Psyllid ID: psy18027

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLHLR
Secondary Structure (PSIPRED)
cHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEccccHHHHHccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHcccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEccHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEEEEcHHHcc
Coil and Loop (DISEMBL)
MREGLLSVakspmnrvrlRNNFVRSYACMCIAQYTlgigdrhlentlvctktgrcvgidfgysfgvatqllpipelmpfrltphilavnepygsqgkRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTamshqpkmkepIILQEILTLLHLR
Flexible Loop (DISEMBL)
mregllsvakspmnrvrLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLHLR
Low Complexity Region (SEG)
MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLHLR
Disordered region (IsUnstruct)
**************RVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLH**
Disordered Region (DISOPRED)
MREGLL*VAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQ*******************EILTLLHLR
Disordered Region (DISEMBL)
MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLHLR
Disordered Region (DISPRO)
MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLL*L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVGVYNQKILEQKQYLWFIQINVTAMSHQPKMKEPIILQEILTLLHLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q54UC0	4299	DNA-dependent protein kin	yes	N/A	0.581	0.022	0.5	4e-24
P97313	4128	DNA-dependent protein kin	yes	N/A	0.909	0.036	0.372	2e-22
Q8WN22	4144	DNA-dependent protein kin	yes	N/A	0.909	0.036	0.372	2e-22
Q8QGX4	4134	DNA-dependent protein kin	yes	N/A	0.581	0.023	0.479	7e-22
Q9DEI1	4146	DNA-dependent protein kin	N/A	N/A	0.581	0.023	0.447	9e-22
P78527	4128	DNA-dependent protein kin	yes	N/A	0.909	0.036	0.360	3e-21
P38111	2368	Serine/threonine-protein	yes	N/A	0.515	0.035	0.418	2e-14
Q6FX42	2379	Serine/threonine-protein	yes	N/A	0.575	0.039	0.406	4e-14
Q75DB8	2324	Serine/threonine-protein	yes	N/A	0.551	0.039	0.413	1e-13
Q6CT34	2287	Serine/threonine-protein	yes	N/A	0.515	0.037	0.418	4e-13

>sp|Q54UC0|PRKDC_DICDI DNA-dependent protein kinase catalytic subunit OS=Dictyostelium discoideum GN=dnapkcs PE=3 SV=2

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 65/96 (67%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++ G+ S++ SP + + +RN+F RS A   +  Y +GIGDRHLEN L+  + GR +GIDF
Sbjct: 4056 LQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDF 4115

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ LPIPELMPFRLT    +   P  S G
Sbjct: 4116 GHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVG 4151

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Is recruited to DNA ends by the Ku70/Ku80 heterodimer and is involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination (By similarity). This activity is only apparent when DNA damage is administered in G1 phase of the cell cycle. Required for efficient signaling of DNA double stranded breaks via phosphorylation of H2AX during G1.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic subunit OS=Mus musculus GN=Prkdc PE=1 SV=3

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 11/161 (6%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++   + ++ SP   + LR++F  S+A +CI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct: 3883 LKRAFVKMSTSPEAFLALRSHFASSHALLCISHWLLGIGDRHLNNFMVAMETGSVIGIDF 3942

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWV-----RHLNEIDTLLSKSF 115
            G++FG ATQ LP+PELMPFRLT   +++  P    G    V     R       LL+ + 
Sbjct: 3943 GHAFGSATQFLPVPELMPFRLTRQFVSLMLPMKETGLMCTVMVHALRAFRSCAGLLTDTM 4002

Query: 116  LLSVG--VYNQKILEQ----KQYLWFIQINVTAMSHQPKMK 150
             + V    ++ K  EQ    K   W  +INVT  +  P+ K
Sbjct: 4003 EIFVKEPSFDWKSFEQTMLRKGGSWIQEINVTEKNWYPQHK 4043

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, C1D, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 11/161 (6%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++   L ++  P   + LR++F  S+A MCI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct: 3899 LKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDF 3958

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWV-----RHLNEIDTLLSKSF 115
            G++FG ATQ LP+PELMPFRLT   + +  P    G    +     R       LL+ + 
Sbjct: 3959 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGVVYSIMVHALRAFRSHSDLLTNTM 4018

Query: 116  LLSVG--VYNQKILEQKQY----LWFIQINVTAMSHQPKMK 150
             + V    ++ K  EQK       W  +INVT  +  P+ K
Sbjct: 4019 DVFVKEPSFDWKNFEQKMLKKGGSWIQEINVTEKNWYPRQK 4059

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, C1D, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Canis familiaris (taxid: 9615)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8QGX4|PRKDC_CHICK DNA-dependent protein kinase catalytic subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1

 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 65/96 (67%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R   + ++ SP   + LR++FV S+A MC++ + LGIGDRHL N ++  +TG  VGIDF
Sbjct: 3889 LRRAFVKMSTSPEAFLALRSHFVSSHALMCVSHWILGIGDRHLSNFMINKETGGMVGIDF 3948

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ LP+PELMPFRLT   + +  P    G
Sbjct: 3949 GHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWG 3984

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9DEI1|PRKDC_XENLA DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis GN=prkdc PE=2 SV=1

 Score =  102 bits (255), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 66/96 (68%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R   + ++ +P   + LR++F RS+A +C++ + +GIGDRHL N ++  +TG  +GIDF
Sbjct: 3901 LRRAFVKMSTTPEAFLSLRSHFARSHALLCVSHWIVGIGDRHLSNFMINMETGGMIGIDF 3960

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ LP+PELMPFRLT  I+ +  P    G
Sbjct: 3961 GHAFGTATQFLPVPELMPFRLTRQIVNLMLPMKDSG 3996

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 11/161 (6%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++   + ++ SP   + LR++F  S+A +CI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct: 3883 LKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDF 3942

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWV-----RHLNEIDTLLSKSF 115
            G++FG ATQ LP+PELMPFRLT   + +  P    G    +     R       LL+ + 
Sbjct: 3943 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTM 4002

Query: 116  LLSVG--VYNQKILEQKQY----LWFIQINVTAMSHQPKMK 150
             + V    ++ K  EQK       W  +INV   +  P+ K
Sbjct: 4003 DVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQK 4043

Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P38111|ATR_YEAST Serine/threonine-protein kinase MEC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEC1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 11   SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQL 70
             P+N    RN + RSYA M +  + LG+GDRH EN L+  +TG+ + +DF   F    + 
Sbjct: 2195 DPINWFNARNTYARSYAVMAMVGHILGLGDRHCENILLDIQTGKVLHVDFDCLFEKGKR- 2253

Query: 71   LPIPELMPFRLTPHILAVNEPYGSQG 96
            LP+PE++PFRLTP++L      G++G
Sbjct: 2254 LPVPEIVPFRLTPNLLDALGIIGTEG 2279

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited in complex with protein LCD1 by the single-strand-binding protein complex RPA to DNA lesions in order to initiate the DNA repair by homologous recombination, after the MRX-complex and TEL1 are displaced. Phosphorylates LCD1 and RPA2, a subunit of RPA, involved in DNA replication, repair and recombination. Phosphorylates RAD9, CHK1 and RAD53, which leads to the activation of the CHK1 and RAD53 kinases involved in DNA damage repair cascade. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Phosphorylates also SLX4 and RTT107 which are proteins involved in genome stability. Required for cell growth and meiotic recombination.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6FX42|ATR_CANGA Serine/threonine-protein kinase MEC1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MEC1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            + E  L     P+N  R RN + RSYA M +  Y LG+GDRH EN L+  KTG+ + +DF
Sbjct: 2196 LHEWFLENFPDPINWYRARNLYSRSYAVMAMVGYILGLGDRHCENILLDIKTGKVLHVDF 2255

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
               F      LP+PE++PFRLT ++       G++G
Sbjct: 2256 DCLFEKGEN-LPVPEIVPFRLTQNLQDALGILGTEG 2290

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited to DNA lesions in order to initiates the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombination.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q75DB8|ATR_ASHGO Serine/threonine-protein kinase MEC1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MEC1 PE=3 SV=3

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 5    LLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSF 64
             L    +P+     RN FVRSYA M +  + LG+GDRHLEN L+  +TG+ + +DF   F
Sbjct: 2145 FLETFPNPIRWYNARNAFVRSYAVMAMVGHILGLGDRHLENILLDLQTGKVLHVDFDCLF 2204

Query: 65   GVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
                + LP+PE++PFRLT +I       G++G
Sbjct: 2205 EKG-KTLPVPEIVPFRLTQNIQDAFGVTGTEG 2235

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited to DNA lesions in order to initiates the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombination.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6CT34|ATR_KLULA Serine/threonine-protein kinase MEC1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MEC1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 11   SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQL 70
             P+     RN FVRSY+ M +  + LG+GDRH EN L+   TGR + +DF   F    + 
Sbjct: 2114 DPITWYNARNGFVRSYSVMAMVGHILGLGDRHCENILLDVLTGRVLHVDFDCLFEKGKK- 2172

Query: 71   LPIPELMPFRLTPHILAVNEPYGSQG 96
            LP+PE++PFRLT +I       G++G
Sbjct: 2173 LPVPEIVPFRLTQNITDAFGIIGTEG 2198

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited to DNA lesions in order to initiates the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombination.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
270002715	3670	hypothetical protein TcasGA2_TC016161 [T	0.581	0.026	0.520	1e-26
189234155	2349	PREDICTED: similar to protein kinase, DN	0.581	0.040	0.520	1e-26
390355668	1974	PREDICTED: DNA-dependent protein kinase	0.581	0.048	0.552	1e-22
390355670	1675	PREDICTED: DNA-dependent protein kinase	0.521	0.051	0.593	1e-22
111226581	4299	DNA-dependent protein kinase subunit [Di	0.581	0.022	0.5	2e-22
156364489	1860	predicted protein [Nematostella vectensi	0.496	0.044	0.585	5e-22
449662617	3487	PREDICTED: DNA-dependent protein kinase	0.521	0.024	0.569	1e-21
349602831	287	DNA-dependent protein kinase catalytic s	0.903	0.519	0.376	1e-21
255522855	4134	DNA-dependent protein kinase catalytic s	0.903	0.036	0.376	1e-21
330796917	4168	DNA-dependent protein kinase subunit [Di	0.581	0.023	0.479	2e-21

>gi|270002715|gb|EEZ99162.1| hypothetical protein TcasGA2_TC016161 [Tribolium castaneum]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 71/96 (73%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             R   L ++ +      LRNNF++SYA MC + + +G+GDRHL N+LVC  +G+ +GIDF
Sbjct: 3431 FRSTFLKLSSNTEGFFALRNNFIKSYAIMCASHWIVGVGDRHLSNSLVCLNSGKVLGIDF 3490

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ+LP+PEL+PFRLTPHI+ + EP G+ G
Sbjct: 3491 GHAFGTATQILPVPELVPFRLTPHIVNLMEPLGATG 3526

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234155|ref|XP_970757.2| PREDICTED: similar to protein kinase, DNA activated, catalytic polypeptide [Tribolium castaneum]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 71/96 (73%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             R   L ++ +      LRNNF++SYA MC + + +G+GDRHL N+LVC  +G+ +GIDF
Sbjct: 2110 FRSTFLKLSSNTEGFFALRNNFIKSYAIMCASHWIVGVGDRHLSNSLVCLNSGKVLGIDF 2169

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ+LP+PEL+PFRLTPHI+ + EP G+ G
Sbjct: 2170 GHAFGTATQILPVPELVPFRLTPHIVNLMEPLGATG 2205

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390355668|ref|XP_781813.3| PREDICTED: DNA-dependent protein kinase catalytic subunit-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 66/96 (68%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R G + ++ SP   + LR +F RS+A +CI QY LGIGDRHL N LV  +TG  VGIDF
Sbjct: 1727 LRRGFMQLSASPEAFLTLRAHFARSHAVLCICQYILGIGDRHLSNFLVSLETGGMVGIDF 1786

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G+SFG ATQ LPIPEL+PFRLT  I+ +  P    G
Sbjct: 1787 GHSFGSATQFLPIPELIPFRLTRQIINLMLPMKIDG 1822

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390355670|ref|XP_003728605.1| PREDICTED: DNA-dependent protein kinase catalytic subunit-like isoform 1 [Strongylocentrotus purpuratus]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 63/86 (73%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R G + ++ SP   + LR +F RS+A +CI QY LGIGDRHL N LV  +TG  VGIDF
Sbjct: 1428 LRRGFMQLSASPEAFLTLRAHFARSHAVLCICQYILGIGDRHLSNFLVSLETGGMVGIDF 1487

Query: 61   GYSFGVATQLLPIPELMPFRLTPHIL 86
            G+SFG ATQ LPIPEL+PFRLT  I+
Sbjct: 1488 GHSFGSATQFLPIPELIPFRLTRQII 1513

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|111226581|ref|XP_640856.2| DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] gi|122086252|sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gi|90970659|gb|EAL66880.2| DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 65/96 (67%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++ G+ S++ SP + + +RN+F RS A   +  Y +GIGDRHLEN L+  + GR +GIDF
Sbjct: 4056 LQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDF 4115

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ LPIPELMPFRLT    +   P  S G
Sbjct: 4116 GHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVG 4151

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|156364489|ref|XP_001626380.1| predicted protein [Nematostella vectensis] gi|156213254|gb|EDO34280.1| predicted protein [Nematostella vectensis]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R     +A SP   + LR +F R++AC+CI QY LGIGDRHL N LV  +TG  +GIDF
Sbjct: 1616 LRRAFQQLAASPEAYLTLRTHFARTHACICICQYVLGIGDRHLSNFLVDMRTGGLIGIDF 1675

Query: 61   GYSFGVATQLLPIPELMPFRLT 82
            G+SFG ATQ LP+PEL+PFRLT
Sbjct: 1676 GHSFGSATQFLPVPELVPFRLT 1697

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449662617|ref|XP_004205582.1| PREDICTED: DNA-dependent protein kinase catalytic subunit-like [Hydra magnipapillata]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 61/86 (70%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            +R     +A S      LR NF++S++C+CIA Y LGIGDRHL N L+  KTG  VGIDF
Sbjct: 3237 LRRAFEKLALSSEAYFVLRKNFIQSHSCLCIAHYILGIGDRHLNNMLIDNKTGGVVGIDF 3296

Query: 61   GYSFGVATQLLPIPELMPFRLTPHIL 86
            GY+FG+ATQLL  PEL+PFRLT  +L
Sbjct: 3297 GYAFGIATQLLKYPELVPFRLTQQML 3322

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|349602831|gb|AEP98847.1| DNA-dependent protein kinase catalytic subunit-like protein, partial [Equus caballus]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 13/162 (8%)

Query: 1   MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
           ++   + ++ SP   + LR++F RS+A +CI+ + LGIGDRHL N LV  +TG  +GIDF
Sbjct: 42  LKRAFVKMSTSPEAFLTLRSHFARSHALICISHWILGIGDRHLNNFLVSMETGGVIGIDF 101

Query: 61  GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVG 120
           G++FG ATQ LP+PELMPFRLT   + +  P    G  ++   ++ +    S+S LL+  
Sbjct: 102 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGV-MYSIMVHALRAFRSQSNLLANT 160

Query: 121 V--------YNQKILEQKQY----LWFIQINVTAMSHQPKMK 150
           +        ++ K  EQK       W  +INVT  +  P+ K
Sbjct: 161 MDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVTEKNWYPRQK 202

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|255522855|ref|NP_001157330.1| DNA-dependent protein kinase catalytic subunit [Equus caballus]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 13/162 (8%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++   + ++ SP   + LR++F RS+A +CI+ + LGIGDRHL N LV  +TG  +GIDF
Sbjct: 3889 LKRAFVKMSTSPEAFLTLRSHFARSHALICISHWILGIGDRHLNNFLVSMETGGVIGIDF 3948

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLSVG 120
            G++FG ATQ LP+PELMPFRLT   + +  P    G  ++   ++ +    S+S LL+  
Sbjct: 3949 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETG-VMYSIMVHALRAFRSQSNLLANT 4007

Query: 121  V--------YNQKILEQKQY----LWFIQINVTAMSHQPKMK 150
            +        ++ K  EQK       W  +INVT  +  P+ K
Sbjct: 4008 MDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVTEKNWYPRQK 4049

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|330796917|ref|XP_003286510.1| DNA-dependent protein kinase subunit [Dictyostelium purpureum] gi|325083491|gb|EGC36942.1| DNA-dependent protein kinase subunit [Dictyostelium purpureum]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 64/96 (66%)

