Psyllid ID: psy18070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKFLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEEcccccEEEEEcHHHHHHHHHHHHHccccccEEEccEEEEEEEEccHHHHHHHHccccccccccccEEEEEEccccHHHHcccccccEEEEcccccccHHccccccccEEEEcccccccEEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccHHcccEEEcccccEEEEEEEEHHcccccEccHHHHHHHHHHHHHHHcccccEEccEEEEEEEcccHHHHHHHccccccccccccEEEEEEEccccHHHHHcccHHcccccccEEEEEccEEccccHHHHHHHccccccccHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSLTGIMVKfgnsggplvnldgeviginsmkvtagisfaIPIDYAIEFLTnykrkdidrtithKKYIGITMLTLNEKLIEQLRrdrhipydlthGVLIWRVMYNSPAYFIKFRtsagikptssrlLGECLAQYTTSKLVVWsinhpsitCHILLRLYLLVCSELTKFLS
Flexible Loop (DISEMBL)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTnykrkdidrtithkkyigitMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKFLS
Low Complexity Region (SEG)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKFLS
Disordered region (IsUnstruct)
****GIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKF**
Disordered Region (DISOPRED)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK****TITHKKYIGITMLTLNEKLI***********DLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS***V********TCHILLRLYLLVCSE******
Disordered Region (DISEMBL)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKFLS
Disordered Region (DISPRO)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSEL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSELTKFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
B4HEM8	422	Serine protease HTRA2, mi	N/A	N/A	0.656	0.263	0.536	6e-27
Q9VFJ3	422	Serine protease HTRA2, mi	yes	N/A	0.656	0.263	0.536	6e-27
B3P3J9	422	Serine protease HTRA2, mi	N/A	N/A	0.656	0.263	0.536	7e-27
B4QZU6	422	Serine protease HTRA2, mi	N/A	N/A	0.656	0.263	0.536	8e-27
B4PST0	422	Serine protease HTRA2, mi	N/A	N/A	0.656	0.263	0.536	1e-26
B3LVG7	426	Serine protease HTRA2, mi	N/A	N/A	0.656	0.260	0.528	2e-26
Q297U2	427	Serine protease HTRA2, mi	yes	N/A	0.656	0.259	0.520	6e-26
B4G316	427	Serine protease HTRA2, mi	N/A	N/A	0.656	0.259	0.520	7e-26
B4K835	430	Serine protease HTRA2, mi	N/A	N/A	0.656	0.258	0.520	7e-26
B4JTT7	426	Serine protease HTRA2, mi	N/A	N/A	0.656	0.260	0.520	7e-26

>sp|B4HEM8|HTRA2_DROSE Serine protease HTRA2, mitochondrial OS=Drosophila sechellia GN=HtrA2 PE=3 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.
Drosophila sechellia (taxid: 7238)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 8

>sp|Q9VFJ3|HTRA2_DROME Serine protease HTRA2, mitochondrial OS=Drosophila melanogaster GN=HtrA2 PE=1 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B3P3J9|HTRA2_DROER Serine protease HTRA2, mitochondrial OS=Drosophila erecta GN=HtrA2 PE=3 SV=1

 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila erecta (taxid: 7220)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B4QZU6|HTRA2_DROSI Serine protease HTRA2, mitochondrial OS=Drosophila simulans GN=HtrA2 PE=3 SV=1

 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPNNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila simulans (taxid: 7240)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B4PST0|HTRA2_DROYA Serine protease HTRA2, mitochondrial OS=Drosophila yakuba GN=HtrA2 PE=3 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P  LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSHLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila yakuba (taxid: 7245)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B3LVG7|HTRA2_DROAN Serine protease HTRA2, mitochondrial OS=Drosophila ananassae GN=HtrA2 PE=3 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     +RK      
Sbjct: 261 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAERRKKGAAYK 320

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 321 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 374

Query: 118 IKP 120
           ++P
Sbjct: 375 LQP 377

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila ananassae (taxid: 7217)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|Q297U2|HTRA2_DROPS Serine protease HTRA2, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=HtrA2 PE=3 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     +RK      
Sbjct: 262 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAERRKKGSAHK 321

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +L HGVL+W+V+  SPA+      S G
Sbjct: 322 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPNNLMHGVLVWKVIVGSPAH------SGG 375

Query: 118 IKP 120
           ++P
Sbjct: 376 LQP 378

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B4G316|HTRA2_DROPE Serine protease HTRA2, mitochondrial OS=Drosophila persimilis GN=HtrA2 PE=3 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     +RK      
Sbjct: 262 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAERRKKGSAHK 321

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +L HGVL+W+V+  SPA+      S G
Sbjct: 322 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPNNLMHGVLVWKVIVGSPAH------SGG 375

Query: 118 IKP 120
           ++P
Sbjct: 376 LQP 378

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila persimilis (taxid: 7234)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B4K835|HTRA2_DROMO Serine protease HTRA2, mitochondrial OS=Drosophila mojavensis GN=HtrA2 PE=3 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTN--YKRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     +RK      
Sbjct: 265 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAARRKKGSAYK 324

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P  L+HGVL+W+V+  SPA+      S G
Sbjct: 325 TGYPVKRYMGITMLTLTPDILFELKSRTQNMPNTLSHGVLVWKVIVGSPAH------SGG 378

Query: 118 IKP 120
           ++P
Sbjct: 379 LQP 381

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila mojavensis (taxid: 7230)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

>sp|B4JTT7|HTRA2_DROGR Serine protease HTRA2, mitochondrial OS=Drosophila grimshawi GN=HtrA2 PE=3 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTN--YKRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     +RK      
Sbjct: 261 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKLFLERAAARRKKGSAYK 320

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P  L+HGVL+W+V+  SPA+      S G
Sbjct: 321 TGYPVKRYMGITMLTLTPDILFELKSRTQNMPETLSHGVLVWKVIVGSPAH------SGG 374

Query: 118 IKP 120
           ++P
Sbjct: 375 LQP 377

Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.

Drosophila grimshawi (taxid: 7222)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
427793951	484	Putative serine protease, partial [Rhipi	0.650	0.227	0.550	2e-26
156543818	430	PREDICTED: serine protease HTRA2, mitoch	0.656	0.258	0.503	3e-26
346467135	465	hypothetical protein [Amblyomma maculatu	0.650	0.236	0.525	6e-26
24646839	422	HtrA2, isoform A [Drosophila melanogaste	0.656	0.263	0.536	3e-25
195328999	422	GM25850 [Drosophila sechellia] gi|257096	0.656	0.263	0.536	3e-25
194900772	422	GG21285 [Drosophila erecta] gi|257096534	0.656	0.263	0.536	3e-25
325197114	579	high temperature requirement protein A2	0.639	0.186	0.516	4e-25
195570898	422	GD20417 [Drosophila simulans] gi|2570965	0.656	0.263	0.536	4e-25
442753305	429	Putative serine protease [Ixodes ricinus	0.650	0.256	0.512	5e-25
195501602	422	GE26447 [Drosophila yakuba] gi|257096542	0.656	0.263	0.536	7e-25

>gi|427793951|gb|JAA62427.1| Putative serine protease, partial [Rhipicephalus pulchellus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 80/118 (67%), Gaps = 8/118 (6%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITH 63
           T   + FGNSGGPL+NLDG VIGIN+MKVTAGISFAIP DYA+ FL    +K  + T   
Sbjct: 329 TDAAINFGNSGGPLINLDGNVIGINTMKVTAGISFAIPADYAMNFLEEASKKSQEETSAD 388

Query: 64  KKYIGITMLTLNEKLIEQL-RRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           + Y+GITMLTL   LI +L +RD   P+ +T GVL+WRVM  SPA        AG++P
Sbjct: 389 RWYLGITMLTLTPSLILELQQRDPMFPH-VTSGVLVWRVMLGSPANL------AGLQP 439

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543818|ref|XP_001606558.1| PREDICTED: serine protease HTRA2, mitochondrial-like isoform 1 [Nasonia vitripennis] gi|345495752|ref|XP_003427567.1| PREDICTED: serine protease HTRA2, mitochondrial-like isoform 2 [Nasonia vitripennis]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 82/127 (64%), Gaps = 16/127 (12%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTIT- 62
           T   + FGNSGGPLVNLDGE IGIN+MKVTAGISFAIPIDYA +FL   + +  ++  T 
Sbjct: 262 TDAAITFGNSGGPLVNLDGEAIGINAMKVTAGISFAIPIDYAKDFLKKAEERKKNKGATM 321

Query: 63  --------HKKYIGITMLTLNEKLIEQLRRD-RHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
                    ++Y+GITMLTL   +I  +++    +P  + HGVLIWRVM+ SPAY     
Sbjct: 322 TGGMREYGRRRYLGITMLTLTPDIISDMQQQGGFVPSIIRHGVLIWRVMFGSPAYV---- 377

Query: 114 TSAGIKP 120
              G+KP
Sbjct: 378 --GGLKP 382

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346467135|gb|AEO33412.1| hypothetical protein [Amblyomma maculatum]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 79/118 (66%), Gaps = 8/118 (6%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITH 63
           T   + FGNSGGPL+NLDG VIGIN+MKVTAGISFAIP DYA+ FL    ++  +     
Sbjct: 310 TDAAINFGNSGGPLINLDGNVIGINTMKVTAGISFAIPADYALNFLQEASKRSQEEASAE 369

Query: 64  KKYIGITMLTLNEKLIEQL-RRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           + Y+GITMLTL   LI +L +RD   P+ +T GVL+W+VM  SPA        AG++P
Sbjct: 370 RWYLGITMLTLTPSLIMELQQRDAMFPH-VTSGVLVWKVMLGSPANL------AGLQP 420

