|+...+++  +..+....+.....|...+++..++.+.|.++++.
T Consensus        35 ~ii~IL~~rs~~qr~~i~~~Y~~~yg~~L~~~lk~e~sG~f~~~l~~l~~~p~~~~A~~l~~A~kG~gt~e~~LieIl~t  114 (319)
T d1w7ba_          35 TIVNILTNRSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICS  114 (319)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHTCSSSCCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHhCccHHHHHHHHhcCHHHHHHHHHHHHhhcCCCchHHHhhheec
Confidence            45566666667788877777776      44567777655555  34444667777888888888888888888888887


Q ss_pred             hcCC
Q psy18020        352 LTEK  355 (434)
Q Consensus       352 l~~k  355 (434)
                      ..+.
T Consensus       115 rs~~  118 (319)
T d1w7ba_         115 RTNQ  118 (319)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            7543

>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.55  E-value=0.039  Score=52.55  Aligned_cols=137  Identities=21%  Similarity=0.235  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      ++|.+.|..+-+++++++....+.      ...++++|....+++  .......+.....|...++++.++++.|.++++
T Consensus        62 ~~ii~IL~~rs~~Qr~~I~~~Y~~~ygkdL~~~Lk~elsG~f~~~l~~l~~~p~~~dA~~l~~A~kG~gt~e~~LieIl~  141 (343)
T d1hm6a_          62 ATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEILA  141 (343)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhCCcHHHHHHHHcCCcHHHHHHHHcCCHhHHHHHHHHHHHhCCCchhHhHhhhee
Confidence            457778888888888888777776      456778887666663  445567778888999999988888888988888


Q ss_pred             HhcCCCC------------CCccccccc-cchHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcC-CCCHHHH
Q psy18020        351 VLTEKTE------------VDVDEAVTT-TAPIYKQILNTFTE-----------EAATEDTIYYMGEALRRG-VIDLEVY  405 (434)
Q Consensus       351 ~l~~k~~------------~diDe~i~~-~~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g-~I~ld~f  405 (434)
                      ...+.+-            -++.+.|.. .+--+++++...++           +.|-+|+- .|.+|.... -.|-+.|
T Consensus       142 trs~~ei~~Ik~aY~~~y~~~Le~dI~~e~sG~~~klll~ll~~~R~e~~~vd~~~a~~DA~-~L~~A~e~k~g~De~~~  220 (343)
T d1hm6a_         142 SRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDAR-ALYEAGERRKGTDLNVF  220 (343)
T ss_dssp             HSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSCCHHHHHHHHH-HHHHHTTTSSSCCHHHH
T ss_pred             eCCHHHHHHHHHHHHHhcCCCHHHHhhhccchhHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHHHHhccccCCCHHHH
Confidence            7754322            133332211 12224555544433           23344544 356666533 3466666


Q ss_pred             HHHHHHHHHHH
Q psy18020        406 LKQVRSLSRKQ  416 (434)
Q Consensus       406 lK~vR~LaReQ  416 (434)
                      ++-.-.-+..|
T Consensus       221 i~Il~~RS~~~  231 (343)
T d1hm6a_         221 ITILTTRSYPH  231 (343)
T ss_dssp             HHHHHHSCHHH
T ss_pred             hHHHhcCCHHH
Confidence            66554444444

>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin V
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.44  E-value=0.22  Score=46.57  Aligned_cols=76  Identities=24%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-.++++++....++      ...++++|....++  +..+....+.....|...++++.++.+.|.++++
T Consensus        33 ~~ii~Il~~rs~~qr~~i~~~Y~~~~g~~L~~~lk~e~sG~~~~~l~~l~~~p~~~dA~~l~~A~kg~gtde~~Lieil~  112 (318)
T d2ie7a1          33 DSILNLLTARSNAQRQQIAEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIA  112 (318)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHCCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHCccHHHHHHHHhChHHHHHHHHHcCCHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            456666777777888877777766      44577777765555  3444456677888899999988888888888888


Q ss_pred             HhcC
Q psy18020        351 VLTE  354 (434)
Q Consensus       351 ~l~~  354 (434)
                      ...+
T Consensus       113 trs~  116 (318)
T d2ie7a1         113 SRTP  116 (318)
T ss_dssp             HSCH
T ss_pred             hCCH
Confidence            7754

>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin VI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.32  E-value=0.089  Score=49.94  Aligned_cols=137  Identities=18%  Similarity=0.186  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-+++++.+....+.      ...++.+|....++  +..+....+.....|...++++.+++..|.++|+
T Consensus        32 ~~li~IL~~rs~~qr~~i~~~Y~~~ygkdL~~~Lk~elsG~f~~~l~~l~~~p~~~dA~~l~~A~kG~gtde~~LieIL~  111 (341)
T d1avca1          32 EAIINLITSRSNKQRQEICQNYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYADAKEIKDAISGIGTDEKCLIEILA  111 (341)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHcCchHHHHHHHHhcCHHHHHHHHHHHHHhCCCcchhhhhhhhh
Confidence            456667777777788777777665      45677777666655  3444566788889999999998888888988888