Query: 1    MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
            ++ G+ +++ SP + + +RN+F RS A   +  Y +GIGDRHLEN L+  + G  +GIDF
Sbjct: 3925 LQNGIWALSSSPESYLFIRNSFARSLATFSVCSYVIGIGDRHLENFLISQRDGTLIGIDF 3984

Query: 61   GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            G++FG ATQ LPIPELMPFRLT    +   P  S G
Sbjct: 3985 GHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVG 4020

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
DICTYBASE|DDB_G0281167	4299	dnapkcs "DNA-dependent protein	0.581	0.022	0.5	5.1e-20
UNIPROTKB|F1Q3H1	4135	PRKDC "DNA-dependent protein k	0.903	0.036	0.382	2.7e-19
UNIPROTKB|Q8WN22	4144	PRKDC "DNA-dependent protein k	0.903	0.035	0.382	2.7e-19
MGI|MGI:104779	4128	Prkdc "protein kinase, DNA act	0.909	0.036	0.372	5.6e-19
UNIPROTKB|F1NQD1	4134	PRKDC "DNA-dependent protein k	0.957	0.038	0.360	7.2e-19
UNIPROTKB|F1NRC7	4139	PRKDC "DNA-dependent protein k	0.957	0.038	0.360	7.2e-19
UNIPROTKB|Q8QGX4	4134	PRKDC "DNA-dependent protein k	0.957	0.038	0.355	9.2e-19
UNIPROTKB|E7EUY0	4096	PRKDC "DNA-dependent protein k	0.909	0.036	0.366	2.4e-18
UNIPROTKB|P78527	4128	PRKDC "DNA-dependent protein k	0.909	0.036	0.366	2.4e-18
UNIPROTKB|Q9DEI1	4146	prkdc "DNA-dependent protein k	0.581	0.023	0.447	3.1e-18

DICTYBASE|DDB_G0281167 dnapkcs "DNA-dependent protein kinase catalytic subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 257 (95.5 bits), Expect = 5.1e-20, P = 5.1e-20
 Identities = 48/96 (50%), Positives = 65/96 (67%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++ G+ S++ SP + + +RN+F RS A   +  Y +GIGDRHLEN L+  + GR +GIDF
Sbjct:  4056 LQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDF 4115

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
             G++FG ATQ LPIPELMPFRLT    +   P  S G
Sbjct:  4116 GHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVG 4151

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IMP

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0006975 "DNA damage induced protein phosphorylation" evidence=IMP

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1Q3H1 PRKDC "DNA-dependent protein kinase catalytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 62/162 (38%), Positives = 91/162 (56%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++   L ++  P   + LR++F  S+A MCI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct:  3890 LKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDF 3949

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLS-- 118
             G++FG ATQ LP+PELMPFRLT   + +  P    G  ++   ++ +    S S LL+  
Sbjct:  3950 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGV-VYSIMVHALRAFRSHSDLLTNT 4008

Query:   119 --VGV----YNQKILEQKQYL----WFIQINVTAMSHQPKMK 150
               V V    ++ K  EQK       W  +INVT  +  P+ K
Sbjct:  4009 MDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVTEKNWYPRQK 4050

GO:0005524 "ATP binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q8WN22 PRKDC "DNA-dependent protein kinase catalytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 62/162 (38%), Positives = 91/162 (56%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++   L ++  P   + LR++F  S+A MCI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct:  3899 LKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDF 3958

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFLLS-- 118
             G++FG ATQ LP+PELMPFRLT   + +  P    G  ++   ++ +    S S LL+  
Sbjct:  3959 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGV-VYSIMVHALRAFRSHSDLLTNT 4017

Query:   119 --VGV----YNQKILEQKQYL----WFIQINVTAMSHQPKMK 150
               V V    ++ K  EQK       W  +INVT  +  P+ K
Sbjct:  4018 MDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVTEKNWYPRQK 4059

GO:0070419 "nonhomologous end joining complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

MGI|MGI:104779 Prkdc "protein kinase, DNA activated, catalytic polypeptide" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 60/161 (37%), Positives = 89/161 (55%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++   + ++ SP   + LR++F  S+A +CI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct:  3883 LKRAFVKMSTSPEAFLALRSHFASSHALLCISHWLLGIGDRHLNNFMVAMETGSVIGIDF 3942

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKRLWV-----RHLNEIDTLLSKSF 115
             G++FG ATQ LP+PELMPFRLT   +++  P    G    V     R       LL+ + 
Sbjct:  3943 GHAFGSATQFLPVPELMPFRLTRQFVSLMLPMKETGLMCTVMVHALRAFRSCAGLLTDTM 4002

Query:   116 LLSVGV--YNQKILEQ----KQYLWFIQINVTAMSHQPKMK 150
              + V    ++ K  EQ    K   W  +INVT  +  P+ K
Sbjct:  4003 EIFVKEPSFDWKSFEQTMLRKGGSWIQEINVTEKNWYPQHK 4043

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IMP

GO:0001756 "somitogenesis" evidence=IGI

GO:0002326 "B cell lineage commitment" evidence=IMP

GO:0002328 "pro-B cell differentiation" evidence=IMP

GO:0002360 "T cell lineage commitment" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004677 "DNA-dependent protein kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=ISO

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007420 "brain development" evidence=IGI

GO:0007507 "heart development" evidence=IGI

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010332 "response to gamma radiation" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0019899 "enzyme binding" evidence=IPI

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0031648 "protein destabilization" evidence=IDA

GO:0032869 "cellular response to insulin stimulus" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IMP

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IMP

GO:0033153 "T cell receptor V(D)J recombination" evidence=IMP

GO:0035234 "germ cell programmed cell death" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0070419 "nonhomologous end joining complex" evidence=ISO

UNIPROTKB|F1NQD1 PRKDC "DNA-dependent protein kinase catalytic subunit" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 61/169 (36%), Positives = 92/169 (54%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             +R   + ++ SP   + LR++FV S+A MCI+ + LGIGDRHL N ++  +TG  VGIDF
Sbjct:  3889 LRRAFVKMSTSPEAFLALRSHFVSSHALMCISHWILGIGDRHLSNFMINKETGGMVGIDF 3948

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGK--RLWVRHLN----EIDTLLSK- 113
             G++FG ATQ LP+PELMPFRLT   + +  P    G    + V  L     + D L+S  
Sbjct:  3949 GHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTM 4008

Query:   114 SFLLSVGVYNQKILEQKQY----LWFIQINVTAMSHQPKMKEPIILQEI 158
                +     + K  EQ+Q      W  +IN   ++  P  K   + +++
Sbjct:  4009 DVFVKEPSLDWKNFEQRQLKKGGTWIKEINTAEVNWYPLQKVSYVKRKL 4057

GO:0003677 "DNA binding" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NRC7 PRKDC "DNA-dependent protein kinase catalytic subunit" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 61/169 (36%), Positives = 92/169 (54%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             +R   + ++ SP   + LR++FV S+A MCI+ + LGIGDRHL N ++  +TG  VGIDF
Sbjct:  3894 LRRAFVKMSTSPEAFLALRSHFVSSHALMCISHWILGIGDRHLSNFMINKETGGMVGIDF 3953

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGK--RLWVRHLN----EIDTLLSK- 113
             G++FG ATQ LP+PELMPFRLT   + +  P    G    + V  L     + D L+S  
Sbjct:  3954 GHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTM 4013

Query:   114 SFLLSVGVYNQKILEQKQY----LWFIQINVTAMSHQPKMKEPIILQEI 158
                +     + K  EQ+Q      W  +IN   ++  P  K   + +++
Sbjct:  4014 DVFVKEPSLDWKNFEQRQLKKGGTWIKEINTAEVNWYPLQKVSYVKRKL 4062

GO:0003677 "DNA binding" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0002326 "B cell lineage commitment" evidence=IEA

GO:0002328 "pro-B cell differentiation" evidence=IEA

GO:0002360 "T cell lineage commitment" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IEA

GO:0033153 "T cell receptor V(D)J recombination" evidence=IEA

GO:0035234 "germ cell programmed cell death" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q8QGX4 PRKDC "DNA-dependent protein kinase catalytic subunit" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 9.2e-19, P = 9.2e-19
 Identities = 60/169 (35%), Positives = 92/169 (54%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             +R   + ++ SP   + LR++FV S+A MC++ + LGIGDRHL N ++  +TG  VGIDF
Sbjct:  3889 LRRAFVKMSTSPEAFLALRSHFVSSHALMCVSHWILGIGDRHLSNFMINKETGGMVGIDF 3948

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGK--RLWVRHLN----EIDTLLSK- 113
             G++FG ATQ LP+PELMPFRLT   + +  P    G    + V  L     + D L+S  
Sbjct:  3949 GHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTM 4008

Query:   114 SFLLSVGVYNQKILEQKQY----LWFIQINVTAMSHQPKMKEPIILQEI 158
                +     + K  EQ+Q      W  +IN   ++  P  K   + +++
Sbjct:  4009 DVFVKEPSLDWKNFEQRQLKKGGTWIKEINTAEVNWYPLQKVSYVKRKL 4057

GO:0003677 "DNA binding" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=TAS

GO:0070419 "nonhomologous end joining complex" evidence=ISS

UNIPROTKB|E7EUY0 PRKDC "DNA-dependent protein kinase catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 59/161 (36%), Positives = 89/161 (55%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++   + ++ SP   + LR++F  S+A +CI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct:  3851 LKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDF 3910

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKR--LWVRHLNEIDT---LLSKSF 115
             G++FG ATQ LP+PELMPFRLT   + +  P    G    + V  L    +   LL+ + 
Sbjct:  3911 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTM 3970

Query:   116 LLSVGV--YNQKILEQKQYL----WFIQINVTAMSHQPKMK 150
              + V    ++ K  EQK       W  +INV   +  P+ K
Sbjct:  3971 DVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQK 4011

GO:0003677 "DNA binding" evidence=IEA

GO:0004677 "DNA-dependent protein kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P78527 PRKDC "DNA-dependent protein kinase catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 59/161 (36%), Positives = 89/161 (55%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             ++   + ++ SP   + LR++F  S+A +CI+ + LGIGDRHL N +V  +TG  +GIDF
Sbjct:  3883 LKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDF 3942

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQGKR--LWVRHLNEIDT---LLSKSF 115
             G++FG ATQ LP+PELMPFRLT   + +  P    G    + V  L    +   LL+ + 
Sbjct:  3943 GHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTM 4002

Query:   116 LLSVGV--YNQKILEQKQYL----WFIQINVTAMSHQPKMK 150
              + V    ++ K  EQK       W  +INV   +  P+ K
Sbjct:  4003 DVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQK 4043

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0002326 "B cell lineage commitment" evidence=IEA

GO:0002328 "pro-B cell differentiation" evidence=IEA

GO:0002360 "T cell lineage commitment" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IEA

GO:0033153 "T cell receptor V(D)J recombination" evidence=IEA

GO:0035234 "germ cell programmed cell death" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070419 "nonhomologous end joining complex" evidence=IDA

GO:0004672 "protein kinase activity" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0004677 "DNA-dependent protein kinase activity" evidence=IDA

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=TAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005667 "transcription factor complex" evidence=IDA

UNIPROTKB|Q9DEI1 prkdc "DNA-dependent protein kinase catalytic subunit" [Xenopus laevis (taxid:8355)]

 Score = 240 (89.5 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 43/96 (44%), Positives = 66/96 (68%)

Query:     1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
             +R   + ++ +P   + LR++F RS+A +C++ + +GIGDRHL N ++  +TG  +GIDF
Sbjct:  3901 LRRAFVKMSTTPEAFLSLRSHFARSHALLCVSHWIVGIGDRHLSNFMINMETGGMIGIDF 3960

Query:    61 GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
             G++FG ATQ LP+PELMPFRLT  I+ +  P    G
Sbjct:  3961 GHAFGTATQFLPVPELMPFRLTRQIVNLMLPMKDSG 3996

GO:0070419 "nonhomologous end joining complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
cd05172	235	cd05172, PIKKc_DNA-PK, DNA-dependent protein kinas	3e-40
smart00146	240	smart00146, PI3Kc, Phosphoinositide 3-kinase, cata	2e-25
pfam00454	233	pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3-	1e-24
cd05164	222	cd05164, PIKKc, Phosphoinositide 3-kinase-related	4e-24
cd00892	237	cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and	6e-21
COG5032	2105	COG5032, TEL1, Phosphatidylinositol kinase and pro	2e-20
cd00142	219	cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI	5e-19
cd05171	279	cd05171, PIKKc_ATM, Ataxia telangiectasia mutated	2e-16
cd05169	280	cd05169, PIKKc_TOR, TOR (Target of rapamycin), cat	4e-16
cd00896	350	cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3	5e-12
cd05170	307	cd05170, PIKKc_SMG1, Suppressor of morphogenetic e	6e-12
cd00891	352	cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K),	7e-12
cd00894	365	cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase	1e-10
cd05165	366	cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K)	4e-09
cd05166	353	cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K	6e-08
cd05173	362	cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase	3e-07
cd05167	311	cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas	4e-07
cd00893	289	cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4	5e-07
cd05174	361	cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase	3e-06
cd00895	354	cd00895, PI3Kc_C2_beta, Phosphoinositide 3-kinase	5e-05
cd05168	293	cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase	6e-05
cd05175	366	cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase	1e-04
cd05176	353	cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase	1e-04
cd05177	354	cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase	3e-04
cd05163	253	cd05163, TRRAP, TRansformation/tRanscription domai	8e-04

>gnl|CDD|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score =  135 bits (341), Expect = 3e-40
 Identities = 51/95 (53%), Positives = 67/95 (70%)

Query: 2   REGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFG 61
           R  L+ ++ SP   + LR++F +S A MC++ + LGIGDRHL N LV  +TG  VGIDFG
Sbjct: 104 RRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFG 163

Query: 62  YSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
           ++FG ATQ LPIPELMPFRLTP  + + EP  + G
Sbjct: 164 HAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADG 198

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double strand breaks (DSBs) by joining together two free DNA ends of little homology. DNA-PK functions as a molecular sensor for DNA damage that enhances the signal via phosphorylation of downstream targets. It may also act as a protein scaffold that aids the localization of DNA repair proteins to the site of DNA damage. DNA-PK also plays a role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Length = 235

>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 16  VRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPE 75
              R NF RS A   +  Y LG+GDRH +N ++  KTG    IDFG+  G   +L   PE
Sbjct: 122 FEARKNFTRSCAGYSVITYILGLGDRHNDNIML-DKTGHLFHIDFGFILGNGPKLFGFPE 180

Query: 76  LMPFRLTPHILAV 88
            +PFRLTP ++ V
Sbjct: 181 RVPFRLTPEMVDV 193

Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Length = 240

>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase

 Score = 94.7 bits (236), Expect = 1e-24
 Identities = 39/89 (43%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 16  VRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPE 75
              R NFVRS A M +  Y LG GDRHL+N LV   TG+   IDFG  F  A +  P PE
Sbjct: 114 GEARKNFVRSCAGMSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCFPKA-KRGPKPE 172

Query: 76  LMPFRLTPHILAVNEPYGSQGKRLWVRHL 104
            +PFRLT   +     Y   G     R L
Sbjct: 173 RVPFRLTRPFVEAMGGYDPSGDEGLFREL 201

Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233

>gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 93.5 bits (233), Expect = 4e-24
 Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1   MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
           +++        P      R N+ RS A M I  Y LG+GDRHL+N L+  +TG  V IDF
Sbjct: 98  LKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDF 157

Query: 61  GYSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
           G  F      LP+PEL+PFRLT +I+      G +G
Sbjct: 158 GCIFEKGKT-LPVPELVPFRLTRNIINGMGITGVEG 192

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) domain. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 222

>gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 85.4 bits (212), Expect = 6e-21
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 10  KSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQ 69
             P   ++ RN + RS A M +  Y LG+GDRH EN L  + TG  V +DF   F     
Sbjct: 115 PDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGE- 173

Query: 70  LLPIPELMPFRLTPHILAVNEPYGSQG 96
            L +PE +PFRLT +++      G +G
Sbjct: 174 TLEVPERVPFRLTQNMVDAMGVLGVEG 200

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central role in regulating the replication checkpoint. ATR stabilizes replication forks by promoting the association of DNA polymerases with the fork. Preventing fork collapse is essential in preserving genomic integrity. ATR plays a role in normal cell growth and in response to DNA damage. Length = 237

>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]

 Score = 86.8 bits (215), Expect = 2e-20
 Identities = 33/95 (34%), Positives = 47/95 (49%)

Query: 2    REGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFG 61
             +       +P + +  R NF RS A   +  Y LG+GDRH  N L+   +G  + IDFG
Sbjct: 1910 YDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFG 1969