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24646839|ref|NP_650366.1| HtrA2, isoform A [Drosophila melanogaster] gi|442619055|ref|NP_001262565.1| HtrA2, isoform B [Drosophila melanogaster] gi|74868824|sp|Q9VFJ3.1|HTRA2_DROME RecName: Full=Serine protease HTRA2, mitochondrial; AltName: Full=High temperature requirement protein A2; Short=DmHtrA2; Short=HtrA2; AltName: Full=Omi stress-regulated endoprotease; Short=dOmi; Contains: RecName: Full=Serine protease HTRA2, mitochondrial, long; Contains: RecName: Full=Serine protease HTRA2, mitochondrial, short; Flags: Precursor gi|7299887|gb|AAF55062.1| HtrA2, isoform A [Drosophila melanogaster] gi|18446965|gb|AAL68074.1| AT14262p [Drosophila melanogaster] gi|84458465|dbj|BAE72064.1| HtrA2 [Drosophila melanogaster] gi|220949862|gb|ACL87474.1| HtrA2-PA [synthetic construct] gi|440217419|gb|AGB95946.1| HtrA2, isoform B [Drosophila melanogaster]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195328999|ref|XP_002031199.1| GM25850 [Drosophila sechellia] gi|257096538|sp|B4HEM8.1|HTRA2_DROSE RecName: Full=Serine protease HTRA2, mitochondrial; AltName: Full=High temperature requirement protein A2; Flags: Precursor gi|194120142|gb|EDW42185.1| GM25850 [Drosophila sechellia]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900772|ref|XP_001979929.1| GG21285 [Drosophila erecta] gi|257096534|sp|B3P3J9.1|HTRA2_DROER RecName: Full=Serine protease HTRA2, mitochondrial; AltName: Full=High temperature requirement protein A2; Flags: Precursor gi|190651632|gb|EDV48887.1| GG21285 [Drosophila erecta]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325197114|ref|NP_001191410.1| high temperature requirement protein A2 [Bombyx mori] gi|304421446|gb|ADM32522.1| htra2 [Bombyx mori]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 10/118 (8%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITH 63
           T   + FGNSGGPLVNLDGE IGINSMKVT GISFAIPIDY  EFL  +K K        
Sbjct: 422 TDAPITFGNSGGPLVNLDGEAIGINSMKVTYGISFAIPIDYVKEFLAKHKTKSPQ---VS 478

Query: 64  KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           K+Y+GITML+L   ++ +L+ R+  +P D+ HG+L+W+V+  SPA+      + G++P
Sbjct: 479 KRYLGITMLSLTPSILMELKMRNPEMPTDIQHGILVWKVIIGSPAF------NGGLQP 530

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570898|ref|XP_002103441.1| GD20417 [Drosophila simulans] gi|257096539|sp|B4QZU6.1|HTRA2_DROSI RecName: Full=Serine protease HTRA2, mitochondrial; AltName: Full=High temperature requirement protein A2; Flags: Precursor gi|194199368|gb|EDX12944.1| GD20417 [Drosophila simulans]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 84/123 (68%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPNNLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442753305|gb|JAA68812.1| Putative serine protease [Ixodes ricinus]

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 11/121 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK---DIDRT 60
           T   + FGNSGGPL+NLDG+VIGIN+MKVT+GISFAIP DYA++FL    +K   D    
Sbjct: 271 TDAAINFGNSGGPLINLDGKVIGINTMKVTSGISFAIPADYALDFLETSAKKLKEDPSSA 330

Query: 61  ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
            + + Y+GITMLTL   LI++L+ RD   P +++ GVL+WRV+  SPA        AG++
Sbjct: 331 TSERWYLGITMLTLTPSLIQELQERDPMFP-NVSSGVLVWRVVLGSPANL------AGLQ 383

Query: 120 P 120
           P
Sbjct: 384 P 384

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195501602|ref|XP_002097864.1| GE26447 [Drosophila yakuba] gi|257096542|sp|B4PST0.1|HTRA2_DROYA RecName: Full=Serine protease HTRA2, mitochondrial; AltName: Full=High temperature requirement protein A2; Flags: Precursor gi|194183965|gb|EDW97576.1| GE26447 [Drosophila yakuba]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 83/123 (67%), Gaps = 12/123 (9%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
           T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct: 257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query: 62  TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
           T    K+Y+GITMLTL   ++ +L+ R +++P  LTHGVL+W+V+  SPA+      S G
Sbjct: 317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSHLTHGVLVWKVIVGSPAH------SGG 370

Query: 118 IKP 120
           ++P
Sbjct: 371 LQP 373

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
FB|FBgn0038233	422	HtrA2 "HtrA2" [Drosophila mela	0.656	0.263	0.536	8.4e-26
ZFIN|ZDB-GENE-071004-51	268	zgc:173425 "zgc:173425" [Danio	0.650	0.410	0.528	1.1e-23
UNIPROTKB|F1SNV6	199	LOC100512831 "Uncharacterized	0.721	0.613	0.481	1.4e-23
UNIPROTKB|I3LLY6	410	LOC100628090 "Uncharacterized	0.721	0.297	0.481	1.8e-23
ZFIN|ZDB-GENE-041008-120	266	zgc:162975 "zgc:162975" [Danio	0.650	0.413	0.537	2.3e-23
ZFIN|ZDB-GENE-081028-23	200	si:dkey-19p15.4 "si:dkey-19p15	0.650	0.55	0.528	2.9e-23
ZFIN|ZDB-GENE-081028-28	200	si:dkey-112g5.14 "si:dkey-112g	0.650	0.55	0.537	3.8e-23
ZFIN|ZDB-GENE-091113-12	214	si:dkey-84o3.8 "si:dkey-84o3.8	0.650	0.514	0.537	3.8e-23
ZFIN|ZDB-GENE-091113-19	209	si:dkey-84o3.2 "si:dkey-84o3.2	0.650	0.526	0.537	3.8e-23
ZFIN|ZDB-GENE-091113-21	223	si:dkey-84o3.3 "si:dkey-84o3.3	0.650	0.493	0.537	3.8e-23

FB|FBgn0038233 HtrA2 "HtrA2" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 66/123 (53%), Positives = 84/123 (68%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKDIDRTI 61
             T   + FGNSGGPLVNLDGE IG+NSMKVTAGISFAIPIDY   FL     KRK      
Sbjct:   257 TDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKVFLERAAEKRKKGSAYK 316

Query:    62 TH---KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG 117
             T    K+Y+GITMLTL   ++ +L+ R +++P +LTHGVL+W+V+  SPA+      S G
Sbjct:   317 TGYPVKRYMGITMLTLTPDILFELKSRSQNMPSNLTHGVLVWKVIVGSPAH------SGG 370

Query:   118 IKP 120
             ++P
Sbjct:   371 LQP 373

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0048749 "compound eye development" evidence=IGI

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

ZFIN|ZDB-GENE-071004-51 zgc:173425 "zgc:173425" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 64/121 (52%), Positives = 80/121 (66%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFL---TNYKRKDIDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL    N ++     +
Sbjct:   106 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLDRSANKQKSWFGES 165

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
              + ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:   166 GSKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 218

Query:   120 P 120
             P
Sbjct:   219 P 219

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SNV6 LOC100512831 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 64/133 (48%), Positives = 88/133 (66%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD--IDRTI 61
             T   + FGNSGGPLVNLDGEVIG+N+MKVTAGISFAIP D   EFL   ++K+     + 
Sbjct:    38 TDAAIDFGNSGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLRRGEKKNSWFGNSG 97

Query:    62 THKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
             + ++YIG+ MLTL   ++ +L+ R+   P D+ HGVLI +V+ +SPA+       AG++P
Sbjct:    98 SQRRYIGVMMLTLTPSILAELQLREPSFP-DVQHGVLIHKVILDSPAH------RAGLRP 150

Query:   121 TSSRL-LGECLAQ 132
                 L +GE L Q
Sbjct:   151 GDVILAIGEQLVQ 163

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|I3LLY6 LOC100628090 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 64/133 (48%), Positives = 88/133 (66%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD--IDRTI 61
             T   + FGNSGGPLVNLDGEVIG+N+MKVTAGISFAIP D   EFL   ++K+     + 
Sbjct:   249 TDAAIDFGNSGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLRRGEKKNSWFGNSG 308

Query:    62 THKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
             + ++YIG+ MLTL   ++ +L+ R+   P D+ HGVLI +V+ +SPA+       AG++P
Sbjct:   309 SQRRYIGVMMLTLTPSILAELQLREPSFP-DVQHGVLIHKVILDSPAH------RAGLRP 361

Query:   121 TSSRL-LGECLAQ 132
                 L +GE L Q
Sbjct:   362 GDVILAIGEQLVQ 374

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-041008-120 zgc:162975 "zgc:162975" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 65/121 (53%), Positives = 79/121 (65%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKD-IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K+K     +
Sbjct:   104 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVCLFLDRSADKQKSWFGES 163

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
                ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:   164 GWKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 216

Query:   120 P 120
             P
Sbjct:   217 P 217

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-081028-23 si:dkey-19p15.4 "si:dkey-19p15.4" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 64/121 (52%), Positives = 78/121 (64%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD---IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K       +
Sbjct:    38 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLDRSADKQNTWFGES 97

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
              + ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:    98 GSKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 150

Query:   120 P 120
             P
Sbjct:   151 P 151

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-081028-28 si:dkey-112g5.14 "si:dkey-112g5.14" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 65/121 (53%), Positives = 79/121 (65%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKD-IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K+K     +
Sbjct:    38 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLDRSADKQKSWFGES 97

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
                ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:    98 GWKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 150

Query:   120 P 120
             P
Sbjct:   151 P 151

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-091113-12 si:dkey-84o3.8 "si:dkey-84o3.8" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 65/121 (53%), Positives = 79/121 (65%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKD-IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K+K     +
Sbjct:    56 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLERSADKQKSWFGES 115

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
                ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:   116 GWKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 168

Query:   120 P 120
             P
Sbjct:   169 P 169

GO:0003824 "catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-091113-19 si:dkey-84o3.2 "si:dkey-84o3.2" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 65/121 (53%), Positives = 79/121 (65%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKD-IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K+K     +
Sbjct:    38 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLERSADKQKSWFGES 97

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
                ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:    98 GWKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 150

Query:   120 P 120
             P
Sbjct:   151 P 151

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-091113-21 si:dkey-84o3.3 "si:dkey-84o3.3" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 65/121 (53%), Positives = 79/121 (65%)

Query:     4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNY--KRKD-IDRT 60
             T   + FGNSGGPL+NLDGEVIGIN+MKVTAGISFAIP D    FL     K+K     +
Sbjct:    61 TDATIDFGNSGGPLINLDGEVIGINTMKVTAGISFAIPSDRVRLFLDRSADKQKSWFGES 120

Query:    61 ITHKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
                ++YIG+ MLTL   +IE+LR RD   P D++HGVLI RV+  SPA        AG+K
Sbjct:   121 GWKRRYIGVMMLTLTPSIIEELRMRDPSFP-DVSHGVLIHRVIVGSPA------NRAGMK 173