Q ss_pred             HhcCCCC------------CCcccccccc-chHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcC-CCCHHHH
Q psy18020        351 VLTEKTE------------VDVDEAVTTT-APIYKQILNTFTE-----------EAATEDTIYYMGEALRRG-VIDLEVY  405 (434)
Q Consensus       351 ~l~~k~~------------~diDe~i~~~-~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g-~I~ld~f  405 (434)
                      ...+.+-            -++.+.|..+ +--++.|+-.+.+           +.|-+|+- .|.+|+..+ -.|-+.|
T Consensus       112 trs~~ei~~ik~aY~~~y~~~L~~dI~~e~sg~~~~ll~~ll~~~R~e~~~vd~~~a~~DA~-~L~~A~~~k~gtde~~~  190 (341)
T d1avca1         112 SRTNEQIHQLVAAYKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQ-DLYEAGELKWGTDEAQF  190 (341)
T ss_dssp             HSCHHHHHHHHHHHHHHHCCCHHHHHHTTCCTHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-HHHHHTTTSSSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCcHHHHHhhcccHHHHHHHHHHHhcCCCCCCCCCHHHhHHHHH-HHHHHhhccCCCchhhh
Confidence            7654322            1333333222 2235555555554           44455644 577777542 3577888


Q ss_pred             HHHHHHHHHHH
Q psy18020        406 LKQVRSLSRKQ  416 (434)
Q Consensus       406 lK~vR~LaReQ  416 (434)
                      ++-.-.-+.+|
T Consensus       191 i~IL~~rs~~h  201 (341)
T d1avca1         191 IYILGNRSKQH  201 (341)
T ss_dssp             HHHHHHSCHHH
T ss_pred             eecccCCCHHH
Confidence            77655555544

>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin XII
species: Hydra vulgaris [TaxId: 6087]

Probab=84.21  E-value=0.19  Score=46.98  Aligned_cols=76  Identities=16%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      ..|.+.|..+-.++++.+....+.      ...++.++...+++  +.-.....+.....|...++++.++++.|.++++
T Consensus        33 ~~li~il~~rs~~qr~~i~~~Y~~~yg~~L~~~Lk~e~sG~~~~~l~~l~~~p~~~dA~~l~~A~kG~gtde~~LieIl~  112 (315)
T d1dm5a_          33 KSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILC  112 (315)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHHSSSCCHHHHHHHHS
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHhCccHHHHHHHHhcChHHHHHHHHHHHhcCCCcchHHHhhhhh
Confidence            456677777878888888777776      35677777766655  3334456777888999999988888888888877


Q ss_pred             HhcC
Q psy18020        351 VLTE  354 (434)
Q Consensus       351 ~l~~  354 (434)
                      ...+
T Consensus       113 ~rs~  116 (315)
T d1dm5a_         113 TQSN  116 (315)
T ss_dssp             SCCH
T ss_pred             cCCH
Confidence            6643

>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin III
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.23  Score=46.54  Aligned_cols=137  Identities=15%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-.++++.+....++      ...++++|....++  +.......+.....|...++++.++++.|.++++
T Consensus        39 ~~ii~IL~~rs~~qr~~I~~~Y~~~ygkdL~~~lk~elsG~f~~~l~~l~~~p~~~dA~~l~~A~kg~gtde~~Lieil~  118 (323)
T d1axna_          39 KMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILT  118 (323)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHCSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHhCchHHHHHHHHcCCHHHHHHHHHHHHHhccCCchHHhhhhhh
Confidence            345666666667788777777776      45677777766555  3444467888889999999888888888888888


Q ss_pred             HhcCCCCC------------Ccccccccc-chHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhc-CCCCHHHH
Q psy18020        351 VLTEKTEV------------DVDEAVTTT-APIYKQILNTFTE-----------EAATEDTIYYMGEALRR-GVIDLEVY  405 (434)
Q Consensus       351 ~l~~k~~~------------diDe~i~~~-~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~-g~I~ld~f  405 (434)
                      ...+.+-.            ++.+.|..+ +--++.++-...+           ..|-+|+ ..|.+|+.. ...|-++|
T Consensus       119 ~rs~~e~~~ik~aY~~~y~~~L~~di~~e~sg~~~kll~~ll~~~R~e~~~vd~~~~~~Da-~~L~~a~~~~~g~de~~~  197 (323)
T d1axna_         119 TRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDA-QILYKAGENRWGTDEDKF  197 (323)
T ss_dssp             HSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCSCCCSCCCHHHHHHHH-HHHHHHTTTSSSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhhcCCcHHHHhhhhcChHHHHHHHHHHhcCcCCCCCCChHHHHHHH-HHHHHHHhccCCCchhhe
Confidence            77543221            333333211 1124455544433           2233343 446677764 34688888