Query: 62   YSFGVATQLLPIPELMPFRLTPHILAVNEPYGSQG 96
            +    A    P PE +PFRLT +I+      G +G
Sbjct: 1970 FILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEG 2004

Length = 2105

>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 80.0 bits (198), Expect = 5e-19
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 1   MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDF 60
           + + L   +         R NF+ S A   +A Y LGIGDRH +N ++   TG+   IDF
Sbjct: 95  LSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDF 154

Query: 61  GYSFGVATQLLPIPELMPFRLTP 83
           G+ FG   + L   E +PFRLTP
Sbjct: 155 GFIFGKRKKFLG-RERVPFRLTP 176

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI4Ks produce PtdIns(4)P, the major precursor to important signaling phosphoinositides. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 219

>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 11  SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQL 70
            P +    R  + RS A   I  Y LG+GDRH  N L+  KT   V ID G +F    ++
Sbjct: 158 DPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFE-QGKI 216

Query: 71  LPIPELMPFRLTPHILAVNEPYGSQG 96
           LP+PE +PFRLT  I+      G  G
Sbjct: 217 LPVPETVPFRLTRDIVD---GMGITG 239

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity. Length = 279

>gnl|CDD|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 72.9 bits (180), Expect = 4e-16
 Identities = 31/64 (48%), Positives = 38/64 (59%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP 78
           R NF RS A M +  Y LG+GDRH  N ++   TG+ + IDFG  F VA      PE +P
Sbjct: 166 RTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVP 225

Query: 79  FRLT 82
           FRLT
Sbjct: 226 FRLT 229

TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with other proteins to form two distinct complexes, TORC1 and TORC2. TORC1 is involved in diverse growth-related functions including protein synthesis, nutrient use and transport, autophagy and stress responses. TORC2 is involved in organizing cytoskeletal structures. Length = 280

>gnl|CDD|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 20  NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP 74
           + FV+S A  C+  Y LG+GDRHL+N L+ TK G+   IDFGY  G   +  P P
Sbjct: 188 DTFVKSCAGYCVITYILGVGDRHLDNLLL-TKDGKLFHIDFGYILGRDPKPFPPP 241

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They phosphorylate only the substrate PtdIns. They interact with a regulatory subunit, Vps15, to form a membrane-associated complex. Class III PI3Ks are involved in protein and vesicular trafficking and sorting, autophagy, trimeric G-protein signaling, and phagocytosis. Length = 350

>gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRL 81
           + RS A M +  Y +G+GDRHL+N L+  KTG  V ID+   F    + L IPE +PFR+
Sbjct: 197 YARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKG-KSLRIPEKVPFRM 255

Query: 82  TPHILAVNEPYGSQG 96
           T +I       G +G
Sbjct: 256 TQNIETALGLTGVEG 270

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD. Length = 307

>gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 21  NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPF 79
           NF  S A  C+A Y LGIGDRH +N ++ TKTG    IDFG+  G   +   I  E  PF
Sbjct: 190 NFTYSCAGYCVATYVLGIGDRHNDNIML-TKTGHLFHIDFGHFLGNFKKKFGIKRERAPF 248

Query: 80  RLTPHILAV 88
            LTP +  V
Sbjct: 249 VLTPDMAYV 257

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class II PI3Ks comprise three catalytic isoforms that do not associate with any regulatory subunits. They selectively use PtdIns as a susbtrate to produce PtsIns(3)P. Length = 352

>gnl|CDD|119420 cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 200 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 258

Query: 81  LTPHILAVNEPYGSQGKR 98
           LTP  L V    G+ GK+
Sbjct: 259 LTPDFLFV---MGTSGKK 273

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). PI3Kgamma associates with one of two regulatory subunits, p101 and p84. It is activated by G-protein-coupled receptors (GPCRs) by direct binding to their betagamma subunits. It contains an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. PI3Kgamma signaling controls diverse immune and vascular functions including cell recruitment, mast cell activation, platelet aggregation, and smooth muscle contractility. Length = 365

>gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20  NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMP 78
             F  S A  C+A + LGIGDRH +N +V  +TG+   IDFG+  G       I  E +P
Sbjct: 198 EEFTLSCAGYCVATFVLGIGDRHNDNIMV-KETGQLFHIDFGHILGNYKSKFGINRERVP 256

Query: 79  FRLTPHILAV 88
           F LTP  + V
Sbjct: 257 FVLTPDFVHV 266

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates PtdIns and PtdIns(4)P. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Length = 366

>gnl|CDD|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 21  NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
           NF+ S A  C+A Y LGI DRH +N ++ TK+G    IDFG   G A
Sbjct: 189 NFIYSCAGCCVATYVLGICDRHNDNIML-TKSGHMFHIDFGKFLGHA 234

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. They are activated by a variety of stimuli including chemokines, cytokines, lysophosphatidic acid (LPA), insulin, and tyrosine kinase receptors. Length = 353

>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-E 75
           R    F  S A  C+A Y LGIGDRH +N +V  K G+   IDFG+  G       I  E
Sbjct: 191 RAIEEFTLSCAGYCVATYVLGIGDRHSDNIMV-RKNGQLFHIDFGHILGNFKSKFGIKRE 249

Query: 76  LMPFRLTPHILAVNEPYGSQGK 97
            +PF LT   + V +    QGK
Sbjct: 250 RVPFILTYDFIHVIQ----QGK 267

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. In addition, PI3Kbeta can also be activated by G-protein-coupled receptors. Deletion of PI3Kbeta in mice results in early lethality at around day three of development. PI3Kbeta plays an important role in regulating sustained integrin activation and stable platelet agrregation, especially under conditions of high shear stress. Length = 362

>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP---- 74
           R NF+RS A   +  Y L I DRH  N ++    G  + IDFG+ F ++      P    
Sbjct: 145 RENFIRSMAAYSLISYLLQIKDRHNGNIMI-DDDGHIIHIDFGFIFEIS------PGGNL 197

Query: 75  --ELMPFRLT 82
             E  PF+LT
Sbjct: 198 KFESAPFKLT 207

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311

>gnl|CDD|119419 cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP 78
           R NF+ S A   +  Y L I DRH  N L+    G  + IDFG+    +       E   
Sbjct: 124 RYNFIESMAGYSLLCYLLQIKDRHNGNILL-DSDGHIIHIDFGFILDSSPGNNLGFEPAA 182

Query: 79  FRLTPHIL 86
           F+ T  ++
Sbjct: 183 FKFTKEMV 190

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. Length = 289

>gnl|CDD|119434 cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG-VATQLLPIPELMPFR 80
           F  S A  C+A Y LGIGDRH +N ++  ++G+   IDFG+  G   T+     E +PF 
Sbjct: 196 FTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERVPFI 254

Query: 81  LT 82
           LT
Sbjct: 255 LT 256

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. PI3Kdelta is mainly expressed in immune cells and plays an important role in cellular and humoral immunity. It plays a major role in antigen receptor signaling in B-cells, T-cells, and mast cells. It regulates the differentiation of peripheral helper T-cells and controls the development and function of regulatory T-cells. Length = 361

>gnl|CDD|119421 cd00895, PI3Kc_C2_beta, Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 21  NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
           NF+ S A  C+A Y LGI DRH +N ++ T TG    IDFG   G A
Sbjct: 190 NFIYSCAGCCVATYVLGICDRHNDNIMLKT-TGHMFHIDFGRFLGHA 235

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II beta isoform, PI3K-C2beta, contributes to the migration and survival of cancer cells. It regulates Rac activity and impacts membrane ruffling, cell motility, and cadherin-mediated cell-cell adhesion. Length = 354

>gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP---- 74
           + NF+ S A   +  Y L I DRH  N L+    G  + IDFG+    +      P    
Sbjct: 126 QKNFIESLAGYSLICYLLQIKDRHNGNILI-DNDGHIIHIDFGFMLSNS------PGNVG 178

Query: 75  -ELMPFRLTPHILAV 88
            E  PF+LT   + V
Sbjct: 179 FETAPFKLTQEYIEV 193

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KIIIbeta also functions in the genesis, transport, and exocytosis of synaptic vesicles. The Drosophila PI4KIIIbeta is essential for cytokinesis during spermatogenesis. Length = 293

>gnl|CDD|88554 cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 199 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 257

Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 258 LTQDFLIV 265

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. PI3Kalpha plays an important role in insulin signaling. It also mediates physiologic heart growth and provides protection from stress. Activating mutations of PI3Kalpha is associated with diverse forms of cancer at high frequency. Length = 366

>gnl|CDD|119435 cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 21  NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPF 79
           NF+ S A  C+A Y LGI DRH +N ++   TG    IDFG   G A        +  PF
Sbjct: 189 NFIYSCAGCCVATYVLGICDRHNDNIML-RSTGHMFHIDFGKFLGHAQMFGSFKRDRAPF 247

Query: 80  RLT 82
            LT
Sbjct: 248 VLT 250

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II alpha isoform, PI3K-C2alpha, plays key roles in clathrin assembly and clathrin-mediated membrane trafficking, insulin signaling, vascular smooth muscle contraction, and the priming of neurosecretory granule exocytosis. Length = 353

>gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 21  NFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA 67
           NF  S A  C+  + LG+ DRH +N ++ T +G    IDFG   G A
Sbjct: 190 NFFHSCAGWCVVTFILGVCDRHNDNIML-THSGHMFHIDFGKFLGHA 235

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II gamma isoform, PI3K-C2gamma, is expressed in the liver, breast, and prostate. It's biological function remains unknown. Length = 354

>gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 22/81 (27%), Positives = 32/81 (39%)

Query: 5   LLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSF 64
           +LS   +  +    R  F    A +    Y L I +R+ +   +   TG     D   S 
Sbjct: 125 ILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSI 184

Query: 65  GVATQLLPIPELMPFRLTPHI 85
                L    E +PFRLTP+I
Sbjct: 185 NNNKPLFHNNEPVPFRLTPNI 205

TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replication, and DNA repair. TRRAP also exists in non-HAT complexes such as the p400 and MRN complexes, which are implicated in ATP-dependent remodeling and DNA repair, respectively. Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
cd00894	365	PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c	100.0
cd05165	366	PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I,	100.0
cd05177	354	PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c	100.0
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	100.0
cd00895	354	PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl	100.0
cd00893	289	PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I	100.0
cd05176	353	PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c	100.0
cd05166	353	PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I	100.0
cd05168	293	PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T	100.0
cd05174	361	PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c	100.0
cd05175	366	PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c	100.0
cd05167	311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	100.0
cd05173	362	PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl	100.0
cd00896	350	PI3Kc_III Phosphoinositide 3-kinase (PI3K), class	100.0
cd05172	235	PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK)	100.0
cd05169	280	PIKKc_TOR TOR (Target of rapamycin), catalytic dom	100.0
cd05171	279	PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat	100.0
cd00892	237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	100.0
cd05164	222	PIKKc Phosphoinositide 3-kinase-related protein ki	100.0
cd05170	307	PIKKc_SMG1 Suppressor of morphogenetic effect on g	100.0
smart00146	202	PI3Kc Phosphoinositide 3-kinase, catalytic domain.	100.0
cd05163	253	TRRAP TRansformation/tRanscription domain-Associat	100.0
cd00142	219	PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f	100.0
KOG0904|consensus	1076		100.0
KOG0890|consensus	2382		100.0
KOG0905|consensus	1639		100.0
PF00454	235	PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina	100.0
COG5032	2105	TEL1 Phosphatidylinositol kinase and protein kinas	100.0
KOG0892|consensus	2806		99.98
KOG0906|consensus	843		99.97
KOG0902|consensus	1803		99.96
KOG0903|consensus	847		99.96
KOG0891|consensus	2341		99.82
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.77
KOG0889|consensus	3550		99.39
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	89.47
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	89.27
COG0661	517	AarF Predicted unusual protein kinase [General fun	89.25
KOG0616|consensus	355		88.9
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	88.78
PRK14879	211	serine/threonine protein kinase; Provisional	88.73
TIGR03843	253	conserved hypothetical protein. This model represe	88.39
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	88.11
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	87.88
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	86.98
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	86.41
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	86.16
KOG0608|consensus	1034		85.24
PF01636	239	APH: Phosphotransferase enzyme family This family	84.18
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	83.82
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	82.83
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	81.46

>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.6e-43  Score=308.77  Aligned_cols=151  Identities=25%  Similarity=0.264  Sum_probs=136.8

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++||.+.++++++|..+++||++|||+|||+||||||||||++||||+ ++|+++|||||++||+.++++++ ||+|||
T Consensus       179 l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PF  257 (365)
T cd00894         179 LSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPF  257 (365)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCe
Confidence            4689999999999999999999999999999999999999999999999 79999999999999999877776 999999


Q ss_pred             ccCHHHHHhhCCC---CchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhh---hhhhcceeeccchhhhh
Q psy18027         80 RLTPHILAVNEPY---GSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKIL---EQKQYLWFIQINVTAMS  144 (165)
Q Consensus        80 RLT~~~~~~mg~~---g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~---~~~~~~~~~~~~~~~~~  144 (165)
                      |||++|+++||+.   +++.|..|++.|+.+++++|+         ++|+++|+||.+..   +.++.+|.++.++++|.
T Consensus       258 kLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~~~i~~l~~~~~l~~se~eA~  337 (365)
T cd00894         258 VLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAK  337 (365)
T ss_pred             eecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHH
Confidence            9999999999955   456789999999999999997         37899999999754   44568999999999999


Q ss_pred             hCCCCCcc
Q psy18027        145 HQPKMKEP  152 (165)
Q Consensus       145 ~yp~~~~~  152 (165)
                      .|..+.+.
T Consensus       338 ~~f~~~I~  345 (365)
T cd00894         338 KHFLDQIE  345 (365)
T ss_pred             HHHHHHHH
Confidence            88877665

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=7.3e-43  Score=304.86  Aligned_cols=151  Identities=25%  Similarity=0.247  Sum_probs=136.9

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+||.+.++++++|.++++||++|||+|||+||||||||||++||||+ ++|+++|||||++||+.++.+++ ||+|||
T Consensus       179 l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~-~~G~l~HIDFG~ilg~~~~~~~i~~E~~PF  257 (366)
T cd05165         179 LLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVK-ETGQLFHIDFGHILGNYKSKFGINRERVPF  257 (366)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEc-CCCCEEEEehHHhhccCCccCCCCCCCCCe
Confidence            4689999999899999999999999999999999999999999999999 69999999999999999988886 999999


Q ss_pred             ccCHHHHHhhCCC----CchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhh---hhhhhcceeeccchhhh
Q psy18027         80 RLTPHILAVNEPY----GSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKI---LEQKQYLWFIQINVTAM  143 (165)
Q Consensus        80 RLT~~~~~~mg~~----g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~---~~~~~~~~~~~~~~~~~  143 (165)
                      |||++|+++||+.    ++++|..|++.|+.++.++|+         ++|+++++||++.   ++.++.+|.++.++++|
T Consensus       258 kLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~~~i~~lr~rf~l~~se~eA  337 (366)
T cd05165         258 VLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTSKEDIEYLRDTLALGKSEEEA  337 (366)
T ss_pred             eecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHH
Confidence            9999999999974    467888999999999999997         3789999999974   44456899999999999


Q ss_pred             hhCCCCCcc
Q psy18027        144 SHQPKMKEP  152 (165)
Q Consensus       144 ~~yp~~~~~  152 (165)
                      ..|.++.+.
T Consensus       338 ~~~f~~~I~  346 (366)
T cd05165         338 LKYFLDKFN  346 (366)
T ss_pred             HHHHHHHHH
Confidence            988877665

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P

>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.1e-42  Score=302.69  Aligned_cols=151  Identities=21%  Similarity=0.216  Sum_probs=136.7

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++||...++++++|.++++||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++..++ +|++||
T Consensus       170 l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF  248 (354)
T cd05177         170 IEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPF  248 (354)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCe
Confidence            4689999999999999999999999999999999999999999999999 89999999999999999866555 999999


Q ss_pred             ccCHHHHHhh--CCCCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhhh
Q psy18027         80 RLTPHILAVN--EPYGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~m--g~~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~~  145 (165)
                      |||++|++++  |+.++++|..|++.|+.++.++|+         ++|+++++||++..++   ++.+|.++.++++|..
T Consensus       249 ~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~  328 (354)
T cd05177         249 IFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATS  328 (354)
T ss_pred             eccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHH
Confidence            9999999866  666688999999999999999997         3789999999976544   4579999999999999


Q ss_pred             CCCCCcc
Q psy18027        146 QPKMKEP  152 (165)
Q Consensus       146 yp~~~~~  152 (165)
                      |..+.+.
T Consensus       329 ~f~~lI~  335 (354)
T cd05177         329 YFTKKIK  335 (354)
T ss_pred             HHHHHHH
Confidence            9888776