Query:   120 P 120
             P
Sbjct:   174 P 174

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VFJ3	HTRA2_DROME	3, ., 4, ., 2, 1, ., 1, 0, 8	0.5365	0.6568	0.2630	yes	N/A
Q297U2	HTRA2_DROPS	3, ., 4, ., 2, 1, ., 1, 0, 8	0.5203	0.6568	0.2599	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	169
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	4e-19
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	1e-13
TIGR02038	351	TIGR02038, protease_degS, periplasmic serine pepet	1e-08
PRK10942	473	PRK10942, PRK10942, serine endoprotease; Provision	2e-07
PRK10898	353	PRK10898, PRK10898, serine endoprotease; Provision	4e-07
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-06
PRK10139	455	PRK10139, PRK10139, serine endoprotease; Provision	7e-06
pfam13365	138	pfam13365, Trypsin_2, Trypsin-like peptidase domai	4e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	0.002
pfam10459	696	pfam10459, Peptidase_S46, Peptidase S46	0.003

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 82.6 bits (205), Expect = 4e-19
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 29/119 (24%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSGGPLVNL GEVIGIN+  ++      GI FAIP + A        +  +D+ I   K
Sbjct: 179 GNSGGPLVNLRGEVIGINTAILSPSGGNVGIGFAIPSNMA--------KNVVDQLIEGGK 230

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
               ++G+T+  +   L + L  ++        G L+ +V+  SPA        AG+K 
Sbjct: 231 VKRGWLGVTIQEVTSDLAKSLGLEK------QRGALVAQVLPGSPA------EKAGLKA 277

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 23/119 (19%)

Query: 7   MVKFGNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRKDIDRTI 61
            +  GNSGGPLVN+DGEV+GIN+  +     ++GI FAIP++     L     K      
Sbjct: 190 AINPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDELISKG----K 245

Query: 62  THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
             + Y+G+    L   +   L         +  G ++  V+  SPA        AGIK 
Sbjct: 246 VVRGYLGVIGEPLTADIALGL--------PVAAGAVVLGVLPGSPAA------KAGIKA 290

Length = 347

>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 11  GNSGGPLVNLDGEVIGINSMKV-------TAGISFAIPIDYAIEFLTNYKRKDIDRTITH 63
           GNSGG L+N +GE++GIN+            GI+FAIPI  A + +    R    R I  
Sbjct: 198 GNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRD--GRVI-- 253

Query: 64  KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPA 107
           + YIG++   +N  ++ Q      +      G++I  V  N PA
Sbjct: 254 RGYIGVSGEDIN-SVVAQGLGLPDL-----RGIVITGVDPNGPA 291

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E) [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 351

>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 29/118 (24%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTA---------GISFAIPIDYAIEFLTNYKRKDIDRTI 61
           GNSGG LVNL+GE+IGIN    TA         GI FAIP +     + N   + ++   
Sbjct: 233 GNSGGALVNLNGELIGIN----TAILAPDGGNIGIGFAIPSN----MVKNLTSQMVEYGQ 284

Query: 62  THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
             +  +GI    LN +L + ++       D   G  + +V+ NS A        AGIK
Sbjct: 285 VKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSA------AKAGIK 330

Length = 473

>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 11  GNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDRTIT 62
           GNSGG LVN  GE++GIN++        +   GI FAIP   A + +    R    R I 
Sbjct: 198 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRD--GRVI- 254

Query: 63  HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIK 119
            + YIGI       + I  L        D   G+++  V  + PA        AGI+
Sbjct: 255 -RGYIGIG-----GREIAPLHAQG-GGIDQLQGIVVNEVSPDGPAA------KAGIQ 298

Length = 353

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 10  FGNSGGPLVNLDGEVIGINSMK----VTAGISFAIPIDYAIEFL 49
            G+SGGPLV  DGE+IGI S               P+   ++++
Sbjct: 175 QGDSGGPLVCSDGELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 5/40 (12%)

Query: 11  GNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYA 45
           GNSGG L+NL+GE+IGIN+  +     + GI FAIP + A
Sbjct: 212 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 251

Length = 455

>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 11/17 (64%), Positives = 15/17 (88%)

Query: 11  GNSGGPLVNLDGEVIGI 27
           G+SGGP+ + DGEV+GI
Sbjct: 122 GSSGGPVFDADGEVVGI 138

This family includes trypsin like peptidase domains. Length = 138

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 12/55 (21%)

Query: 66  YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           ++G+T+  L   L E+L          T GVL+  V   SPA        AG+KP
Sbjct: 2   WLGVTVQDLTPDLAEEL------GLKDTKGVLVASVDPGSPAA------KAGLKP 44

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 11  GNSGGPLVNLDGEVIGIN 28
           GNSG P++N  GE++G+ 
Sbjct: 631 GNSGSPVLNGKGELVGLA 648

Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains. Length = 696

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PRK10139	455	serine endoprotease; Provisional	99.97
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.97
PRK10898	353	serine endoprotease; Provisional	99.97
PRK10942	473	serine endoprotease; Provisional	99.96
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.96
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	99.9
KOG1320|consensus	473		99.66
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.21
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.2
KOG1421|consensus	955		99.14
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.88
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.76
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.64
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.61
KOG1320|consensus	473		98.6
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.54
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.48
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.45
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.43
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.43
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.36
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.35
PRK10942	473	serine endoprotease; Provisional	98.25
PRK10139	455	serine endoprotease; Provisional	97.96
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.9
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.8
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.79
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.69
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.67
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.64
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.49
PF12812	78	PDZ_1: PDZ-like domain	97.46
KOG3553|consensus	124		97.46
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.18
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.17
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.1
PRK11186	667	carboxy-terminal protease; Provisional	97.06
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.99
PF10459	698	Peptidase_S46: Peptidase S46; InterPro: IPR019500	96.7
KOG3129|consensus	231		96.62
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.13
KOG3532|consensus	1051		96.05
PF00949	132	Peptidase_S7: Peptidase S7, Flavivirus NS3 serine	96.01
PF00944	158	Peptidase_S3: Alphavirus core protein ; InterPro:	95.41
KOG1421|consensus	955		95.18
PF05579	297	Peptidase_S32: Equine arteritis virus serine endop	94.86
PRK09681	276	putative type II secretion protein GspC; Provision	94.84
KOG3571|consensus	626		94.36
KOG3580|consensus	1027		93.77
KOG2921|consensus	484		93.03
KOG3605|consensus	829		92.29
KOG3550|consensus	207		92.02
KOG3580|consensus	1027		91.7
KOG3209|consensus	984		91.56
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	90.88
KOG3542|consensus	1283		90.61
KOG3834|consensus	462		90.15
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	89.83
PF02907	148	Peptidase_S29: Hepatitis C virus NS3 protease; Int	88.47
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	88.13
KOG3209|consensus	984		84.78
KOG0606|consensus	1205		83.37
KOG3651|consensus	429		81.01
COG3031	275	PulC Type II secretory pathway, component PulC [In	80.77

>PRK10139 serine endoprotease; Provisional

Probab=99.97  E-value=3.6e-31  Score=233.52  Aligned_cols=140  Identities=26%  Similarity=0.323  Sum_probs=122.9

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      +|||||+||||||||||+|.+||||||+++..+     +|++||||++.+++++++|+++|    ++.++|||+++++++
T Consensus       202 ~iqtda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g----~v~r~~LGv~~~~l~  277 (455)
T PRK10139        202 FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG----EIKRGLLGIKGTEMS  277 (455)
T ss_pred             EEEECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhhcC----cccccceeEEEEECC
Confidence            589999999999999999999999999999764     57999999999999999999999    899999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i  153 (169)
                      +++++.++++      ...|++|.+|.++|||+      ++|||+||+|+++++.++.+..++...  .......+.+.+
T Consensus       278 ~~~~~~lgl~------~~~Gv~V~~V~~~SpA~------~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V  345 (455)
T PRK10139        278 ADIAKAFNLD------VQRGAFVSEVLPNSGSA------KAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL  345 (455)
T ss_pred             HHHHHhcCCC------CCCceEEEEECCCChHH------HCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999884      23799999999999999      999999999999988887776655433  223445668888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      .|.
T Consensus       346 ~R~  348 (455)
T PRK10139        346 LRN  348 (455)
T ss_pred             EEC
Confidence            885

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.97  E-value=8.4e-30  Score=218.26  Aligned_cols=140  Identities=29%  Similarity=0.378  Sum_probs=121.9

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-------CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEE
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-------AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLT   73 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-------~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~   73 (169)
                      ++||||++|||||||||+|.+||||||+++.+.       ++++||||++.+++++++++++|    ++.++|||+++++
T Consensus       188 ~iqtda~i~~GnSGGpl~n~~G~vIGI~~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g----~~~r~~lGv~~~~  263 (351)
T TIGR02038       188 FIQTDAAINAGNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDG----RVIRGYIGVSGED  263 (351)
T ss_pred             EEEECCccCCCCCcceEECCCCeEEEEEeeeecccCCCCccceEEEecHHHHHHHHHHHhhcC----cccceEeeeEEEE
Confidence            589999999999999999999999999997652       57999999999999999999999    8899999999999


Q ss_pred             CCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh--hhhcCCCCeeEE
Q psy18070         74 LNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV--VWSINHPSITCH  151 (169)
Q Consensus        74 l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~  151 (169)
                      +++..++.++++      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++.  +...+....+.+
T Consensus       264 ~~~~~~~~lgl~------~~~Gv~V~~V~~~spA~------~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l  331 (351)
T TIGR02038       264 INSVVAQGLGLP------DLRGIVITGVDPNGPAA------RAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMV  331 (351)
T ss_pred             CCHHHHHhcCCC------ccccceEeecCCCChHH------HCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEE
Confidence            999999998884      23799999999999999      9999999999999988887765543  333344556788


Q ss_pred             EEEEe
Q psy18070        152 ILLRL  156 (169)
Q Consensus       152 ~i~r~  156 (169)
                      .++|+
T Consensus       332 ~v~R~  336 (351)
T TIGR02038       332 TVLRQ  336 (351)
T ss_pred             EEEEC
Confidence            88885

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=99.97  E-value=1.2e-29  Score=217.49  Aligned_cols=140  Identities=27%  Similarity=0.352  Sum_probs=120.2

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--------CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEE
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--------AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITML   72 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--------~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~   72 (169)
                      +|||||++|||||||||+|.+||||||+++.+.        ++++||||++.+++++++|+++|    ++.++|||+.++
T Consensus       188 ~iqtda~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G----~~~~~~lGi~~~  263 (353)
T PRK10898        188 FLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDG----RVIRGYIGIGGR  263 (353)
T ss_pred             eEEeccccCCCCCcceEECCCCeEEEEEEEEecccCCCCcccceEEEEchHHHHHHHHHHhhcC----cccccccceEEE
Confidence            589999999999999999999999999998753        47899999999999999999999    889999999999