Q ss_pred             HHHHHHHHHHH
Q psy18020        406 LKQVRSLSRKQ  416 (434)
Q Consensus       406 lK~vR~LaReQ  416 (434)
                      ++-.-.-+..|
T Consensus       198 i~Il~~rs~~q  208 (323)
T d1axna_         198 TEILCLRSFPQ  208 (323)
T ss_dssp             HHHHHHSCHHH
T ss_pred             ehhHhcCCHHH
Confidence            76655544444

>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Integral outer membrane protein TolC, efflux pump component
species: Escherichia coli [TaxId: 562]

Probab=81.29  E-value=15  Score=33.32  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=29.9

Q ss_pred             CCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHH
Q psy18020        355 KTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYL  406 (434)
Q Consensus       355 k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~fl  406 (434)
                      .+..++-+++.+..-+.+.-.+++.-....-=+++-|.+++  |.++.+.-.
T Consensus       364 ~G~~s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~--G~L~~~~~~  413 (428)
T d1ek9a_         364 VGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSAL--GTLNEQDLL  413 (428)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            46677778776666666555555554444444555555554  777765544

>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS28 N-terminal domain
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.09  E-value=1.9  Score=33.36  Aligned_cols=46  Identities=22%  Similarity=0.198  Sum_probs=42.1

Q ss_pred             chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020        368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS  413 (434)
Q Consensus       368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La  413 (434)
                      ++..+++||..|+-.||==||.+|.||.-++.|+-+.|-..+..|=
T Consensus        16 t~~eRe~yd~LAelysII~tLe~LEkAyikD~It~~eYt~~c~rLl   61 (104)
T d2f6mb1          16 TSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL   61 (104)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999987776653

>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Annexin
superfamily: Annexin
family: Annexin
domain: Annexin IV
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.08  E-value=0.24  Score=46.02  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020        279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA  350 (434)
Q Consensus       279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~  350 (434)
                      .+|.+.|..+-..++..+....++      ...++++|....++  +..+....+.....|...+++..++.+.|.++|+
T Consensus        25 ~~ii~IL~~rs~~qr~~i~~~Y~~~yg~dL~~~L~~e~sG~~~~~l~~l~~~p~~~dA~~l~~A~kG~gtde~~LieIl~  104 (309)
T d1i4aa_          25 DAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSGNFEQVILGMMTPTVLYDVQELRKAMKGAGTDEGCLIEILA  104 (309)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHHHhcCCCCchHHhhhhhe
Confidence            345566666667777777777766      44677777655555  3344466777888899999888888888888888


Q ss_pred             HhcCCCCC------------Ccccccccc-chHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcC-CCCHHHH
Q psy18020        351 VLTEKTEV------------DVDEAVTTT-APIYKQILNTFTE-----------EAATEDTIYYMGEALRRG-VIDLEVY  405 (434)
Q Consensus       351 ~l~~k~~~------------diDe~i~~~-~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g-~I~ld~f  405 (434)
                      ...+.+-.            ++.+.|..+ +-.+++++...+.           +.|-+|+- .|.+|+..+ -.|-++|
T Consensus       105 trs~~e~~~ik~aY~~~~~~sL~~di~~~~sg~~~~ll~~ll~~~R~e~~~vd~~~a~~DA~-~L~~A~~~~~g~De~~~  183 (309)
T d1i4aa_         105 SRTPEEIRRINQTYQLQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDESNYLDDALMRQDAQ-DLYEAGEKKWGTDEVKF  183 (309)
T ss_dssp             HSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCSCCSCCCCHHHHHHHHH-HHHHHTTCSSCCCHHHH
T ss_pred             eCCHHHHHHHHHHHHHhcCCCHHHHhhhCCcHhHHHHHHHHHhcccCCCCCcCHHHHHHHHH-HHHHHHhCcCCCChhHe
Confidence            76543221            333333221 1233444433332           23445544 466666543 3477777


Q ss_pred             HHHHHHHHHHHH
Q psy18020        406 LKQVRSLSRKQF  417 (434)
Q Consensus       406 lK~vR~LaReQF  417 (434)
                      ++-.-.-+.+|+
T Consensus       184 i~Il~~rs~~ql  195 (309)
T d1i4aa_         184 LTVLCSRNRNHL  195 (309)
T ss_dssp             HHHHHHSCHHHH
T ss_pred             eeeeecCCHHHH
Confidence            766555555554