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.1e-42  Score=302.77  Aligned_cols=151  Identities=27%  Similarity=0.323  Sum_probs=138.4

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++|+.+.++++++|.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||+.++.+++ ||+|||
T Consensus       170 l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF  248 (352)
T cd00891         170 LMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPF  248 (352)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCe
Confidence            4689999999999999999999999999999999999999999999999 79999999999999998877775 999999


Q ss_pred             ccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhhhCC
Q psy18027         80 RLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMSHQP  147 (165)
Q Consensus        80 RLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~~yp  147 (165)
                      |||++|+++||+.|++.+..|++.|+.++.++|+         +.|+++++||++..++   ++.+|.++.++++|..|.
T Consensus       249 rLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~~~i~~l~~r~~l~~s~~~a~~~~  328 (352)
T cd00891         249 VLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSIEDIEYLRDALALDKSDEEATEYF  328 (352)
T ss_pred             eecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            9999999999999999888999999999999997         3788999999975444   557999999999999988


Q ss_pred             CCCcc
Q psy18027        148 KMKEP  152 (165)
Q Consensus       148 ~~~~~  152 (165)
                      .+.+.
T Consensus       329 ~~lI~  333 (352)
T cd00891         329 RKLIH  333 (352)
T ss_pred             HHHHH
Confidence            77665

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=3.5e-42  Score=299.16  Aligned_cols=152  Identities=25%  Similarity=0.239  Sum_probs=136.0

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+||.+.+|++++|.++++||++|||+|||+||||||||||++||||+ ++||++|||||++||+.+++.++ +|++||
T Consensus       170 l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF  248 (354)
T cd00895         170 LADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPF  248 (354)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCc
Confidence            4689999999999999999999999999999999999999999999999 89999999999999999855444 899999


Q ss_pred             ccCHHHHHhhCCC--CchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhhh
Q psy18027         80 RLTPHILAVNEPY--GSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~mg~~--g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~~  145 (165)
                      +||++|+++||+.  .+++|..|++.|+.++.++|+         ++|+++|+||.+..++   ++.+|.++.++++|..
T Consensus       249 ~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~~i~~l~~rf~l~~se~eA~~  328 (354)
T cd00895         249 VFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLEDLKYVYDALRPQDTEADATT  328 (354)
T ss_pred             cccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcchHHHHHHHHhCCCCCHHHHHH
Confidence            9999999999753  368899999999999999997         3789999999976554   4579999999999999


Q ss_pred             CCCCCccc
Q psy18027        146 QPKMKEPI  153 (165)
Q Consensus       146 yp~~~~~~  153 (165)
                      |..+.+..
T Consensus       329 ~f~~lI~~  336 (354)
T cd00895         329 YFTRLIES  336 (354)
T ss_pred             HHHHHHHH
Confidence            88777663

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not

>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=5.5e-42  Score=291.52  Aligned_cols=151  Identities=18%  Similarity=0.163  Sum_probs=135.4

Q ss_pred             ChHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCC
Q psy18027          1 MREGLLSVAK--SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP   78 (165)
Q Consensus         1 L~~~f~~~~~--~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vP   78 (165)
                      |++||.+.++  ++++|.++|++|++|||+|||+||||||||||++||||+ ++|+++|||||++||++|+..-.+|+||
T Consensus       104 l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid-~~G~liHIDFG~ilg~~p~~~~~~E~~P  182 (289)
T cd00893         104 LYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLD-SDGHIIHIDFGFILDSSPGNNLGFEPAA  182 (289)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhCcCCcCCCCCCCCC
Confidence            4678888886  578899999999999999999999999999999999999 6999999999999999987633479999


Q ss_pred             cccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchh--hhhhhhcceeeccchhhhhhCC
Q psy18027         79 FRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQK--ILEQKQYLWFIQINVTAMSHQP  147 (165)
Q Consensus        79 FRLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k--~~~~~~~~~~~~~~~~~~~~yp  147 (165)
                      ||||++|+++||+.++++|..|++.|+.++.++|+         +.|+.+++||++  .+..++.++.++.++++|..|.
T Consensus       183 FrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~  262 (289)
T cd00893         183 FKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTV  262 (289)
T ss_pred             eeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999997         378999999996  3344568999999999999988


Q ss_pred             CCCcc
Q psy18027        148 KMKEP  152 (165)
Q Consensus       148 ~~~~~  152 (165)
                      .+.+.
T Consensus       263 ~~lI~  267 (289)
T cd00893         263 MKKID  267 (289)
T ss_pred             HHHHH
Confidence            77665

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.

>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=3.9e-42  Score=298.82  Aligned_cols=151  Identities=24%  Similarity=0.241  Sum_probs=135.3

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+|+...+|++++|.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++..++ +|++||
T Consensus       169 l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PF  247 (353)
T cd05176         169 LAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPF  247 (353)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCe
Confidence            3579999899999999999999999999999999999999999999999 89999999999999999855544 999999


Q ss_pred             ccCHHHHHhhCCCC--chhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhhh
Q psy18027         80 RLTPHILAVNEPYG--SQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~mg~~g--~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~~  145 (165)
                      |||++|+++||+.+  +++|..|++.|+.+++++|+         ++|+++++||.+..++   ++.+|.++.++++|..
T Consensus       248 kLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~  327 (353)
T cd05176         248 VLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATI  327 (353)
T ss_pred             eecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHH
Confidence            99999999998644  35799999999999999997         3789999999976444   5679999999999999


Q ss_pred             CCCCCcc
Q psy18027        146 QPKMKEP  152 (165)
Q Consensus       146 yp~~~~~  152 (165)
                      |.++.+.
T Consensus       328 ~f~~lI~  334 (353)
T cd05176         328 FFTRLIE  334 (353)
T ss_pred             HHHHHHH
Confidence            9887765

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=7.3e-42  Score=297.60  Aligned_cols=151  Identities=23%  Similarity=0.263  Sum_probs=135.9

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++||...++++.+|.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++..++ ||+|||
T Consensus       169 l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PF  247 (353)
T cd05166         169 IAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPF  247 (353)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCc
Confidence            4689999999999999999999999999999999999999999999999 79999999999999999866665 899999


Q ss_pred             ccCHHHHHhhCCC--CchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhh---hhhhhcceeeccchhhhhh
Q psy18027         80 RLTPHILAVNEPY--GSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKI---LEQKQYLWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~mg~~--g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~---~~~~~~~~~~~~~~~~~~~  145 (165)
                      |||++|+++||+.  +++.|..|++.|+.++.++|+         ++|+++++||++.   ++.++.+|.++.++++|..
T Consensus       248 rLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~  327 (353)
T cd05166         248 VFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATI  327 (353)
T ss_pred             cccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHH
Confidence            9999999999865  357788999999999999997         3789999999974   4445689999999999999


Q ss_pred             CCCCCcc
Q psy18027        146 QPKMKEP  152 (165)
Q Consensus       146 yp~~~~~  152 (165)
                      |..+.+.
T Consensus       328 ~~~~~I~  334 (353)
T cd05166         328 QFTKMIQ  334 (353)
T ss_pred             HHHHHHH
Confidence            8877766

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any

>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=9.9e-42  Score=290.46  Aligned_cols=150  Identities=20%  Similarity=0.191  Sum_probs=134.2

Q ss_pred             ChHHHhccCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCc
Q psy18027          1 MREGLLSVAKSP-MNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~-~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPF   79 (165)
                      |++||.+.++++ ++|.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++. ..+|+|||
T Consensus       107 l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~-~~G~liHIDFG~~fg~~~~~-~~~E~vPF  184 (293)
T cd05168         107 LLDFFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILID-NDGHIIHIDFGFMLSNSPGN-VGFETAPF  184 (293)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEc-CCCCEEEEehHHhhcccccC-CCCCCCCE
Confidence            468999999874 6899999999999999999999999999999999999 59999999999999999966 44799999


Q ss_pred             ccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh---------hcccc-CCCchh----hhhhhhcceeeccchhhhhh
Q psy18027         80 RLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS---------FLLSV-GVYNQK----ILEQKQYLWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~---------~~l~~-~~~~~k----~~~~~~~~~~~~~~~~~~~~  145 (165)
                      |||++|+++||+.+++.+..|++.|+.++.++|+.         .|+.. ++|+.+    ..+.+..++.++.++++|..
T Consensus       185 rLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~  264 (293)
T cd05168         185 KLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEV  264 (293)
T ss_pred             EecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999999999973         56666 999987    45666789999999999988


Q ss_pred             CCCCCcc
Q psy18027        146 QPKMKEP  152 (165)
Q Consensus       146 yp~~~~~  152 (165)
                      |..+.+.
T Consensus       265 ~~~~lI~  271 (293)
T cd05168         265 FVDELIN  271 (293)
T ss_pred             HHHHHHH
Confidence            8776655

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII

>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=9.2e-42  Score=297.31  Aligned_cols=153  Identities=22%  Similarity=0.268  Sum_probs=134.0

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+||.+.+|+ +.|.+++++|++|||+|||+||||||||||++||||+ ++|+++|||||++||+.++.+++ ||+|||
T Consensus       176 l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPF  253 (361)
T cd05174         176 LLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPF  253 (361)
T ss_pred             HHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCe
Confidence            35789888876 5788899999999999999999999999999999999 79999999999999998877765 999999


Q ss_pred             ccCHHHHHhhCC---CCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhh---hhhhhcceeeccchhhhh
Q psy18027         80 RLTPHILAVNEP---YGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKI---LEQKQYLWFIQINVTAMS  144 (165)
Q Consensus        80 RLT~~~~~~mg~---~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~---~~~~~~~~~~~~~~~~~~  144 (165)
                      |||++|+++||+   .+++.|..|++.|+.++.++|+         ++|+++|+||.+.   ++.+..+|.++.++++|.
T Consensus       254 kLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~  333 (361)
T cd05174         254 ILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEAL  333 (361)
T ss_pred             eccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHH
Confidence            999999999974   3467788999999999999997         3789999999865   444568999999999999


Q ss_pred             hCCCCCcccch
Q psy18027        145 HQPKMKEPIIL  155 (165)
Q Consensus       145 ~yp~~~~~~~~  155 (165)
                      .+.++++...+
T Consensus       334 ~~f~~~i~~s~  344 (361)
T cd05174         334 KHFRVKFNEAL  344 (361)
T ss_pred             HHHHHHHHHHH
Confidence            88888776444

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1e-41  Score=297.08  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=132.8

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+|+...++ .+.|.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++.+++ ||++||
T Consensus       179 l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PF  256 (366)
T cd05175         179 LHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPF  256 (366)
T ss_pred             HHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCe
Confidence            3578887765 46799999999999999999999999999999999999 79999999999999999987765 999999


Q ss_pred             ccCHHHHHhhCCC-----CchhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhh
Q psy18027         80 RLTPHILAVNEPY-----GSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTA  142 (165)
Q Consensus        80 RLT~~~~~~mg~~-----g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~  142 (165)
                      |||++|+.+||+.     +++.|..|+.+|+.++.++|+         ++|+++|+||.+..++   ++.+|.++.++++
T Consensus       257 kLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~~i~~lr~rf~l~~sd~e  336 (366)
T cd05175         257 VLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQE  336 (366)
T ss_pred             EecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccHHHHHHHhcCCCCCHHH
Confidence            9999999999753     468899999999999999997         3789999999976554   5579999999999


Q ss_pred             hhhCCCCCcc
Q psy18027        143 MSHQPKMKEP  152 (165)
Q Consensus       143 ~~~yp~~~~~  152 (165)
                      |..|..+.+-
T Consensus       337 A~~~f~~~I~  346 (366)
T cd05175         337 ALEYFMKQMN  346 (366)
T ss_pred             HHHHHHHHHH
Confidence            9988877654

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.8e-41  Score=290.79  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=133.9

Q ss_pred             ChHHHhccCCC--chHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCC
Q psy18027          1 MREGLLSVAKS--PMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP   78 (165)
Q Consensus         1 L~~~f~~~~~~--~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vP   78 (165)
                      |.+||.+.+++  +.+|..+|+||++|||+|||+||||||||||++||||+ .+|+++|||||++||++|+..-.+|+||
T Consensus       125 l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid-~~G~l~HIDFG~il~~~p~~~~~~E~~P  203 (311)
T cd05167         125 LYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMID-DDGHIIHIDFGFIFEISPGGNLKFESAP  203 (311)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEc-CCCCEEEEeeHHhhccCCCCCCCcCCCC
Confidence            46899998864  57999999999999999999999999999999999999 6999999999999999986533479999


Q ss_pred             cccCHHHHHhhCCCC-chhHHHHHHHHHHHHHHhhh---------hhccccCCCchh--hhhhhhcceeeccchhhhhhC
Q psy18027         79 FRLTPHILAVNEPYG-SQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQK--ILEQKQYLWFIQINVTAMSHQ  146 (165)
Q Consensus        79 FRLT~~~~~~mg~~g-~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k--~~~~~~~~~~~~~~~~~~~~y  146 (165)
                      ||||++|+++||+.+ ++.|..|++.|+.++.++|+         ++|+++++||++  .++.++.+|.++.++++|..|
T Consensus       204 FkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~  283 (311)
T cd05167         204 FKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEF  283 (311)
T ss_pred             EeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHH
Confidence            999999999999999 77899999999999999997         378999999986  234456899999999999988


Q ss_pred             CCCCcc
Q psy18027        147 PKMKEP  152 (165)
Q Consensus       147 p~~~~~  152 (165)
                      ..+.+.
T Consensus       284 ~~~lI~  289 (311)
T cd05167         284 MLSLIA  289 (311)
T ss_pred             HHHHHH
Confidence            776654

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole

>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=4.6e-41  Score=293.17  Aligned_cols=150  Identities=25%  Similarity=0.298  Sum_probs=130.8

Q ss_pred             hHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCcc
Q psy18027          2 REGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR   80 (165)
Q Consensus         2 ~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPFR   80 (165)
                      .+||.+.++ +++|..+++||++|||+|||+||||||||||++||||+ ++|+++|||||++||+.++.+++ ||+||||
T Consensus       177 ~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFk  254 (362)
T cd05173         177 LNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFI  254 (362)
T ss_pred             HHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCee
Confidence            578877544 46788899999999999999999999999999999999 79999999999999998777765 9999999


Q ss_pred             cCHHHHHhhCC--CC-chhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhh---hhhcceeeccchhhhhh
Q psy18027         81 LTPHILAVNEP--YG-SQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILE---QKQYLWFIQINVTAMSH  145 (165)
Q Consensus        81 LT~~~~~~mg~--~g-~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~---~~~~~~~~~~~~~~~~~  145 (165)
                      ||++|+++||.  .| ++.|..|++.|+.++.++|+         ++|+++++||.+..+   .++.+|.++.++++|..
T Consensus       255 LT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~~~i~~l~~r~~l~~se~eA~~  334 (362)
T cd05173         255 LTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALK  334 (362)
T ss_pred             ecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccchhHHHHHHHhcCCCCCHHHHHH
Confidence            99999999962  23 46688899999999999997         378999999996644   45689999999999998


Q ss_pred             CCCCCccc
Q psy18027        146 QPKMKEPI  153 (165)
Q Consensus       146 yp~~~~~~  153 (165)
                      +.++.+-.
T Consensus       335 ~f~~~i~~  342 (362)
T cd05173         335 QFRQKFDE  342 (362)
T ss_pred             HHHHHHHH
Confidence            88877663

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de

>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.7e-40  Score=288.68  Aligned_cols=147  Identities=23%  Similarity=0.353  Sum_probs=134.1

Q ss_pred             ChHHHhccCCCchH----HHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCC
Q psy18027          1 MREGLLSVAKSPMN----RVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL   76 (165)
Q Consensus         1 L~~~f~~~~~~~~~----~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~   76 (165)
                      +.+||.+.++++..    |.++|+||++|||+|||+||||||||||++||||+ ++|+++|||||++||++++    |+.
T Consensus       165 l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p~----~~~  239 (350)
T cd00896         165 ILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDPK----PFP  239 (350)
T ss_pred             HHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCCC----CCC
Confidence            46899999998877    57999999999999999999999999999999999 7999999999999999985    567


Q ss_pred             CCcccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchh-----hhhhhhcceeeccchhh
Q psy18027         77 MPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQK-----ILEQKQYLWFIQINVTA  142 (165)
Q Consensus        77 vPFRLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k-----~~~~~~~~~~~~~~~~~  142 (165)
                      ||||||++|+++||+.|++||..|++.|+.++.++|+         +.|+++++||++     .++.++.+|.++.++++
T Consensus       240 ~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~e  319 (350)
T cd00896         240 PPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEE  319 (350)
T ss_pred             CCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999999999999999999999999997         378999999975     56667789999999999