Q ss_pred             ECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhh--hhhhcCCCCeeE
Q psy18070         73 TLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKL--VVWSINHPSITC  150 (169)
Q Consensus        73 ~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~--~~~~~~~~~~~~  150 (169)
                      ++++...+.++++      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++  .+........+.
T Consensus       264 ~~~~~~~~~~~~~------~~~Gv~V~~V~~~spA~------~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~  331 (353)
T PRK10898        264 EIAPLHAQGGGID------QLQGIVVNEVSPDGPAA------KAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIP  331 (353)
T ss_pred             ECCHHHHHhcCCC------CCCeEEEEEECCCChHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEE
Confidence            9998877776653      23799999999999999      999999999999999988765443  333334455668


Q ss_pred             EEEEEe
Q psy18070        151 HILLRL  156 (169)
Q Consensus       151 ~~i~r~  156 (169)
                      +.++|.
T Consensus       332 l~v~R~  337 (353)
T PRK10898        332 VVVMRD  337 (353)
T ss_pred             EEEEEC
Confidence            888885

>PRK10942 serine endoprotease; Provisional

Probab=99.96  E-value=1.9e-29  Score=223.45  Aligned_cols=140  Identities=31%  Similarity=0.361  Sum_probs=122.6

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      ||||||++|||||||||+|.+||||||+++..+     .+++||||++.+++++++|++++    .+.++|+|+.+++++
T Consensus       223 ~iqtda~i~~GnSGGpL~n~~GeviGI~t~~~~~~g~~~g~gfaIP~~~~~~v~~~l~~~g----~v~rg~lGv~~~~l~  298 (473)
T PRK10942        223 FIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYG----QVKRGELGIMGTELN  298 (473)
T ss_pred             eEEeccccCCCCCcCccCCCCCeEEEEEEEEEcCCCCcccEEEEEEHHHHHHHHHHHHhcc----ccccceeeeEeeecC
Confidence            589999999999999999999999999998764     46999999999999999999999    899999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh--hhhcCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV--VWSINHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i  153 (169)
                      +++++.++++.      ..|++|.+|.++|||+      ++||++||+|+++++.++.+..++.  +........+.+.+
T Consensus       299 ~~~a~~~~l~~------~~GvlV~~V~~~SpA~------~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v  366 (473)
T PRK10942        299 SELAKAMKVDA------QRGAFVSQVLPNSSAA------KAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGL  366 (473)
T ss_pred             HHHHHhcCCCC------CCceEEEEECCCChHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence            99999998852      3799999999999999      9999999999999888877765544  33334455668888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|+
T Consensus       367 ~R~  369 (473)
T PRK10942        367 LRD  369 (473)
T ss_pred             EEC
Confidence            774

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.96  E-value=8.3e-29  Score=216.60  Aligned_cols=140  Identities=30%  Similarity=0.418  Sum_probs=123.1

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      ++||||++|||||||||+|.+||||||+++..+     .+++||||++.+++++++|++++    .+.++|||+++++++
T Consensus       169 ~i~tda~i~~GnSGGpl~n~~G~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g----~~~~~~lGi~~~~~~  244 (428)
T TIGR02037       169 FIQTDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGG----KVQRGWLGVTIQEVT  244 (428)
T ss_pred             eEEECCCCCCCCCCCceECCCCeEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHhcC----cCcCCcCceEeecCC
Confidence            589999999999999999999999999998764     57899999999999999999999    889999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh--hhhcCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV--VWSINHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i  153 (169)
                      +++++.++++      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++.  +........+.+.+
T Consensus       245 ~~~~~~lgl~------~~~Gv~V~~V~~~spA~------~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v  312 (428)
T TIGR02037       245 SDLAKSLGLE------KQRGALVAQVLPGSPAE------KAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGI  312 (428)
T ss_pred             HHHHHHcCCC------CCCceEEEEccCCCChH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999984      23799999999999999      9999999999999998887665544  33334455678888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|+
T Consensus       313 ~R~  315 (428)
T TIGR02037       313 LRK  315 (428)
T ss_pred             EEC
Confidence            885

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2e-23  Score=177.92  Aligned_cols=138  Identities=32%  Similarity=0.421  Sum_probs=119.8

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      +|||||++||||||||++|.+|++|||+++...     ++++||||++.++.++.++...|    ++.++|+|+.+.+++
T Consensus       184 ~IqtdAain~gnsGgpl~n~~g~~iGint~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G----~v~~~~lgv~~~~~~  259 (347)
T COG0265         184 FIQTDAAINPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDELISKG----KVVRGYLGVIGEPLT  259 (347)
T ss_pred             hhhcccccCCCCCCCceEcCCCcEEEEEEEEecCCCCcceeEEEecHHHHHHHHHHHHHcC----CccccccceEEEEcc
Confidence            589999999999999999999999999999986     24899999999999999999988    899999999999998


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--cCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--INHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i  153 (169)
                      +...  +++      ....|++|.+|.++|||+      ++|+++||+|++.++..+.+..++....  ......+.+.+
T Consensus       260 ~~~~--~g~------~~~~G~~V~~v~~~spa~------~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~  325 (347)
T COG0265         260 ADIA--LGL------PVAAGAVVLGVLPGSPAA------KAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKL  325 (347)
T ss_pred             cccc--cCC------CCCCceEEEecCCCChHH------HcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEE
Confidence            8776  554      244799999999999999      9999999999999888887776666443  33344668888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|.
T Consensus       326 ~r~  328 (347)
T COG0265         326 LRG  328 (347)
T ss_pred             EEC
Confidence            886

>KOG1320|consensus

Probab=99.66  E-value=2.8e-16  Score=138.30  Aligned_cols=150  Identities=29%  Similarity=0.338  Sum_probs=113.1

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCC-----ccceeecceecEE
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDI-----DRTITHKKYIGIT   70 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~-----~~~~~~~~~lGi~   70 (169)
                      ++|||+++|+||||||++|.+|++||+++++..     .+++|++|.+.+..++.+..+..+     -.....+.|+|+.
T Consensus       294 ~~qtd~ai~~~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~p~~~~~g~~  373 (473)
T KOG1320|consen  294 INQTDAAINPGNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLVPVHQYIGLP  373 (473)
T ss_pred             ecccchhhhcccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcccccccCCce
Confidence            579999999999999999999999999999986     789999999999999988743321     1112235688888


Q ss_pred             EEECCHHHHHHhhcccCCCC-CCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--cCCCC
Q psy18070         71 MLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--INHPS  147 (169)
Q Consensus        71 ~~~l~~~~~~~~~~~~~~~~-~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--~~~~~  147 (169)
                      +-.++..+..+.--..+.+| ...+||+|++|.+++++.      ..++++||+|+++|++++.+..++.-..  ....+
T Consensus       374 s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~------~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~  447 (473)
T KOG1320|consen  374 SYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSING------GYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTED  447 (473)
T ss_pred             eEEEecceEEeecCCCccccccceeEEEEEEeccCCCcc------cccccCCCEEEEECCEEeechHHHHHHHHhcCcCc
Confidence            77776555544444444444 333699999999999999      9999999999999999888886666432  22233


Q ss_pred             eeEEEEEEe
Q psy18070        148 ITCHILLRL  156 (169)
Q Consensus       148 ~~~~~i~r~  156 (169)
                      .+....+|.
T Consensus       448 ~v~vl~~~~  456 (473)
T KOG1320|consen  448 KVAVLDRRS  456 (473)
T ss_pred             eEEEEEecC
Confidence            445555554

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.21  E-value=1.2e-10  Score=80.07  Aligned_cols=80  Identities=28%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--  142 (169)
                      +|+|+.+++++++.+..+.+      ....|++|.+|.++|||+      ++||++||+|+++++.++.+..++....  
T Consensus         1 ~~~G~~~~~~~~~~~~~~~~------~~~~g~~V~~v~~~s~a~------~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~   68 (90)
T cd00987           1 PWLGVTVQDLTPDLAEELGL------KDTKGVLVASVDPGSPAA------KAGLKPGDVILAVNGKPVKSVADLRRALAE   68 (90)
T ss_pred             CccceEEeECCHHHHHHcCC------CCCCEEEEEEECCCCHHH------HcCCCcCCEEEEECCEECCCHHHHHHHHHh
Confidence            58999999999887776554      234699999999999999      9999999999999999887654444332  


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      ......+.+.+.|+
T Consensus        69 ~~~~~~i~l~v~r~   82 (90)
T cd00987          69 LKPGDKVTLTVLRG   82 (90)
T ss_pred             cCCCCEEEEEEEEC
Confidence            22245667777774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.20  E-value=7e-11  Score=80.91  Aligned_cols=76  Identities=24%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--h
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--S  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~  142 (169)
                      ||||+++...++                ..|++|.+|.++|||+      ++||++||+|+++++.++.+..++...  .
T Consensus         1 ~~lGv~~~~~~~----------------~~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~l~~   58 (82)
T PF13180_consen    1 GGLGVTVQNLSD----------------TGGVVVVSVIPGSPAA------KAGLQPGDIILAINGKPVNSSEDLVNILSK   58 (82)
T ss_dssp             -E-SEEEEECSC----------------SSSEEEEEESTTSHHH------HTTS-TTEEEEEETTEESSSHHHHHHHHHC
T ss_pred             CEECeEEEEccC----------------CCeEEEEEeCCCCcHH------HCCCCCCcEEEEECCEEcCCHHHHHHHHHh
Confidence            689999998753                2699999999999999      999999999999999988776665533  3


Q ss_pred             cCCCCeeEEEEEEeeEEeec
Q psy18070        143 INHPSITCHILLRLYLLVCS  162 (169)
Q Consensus       143 ~~~~~~~~~~i~r~~~~v~~  162 (169)
                      ......+.+.++|+--..+.
T Consensus        59 ~~~g~~v~l~v~R~g~~~~~   78 (82)
T PF13180_consen   59 GKPGDTVTLTVLRDGEELTV   78 (82)
T ss_dssp             SSTTSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEEEECCEEEEE
Confidence            45566779999996554443

...

>KOG1421|consensus

Probab=99.14  E-value=4.7e-10  Score=102.03  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=113.1

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECCHHHH
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLI   79 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~~~~~   79 (169)
                      ++|.-+....|.||.|++|.+|..|..+..+.. ++.+|++|++.+.+.+..+++..    ...|+.|-+++.+-.-+..
T Consensus       206 y~QaasstsggssgspVv~i~gyAVAl~agg~~ssas~ffLpLdrV~RaL~clq~n~----PItRGtLqvefl~k~~de~  281 (955)
T KOG1421|consen  206 YIQAASSTSGGSSGSPVVDIPGYAVALNAGGSISSASDFFLPLDRVVRALRCLQNNT----PITRGTLQVEFLHKLFDEC  281 (955)
T ss_pred             eeeehhcCCCCCCCCceecccceEEeeecCCcccccccceeeccchhhhhhhhhcCC----CcccceEEEEEehhhhHHH
Confidence            579999999999999999999999999887764 56899999999999999999888    7888999999887777777


Q ss_pred             HHhhcccC-------CCCCCCCcEE-EEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC--CCCee
Q psy18070         80 EQLRRDRH-------IPYDLTHGVL-IWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN--HPSIT  149 (169)
Q Consensus        80 ~~~~~~~~-------~~~~~~~Gv~-V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~--~~~~~  149 (169)
                      +++|++..       .+|.. .|++ |..|.++|||+      +. |++||+++++|.- ..+++..+....+  -+..+
T Consensus       282 rrlGL~sE~eqv~r~k~P~~-tgmLvV~~vL~~gpa~------k~-Le~GDillavN~t-~l~df~~l~~iLDegvgk~l  352 (955)
T KOG1421|consen  282 RRLGLSSEWEQVVRTKFPER-TGMLVVETVLPEGPAE------KK-LEPGDILLAVNST-CLNDFEALEQILDEGVGKNL  352 (955)
T ss_pred             HhcCCcHHHHHHHHhcCccc-ceeEEEEEeccCCchh------hc-cCCCcEEEEEcce-ehHHHHHHHHHHhhccCceE
Confidence            78877543       44543 4655 68899999999      66 9999999998843 3344333332222  34566


Q ss_pred             EEEEEEe
Q psy18070        150 CHILLRL  156 (169)
Q Consensus       150 ~~~i~r~  156 (169)
                      .+.++|.
T Consensus       353 ~LtI~Rg  359 (955)
T KOG1421|consen  353 ELTIQRG  359 (955)
T ss_pred             EEEEEeC
Confidence            9999995

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.88  E-value=1.3e-08  Score=68.69  Aligned_cols=67  Identities=15%  Similarity=-0.002  Sum_probs=50.1

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN  144 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~  144 (169)
                      +|+|+.+.+-                  ..|++|.+|.++|||+      ++||++||+|+++++.++.+ ....+....
T Consensus         1 ~~~G~~~~~~------------------~~~~~V~~V~~~s~a~------~aGl~~GD~I~~Ing~~v~~-~~~~l~~~~   55 (80)
T cd00990           1 PYLGLTLDKE------------------EGLGKVTFVRDDSPAD------KAGLVAGDELVAVNGWRVDA-LQDRLKEYQ   55 (80)
T ss_pred             CcccEEEEcc------------------CCcEEEEEECCCChHH------HhCCCCCCEEEEECCEEhHH-HHHHHHhcC
Confidence            5788888641                  2589999999999999      99999999999999998776 222333333


Q ss_pred             CCCeeEEEEEEe
Q psy18070        145 HPSITCHILLRL  156 (169)
Q Consensus       145 ~~~~~~~~i~r~  156 (169)
                      ....+.+.+.|.
T Consensus        56 ~~~~v~l~v~r~   67 (80)
T cd00990          56 AGDPVELTVFRD   67 (80)
T ss_pred             CCCEEEEEEEEC
Confidence            344567777764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.76  E-value=3.4e-08  Score=86.72  Aligned_cols=83  Identities=22%  Similarity=0.295  Sum_probs=66.7

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--  141 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--  141 (169)
                      ..|+|+++.+++++.+++++++     ....|++|.+|.++|||+      ++||++||+|+++++.++.+..++...  
T Consensus       337 ~~~lGi~~~~l~~~~~~~~~l~-----~~~~Gv~V~~V~~~SpA~------~aGL~~GDvI~~Ing~~V~s~~d~~~~l~  405 (428)
T TIGR02037       337 NPFLGLTVANLSPEIRKELRLK-----GDVKGVVVTKVVSGSPAA------RAGLQPGDVILSVNQQPVSSVAELRKVLD  405 (428)
T ss_pred             ccccceEEecCCHHHHHHcCCC-----cCcCceEEEEeCCCCHHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            4689999999999999988774     334799999999999999      999999999999998887766554433  


Q ss_pred             hcCCCCeeEEEEEEee
Q psy18070        142 SINHPSITCHILLRLY  157 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~~  157 (169)
                      ..+....+.+.++|+-
T Consensus       406 ~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       406 RAKKGGRVALLILRGG  421 (428)
T ss_pred             hcCCCCEEEEEEEECC
Confidence            2234566788888864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.64  E-value=2.2e-07  Score=63.19  Aligned_cols=61  Identities=16%  Similarity=0.021  Sum_probs=46.4

Q ss_pred             CCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC--CCCeeEEEEEEeeE
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN--HPSITCHILLRLYL  158 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~r~~~  158 (169)
                      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++......  ....+.+.+.|+-.
T Consensus         8 ~~~Gv~V~~V~~~spa~------~aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991           8 AVAGVVIVGVIVGSPAE------NAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             cCCcEEEEEECCCChHH------hcCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence            34799999999999999      999999999999998887765444433222  24456788887543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.61  E-value=2.6e-07  Score=76.62  Aligned_cols=92  Identities=11%  Similarity=0.016  Sum_probs=72.9

Q ss_pred             hhHHHHHHhhhhcCCccceeecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCc
Q psy18070         43 DYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTS  122 (169)
Q Consensus        43 ~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GD  122 (169)
                      ..++++++++++.+    ..-+.|+|+.....+               ....|+.|..+.++|||+      ++|||+||
T Consensus       159 ~~~~~v~~~l~~~g----~~~~~~lgi~p~~~~---------------g~~~G~~v~~v~~~s~a~------~aGLr~GD  213 (259)
T TIGR01713       159 VVSRRIIEELTKDP----QKMFDYIRLSPVMKN---------------DKLEGYRLNPGKDPSLFY------KSGLQDGD  213 (259)
T ss_pred             hhHHHHHHHHHHCH----HhhhheEeEEEEEeC---------------CceeEEEEEecCCCCHHH------HcCCCCCC
Confidence            46788999999988    888999999986543               112699999999999999      99999999


Q ss_pred             EEEecCceeecchhhhh--hhhcCCCCeeEEEEEEeeEE
Q psy18070        123 SRLLGECLAQYTTSKLV--VWSINHPSITCHILLRLYLL  159 (169)
Q Consensus       123 vI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~r~~~~  159 (169)
                      +|+++|+.++.+..+..  +........+.+.+.|+--.
T Consensus       214 vIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       214 IAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             EEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            99999999887765544  33334445778999986543

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG1320|consensus

Probab=98.60  E-value=5.2e-08  Score=86.38  Aligned_cols=116  Identities=18%  Similarity=0.180  Sum_probs=92.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec--cCCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEEC-CHH
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV--TAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTL-NEK   77 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~--~~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l-~~~   77 (169)
                      .+|+||+++|||||+|.+.-.++++|+++.++  .+++++.+|.-...++.......++   ....++++...+.+ +.+
T Consensus       200 ~vqi~aa~~~~~s~ep~i~g~d~~~gvA~l~ik~~~~i~~~i~~~~~~~~~~G~~~~a~---~~~f~~~nt~t~g~vs~~  276 (473)
T KOG1320|consen  200 RVQIDAAIGPGNSGEPVIVGVDKVAGVAFLKIKTPENILYVIPLGVSSHFRTGVEVSAI---GNGFGLLNTLTQGMVSGQ  276 (473)
T ss_pred             eEEEEEeecCCccCCCeEEccccccceEEEEEecCCcccceeecceeeeecccceeecc---ccCceeeeeeeecccccc
Confidence            38999999999999999988899999999998  4578999999999998887766653   34556666666555 466


Q ss_pred             HHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceee
Q psy18070         78 LIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQ  132 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~  132 (169)
                      .++.+.+.     .. .|+.+.++.+-+.|.      .. ++.||+|+..+++.+
T Consensus       277 ~R~~~~lg-----~~-~g~~i~~~~qtd~ai------~~-~nsg~~ll~~DG~~I  318 (473)
T KOG1320|consen  277 LRKSFKLG-----LE-TGVLISKINQTDAAI------NP-GNSGGPLLNLDGEVI  318 (473)
T ss_pred             cccccccC-----cc-cceeeeeecccchhh------hc-ccCCCcEEEecCcEe
Confidence            66666553     33 789999999999888      55 999999999766655

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.54  E-value=4e-07  Score=59.67  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~  135 (169)
                      .|++|.+|.++|||+      ++||++||+|+++++.++.+.
T Consensus        13 ~~~~V~~v~~~s~a~------~~gl~~GD~I~~Ing~~v~~~   48 (70)
T cd00136          13 GGVVVLSVEPGSPAE------RAGLQAGDVILAVNGTDVKNL   48 (70)
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCEEEEECCEECCCC
Confidence            489999999999999      999999999999998887665

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.48  E-value=9.2e-07  Score=59.46  Aligned_cols=71  Identities=20%  Similarity=0.098  Sum_probs=50.0

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWS  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~  142 (169)
                      ..+|+.+.....               ...|++|..|.++|||+      ++||++||+|+++++....+.  .+.....
T Consensus        12 ~~~G~~~~~~~~---------------~~~~~~i~~v~~~s~a~------~~gl~~GD~I~~In~~~v~~~~~~~~~~~~   70 (85)
T smart00228       12 GGLGFSLVGGKD---------------EGGGVVVSSVVPGSPAA------KAGLKVGDVILEVNGTSVEGLTHLEAVDLL   70 (85)
T ss_pred             CcccEEEECCCC---------------CCCCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            678888875321               11599999999999999      999999999999998877643  3333332


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      ......+.+.+.|.
T Consensus        71 ~~~~~~~~l~i~r~   84 (85)
T smart00228       71 KKAGGKVTLTVLRG   84 (85)
T ss_pred             HhCCCeEEEEEEeC
Confidence            33334556666663

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.45  E-value=1.1e-06  Score=59.16  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY  133 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~  133 (169)
                      ...+|+++......               ..|++|.+|.++|||+      ++||++||+|+++++....
T Consensus        11 ~~~~G~~~~~~~~~---------------~~~~~V~~v~~~s~a~------~~gl~~GD~I~~ing~~i~   59 (82)
T cd00992          11 GGGLGFSLRGGKDS---------------GGGIFVSRVEPGGPAE------RGGLRVGDRILEVNGVSVE   59 (82)
T ss_pred             CCCcCEEEeCcccC---------------CCCeEEEEECCCChHH------hCCCCCCCEEEEECCEEcC
Confidence            45689988764321               2699999999999999      9999999999999998877