Q ss_pred             hhhCCCCCcc
Q psy18027        143 MSHQPKMKEP  152 (165)
Q Consensus       143 ~~~yp~~~~~  152 (165)
                      |..|..+.+.
T Consensus       320 a~~~~~~lI~  329 (350)
T cd00896         320 AIKHFQNLIN  329 (350)
T ss_pred             HHHHHHHHHH
Confidence            9988877665

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin

>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=2.3e-40  Score=274.09  Aligned_cols=122  Identities=44%  Similarity=0.724  Sum_probs=114.0

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||++.++++++|+.+|++|++|+|+||++|||||||||||+||||+++||+++|||||++|+++++.+++||.||||
T Consensus       103 l~~~~~~~~~~~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFR  182 (235)
T cd05172         103 LRRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFR  182 (235)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCee
Confidence            47899999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.+...+|++     .++++.+.|+
T Consensus       183 LT~~~~~~~g~~g~~G~--f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dp  229 (235)
T cd05172         183 LTPQFVNLMEPMKADGL--LRSCMVHTLRALRNERHLLLSTMDVFVKEP  229 (235)
T ss_pred             eCHHHHHHhCCCCCCCh--HHHHHHHHHHHHHcCHHHHHHHHHHHhhCc
Confidence            99999999999999997  899999999999963     4566666665

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st

>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=4.1e-40  Score=277.56  Aligned_cols=122  Identities=32%  Similarity=0.485  Sum_probs=112.6

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||+..++++++|+.+|++|++|+|+||++|||||||||||+||||++.||+++|||||++|+++++.+++||.||||
T Consensus       148 l~~~~~~~~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFR  227 (280)
T cd05169         148 LRKILWLKSPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFR  227 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcc
Confidence            47899999999999999999999999999999999999999999999998899999999999999998767889999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.++.++|++     .++++.+.|+
T Consensus       228 LT~~~~~~lG~~g~~G~--F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dp  274 (280)
T cd05169         228 LTRMLVNALGVSGIEGT--FRTTCEDVMNVLRENKESLMAVLEAFVHDP  274 (280)
T ss_pred             cCHHHHHHhCCCCCCCc--hHHHHHHHHHHHhcChHHHHHHHHHHHhCc
Confidence            99999999999999996  899999999999963     4556666655

TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with

>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=7.7e-39  Score=270.46  Aligned_cols=121  Identities=34%  Similarity=0.500  Sum_probs=111.7

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||+..++++++|+.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|+++++ +++||.||||
T Consensus       148 l~~~f~~~~~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~-l~~pe~vPFR  226 (279)
T cd05171         148 FRYFFLEKFLDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKI-LPVPETVPFR  226 (279)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcC-CCCCCcCChh
Confidence            478999999999999999999999999999999999999999999999999999999999999999985 8999999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.++.++|++     ..|++.+.|+
T Consensus       227 LT~~~~~~lg~~g~~g~--f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dp  273 (279)
T cd05171         227 LTRDIVDGMGITGVEGV--FRRCCEKTLEVLRDNKDAILTILEVLLYDP  273 (279)
T ss_pred             hhHHHHHHhCCCCCcch--HHHHHHHHHHHHHcChHHHHHHHHHHHhCc
Confidence            99999999999999997  789999999999863     3455555554

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1.7e-38  Score=263.18  Aligned_cols=121  Identities=31%  Similarity=0.484  Sum_probs=111.2

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||.++++++++|+.+|++|+.|+|+||++|||||||||||+|||+++.||+++|||||++|++++ .+++||.||||
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~-~~~~pe~vPFR  184 (237)
T cd00892         106 FHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGE-TLEVPERVPFR  184 (237)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccc-cCCCCCCCCcc
Confidence            46899999999999999999999999999999999999999999999998899999999999999987 77899999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.++.++|++     .+++..+.|+
T Consensus       185 LT~~~~~~lg~~g~~g~--F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dp  231 (237)
T cd00892         185 LTQNMVDAMGVLGVEGL--FRKSCEVTLRLLRSNKETLMSVLETFIHDP  231 (237)
T ss_pred             cCHHHHHHhCCCCCCCc--hHHHHHHHHHHHHhCHHHHHHHHHHHhhcc
Confidence            99999999999999996  899999999999964     3455555554

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central

>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=3.8e-38  Score=258.68  Aligned_cols=111  Identities=36%  Similarity=0.581  Sum_probs=106.2

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||+..++++++|+.+|++|+.|+|++|+++||||+|||||+|||+++.||+++|||||++|++++ .+++||.||||
T Consensus        98 l~~~~~~~~~~~~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~-~~~~~e~vPFR  176 (222)
T cd05164          98 LKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGK-TLPVPELVPFR  176 (222)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCC-CCCCCCCCCEE
Confidence            57999999999999999999999999999999999999999999999998899999999999999997 67789999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS  114 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~  114 (165)
                      |||||+++||+.|++|.  |+..|+.++..+|++
T Consensus       177 LT~~~~~~lg~~g~~G~--f~~~~~~~~~~Lr~~  208 (222)
T cd05164         177 LTRNIINGMGITGVEGL--FRKICEQTLEVFRKH  208 (222)
T ss_pred             eCHHHHHHhCCCCcCCh--HHHHHHHHHHHHHhC
Confidence            99999999999999997  899999999999864

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d

>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=7.5e-38  Score=267.75  Aligned_cols=121  Identities=30%  Similarity=0.496  Sum_probs=111.7

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |+++++..++++++|+.+|++|++|+|++|+++||||||||||+||||++.||+++|||||++|++++ .+++||.||||
T Consensus       176 l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~~~~-~l~~pE~VPFR  254 (307)
T cd05170         176 LARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKGK-SLRIPEKVPFR  254 (307)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhcccC-CCCCCCCCCee
Confidence            35678888999999999999999999999999999999999999999999999999999999999987 78899999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.++.++|++     ..+++++.|+
T Consensus       255 LT~~~~~~lg~~g~~G~--f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DP  301 (307)
T cd05170         255 MTQNIETALGLTGVEGV--FRLSCEQVLHIMRRGRETLLTLLEAFVYDP  301 (307)
T ss_pred             eCHHHHHHhCCCCCchh--HHHHHHHHHHHHHcCHHHHHHHHHHHhhCc
Confidence            99999999999999997  899999999999963     4566666665

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno

>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain

Probab=100.00  E-value=1.4e-37  Score=251.24  Aligned_cols=111  Identities=33%  Similarity=0.531  Sum_probs=104.6

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||.+.++++.+|+.+|++|++|+|+||+++||+|+|||||+||||+ +||+++|||||++|+++++....+|.||||
T Consensus        68 l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFR  146 (202)
T smart00146       68 LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFR  146 (202)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEe-CCCCEEEEechhhhCccccCCCCCCCCCee
Confidence            5799999999999999999999999999999999999999999999999 899999999999999999766667999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS  114 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~  114 (165)
                      |||||+++||+.|.+|.  |+..|+.++..+|++
T Consensus       147 LT~~~~~~lg~~~~~g~--F~~~~~~~~~~Lr~~  178 (202)
T smart00146      147 LTPEMVDVMGDSGYFGL--FRSLCERALRALRKN  178 (202)
T ss_pred             cCHHHHHHhCCCcccch--HHHHHHHHHHHHHcC
Confidence            99999999999999997  789999988888863

Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.

>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=1e-37  Score=260.74  Aligned_cols=122  Identities=23%  Similarity=0.333  Sum_probs=112.7

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||+++++++++||.+|++|++|+|++|+++||+|+|||||+|||+++.||+++|||||+.|++++..+++||.||||
T Consensus       121 l~~~~~~~~~~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFR  200 (253)
T cd05163         121 LKNYILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFR  200 (253)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999677899999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      |||||+++||+.|++|.  |+..|+.+...+++.     ..+++++.|+
T Consensus       201 LT~ni~~~~g~~g~eG~--f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dp  247 (253)
T cd05163         201 LTPNIQHLIGPIGLEGI--LTSSMMAIARCLTEPEFDLENALQLFIRDE  247 (253)
T ss_pred             cCHHHHHHhCCcCcCCc--HHHHHHHHHHHHhcCHHHHHHHHHHHHcCh
Confidence            99999999999999998  789999999999853     3456666555

TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat

>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=100.00  E-value=3.3e-37  Score=251.94  Aligned_cols=111  Identities=32%  Similarity=0.495  Sum_probs=105.1

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++|++..++++++|+++|++|+.|+|+||+++|+||+|||||+|||+++.||+++|||||++|+++++... ||+||||
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~-~e~vPFR  173 (219)
T cd00142          95 LSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLG-RERVPFR  173 (219)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCC-CCCCCEe
Confidence            579999999999999999999999999999999999999999999999988999999999999999996555 9999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS  114 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~  114 (165)
                      |||||+++||+.|.+|.  |+..|+.++..+|++
T Consensus       174 LT~~~~~~~g~~~~~g~--F~~~~~~~~~~lr~~  205 (219)
T cd00142         174 LTPDLVNALGTGGVFGP--FRSLCVKAMLILRRH  205 (219)
T ss_pred             ccHHHHHHhCCcchhhh--HHHHHHHHHHHHHhC
Confidence            99999999999999986  899999999999864

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the

>KOG0904|consensus

Probab=100.00  E-value=4e-36  Score=279.81  Aligned_cols=150  Identities=25%  Similarity=0.253  Sum_probs=137.0

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+|+.+++|..+.+-++.+.|+.|||||||+||||||||||+|||||. +||++|||||||++|+.+.++++ +|+|||
T Consensus       890 L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh~KsKlGi~RERvPF  968 (1076)
T KOG0904|consen  890 LLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGHFKSKLGINRERVPF  968 (1076)
T ss_pred             HHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhccchhhcCcccccCce
Confidence            4689999999999999999999999999999999999999999999999 89999999999999999999998 999999


Q ss_pred             ccCHHHHHhhCCCCc---hh-HHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhhhh---cceeeccchhhh
Q psy18027         80 RLTPHILAVNEPYGS---QG-KRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQKQ---YLWFIQINVTAM  143 (165)
Q Consensus        80 RLT~~~~~~mg~~g~---~g-~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~~~---~~~~~~~~~~~~  143 (165)
                      .||++|+.+|+..+.   +. |..|+.+|+.||.++|+         ++|+.+|+|++.+.+|++   ...+++.++++|
T Consensus       969 vLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~~Di~ylrdtL~l~ktEEeA 1048 (1076)
T KOG0904|consen  969 VLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSKKDIDYLRDTLALGKTEEEA 1048 (1076)
T ss_pred             EeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccHHHHHHHHHHHhcCCcHHHH
Confidence            999999999987653   33 88899999999999997         389999999999999987   477888889999


Q ss_pred             hhCCCCCc
Q psy18027        144 SHQPKMKE  151 (165)
Q Consensus       144 ~~yp~~~~  151 (165)
                      --|..++.
T Consensus      1049 ~k~F~~k~ 1056 (1076)
T KOG0904|consen 1049 LKYFRDKF 1056 (1076)
T ss_pred             HHHHHHHH
Confidence            88877654

>KOG0890|consensus

Probab=100.00  E-value=7.7e-35  Score=289.35  Aligned_cols=121  Identities=36%  Similarity=0.589  Sum_probs=115.3

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      +.+||+++||+|.+|+.+|++|++|.|+|||+|||||+||||.+|||+|-.||+++|+||.++|+++. .+++||.||||
T Consensus      2186 FheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGe-tlevPEiVPFR 2264 (2382)
T KOG0890|consen 2186 FHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGE-TLEVPELVPFR 2264 (2382)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCc-ccCCCCcccee
Confidence            46899999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      ||+||+++||+.|.||.  ||+.||..++++|++     +.+.++++||
T Consensus      2265 LT~NMidamGp~G~EG~--Frk~cEiTLrLlR~n~e~LMSiL~tF~~DP 2311 (2382)
T KOG0890|consen 2265 LTQNMIDAMGPLGLEGS--FRKVCEITLRLLRKNRETLMSILETFVYDP 2311 (2382)
T ss_pred             cchhHHhhcCCcccchh--HHHHHHHHHHHHHhcchhHHHHHHHHHhCc
Confidence            99999999999999998  899999999999953     4578888886

>KOG0905|consensus

Probab=100.00  E-value=7e-35  Score=276.89  Aligned_cols=159  Identities=23%  Similarity=0.281  Sum_probs=139.8

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++||.+.+|++.+|.++.+||++|||||||+||||||+|||+||||+. +|||+||||||-++|+++.+-++ ++++||
T Consensus      1163 la~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQMfg~fKRDRaPF 1241 (1639)
T KOG0905|consen 1163 LAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPF 1241 (1639)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHHHhcccccccCCe
Confidence            5899999999999999999999999999999999999999999999999 89999999999999999943345 999999


Q ss_pred             ccCHHHHHhhCCCC--chhHHHHHHHHHHHHHHhhhh---------hccccCCCchhhhhhhhc---ceeeccchhhhhh
Q psy18027         80 RLTPHILAVNEPYG--SQGKRLWVRHLNEIDTLLSKS---------FLLSVGVYNQKILEQKQY---LWFIQINVTAMSH  145 (165)
Q Consensus        80 RLT~~~~~~mg~~g--~~g~~~~~~~~~~~~~~l~~~---------~~l~~~~~~~k~~~~~~~---~~~~~~~~~~~~~  145 (165)
                      .+|.+|.+++.+.+  +.-+..|+++||.++|++||+         .|+.+|+|+...+++++|   ...+..++.+|.-
T Consensus      1242 VfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~i~dLkYV~~aL~pq~td~eAT~ 1321 (1639)
T KOG0905|consen 1242 VFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQDLKYVYNALRPQDTDAEATV 1321 (1639)
T ss_pred             EEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccchhhHHHHHhhcCcccCChhHHH
Confidence            99999999997665  567889999999999999984         799999999999888873   5667777777777


Q ss_pred             CCCCCcccchhhHhh
Q psy18027        146 QPKMKEPIILQEILT  160 (165)
Q Consensus       146 yp~~~~~~~~~~~~~  160 (165)
                      +.-+.|+.-++-+.|
T Consensus      1322 ~FTkmIqsSLgs~~t 1336 (1639)
T KOG0905|consen 1322 QFTKMIQSSLGSAFT 1336 (1639)
T ss_pred             HHHHHHHHHhhhHHH
Confidence            777777665555554

>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=9.9e-34  Score=230.67  Aligned_cols=109  Identities=39%  Similarity=0.643  Sum_probs=93.5

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      +++||+..++++++|+.+|++|++|+|++|+++||+|+|||||+|||++.+||+++|||||++|+ ++ .+..+|.||||
T Consensus       101 ~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~hIDfg~~f~-~~-~~~~~e~vPFr  178 (235)
T PF00454_consen  101 LRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELIHIDFGFIFG-GK-HLPVPETVPFR  178 (235)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEEE--HSSCTT-HH-HGSSSS--SST
T ss_pred             HHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceeeeEEeHHhhh-cc-ccCCCCCCCeE
Confidence            36899999999999999999999999999999999999999999999988999999999999999 44 66789999999


Q ss_pred             cCHHHHHhh----CCCCchhHHHHHHHHHHHHHHhhh
Q psy18027         81 LTPHILAVN----EPYGSQGKRLWVRHLNEIDTLLSK  113 (165)
Q Consensus        81 LT~~~~~~m----g~~g~~g~~~~~~~~~~~~~~l~~  113 (165)
                      ||++|+++|    |+.|.+|.  |+..|+.++..+|+
T Consensus       179 LT~~~~~~~~~~l~~~~~~g~--f~~~~~~~~~~lr~  213 (235)
T PF00454_consen  179 LTRNMVNAMGGYLGPSGVEGL--FRSSCEAILRALRR  213 (235)
T ss_dssp             THHHHHHHTTTSSSTSHHHHH--HHHHHHHHHHHHHH
T ss_pred             eCHHHHHHHhccCCCchhHhH--HHHHHHHHHHHHhc
Confidence            999999999    88888887  78899888888886

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....