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.43  E-value=1.5e-06  Score=59.03  Aligned_cols=57  Identities=23%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcC-CCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSIN-HPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~-~~~~~~~~i~r~  156 (169)
                      .+++|..|.++|||+      ++||++||+|+++++.+..+.  .+....... ....+.+.+.|.
T Consensus        13 ~~~~V~~v~~~s~a~------~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          13 GGLVITSVLPGSPAA------KAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CeEEEEEecCCCCHH------HcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            689999999999999      999999999999999887764  444333222 344567777775

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.43  E-value=1.5e-06  Score=58.23  Aligned_cols=57  Identities=21%  Similarity=0.027  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      ..++|.+|.++|||+      ++||++||+|+++++.+..+..+........ ...+.+.+.|.
T Consensus        12 ~~~~V~~v~~~s~a~------~~gl~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r~   69 (79)
T cd00989          12 IEPVIGEVVPGSPAA------KAGLKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVERN   69 (79)
T ss_pred             cCcEEEeECCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEEC
Confidence            358999999999999      9999999999999999877654443332222 34557777764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.36  E-value=2.8e-06  Score=57.39  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--cCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--INHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      . ||++||+|+++++.++.+..++....  ......+.+.+.|.
T Consensus         8 ~Gv~V~~V~~~s~A~------~-gL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~   65 (79)
T cd00986           8 HGVYVTSVVEGMPAA------G-KLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKRE   65 (79)
T ss_pred             cCEEEEEECCCCchh------h-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            699999999999999      6 79999999999998877654443222  23344567888774

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.35  E-value=1.5e-06  Score=58.92  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVV  140 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~  140 (169)
                      ....+|+++.......              ..|++|.+|.++|||+      ++||++||.|+++|+..+.+.  .+...
T Consensus         8 ~~~~lG~~l~~~~~~~--------------~~~~~V~~v~~~~~a~------~~gl~~GD~Il~INg~~v~~~~~~~~~~   67 (81)
T PF00595_consen    8 GNGPLGFTLRGGSDND--------------EKGVFVSSVVPGSPAE------RAGLKVGDRILEINGQSVRGMSHDEVVQ   67 (81)
T ss_dssp             TTSBSSEEEEEESTSS--------------SEEEEEEEECTTSHHH------HHTSSTTEEEEEETTEESTTSBHHHHHH
T ss_pred             CCCCcCEEEEecCCCC--------------cCCEEEEEEeCCChHH------hcccchhhhhheeCCEeCCCCCHHHHHH
Confidence            4567999998653210              2599999999999999      999999999999998887654  33333


Q ss_pred             hhcCCCCeeEEEE
Q psy18070        141 WSINHPSITCHIL  153 (169)
Q Consensus       141 ~~~~~~~~~~~~i  153 (169)
                      .....+..+.+.+
T Consensus        68 ~l~~~~~~v~L~V   80 (81)
T PF00595_consen   68 LLKSASNPVTLTV   80 (81)
T ss_dssp             HHHHSTSEEEEEE
T ss_pred             HHHCCCCcEEEEE
Confidence            3333444555544

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10942 serine endoprotease; Provisional

Probab=98.25  E-value=3.8e-06  Score=75.10  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=47.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+..++.....+.+..+.+.+.|.
T Consensus       408 ~gvvV~~V~~~S~A~------~aGL~~GDvIv~VNg~~V~s~~dl~~~l~~~~~~v~l~V~R~  464 (473)
T PRK10942        408 KGVVVDNVKPGTPAA------QIGLKKGDVIIGANQQPVKNIAELRKILDSKPSVLALNIQRG  464 (473)
T ss_pred             CCeEEEEeCCCChHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            589999999999999      999999999999999988887666544444456678888885

>PRK10139 serine endoprotease; Provisional

Probab=97.96  E-value=1.9e-05  Score=70.34  Aligned_cols=57  Identities=19%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+..++.....+++..+.+.++|+
T Consensus       390 ~Gv~V~~V~~~spA~------~aGL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~v~l~v~R~  446 (455)
T PRK10139        390 KGIKIDEVVKGSPAA------QAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRG  446 (455)
T ss_pred             CceEEEEeCCCChHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            599999999999999      999999999999998888776555544333445667888885

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.90  E-value=5.8e-05  Score=64.35  Aligned_cols=57  Identities=21%  Similarity=0.130  Sum_probs=41.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhh-cCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWS-INHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~-~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++||++||+|+++++.++.+-  .+..... ......+.+.+.|.
T Consensus        62 ~~~~V~~V~~~spA~------~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  121 (334)
T TIGR00225        62 GEIVIVSPFEGSPAE------KAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRA  121 (334)
T ss_pred             CEEEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence            589999999999999      999999999999999887652  2222121 12344557777774

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR00054 RIP metalloprotease RseP

Probab=97.80  E-value=5e-05  Score=66.90  Aligned_cols=57  Identities=18%  Similarity=-0.057  Sum_probs=44.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC-CCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN-HPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+-.+....... ....+.+.+.|+
T Consensus       203 ~g~vV~~V~~~SpA~------~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R~  260 (420)
T TIGR00054       203 IEPVLSDVTPNSPAE------KAGLKEGDYIQSINGEKLRSWTDFVSAVKENPGKSMDIKVERN  260 (420)
T ss_pred             cCcEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCceEEEEEEC
Confidence            489999999999999      999999999999998887765554433322 333457777775

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR00054 RIP metalloprotease RseP

Probab=97.79  E-value=3.6e-05  Score=67.81  Aligned_cols=57  Identities=19%  Similarity=0.013  Sum_probs=46.2

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r  155 (169)
                      ..|++|.+|.++|||+      +|||++||+|+++|+.++.+..++........+...+.+.|
T Consensus       127 ~~g~~V~~V~~~SpA~------~AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r  183 (420)
T TIGR00054       127 EVGPVIELLDKNSIAL------EAGIEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILA  183 (420)
T ss_pred             CCCceeeccCCCCHHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEE
Confidence            3699999999999999      99999999999999888887766665544444566677766

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.69  E-value=2.9e-05  Score=68.90  Aligned_cols=55  Identities=15%  Similarity=-0.019  Sum_probs=42.7

Q ss_pred             EEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEEEEe
Q psy18070         96 VLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHILLRL  156 (169)
Q Consensus        96 v~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~r~  156 (169)
                      .+|.+|.++|||+      +||||+||+|+++|+.++.+-.++...  .......+.+++.|.
T Consensus       128 ~lV~~V~~~SpA~------kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~  184 (449)
T PRK10779        128 PVVGEIAPNSIAA------QAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPF  184 (449)
T ss_pred             ccccccCCCCHHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeC
Confidence            4789999999999      999999999999888887776555433  333334568888875

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.67  E-value=0.0001  Score=65.36  Aligned_cols=57  Identities=16%  Similarity=0.002  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc-CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++||++||+|+++|+.++.+-.+...... .....+.+.+.|+
T Consensus       221 ~~~vV~~V~~~SpA~------~AGL~~GDvIl~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R~  278 (449)
T PRK10779        221 IEPVLAEVQPNSAAS------KAGLQAGDRIVKVDGQPLTQWQTFVTLVRDNPGKPLALEIERQ  278 (449)
T ss_pred             cCcEEEeeCCCCHHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEEC
Confidence            368999999999999      99999999999999888766544433222 2334567777774

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.64  E-value=0.00013  Score=63.70  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT  134 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~  134 (169)
                      .|++|..|.++|||+      ++||++||+|+++++.++.+
T Consensus       102 ~g~~V~~V~~~SPA~------~aGl~~GD~Iv~InG~~v~~  136 (389)
T PLN00049        102 AGLVVVAPAPGGPAA------RAGIRPGDVILAIDGTSTEG  136 (389)
T ss_pred             CcEEEEEeCCCChHH------HcCCCCCCEEEEECCEECCC
Confidence            489999999999999      99999999999999988764

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.00044  Score=60.83  Aligned_cols=57  Identities=26%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh-hhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-KLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~-~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .++.|.++.+++||+      ++||++||+|+++++.++.... +.++..+  +....+.+.+.|.
T Consensus       112 ~~~~V~s~~~~~PA~------kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         112 GGVKVVSPIDGSPAA------KAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCcEEEecCCCChHH------HcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            589999999999999      9999999999999988776663 3333333  3344668888884

>PF12812 PDZ_1: PDZ-like domain

Probab=97.46  E-value=0.00052  Score=46.98  Aligned_cols=64  Identities=14%  Similarity=-0.000  Sum_probs=52.2

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW  141 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~  141 (169)
                      -.|+|..+++|+-+.++++++.        -|+++.....++++.      ..|+.+|-+|+++|+.++.+-.++...
T Consensus         8 v~~~Ga~f~~Ls~q~aR~~~~~--------~~gv~v~~~~g~~~~------~~~i~~g~iI~~Vn~kpt~~Ld~f~~v   71 (78)
T PF12812_consen    8 VEVCGAVFHDLSYQQARQYGIP--------VGGVYVAVSGGSLAF------AGGISKGFIITSVNGKPTPDLDDFIKV   71 (78)
T ss_pred             EEEcCeecccCCHHHHHHhCCC--------CCEEEEEecCCChhh------hCCCCCCeEEEeECCcCCcCHHHHHHH
Confidence            3679999999999999999875        456666778899998      666999999999998887776655543

>KOG3553|consensus

Probab=97.46  E-value=9.9e-05  Score=52.98  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCcee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLA  131 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~  131 (169)
                      .|++|++|.+||||+      .||||.+|-|+.+|+-.
T Consensus        59 ~GiYvT~V~eGsPA~------~AGLrihDKIlQvNG~D   90 (124)
T KOG3553|consen   59 KGIYVTRVSEGSPAE------IAGLRIHDKILQVNGWD   90 (124)
T ss_pred             ccEEEEEeccCChhh------hhcceecceEEEecCce
Confidence            699999999999999      99999999999988764

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.18  E-value=0.0007  Score=60.90  Aligned_cols=54  Identities=20%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             ecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCce
Q psy18070         67 IGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECL  130 (169)
Q Consensus        67 lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v  130 (169)
                      .|+++.++.++ .-.+|++-.   +...+.+|+.|.++|||+      +|||.+||.|++++++
T Consensus       439 ~gL~~~~~~~~-~~~LGl~v~---~~~g~~~i~~V~~~gPA~------~AGl~~Gd~ivai~G~  492 (558)
T COG3975         439 FGLTFTPKPRE-AYYLGLKVK---SEGGHEKITFVFPGGPAY------KAGLSPGDKIVAINGI  492 (558)
T ss_pred             cceEEEecCCC-CcccceEec---ccCCeeEEEecCCCChhH------hccCCCccEEEEEcCc
Confidence            56666555443 223333211   333678999999999999      9999999999999998

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.17  E-value=0.00057  Score=51.68  Aligned_cols=73  Identities=19%  Similarity=0.099  Sum_probs=44.5

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCC-CcEEEecCceeecchhhhh-hhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP-TSSRLLGECLAQYTTSKLV-VWS  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~-GDvI~~~~~v~~~~~~~~~-~~~  142 (169)
                      +.||++++--..+-            ..+.+.-|.+|.|+|||+      +|||+| .|-|+..+.....+..++. ...
T Consensus        26 g~LG~sv~~~~~~~------------~~~~~~~Vl~V~p~SPA~------~AGL~p~~DyIig~~~~~l~~~~~l~~~v~   87 (138)
T PF04495_consen   26 GLLGISVRFESFEG------------AEEEGWHVLRVAPNSPAA------KAGLEPFFDYIIGIDGGLLDDEDDLFELVE   87 (138)
T ss_dssp             SSS-EEEEEEE-TT------------GCCCEEEEEEE-TTSHHH------HTT--TTTEEEEEETTCE--STCHHHHHHH
T ss_pred             CCCcEEEEEecccc------------cccceEEEeEecCCCHHH------HCCccccccEEEEccceecCCHHHHHHHHH
Confidence            67999987543210            223689999999999999      999999 6999996654433333333 223


Q ss_pred             cCCCCeeEEEEEE
Q psy18070        143 INHPSITCHILLR  155 (169)
Q Consensus       143 ~~~~~~~~~~i~r  155 (169)
                      ......+.+.+++
T Consensus        88 ~~~~~~l~L~Vyn  100 (138)
T PF04495_consen   88 ANENKPLQLYVYN  100 (138)
T ss_dssp             HTTTS-EEEEEEE
T ss_pred             HcCCCcEEEEEEE
Confidence            4455667787776

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.10  E-value=0.0023  Score=56.30  Aligned_cols=58  Identities=21%  Similarity=0.064  Sum_probs=42.3

Q ss_pred             CCcEEEEEE--------ccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC-CCCeeEEEEEEe
Q psy18070         93 THGVLIWRV--------MYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN-HPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V--------~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~r~  156 (169)
                      +.||+|...        ..+|||+      ++|||+||+|+++|+.++.+..++...... ....+.+.+.|.
T Consensus       104 t~GVlVvg~~~v~~~~g~~~SPAa------~AGLq~GDiIvsING~~V~s~~DL~~iL~~~~g~~V~LtV~R~  170 (402)
T TIGR02860       104 TKGVLVVGFSDIETEKGKIHSPGE------EAGIQIGDRILKINGEKIKNMDDLANLINKAGGEKLTLTIERG  170 (402)
T ss_pred             cCEEEEEEEEcccccCCCCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence            379999665        2369999      999999999999998887776555433222 245567777775

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.06  E-value=0.0017  Score=60.42  Aligned_cols=29  Identities=10%  Similarity=0.000  Sum_probs=26.9

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecC
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGE  128 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~  128 (169)
                      .+++|.+|.|||||+      ++ ||++||+|++++
T Consensus       255 ~~~~V~~vipGsPA~------ka~gLk~GD~IlaVn  284 (667)
T PRK11186        255 DYTVINSLVAGGPAA------KSKKLSVGDKIVGVG  284 (667)
T ss_pred             CeEEEEEccCCChHH------HhCCCCCCCEEEEEC
Confidence            468999999999999      98 999999999976

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.99  E-value=0.00091  Score=59.21  Aligned_cols=50  Identities=18%  Similarity=0.056  Sum_probs=37.1

Q ss_pred             EEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEE
Q psy18070         97 LIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILL  154 (169)
Q Consensus        97 ~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~  154 (169)
                      +|.+|.|+|||+      ++||++||.|+++|+.++.+-.+.......  ..+.+.+.
T Consensus         1 ~I~~V~pgSpAe------~AGLe~GD~IlsING~~V~Dw~D~~~~l~~--e~l~L~V~   50 (433)
T TIGR03279         1 LISAVLPGSIAE------ELGFEPGDALVSINGVAPRDLIDYQFLCAD--EELELEVL   50 (433)
T ss_pred             CcCCcCCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHhcC--CcEEEEEE
Confidence            367899999999      999999999999999988775554433322  33455554

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.70  E-value=0.0027  Score=59.43  Aligned_cols=50  Identities=26%  Similarity=0.401  Sum_probs=35.8

Q ss_pred             eeccccCCCCccceEEcCCccEEEEEeeecc----------CCe--EEEEehhhHHHHHHhh
Q psy18070          3 LTGIMVKFGNSGGPLVNLDGEVIGINSMKVT----------AGI--SFAIPIDYAIEFLTNY   52 (169)
Q Consensus         3 q~da~in~GnSGGplvn~~G~vvGi~~~~~~----------~~~--~faiP~~~i~~~l~~l   52 (169)
                      -++.-|..||||+|++|.+||+||+++-..-          ...  +..|=+..+..+++.+
T Consensus       625 lstnDitGGNSGSPvlN~~GeLVGl~FDgn~Esl~~D~~fdp~~~R~I~VDiRyvL~~ldkv  686 (698)
T PF10459_consen  625 LSTNDITGGNSGSPVLNAKGELVGLAFDGNWESLSGDIAFDPELNRTIHVDIRYVLWALDKV  686 (698)
T ss_pred             EeccCcCCCCCCCccCCCCceEEEEeecCchhhcccccccccccceeEEEEHHHHHHHHHHH
Confidence            3567788999999999999999999997652          122  3444445555665554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.

>KOG3129|consensus

Probab=96.62  E-value=0.0045  Score=49.89  Aligned_cols=61  Identities=20%  Similarity=0.009  Sum_probs=43.0

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhh----hhcCCCCeeEEEEEEeeEEee
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVV----WSINHPSITCHILLRLYLLVC  161 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~----~~~~~~~~~~~~i~r~~~~v~  161 (169)
                      =++|.+|.|+|||+      +|||+.||-|++...+...+-..+..    ........+.+++.|.--.|+
T Consensus       140 Fa~V~sV~~~SPA~------~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~  204 (231)
T KOG3129|consen  140 FAVVDSVVPGSPAD------EAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVV  204 (231)
T ss_pred             eEEEeecCCCChhh------hhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEE
Confidence            36899999999999      99999999999966665555443221    122345566888888644443

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.13  E-value=0.044  Score=38.34  Aligned_cols=57  Identities=14%  Similarity=0.004  Sum_probs=36.4

Q ss_pred             CcEEEEEEccC--------CcccccccccccCC--CCCcEEEecCceeecchhhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYN--------SPAYFIKFRTSAGI--KPTSSRLLGECLAQYTTSKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~--------spA~~~~~~~~aGL--~~GDvI~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .+..|.++.++        ||-.      +.|+  ++||+|+++|+.++..+.....+...+ ...+.+++.+.
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~------~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~~   79 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLA------QPGVDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTVNRK   79 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGG------GGS----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-S
T ss_pred             CEEEEEEEeCCCCCCccccCCcc------CCCCCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEEecC
Confidence            67889999776        5555      5554  599999999999999886666555554 44667777653

>KOG3532|consensus

Probab=96.05  E-value=0.017  Score=53.73  Aligned_cols=59  Identities=15%  Similarity=0.024  Sum_probs=46.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      .-|-|..|.+++||.      ++-+++|||+++++++++.+..+.......-.+.+.....|...
T Consensus       398 ~~v~v~tv~~ns~a~------k~~~~~gdvlvai~~~pi~s~~q~~~~~~s~~~~~~~l~~~~~~  456 (1051)
T KOG3532|consen  398 RAVKVCTVEDNSLAD------KAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLD  456 (1051)
T ss_pred             eEEEEEEecCCChhh------HhcCCCcceEEEecCccchhHHHHHHHHHhcccceEEEEeeccc
Confidence            457799999999999      99999999999999999998888776655556665444444433

>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.01  E-value=0.0075  Score=45.34  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             eccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          4 TGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         4 ~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      .|.-+.+|.||.|++|.+|++||+-....
T Consensus        90 ~~~d~~~GsSGSpi~n~~g~ivGlYg~g~  118 (132)
T PF00949_consen   90 IDLDFPKGSSGSPIFNQNGEIVGLYGNGV  118 (132)
T ss_dssp             E---S-TTGTT-EEEETTSCEEEEEEEEE
T ss_pred             eecccCCCCCCCceEcCCCcEEEEEccce
Confidence            34558999999999999999999976554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies serine peptidases belong to MEROPS peptidase family S7 (flavivirin family, clan PA(S)). The protein fold of the peptidase domain for members of this family resembles that of chymotrypsin, the type example for clan PA. Flaviviruses produce a polyprotein from the ssRNA genome. The N terminus of the NS3 protein (approx. 180 aa) is required for the processing of the polyprotein. NS3 also has conserved homology with NTP-binding proteins and DEAD family of RNA helicase [, , ].; GO: 0003723 RNA binding, 0003724 RNA helicase activity, 0005524 ATP binding; PDB: 2IJO_B 3E90_D 2GGV_B 2FP7_B 2WV9_A 3U1I_B 3U1J_B 2WZQ_A 2WHX_A 3L6P_A ....

>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.41  E-value=0.022  Score=43.05  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeeccCCeEEEEe
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIP   41 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP   41 (169)
                      ..-+||.||-|++|-.|+||||+-...++|--.++.
T Consensus       101 g~g~~GDSGRpi~DNsGrVVaIVLGG~neG~RTaLS  136 (158)
T PF00944_consen  101 GVGKPGDSGRPIFDNSGRVVAIVLGGANEGRRTALS  136 (158)
T ss_dssp             TS-STTSTTEEEESTTSBEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCCCCCCccCcCCCCEEEEEecCCCCCCceEEE
Confidence            345899999999999999999998887766555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....