>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-33  Score=286.29  Aligned_cols=155  Identities=23%  Similarity=0.337  Sum_probs=132.1

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      |++||+..|+++++|+.+|+||++|+|+|||+||+||+|||||+|||+|+.||+++|||||++++..++.+++||.||||
T Consensus      1909 l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFr 1988 (2105)
T COG5032        1909 LYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFR 1988 (2105)
T ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHh
Confidence            58999999999999999999999999999999999999999999999997799999999999999999999999999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh---------hcccc------CCCchh---hhh--hhhcceeeccch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS---------FLLSV------GVYNQK---ILE--QKQYLWFIQINV  140 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~---------~~l~~------~~~~~k---~~~--~~~~~~~~~~~~  140 (165)
                      ||++|+++||+.|.||.  |+..|+.++..+|++         .|+..      +.||.+   ..+  ....+|...+.+
T Consensus      1989 LT~~iv~~mg~~g~EG~--Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~ 2066 (2105)
T COG5032        1989 LTRNIVEAMGVSGVEGS--FRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSE 2066 (2105)
T ss_pred             hhHHHHHhcCccchhhH--HHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998  899999999999973         44555      566665   111  122677777777


Q ss_pred             hhhhhCCCCCcccchhh
Q psy18027        141 TAMSHQPKMKEPIILQE  157 (165)
Q Consensus       141 ~~~~~yp~~~~~~~~~~  157 (165)
                      .++.-+-.-.++--+++
T Consensus      2067 ~~~~~~~~l~I~~sv~~ 2083 (2105)
T COG5032        2067 KDAEKFVDLLINKSVES 2083 (2105)
T ss_pred             hhhhhhcCCcHHHHHHH
Confidence            77777755555533333

>KOG0892|consensus

Probab=99.98  E-value=2.1e-33  Score=280.77  Aligned_cols=110  Identities=32%  Similarity=0.486  Sum_probs=107.3

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      ++.+|+++|++|-+|+++|.+||+|.|+.||+|||||+||||..||+||..||+++|||+|.+|++++ .++.||.||||
T Consensus      2592 fryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGk-ilptPE~VPFR 2670 (2806)
T KOG0892|consen 2592 FRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGK-ILPTPETVPFR 2670 (2806)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCC-cCCCCCcccce
Confidence            47899999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSK  113 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~  113 (165)
                      ||+++++.||..|+||+  |||+|+..+.++|+
T Consensus      2671 LTRDiVdgmGItGveGv--FrRccE~t~~vlR~ 2701 (2806)
T KOG0892|consen 2671 LTRDIVDGMGITGVEGV--FRRCCEFTLEVLRR 2701 (2806)
T ss_pred             eehhhccccCccCchHH--HHHHHHHHHHHHHh
Confidence            99999999999999998  89999999999996

>KOG0906|consensus

Probab=99.97  E-value=4.9e-31  Score=240.59  Aligned_cols=145  Identities=23%  Similarity=0.311  Sum_probs=128.0

Q ss_pred             HHHhccCCCc----hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCC
Q psy18027          3 EGLLSVAKSP----MNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMP   78 (165)
Q Consensus         3 ~~f~~~~~~~----~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vP   78 (165)
                      .|+.+..|+.    ..=...+++|++|||||||+||||||||||+||+|+. ++|++||||||++||.+|+.++    .|
T Consensus       659 ~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~FHiDFgyIlGRDPKP~p----p~  733 (843)
T KOG0906|consen  659 MYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDPKPFP----PP  733 (843)
T ss_pred             HHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEEEEeeeeeccCCCCCCC----Cc
Confidence            5666666654    2234589999999999999999999999999999999 8999999999999999998665    59


Q ss_pred             cccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh---------hccccCCCch-----hhhhhhhcceeeccchhhhh
Q psy18027         79 FRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS---------FLLSVGVYNQ-----KILEQKQYLWFIQINVTAMS  144 (165)
Q Consensus        79 FRLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~---------~~l~~~~~~~-----k~~~~~~~~~~~~~~~~~~~  144 (165)
                      .+|+++|+++||+..++-|..|+.+|+.++.++|++         .|.+++|||.     |.+-..|.+|.++.++++|-
T Consensus       734 MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~  813 (843)
T KOG0906|consen  734 MKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAAT  813 (843)
T ss_pred             cccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHH
Confidence            999999999999999999999999999999999973         7899999987     55666789999999999999


Q ss_pred             hCCCCCcc
Q psy18027        145 HQPKMKEP  152 (165)
Q Consensus       145 ~yp~~~~~  152 (165)
                      .|.++.|-
T Consensus       814 ~~fq~lI~  821 (843)
T KOG0906|consen  814 KHFQKLIN  821 (843)
T ss_pred             HHHHHHHH
Confidence            98877654

>KOG0902|consensus

Probab=99.96  E-value=3.9e-30  Score=247.92  Aligned_cols=149  Identities=20%  Similarity=0.175  Sum_probs=128.8

Q ss_pred             ChHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCC-CCCCCCC
Q psy18027          1 MREGLLSVAK--SPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQL-LPIPELM   77 (165)
Q Consensus         1 L~~~f~~~~~--~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~-l~~~E~v   77 (165)
                      |++||..+|+  +++.|+.+|.||++|+|||||++|+|+++||||+|||+| +.||++|||||++|+.+|+. ++ .|. 
T Consensus      1617 lyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~e~sPGgnl~-fE~- 1693 (1803)
T KOG0902|consen 1617 LYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMFESSPGGNLG-FEP- 1693 (1803)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCCCEEEEeeeeEEecCCCCccC-cCC-
Confidence            6799999997  568999999999999999999999999999999999999 89999999999999999987 55 576 


Q ss_pred             CcccCHHHHHhhCCCC-chhHHHHHHHHHHHHHHhhh---------hhccccCCCch--hhhhhhhcceeeccchhhhhh
Q psy18027         78 PFRLTPHILAVNEPYG-SQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQ--KILEQKQYLWFIQINVTAMSH  145 (165)
Q Consensus        78 PFRLT~~~~~~mg~~g-~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~--k~~~~~~~~~~~~~~~~~~~~  145 (165)
                      ||+||.+|+.+||+.. ..+|++|...|-..+-..|.         .+||++|+||+  +.++.+..||.++.++++|+.
T Consensus      1694 ~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~nl~~RF~pemsereAa~ 1773 (1803)
T KOG0902|consen 1694 PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIGNLRARFAPEMSEREAAL 1773 (1803)
T ss_pred             CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHHHHHHhhCcccchHHHHH
Confidence            9999999999999765 67788887777655544442         48999999999  445556689999999999999


Q ss_pred             CCCCCcc
Q psy18027        146 QPKMKEP  152 (165)
Q Consensus       146 yp~~~~~  152 (165)
                      |...-+.
T Consensus      1774 fm~~vi~ 1780 (1803)
T KOG0902|consen 1774 FMLSVIT 1780 (1803)
T ss_pred             HHHHHHH
Confidence            8765443

>KOG0903|consensus

Probab=99.96  E-value=9.3e-29  Score=228.28  Aligned_cols=139  Identities=22%  Similarity=0.312  Sum_probs=114.2

Q ss_pred             hHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          2 REGLLSVA-KSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         2 ~~~f~~~~-~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      ++||...+ ++++.|..+.+||+.||||||++||+|+|+||||+||||| ..|||+||||||++++.|+.++ .|.+||+
T Consensus       662 ~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvg-FEsAPFK  739 (847)
T KOG0903|consen  662 RHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVG-FESAPFK  739 (847)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcc-cccCchh
Confidence            44454444 5889999999999999999999999999999999999999 8999999999999999998887 5999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHH-----------HHHHHHHHHhhhhhccc-cCCCchhh----hhhhhcceeeccchhhhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWV-----------RHLNEIDTLLSKSFLLS-VGVYNQKI----LEQKQYLWFIQINVTAMS  144 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~-----------~~~~~~~~~l~~~~~l~-~~~~~~k~----~~~~~~~~~~~~~~~~~~  144 (165)
                      ||.+++++||+...+-|..|+           +|+..|+.++  +.|-+ .++||++.    ...+.+||.+++.+++.-
T Consensus       740 LT~EylEvmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lv--EiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~  817 (847)
T KOG0903|consen  740 LTTEYLEVMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLV--EIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQ  817 (847)
T ss_pred             hHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCCcccccChHHHHHHHHHhcccccHHHHH
Confidence            999999999977666555554           4445555555  35555 89999965    344568999999777653

>KOG0891|consensus

Probab=99.82  E-value=3.4e-21  Score=195.48  Aligned_cols=122  Identities=32%  Similarity=0.478  Sum_probs=111.2

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      +++-++..+++++.|...|.+|++|.|++|+++|++|+|||||+|.|+++.||.+.|||||.+|+.+.....+||.+|||
T Consensus      2105 l~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfR 2184 (2341)
T KOG0891|consen 2105 LYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFR 2184 (2341)
T ss_pred             HHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHH
Confidence            35667888999999999999999999999999999999999999999999999999999999999999777789999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh-----hccccCCCch
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS-----FLLSVGVYNQ  124 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~  124 (165)
                      +|++++++|.+.|.+|.  ++..|.....++|.+     .-++++.+|+
T Consensus      2185 lTrmli~amev~gl~g~--~~~t~e~v~~~lr~~~~sl~a~leafvydp 2231 (2341)
T KOG0891|consen 2185 LTRMLINAMEVTGIEGT--YRITCEHVMRVLRTNKESLMAVLEAFVYDP 2231 (2341)
T ss_pred             HHHHHHHhHHHHhhhhH--HHHHHHHHHHhhcCChHHHHHHHHhhhccc
Confidence            99999999999999998  688999999998842     2367777776

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.77  E-value=3.4e-19  Score=166.00  Aligned_cols=71  Identities=30%  Similarity=0.417  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcccCHHHHHhhC
Q psy18027         18 LRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNE   90 (165)
Q Consensus        18 ~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFRLT~~~~~~mg   90 (165)
                      .+.||++|+|+||+++|||||||||++||||+ .+|+++||||||+|++.+ +..-+-+.|.|+...|...++
T Consensus      1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rt-fkeKl~~s~vR~D~~l~eav~ 1199 (1374)
T PTZ00303       1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKT-FVEKLARSTVRIDDAFLAAVE 1199 (1374)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCch-hhhccCCCceehhHHHHHHHH
Confidence            36799999999999999999999999999999 899999999999999877 444456779999999987664

>KOG0889|consensus

Probab=99.39  E-value=4.8e-13  Score=138.33  Aligned_cols=111  Identities=20%  Similarity=0.307  Sum_probs=99.5

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFR   80 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFR   80 (165)
                      +++||.++|+++.+||.+|++|+.++|..++++|++.++.|.|+.+++++.||.++.-||-+....+++.+...|.||||
T Consensus      3350 l~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFR 3429 (3550)
T KOG0889|consen 3350 LKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFR 3429 (3550)
T ss_pred             HHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCee
Confidence            57999999999999999999999999999999999999999999999999999999999999998888788889999999


Q ss_pred             cCHHHHHhhCCCCchhHHHHHHHHHHHHHHhh
Q psy18027         81 LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLS  112 (165)
Q Consensus        81 LT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~  112 (165)
                      ||||++.++|..|+||... -..+..+..+++
T Consensus      3430 lTpni~~~i~~~~veg~l~-~s~~a~ar~l~~ 3460 (3550)
T KOG0889|consen 3430 LTPNIQEFIGDFGVEGLLA-GSMMAIARCLIE 3460 (3550)
T ss_pred             ecCCchhhhcchhhhhhhH-HHHHHHHHHHhC
Confidence            9999999999999999852 233334444443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=89.47  E-value=1.1  Score=34.53  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhcc--cCCCCCceeEecCCCcEEeeecccc
Q psy18027         21 NFVRSYACMCIAQYTLGI--GDRHLENTLVCTKTGRCVGIDFGYS   63 (165)
Q Consensus        21 ~F~~SlA~~sv~~YiLgi--gDRH~~Nili~~~tG~v~hIDFg~~   63 (165)
                      ..+..+|.....-+-.|+  ||-||+||+++  .|++.-||||..
T Consensus        94 ~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~--~~~~~liDfg~a  136 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR--DDKLYLIDFGLG  136 (199)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCcceEEEE--CCcEEEEECCCC
Confidence            455555544444444555  79999999998  799999999864

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=89.27  E-value=0.29  Score=38.32  Aligned_cols=25  Identities=28%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFG   65 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~   65 (165)
                      +|=+|+|||++  +|++.-||||.+-.
T Consensus       142 rDlkP~NIll~--~~~~~liDFG~a~~  166 (190)
T cd05145         142 GDLSEYNILYH--DGKPYIIDVSQAVE  166 (190)
T ss_pred             CCCChhhEEEE--CCCEEEEEccccee
Confidence            79999999998  79999999997643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=89.25  E-value=0.27  Score=45.52  Aligned_cols=25  Identities=44%  Similarity=0.522  Sum_probs=22.7

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      +|=||+||+++ ..|+++-+|||.+=
T Consensus       289 aDpHpGNi~v~-~~g~i~~lDfGi~g  313 (517)
T COG0661         289 ADPHPGNILVR-SDGRIVLLDFGIVG  313 (517)
T ss_pred             cCCCccceEEe-cCCcEEEEcCccee
Confidence            79999999999 78999999999763

>KOG0616|consensus

Probab=88.90  E-value=0.28  Score=43.09  Aligned_cols=44  Identities=25%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             HHHHHHHH------HHHHHHHhcc----cCCCCCceeEecCCCcEEeeecccccc
Q psy18027         21 NFVRSYAC------MCIAQYTLGI----GDRHLENTLVCTKTGRCVGIDFGYSFG   65 (165)
Q Consensus        21 ~F~~SlA~------~sv~~YiLgi----gDRH~~Nili~~~tG~v~hIDFg~~f~   65 (165)
                      +|..+.|-      .+.+-|+=+.    .|--|+|||+| ++|++=-+||||+=-
T Consensus       140 rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD-~~G~iKitDFGFAK~  193 (355)
T KOG0616|consen  140 RFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLD-QNGHIKITDFGFAKR  193 (355)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeec-cCCcEEEEeccceEE
Confidence            66665554      3445555443    48889999999 899999999998753

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=88.78  E-value=0.27  Score=38.90  Aligned_cols=35  Identities=23%  Similarity=0.124  Sum_probs=27.0

Q ss_pred             HHHHHHh---cc--cCCCCCceeEecCCCcEEeeeccccccc
Q psy18027         30 CIAQYTL---GI--GDRHLENTLVCTKTGRCVGIDFGYSFGV   66 (165)
Q Consensus        30 sv~~YiL---gi--gDRH~~Nili~~~tG~v~hIDFg~~f~~   66 (165)
                      ..+.|++   |+  +|=+|+|||++  +|++.-||||.+-..
T Consensus       128 ~~L~~l~H~~giiHrDlkP~NIli~--~~~v~LiDFG~a~~~  167 (190)
T cd05147         128 QIMRILYQDCRLVHADLSEYNLLYH--DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHhCCcccCCCCHHHEEEE--CCcEEEEEccccccC
Confidence            4445553   55  89999999998  589999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK14879 serine/threonine protein kinase; Provisional

Probab=88.73  E-value=1.3  Score=34.36  Aligned_cols=24  Identities=33%  Similarity=0.510  Sum_probs=21.4

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      ||-+|+|||++  .|.+.-||||..-
T Consensus       119 ~Dl~p~Nil~~--~~~~~liDf~~a~  142 (211)
T PRK14879        119 GDLTTSNMILS--GGKIYLIDFGLAE  142 (211)
T ss_pred             CCCCcccEEEE--CCCEEEEECCccc
Confidence            79999999998  7999999998654

>TIGR03843 conserved hypothetical protein

Probab=88.39  E-value=0.42  Score=40.50  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeeccccccccc
Q psy18027         23 VRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVAT   68 (165)
Q Consensus        23 ~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~   68 (165)
                      -..+.-++|+=+++.=.|||.+||+.. ++|+++-||=|.+|...+
T Consensus       132 ~~~l~riaVfDi~inNaDRk~GhiL~~-~dg~l~~IDHGl~f~~~~  176 (253)
T TIGR03843       132 HPQLRRMAVFDALVNNADRKGGHVLPG-PDGRVWGVDHGVCFHVEP  176 (253)
T ss_pred             cHHHhhhhhheeeeecCCCCCCcEeEc-CCCcEEEecCceecCCCC
Confidence            445778899999999999999999999 699999999999999875

This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=88.11  E-value=0.99  Score=40.59  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=22.1

Q ss_pred             cCCCCCceeEecCCCcEEeeecccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYS   63 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~   63 (165)
                      +|=||+||+++ .+|++.-+|||.+
T Consensus       281 ~D~hPgNilv~-~~g~i~liDfG~~  304 (437)
T TIGR01982       281 ADLHPGNIFVL-KDGKIIALDFGIV  304 (437)
T ss_pred             CCCCcccEEEC-CCCcEEEEeCCCe
Confidence            59999999998 7899999999976

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=87.88  E-value=0.5  Score=35.21  Aligned_cols=26  Identities=31%  Similarity=0.186  Sum_probs=22.2

Q ss_pred             ccCCCCCceeEecCCCcEEeeecccccc
Q psy18027         38 IGDRHLENTLVCTKTGRCVGIDFGYSFG   65 (165)
Q Consensus        38 igDRH~~Nili~~~tG~v~hIDFg~~f~   65 (165)
                      =||=||+|||++  .|++.-|||+.+--
T Consensus       111 HgD~~~~Nil~~--~~~~~liDf~~a~~  136 (170)
T cd05151         111 HNDLLPGNFLLD--DGRLWLIDWEYAGM  136 (170)
T ss_pred             cCCCCcCcEEEE--CCeEEEEecccccC
Confidence            399999999998  67899999987543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=86.98  E-value=0.39  Score=44.65  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             cCCCCCceeEecCCC----cEEeeecccccc
Q psy18027         39 GDRHLENTLVCTKTG----RCVGIDFGYSFG   65 (165)
Q Consensus        39 gDRH~~Nili~~~tG----~v~hIDFg~~f~   65 (165)
                      +|=||+||+++ .+|    +++-+|||.+=.
T Consensus       284 aDpHPGNIlv~-~~g~~~~~i~llDFGivg~  313 (537)
T PRK04750        284 ADMHPGNIFVS-YDPPENPRYIALDFGIVGS  313 (537)
T ss_pred             CCCChHHeEEe-cCCCCCCeEEEEecceEEE
Confidence            79999999998 566    999999998743

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=86.41  E-value=0.49  Score=39.44  Aligned_cols=23  Identities=39%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             cCCCCCceeEecCCCcEEeeecccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYS   63 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~   63 (165)
                      ||=||+||+++ ..| +.-||||..
T Consensus       159 ~Dikp~Nili~-~~g-i~liDfg~~  181 (232)
T PRK10359        159 GDPHKGNFIVS-KNG-LRIIDLSGK  181 (232)
T ss_pred             CCCChHHEEEe-CCC-EEEEECCCc
Confidence            89999999998 678 999999865

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=86.16  E-value=0.72  Score=36.02  Aligned_cols=29  Identities=24%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGVAT   68 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~~~   68 (165)
                      ||=+|+||+++ ++|++.=+|||.+.....
T Consensus       149 ~Dl~p~Nill~-~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         149 GDLSEFNILVD-DDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCCcccEEEc-CCCcEEEEECCccccCCC
Confidence            48899999999 699999999998865544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0608|consensus

Probab=85.24  E-value=0.88  Score=43.98  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFG   65 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~   65 (165)
                      .|--||||||| .+|||=-.|||.|-|
T Consensus       753 RDiKPDNILID-rdGHIKLTDFGLCTG  778 (1034)
T KOG0608|consen  753 RDIKPDNILID-RDGHIKLTDFGLCTG  778 (1034)
T ss_pred             cccCccceEEc-cCCceeeeecccccc
Confidence            47789999999 799999999999876

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=84.18  E-value=0.75  Score=35.41  Aligned_cols=33  Identities=36%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             HHHHhcccCCCCCceeEecCCCcEEeeeccccc
Q psy18027         32 AQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        32 ~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      ....+-=||=|++|||++..+|++.-|||+.+-
T Consensus       164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             CCcEEEEeccccccceeeeccceeEEEecccce
Confidence            345667799999999999667878789997764

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05119 RIO RIO kinase family, catalytic domain

Probab=83.82  E-value=0.89  Score=34.63  Aligned_cols=28  Identities=29%  Similarity=0.252  Sum_probs=23.4

Q ss_pred             ccCCCCCceeEecCCCcEEeeecccccccc
Q psy18027         38 IGDRHLENTLVCTKTGRCVGIDFGYSFGVA   67 (165)
Q Consensus        38 igDRH~~Nili~~~tG~v~hIDFg~~f~~~   67 (165)
                      =+|=||+||+++  +|.+.-||||..-...
T Consensus       138 H~Dl~p~Nili~--~~~~~liDfg~a~~~~  165 (187)
T cd05119         138 HGDLSEYNILVD--DGKVYIIDVPQAVEID  165 (187)
T ss_pred             cCCCChhhEEEE--CCcEEEEECccccccc
Confidence            468899999999  8999999998875443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=82.83  E-value=3.6  Score=32.64  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      +|-+|+||+++ ++|.+.=+|||..-
T Consensus       126 ~dl~~~Nill~-~~~~~~l~dfg~~~  150 (260)
T cd05069         126 RDLRAANILVG-DNLVCKIADFGLAR  150 (260)
T ss_pred             cccCcceEEEc-CCCeEEECCCccce
Confidence            79999999999 79999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=81.46  E-value=1.3  Score=36.43  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      +|=+|+|||++ .+|++.-||||.+-
T Consensus       166 rDlkp~NILv~-~~~~v~LIDfg~~~  190 (239)
T PRK01723        166 ADLNAHNILLD-PDGKFWLIDFDRGE  190 (239)
T ss_pred             CCCCchhEEEc-CCCCEEEEECCCcc
Confidence            59999999999 67899999997543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
1he8_A	965	Ras G12v-Pi 3-Kinase Gamma Complex Length = 965		7e-10
3dbs_A	960	Structure Of Pi3k Gamma In Complex With Gdc0941 Len		7e-10
3cst_A	966	Crystal Structure Of Pi3k P110gamma Catalytical Dom		7e-10
4dk5_A	959	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		8e-10
3ene_A	959	Complex Of Pi3k Gamma With An Inhibitor Length = 95		8e-10
1e8y_A	966	Structure Determinants Of Phosphoinositide 3-Kinase		8e-10
3nzs_A	954	Structure-Based Optimization Of Pyrazolo -Pyrimidin		8e-10
3qaq_A	960	Crystal Structure Of Pi3k-Gamma In Complex With Tri		8e-10
3apc_A	966	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		8e-10
4anv_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		8e-10
4anu_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		8e-10
3l54_A	966	Structure Of Pi3k Gamma With Inhibitor Length = 966		9e-10
1e8x_A	961	Structural Insights Into Phoshoinositide 3-Kinase E		2e-09
1e7u_A	961	Structure Determinants Of Phosphoinositide 3-Kinase		2e-09
4anx_A	980	Complexes Of Pi3kgamma With Isoform Selective Inhib		2e-09
3ihy_A	600	Human Pik3c3 Crystal Structure Length = 600		3e-08
3ls8_A	614	Crystal Structure Of Human Pik3c3 In Complex With 3		3e-08
2y3a_A	1092	Crystal Structure Of P110beta In Complex With Icsh2		6e-07
2x6f_A	696	The Crystal Structure Of The Drosophila Class Iii P		1e-06
4ajw_A	934	Discovery And Optimization Of New Benzimidazole- An		9e-06
2wxf_A	940	The Crystal Structure Of The Murine Class Ia Pi 3-K		9e-06
3zim_A	940	Discovery Of A Potent And Isoform-selective Targete		3e-05
3hhm_A	1091	Crystal Structure Of P110alpha H1047r Mutant In Com		3e-05
4a55_A	1096	Crystal Structure Of P110alpha In Complex With Ish2		4e-05
2rd0_A	1096	Structure Of A Human P110alpha/p85alpha Complex Len		4e-05
3hiz_A	1096	Crystal Structure Of P110alpha H1047r Mutant In Com		4e-05

>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex Length = 965

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 785 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 843
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 844 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 875

>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941 Length = 960

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 786 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 844
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 845 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 876

>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In Complex With Organoruthenium Inhibitor E5e2 Length = 966

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 786 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 844
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 845 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 876

>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A Pyridyl- Triazine Inhibitor Length = 959

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 785 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 843
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 844 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 875

>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor Length = 959

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 785 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 843
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 844 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 875

>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin And Staurosporine Length = 966

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 786 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 844
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 845 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 876

>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And -Pyridine Inhibitors Of Pi3-Kinase Length = 954

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 782 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 840
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 841 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 872

>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1 Length = 960

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 786 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 844
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 845 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 876

>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With Ch5132799 Length = 966

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 792 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 850
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 851 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 882

>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 790 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 848
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 849 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 880

>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors. Length = 980

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 790 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 848
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 849 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 880

>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor Length = 966

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 786 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKSFLGINKERVPFV 844
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 845 LTPDFLFV---MGTSGKKT-SPHFQKFQDVCVKAYL 876

>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase Enzymatic Mechanism And Signalling Length = 961

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ ++TG    IDFG+  G     L I  E +PF 
Sbjct: 787 FVYSCAGYCVATFVLGIGDRHNDNIMI-SETGNLFHIDFGHILGNYKSFLGINKERVPFV 845
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+  + H  +   +  K++L
Sbjct: 846 LTPDFLFV---MGTSGKKTSL-HFQKFQDVCVKAYL 877

>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFR 80
           FV S A  C+A + LGIGDRH +N ++ T+TG    IDFG+  G     L I  E +PF 
Sbjct: 790 FVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHINGNYKSFLGINKERVPFV 848
Query: 81  LTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKSFL 116
           LTP  L V    G+ GK+    H  +   +  K++L
Sbjct: 849 LTPDFLFV---MGTSGKKT-SPHFQKFQDICVKAYL 880

>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure Length = 600

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 20  NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG 65
           + +V+S A  C+  Y LG+GDRHL+N L+ TKTG+   IDFGY  G
Sbjct: 444 DTYVKSCAGYCVITYILGVGDRHLDN-LLLTKTGKLFHIDFGYILG 488

>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4- Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol Length = 614

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 20  NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG 65
           + +V+S A  C+  Y LG+GDRHL+N L+ TKTG+   IDFGY  G
Sbjct: 458 DTYVKSCAGYCVITYILGVGDRHLDN-LLLTKTGKLFHIDFGYILG 502

>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 1092

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-E 75
           R    F  S A  C+A Y LGIGDRH +N +V  KTG+   IDFG+  G       I  E
Sbjct: 918 RAIEEFTLSCAGYCVASYVLGIGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRE 976
Query: 76  LMPFRLTPHILAV 88
            +PF LT   + V
Sbjct: 977 RVPFILTYDFIHV 989

>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii Pi3-Kinase Vps34 In Complex With 3-Methyladenine Length = 696

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 20  NNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG 65
           + +++S A  C+  Y LG+GDRHL+N L+ T  G+   IDFGY  G
Sbjct: 532 DTYIKSCAGYCVITYLLGVGDRHLDNLLLTT-NGKLFHIDFGYILG 576

>pdb|4AJW|A Chain A, Discovery And Optimization Of New Benzimidazole- And Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors For The Treatment Of Phosphatase And Tensin Homologue (Pten)-Deficient Cancers Length = 934

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG-VATQLLPIPE 75
           R    F  S A  C+A Y LGIGDRH +N ++  ++G+   IDFG+  G   T+     E
Sbjct: 760 RAIEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRE 818
Query: 76  LMPFRLT 82
            +PF LT
Sbjct: 819 RVPFILT 825

>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase P110delta In Complex With Pik-39. Length = 940

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFG-VATQLLPIPE 75
           R    F  S A  C+A Y LGIGDRH +N ++  ++G+   IDFG+  G   T+     E
Sbjct: 766 RAIEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRE 824
Query: 76  LMPFRLT 82
            +PF LT
Sbjct: 825 RVPFILT 831

>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted Covalent Inhibitor Of The Lipid Kinase Pi3kalpha Length = 940

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 791 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 849
Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 850 LTQDFLIV 857

>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 1091

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 920 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 978
Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 979 LTQDFLIV 986

>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of P85alpha And The Inhibitor Pik-108 Length = 1096

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 984 LTQDFLIV 991

>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex Length = 1096

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 984 LTQDFLIV 991

>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha Length = 1096

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 22  FVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFR 80
           F RS A  C+A + LGIGDRH  N +V    G+   IDFG+      +      E +PF 
Sbjct: 925 FTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 983
Query: 81  LTPHILAV 88
           LT   L V
Sbjct: 984 LTQDFLIV 991

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	6e-14
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	2e-13
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	6e-13
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	9e-13
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	1e-12
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	2e-12

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* Length = 940

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELM 77
              F  S A  C+A Y LGIGDRH +N ++  ++G+   IDFG+  G       I  E +
Sbjct: 768 IEEFTLSCAGYCVATYVLGIGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERV 826

Query: 78  PFRLTPHILAVNEPYGSQG 96
           PF LT   + V +   +  
Sbjct: 827 PFILTYDFVHVIQQGKTNN 845

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* Length = 696

 Score = 64.5 bits (156), Expect = 6e-13
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL 76
            + + +++S A  C+  Y LG+GDRHL+N L+ T  G+   IDFGY  G      P P  
Sbjct: 529 EVMDTYIKSCAGYCVITYLLGVGDRHLDNLLL-TTNGKLFHIDFGYILGRD----PKPMP 583

Query: 77  MPFRLTPHILAV 88
            P +L+  ++  
Sbjct: 584 PPMKLSKEMVEA 595

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A Length = 1091

 Score = 64.1 bits (155), Expect = 9e-13
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVA-TQLLPIPELM 77
            + F RS A  C+A + LGIGDRH  N +V    G+   IDFG+       +     E +
Sbjct: 917 IDLFTRSCAGYCVATFILGIGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERV 975

Query: 78  PFRLTPHILAV 88
           PF LT   L V
Sbjct: 976 PFVLTQDFLIV 986

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A Length = 614

 Score = 63.7 bits (154), Expect = 1e-12
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 17  RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL 76
            + + +V+S A  C+  Y LG+GDRHL+N L+ TKTG+   IDFGY  G      P P  
Sbjct: 455 EVMDTYVKSCAGYCVITYILGVGDRHLDNLLL-TKTGKLFHIDFGYILGRD----PKPLP 509

Query: 77  MPFRLTPHILAVNEPYGSQG----KRLWV-------RHLNEIDTLLS 112
            P +L   ++       S+     ++          R+ N I  L S
Sbjct: 510 PPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFS 556

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 1092

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 19  RNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELM 77
              F  S A  C+A Y LGIGDRH +N +V  KTG+   IDFG+  G       I  E +
Sbjct: 920 IEEFTLSCAGYCVASYVLGIGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRERV 978

Query: 78  PFRLTPHILAVNEPYGSQG 96
           PF LT   + V +   +  
Sbjct: 979 PFILTYDFIHVIQQGKTGN 997

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	100.0
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	100.0
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	100.0
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	100.0
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	100.0
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	91.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	85.86
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	83.34
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	83.16
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	81.99
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	81.91
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	81.34
3pls_A	298	Macrophage-stimulating protein receptor; protein k	80.59

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A

Probab=100.00  E-value=7e-40  Score=300.14  Aligned_cols=146  Identities=23%  Similarity=0.340  Sum_probs=132.2

Q ss_pred             hHHHhccCCCchHH----HHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCC
Q psy18027          2 REGLLSVAKSPMNR----VRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELM   77 (165)
Q Consensus         2 ~~~f~~~~~~~~~~----~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~v   77 (165)
                      .+||.+.+|++..+    +++|++|++|||+|||+|||||||||||+||||+ +||+++|||||++|++++    .||+|
T Consensus       436 ~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~p----~pe~v  510 (614)
T 3ls8_A          436 QNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRDP----KPLPP  510 (614)
T ss_dssp             HHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCCS----SSSCC
T ss_pred             HHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeeeccCCCCcceeEc-CCCCEeeeehHHhhccCC----CCCCC
Confidence            57999998887765    5899999999999999999999999999999999 899999999999999886    58999


Q ss_pred             CcccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhh---------hhccccCCCchh-----hhhhhhcceeeccchhhh
Q psy18027         78 PFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQK-----ILEQKQYLWFIQINVTAM  143 (165)
Q Consensus        78 PFRLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k-----~~~~~~~~~~~~~~~~~~  143 (165)
                      |||||++|+++||+.|++||..|+..|+.++.++|+         ++|+++++||++     .+..++.+|.++.++++|
T Consensus       511 PFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~~~il~l~~lM~~s~lp~~~~~~~~~i~~l~~rf~l~lse~ea  590 (614)
T 3ls8_A          511 PMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEA  590 (614)
T ss_dssp             SSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTTSCCHHHHTSGGGHHHHHHHHTTTTSCHHHH
T ss_pred             CeecCHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhcCCCCccccChHHHHHHHHHHcCCCCCHHHH
Confidence            999999999999999999999999999999999997         389999999974     355677899999999999


Q ss_pred             hhCCCCCcc
Q psy18027        144 SHQPKMKEP  152 (165)
Q Consensus       144 ~~yp~~~~~  152 (165)
                      ..|.++.+.
T Consensus       591 ~~~~~~lI~  599 (614)
T 3ls8_A          591 VHYMQSLID  599 (614)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988776554

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*

Probab=100.00  E-value=2.7e-38  Score=293.16  Aligned_cols=147  Identities=18%  Similarity=0.313  Sum_probs=132.6

Q ss_pred             ChHHHhccCCCchHHH----HHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCCCCC
Q psy18027          1 MREGLLSVAKSPMNRV----RLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPEL   76 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~----~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~   76 (165)
                      +.+||.+.+|++..|+    .+|++|++|||+|||+|||||||||||+||||+ +||+++|||||++|++++    .||+
T Consensus       509 l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~p----~pe~  583 (696)
T 2x6h_A          509 IHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT-TNGKLFHIDFGYILGRDP----KPMP  583 (696)
T ss_dssp             HHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-TTSCEEECCCCSCTTCCS----SSCC
T ss_pred             HHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-CCCCEEEEeehhhhccCC----CCcC
Confidence            3689999999988776    799999999999999999999999999999999 799999999999999886    4889


Q ss_pred             CCcccCHHHHHhhCCCCchhHHHHHHHHHHHHHHhhhh---------hccccCCCchhh-----hhhhhcceeeccchhh
Q psy18027         77 MPFRLTPHILAVNEPYGSQGKRLWVRHLNEIDTLLSKS---------FLLSVGVYNQKI-----LEQKQYLWFIQINVTA  142 (165)
Q Consensus        77 vPFRLT~~~~~~mg~~g~~g~~~~~~~~~~~~~~l~~~---------~~l~~~~~~~k~-----~~~~~~~~~~~~~~~~  142 (165)
                      ||||||++|+++||+.|++||..|+..|+.++.++|++         .|++.++||++.     ++.++.+|.+++++++
T Consensus       584 VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~~~i~~l~~rf~l~lseee  663 (696)
T 2x6h_A          584 PPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEE  663 (696)
T ss_dssp             CSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGGGHHHHHHHHHTTTSCHHH
T ss_pred             CCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999999999999999999999863         789999999863     4556789999999999


Q ss_pred             hhhCCCCCcc
Q psy18027        143 MSHQPKMKEP  152 (165)
Q Consensus       143 ~~~yp~~~~~  152 (165)
                      |..|.++.+.
T Consensus       664 a~~~~~~lI~  673 (696)
T 2x6h_A          664 AVQHLQSLLD  673 (696)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888766554

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=100.00  E-value=1.1e-37  Score=298.95  Aligned_cols=150  Identities=21%  Similarity=0.223  Sum_probs=123.6

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+||.+.+ +++.|+.+|++|++|||+|||+|||||||||||+||||+ +||+++|||||++||++++.+++ ||+|||
T Consensus       900 L~~~f~~~~-~~~~~~~ar~nF~~S~A~ysvv~YiLgigDRH~~NILid-~tG~v~HIDFG~~f~~~~~~~~~~~E~vPF  977 (1091)
T 3hhm_A          900 LHQWLKDKN-KGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPF  977 (1091)
T ss_dssp             HHHHHHTTS-CTTSHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEE-TTSCEEECCCCCCSCC------------CC
T ss_pred             HHHHHHhcC-ChHHHHHHHHHHHHHhhhhhheEEEEeecCCCCcceEEe-CCCCEEEEeehhhhccCCccCCCCcCCCCc
Confidence            467999988 677899999999999999999999999999999999999 69999999999999998777765 999999


Q ss_pred             ccCHHHHHhhCCC--C---chhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhh
Q psy18027         80 RLTPHILAVNEPY--G---SQGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTA  142 (165)
Q Consensus        80 RLT~~~~~~mg~~--g---~~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~  142 (165)
                      |||++|+++||+.  |   ++.|..|++.|+.++.++|+         ++|+++++||++..++   ++.+|.++.++++
T Consensus       978 rLT~~mv~vmg~G~~~~e~s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~~~i~~lr~rf~l~lseee 1057 (1091)
T 3hhm_A          978 VLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQE 1057 (1091)
T ss_dssp             CCCHHHHHHSSCSSSCCSSSHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSHHHHHHHHHHSCCSSCHHH
T ss_pred             eeHHHHHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCchHHHHHHHHHhCCCCCHHH
Confidence            9999999999653  3   67888999999999999997         3799999999975544   5689999999999


Q ss_pred             hhhCCCCCcc
Q psy18027        143 MSHQPKMKEP  152 (165)
Q Consensus       143 ~~~yp~~~~~  152 (165)
                      |..|.++.+-
T Consensus      1058 A~~~f~~~i~ 1067 (1091)
T 3hhm_A         1058 ALEYFMKQMN 1067 (1091)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=100.00  E-value=1.1e-36  Score=289.81  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=124.1

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |.+||.+.++ ++.|+.+|++|++|||+|||+|||||||||||+||||+ +||+++|||||++|+++++.+++ ||+|||
T Consensus       751 l~~~~~~~~~-~~~~~~a~~~F~~S~A~~Svv~YILGlgDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPF  828 (940)
T 2wxf_A          751 LLNWLKSKNP-GEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPF  828 (940)
T ss_dssp             HHHHHHHHSC-TTHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGEEEE-TTSCEEECCCCCCTTCC---------CCCC
T ss_pred             HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEe-cCCCEEEEeehhhhcccccccCCCCCCCCc
Confidence            3689999984 47888999999999999999999999999999999999 69999999999999998878887 999999


Q ss_pred             ccCHHHHHhhCCC--Cc-hhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhh
Q psy18027         80 RLTPHILAVNEPY--GS-QGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMS  144 (165)
Q Consensus        80 RLT~~~~~~mg~~--g~-~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~  144 (165)
                      |||++|+++||+.  |. +.|..|+..|+.++.++|+         +.|+.+++||++..++   ++.+|.++.++++|.
T Consensus       829 RLT~~mv~~mg~g~~~~s~~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~~~~i~~l~~r~~l~~se~ea~  908 (940)
T 2wxf_A          829 ILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEAL  908 (940)
T ss_dssp             CCCHHHHHHHTTTCSCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCSHHHHHHHHHHHTTTSCHHHHH
T ss_pred             cCCHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCchHHHHHHHHHhCCCCCHHHHH
Confidence            9999999999863  33 4567799999999999986         3789999999975544   457899999999998


Q ss_pred             hCCCCCcc
Q psy18027        145 HQPKMKEP  152 (165)
Q Consensus       145 ~yp~~~~~  152 (165)
                      .|.++.+.
T Consensus       909 ~~~~~~i~  916 (940)
T 2wxf_A          909 KHFRVKFN  916 (940)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777665

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=100.00  E-value=2.2e-36  Score=290.71  Aligned_cols=152  Identities=26%  Similarity=0.306  Sum_probs=131.4

Q ss_pred             ChHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceeEecCCCcEEeeecccccccccCCCCC-CCCCCc
Q psy18027          1 MREGLLSVAKSPMNRVRLRNNFVRSYACMCIAQYTLGIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPF   79 (165)
Q Consensus         1 L~~~f~~~~~~~~~~~~~r~~F~~SlA~~sv~~YiLgigDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~-~E~vPF   79 (165)
                      |++||.+.+ +++.|+.+|++|++|||+|||+|||||||||||+||||+ +||+++|||||++||++++.+++ ||+|||
T Consensus       903 L~~~~~~~~-~~~~~~~ar~nF~~SlA~ySvv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPF  980 (1092)
T 2y3a_A          903 LLNWLKEYN-SGDDLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVK-KTGQLFHIDFGHILGNFKSKFGIKRERVPF  980 (1092)
T ss_dssp             HHHHHHHHC-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTTEEEC-TTSCEEECCCSCCSSCCCCGGGCCCCCCCC
T ss_pred             HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEe-cCCCEEEEeehhhhhcCCccCCCCCCCCCc
Confidence            468999988 457888999999999999999999999999999999999 69999999999999998877876 999999


Q ss_pred             ccCHHHHHhhCCC--Cc-hhHHHHHHHHHHHHHHhhh---------hhccccCCCchhhhhh---hhcceeeccchhhhh
Q psy18027         80 RLTPHILAVNEPY--GS-QGKRLWVRHLNEIDTLLSK---------SFLLSVGVYNQKILEQ---KQYLWFIQINVTAMS  144 (165)
Q Consensus        80 RLT~~~~~~mg~~--g~-~g~~~~~~~~~~~~~~l~~---------~~~l~~~~~~~k~~~~---~~~~~~~~~~~~~~~  144 (165)
                      |||++|+++||+.  |. +.|..|+..|+.++.++|+         +.|+.+++||++..++   ++.+|.++.++++|.
T Consensus       981 RLT~~mv~~mg~g~~~~s~~fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~~~~i~~lr~rf~l~~seeeA~ 1060 (1092)
T 2y3a_A          981 ILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEAL 1060 (1092)
T ss_dssp             CCCHHHHHHHHTTCSSCSSSTTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSSHHHHHHHHHHTTCSSCHHHHH
T ss_pred             cCCHHHHHHHccCCCCCCcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCccccchhHHHHHHHhhCCCCCHHHHH
Confidence            9999999999753  33 3455689999999999986         3789999999976544   457999999999999


Q ss_pred             hCCCCCcccc
Q psy18027        145 HQPKMKEPII  154 (165)
Q Consensus       145 ~yp~~~~~~~  154 (165)
                      .|.++.+...
T Consensus      1061 ~~~~~~I~~s 1070 (1092)
T 2y3a_A         1061 KQFKQKFDEA 1070 (1092)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776633

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=91.00  E-value=0.28  Score=38.77  Aligned_cols=27  Identities=19%  Similarity=0.116  Sum_probs=23.9

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGV   66 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~   66 (165)
                      +|=+|+||+++ .+|.+.=+|||.+-..
T Consensus       188 ~Dlkp~NIll~-~~~~~kL~DfG~a~~~  214 (332)
T 3qd2_B          188 RDLKPSNIFFT-MDDVVKVGDFGLVTAM  214 (332)
T ss_dssp             CCCCGGGEEEC-TTCCEEECCCTTCEEC
T ss_pred             cCCCcccEEEe-CCCCEEEeecCccccc
Confidence            79999999999 7899999999987543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=85.86  E-value=1.2  Score=34.55  Aligned_cols=28  Identities=32%  Similarity=0.221  Sum_probs=24.1

Q ss_pred             ccCCCCCceeEecCCCcEEeeecccccc
Q psy18027         38 IGDRHLENTLVCTKTGRCVGIDFGYSFG   65 (165)
Q Consensus        38 igDRH~~Nili~~~tG~v~hIDFg~~f~   65 (165)
                      -+|=.|+||+++..+|.+.-+|||..-.
T Consensus       145 H~dl~p~Nil~~~~~~~~kl~Dfg~~~~  172 (295)
T 2clq_A          145 HRDIKGDNVLINTYSGVLKISDFGTSKR  172 (295)
T ss_dssp             CCCCSGGGEEEETTTCCEEECCTTTCEE
T ss_pred             ccCCChhhEEEECCCCCEEEeecccccc
Confidence            3789999999996699999999998753

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=83.34  E-value=1.5  Score=35.70  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             cCCCCCceeEecCCCcEEeeecccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYS   63 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~   63 (165)
                      .|=-|+|||++ .+|++-=+|||.+
T Consensus       142 RDlKp~NILl~-~~~~vKl~DFGla  165 (299)
T 4g31_A          142 RDLKPSNIFFT-MDDVVKVGDFGLV  165 (299)
T ss_dssp             CCCCGGGEEEC-TTCCEEECCCCCC
T ss_pred             ccCcHHHeEEC-CCCcEEEccCccc
Confidence            46689999999 7899999999986

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=83.16  E-value=1.3  Score=34.75  Aligned_cols=26  Identities=23%  Similarity=0.111  Sum_probs=23.3

Q ss_pred             ccCCCCCceeEecCCCcEEeeeccccc
Q psy18027         38 IGDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        38 igDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      -+|=+|+||+++ .+|++.-+|||..-
T Consensus       156 H~dlkp~Nili~-~~~~~kl~Dfg~~~  181 (307)
T 2nru_A          156 HRDIKSANILLD-EAFTAKISDFGLAR  181 (307)
T ss_dssp             CSCCCGGGEEEC-TTCCEEECCCTTCE
T ss_pred             cCCCCHHHEEEc-CCCcEEEeeccccc
Confidence            479999999999 89999999999864

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=81.99  E-value=6.5  Score=30.76  Aligned_cols=49  Identities=20%  Similarity=0.130  Sum_probs=32.3

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcccCHHHHH
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILA   87 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFRLT~~~~~   87 (165)
                      ||=+|+||+++..+|.+.-+|||..-.............|.=..|+...
T Consensus       163 ~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~  211 (312)
T 2iwi_A          163 RDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWIS  211 (312)
T ss_dssp             CCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHH
T ss_pred             cCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeee
Confidence            7999999999978999999999986543322221122234445666543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=81.91  E-value=1.1  Score=34.70  Aligned_cols=47  Identities=23%  Similarity=0.176  Sum_probs=29.1

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcccCHHHH
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHIL   86 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFRLT~~~~   86 (165)
                      ||=+|+||+++ .+|++.-+|||................|.=..|++.
T Consensus       133 ~dlkp~Nili~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~  179 (279)
T 3fdn_A          133 RDIKPENLLLG-SAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMI  179 (279)
T ss_dssp             CCCCGGGEEEC-TTSCEEECSCCEESCC--------CCCCTTCCHHHH
T ss_pred             ccCChHhEEEc-CCCCEEEEeccccccCCcccccccCCCCCccCHhHh
Confidence            78999999999 899999999997754332211111122333566664

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=81.34  E-value=0.64  Score=38.32  Aligned_cols=48  Identities=29%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccccccC-CCCCCCCCCcccCHHHHH
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGVATQ-LLPIPELMPFRLTPHILA   87 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~~~~-~l~~~E~vPFRLT~~~~~   87 (165)
                      +|=+|+||+++ .+|++.-+|||..-..... .....--.|.=..|++..
T Consensus       224 ~Dlkp~NIl~~-~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~  272 (365)
T 2y7j_A          224 RDLKPENILLD-DNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILK  272 (365)
T ss_dssp             SCCSGGGEEEC-TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHH
T ss_pred             CCCCHHHEEEC-CCCCEEEEecCcccccCCCcccccCCCCCCccChhhcc
Confidence            79999999999 8999999999976533221 111111234445677654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=80.59  E-value=2.8  Score=32.43  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      +|=.|+||+++ .+|++.=+|||..-
T Consensus       148 ~dikp~Nili~-~~~~~kl~Dfg~~~  172 (298)
T 3pls_A          148 RDLAARNCMLD-ESFTVKVADFGLAR  172 (298)
T ss_dssp             SCCSGGGEEEC-TTCCEEECCTTSSC
T ss_pred             CCCCcceEEEc-CCCcEEeCcCCCcc
Confidence            78999999999 89999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1e7ua4	369	d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (P	2e-16

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1e7ua4	369	Phoshoinositide 3-kinase (PI3K), catalytic domain	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	88.46
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	80.21

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.46  E-value=0.1  Score=37.43  Aligned_cols=24  Identities=38%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             cCCCCCceeEecCCCcEEeeeccccc
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSF   64 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f   64 (165)
                      +|=+|+|||++ + +.+.=||||.+-
T Consensus       127 rDiKP~NILv~-~-~~~~liDFG~a~  150 (191)
T d1zara2         127 GDLSQYNVLVS-E-EGIWIIDFPQSV  150 (191)
T ss_dssp             SCCSTTSEEEE-T-TEEEECCCTTCE
T ss_pred             ccCChhheeee-C-CCEEEEECCCcc
Confidence            79999999998 4 457789999653

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.21  E-value=0.94  Score=34.09  Aligned_cols=49  Identities=20%  Similarity=0.129  Sum_probs=31.7

Q ss_pred             cCCCCCceeEecCCCcEEeeecccccccccCCCCCCCCCCcccCHHHHH
Q psy18027         39 GDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILA   87 (165)
Q Consensus        39 gDRH~~Nili~~~tG~v~hIDFg~~f~~~~~~l~~~E~vPFRLT~~~~~   87 (165)
                      +|=.|+|||++.++|.+.-+|||.+--..........-.|.=..|++..
T Consensus       134 rDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~  182 (273)
T d1xwsa_         134 RDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIR  182 (273)
T ss_dssp             SCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHH
T ss_pred             ccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHc
Confidence            5778999999977799999999987432221211112234555677654