>KOG1421|consensus

Probab=95.18  E-value=0.27  Score=46.16  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=73.2

Q ss_pred             CCCCccceEEcCCccEEEEEeeecc---CC----eEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECCHHHHHH
Q psy18070          9 KFGNSGGPLVNLDGEVIGINSMKVT---AG----ISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQ   81 (169)
Q Consensus         9 n~GnSGGplvn~~G~vvGi~~~~~~---~~----~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~~~~~~~   81 (169)
                      ..++| |-+.|-+|+|+++=-.-..   ++    +-|-+.+..+..+++.|+.++    ......+|+.+..++-..++.
T Consensus       677 T~c~s-g~ltdddg~vvalwl~~~ge~~~~kd~~y~~gl~~~~~l~vl~rlk~g~----~~rp~i~~vef~~i~laqar~  751 (955)
T KOG1421|consen  677 TSCLS-GRLTDDDGEVVALWLSVVGEDVGGKDYTYKYGLSMSYILPVLERLKLGP----SARPTIAGVEFSHITLAQART  751 (955)
T ss_pred             ccccc-eEEECCCCeEEEEEeeeeccccCCceeEEEeccchHHHHHHHHHHhcCC----CCCceeeccceeeEEeehhhc
Confidence            34455 4899999999995332222   22    346667778999999999887    444555677776666555555


Q ss_pred             hhcccC------CCCCCC-CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh
Q psy18070         82 LRRDRH------IPYDLT-HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK  137 (169)
Q Consensus        82 ~~~~~~------~~~~~~-~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~  137 (169)
                      +|++..      -..... +=.+|+.|.+.-+..         |..||||+++|+.-+..-.+
T Consensus       752 lglp~e~imk~e~es~~~~ql~~ishv~~~~~ki---------l~~gdiilsvngk~itr~~d  805 (955)
T KOG1421|consen  752 LGLPSEFIMKSEEESTIPRQLYVISHVRPLLHKI---------LGVGDIILSVNGKMITRLSD  805 (955)
T ss_pred             cCCCHHHHhhhhhcCCCcceEEEEEeeccCcccc---------cccccEEEEecCeEEeeehh
Confidence            554311      000111 235678898766544         99999999988776554433

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.86  E-value=0.034  Score=46.51  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=25.4

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEE
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAI   40 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~fai   40 (169)
                      .+||+||.|++..+|.+|||.+.+...|.++.-
T Consensus       205 T~~GDSGSPVVt~dg~liGVHTGSn~~G~g~vT  237 (297)
T PF05579_consen  205 TGPGDSGSPVVTEDGDLIGVHTGSNKRGSGAVT  237 (297)
T ss_dssp             S-GGCTT-EEEETTC-EEEEEEEEETTTEEEEE
T ss_pred             cCCCCCCCccCcCCCCEEEEEecCCCcCceEEE
Confidence            479999999999999999999988776666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A.

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=94.84  E-value=0.052  Score=45.57  Aligned_cols=60  Identities=10%  Similarity=0.063  Sum_probs=41.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhh--hhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKL--VVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~--~~~~~~~~~~~~~~i~r~  156 (169)
                      .|+.=-.|.|+.+++   .-.++|||+|||++++|++...+..+.  +...+.....+.+++.|.
T Consensus       204 ~Gl~GYrl~Pgkd~~---lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRd  265 (276)
T PRK09681        204 EGIVGYAVKPGADRS---LFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRK  265 (276)
T ss_pred             CCceEEEECCCCcHH---HHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEEC
Confidence            462224567775543   123799999999999999987766543  344566777889999995

>KOG3571|consensus

Probab=94.36  E-value=0.12  Score=46.79  Aligned_cols=59  Identities=10%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             CCCcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch-----hhhhhhhcCCCCeeEEEEEEe
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT-----SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ...|++|.++.+++.-+      .- -|.+||.|+.+|.+...+-     .+.+.....+++.+.+++-+-
T Consensus       275 gDggIYVgsImkgGAVA------~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  275 GDGGIYVGSIMKGGAVA------LDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             CCCceEEeeeccCceee------ccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeec
Confidence            34799999999999777      44 4999999999887754332     233333456777777776553

>KOG3580|consensus

Probab=93.77  E-value=0.082  Score=48.87  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~  135 (169)
                      -|+.|..|..+|||+      +-||+.||-|+.+|.+...+-
T Consensus       429 VGIFVaGvqegspA~------~eGlqEGDQIL~VN~vdF~nl  464 (1027)
T KOG3580|consen  429 VGIFVAGVQEGSPAE------QEGLQEGDQILKVNTVDFRNL  464 (1027)
T ss_pred             eeEEEeecccCCchh------hccccccceeEEeccccchhh
Confidence            599999999999999      999999999999988875554

>KOG2921|consensus

Probab=93.03  E-value=0.099  Score=45.99  Aligned_cols=41  Identities=17%  Similarity=0.084  Sum_probs=34.0

Q ss_pred             CCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK  137 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~  137 (169)
                      ...||.|++|...||+.    +.+ ||.+||+|++.++.++.+..+
T Consensus       218 ~g~gV~Vtev~~~Spl~----gpr-GL~vgdvitsldgcpV~~v~d  258 (484)
T KOG2921|consen  218 HGEGVTVTEVPSVSPLF----GPR-GLSVGDVITSLDGCPVHKVSD  258 (484)
T ss_pred             cCceEEEEeccccCCCc----Ccc-cCCccceEEecCCcccCCHHH
Confidence            34699999999999998    334 999999999988887777644

>KOG3605|consensus

Probab=92.29  E-value=0.26  Score=45.84  Aligned_cols=82  Identities=13%  Similarity=0.091  Sum_probs=59.0

Q ss_pred             EEEehhhHHHHHHhhhhcCCccceeec----ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccc
Q psy18070         38 FAIPIDYAIEFLTNYKRKDIDRTITHK----KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR  113 (169)
Q Consensus        38 faiP~~~i~~~l~~l~~~g~~~~~~~~----~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~  113 (169)
                      --+|.+..+.+++.++++-    .++.    .--=.++.-.-|+++.+||.      ....||+++=. .|+-|+     
T Consensus       707 VGLPLstcQs~Ik~~KnQT----~VkltiV~cpPV~~V~I~RPd~kyQLGF------SVQNGiICSLl-RGGIAE-----  770 (829)
T KOG3605|consen  707 VGLPLSTCQSIIKGLKNQT----AVKLNIVSCPPVTTVLIRRPDLRYQLGF------SVQNGIICSLL-RGGIAE-----  770 (829)
T ss_pred             ccccHHHHHHHHhcccccc----eEEEEEecCCCceEEEeecccchhhccc------eeeCcEeehhh-cccchh-----
Confidence            3478888999998888775    3222    11112233334778888887      45589988755 589999     


Q ss_pred             cccCCCCCcEEEecCceeecchh
Q psy18070        114 TSAGIKPTSSRLLGECLAQYTTS  136 (169)
Q Consensus       114 ~~aGL~~GDvI~~~~~v~~~~~~  136 (169)
                       |.|+|.|-.|+++|+..+..+-
T Consensus       771 -RGGVRVGHRIIEINgQSVVA~p  792 (829)
T KOG3605|consen  771 -RGGVRVGHRIIEINGQSVVATP  792 (829)
T ss_pred             -ccCceeeeeEEEECCceEEecc
Confidence             9999999999999988877663

>KOG3550|consensus

Probab=92.02  E-value=0.31  Score=37.70  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=32.0

Q ss_pred             CcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~~~  135 (169)
                      +-++|+.+.||+-|+      + .||+.||-++++|++.+...
T Consensus       115 spiyisriipggvad------rhgglkrgdqllsvngvsvege  151 (207)
T KOG3550|consen  115 SPIYISRIIPGGVAD------RHGGLKRGDQLLSVNGVSVEGE  151 (207)
T ss_pred             CceEEEeecCCcccc------ccCcccccceeEeecceeecch
Confidence            579999999999999      6 58999999999999887655

>KOG3580|consensus

Probab=91.70  E-value=0.37  Score=44.73  Aligned_cols=64  Identities=11%  Similarity=0.081  Sum_probs=42.8

Q ss_pred             CCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh-hhhhhcCCCCeeEEEEEEeeEEee
Q psy18070         91 DLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK-LVVWSINHPSITCHILLRLYLLVC  161 (169)
Q Consensus        91 ~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~-~~~~~~~~~~~~~~~i~r~~~~v~  161 (169)
                      +..+-++|++|.||+||+       .-||.||-|+.+|++...+... +++...++.+...-+..++-..|+
T Consensus        37 ~getSiViSDVlpGGPAe-------G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprkvq  101 (1027)
T KOG3580|consen   37 NGETSIVISDVLPGGPAE-------GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRKVQ  101 (1027)
T ss_pred             CCceeEEEeeccCCCCcc-------cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccceee
Confidence            445679999999999999       4599999999999997666533 233344444444333333333333

>KOG3209|consensus

Probab=91.56  E-value=0.23  Score=46.74  Aligned_cols=51  Identities=18%  Similarity=0.081  Sum_probs=36.8

Q ss_pred             EEEEccCCcccccccccccC-CCCCcEEEecCceeecchhhhh--hhhcCCCCeeEEEEE
Q psy18070         98 IWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSKLV--VWSINHPSITCHILL  154 (169)
Q Consensus        98 V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~  154 (169)
                      |-+|.+||||+      +.| |+.||.|+++|+..+.+-....  .+..+..-.+.++|.
T Consensus       782 iGrIieGSPAd------RCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIi  835 (984)
T KOG3209|consen  782 IGRIIEGSPAD------RCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTII  835 (984)
T ss_pred             ccccccCChhH------hhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEc
Confidence            77889999999      876 9999999999998887764433  233333444455553

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=90.88  E-value=0.24  Score=41.07  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=28.5

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ++-|+-+-||+||.|+++.+.+|+|+......
T Consensus       194 l~y~~dT~pG~SGSpv~~~~~~vigv~~~g~~  225 (251)
T COG3591         194 LFYDADTLPGSSGSPVLISKDEVIGVHYNGPG  225 (251)
T ss_pred             EEEEecccCCCCCCceEecCceEEEEEecCCC
Confidence            67788999999999999999999999887654

>KOG3542|consensus

Probab=90.61  E-value=0.2  Score=47.04  Aligned_cols=57  Identities=14%  Similarity=0.031  Sum_probs=39.1

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhcCCCCeeEEEEEE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~~~~~~~~~~i~r  155 (169)
                      ..|++|.+|.|+|-|+      +.||+.||-|+++|+....+- +..+........-..+++.-
T Consensus       561 GfgifV~~V~pgskAa------~~GlKRgDqilEVNgQnfenis~~KA~eiLrnnthLtltvKt  618 (1283)
T KOG3542|consen  561 GFGIFVAEVFPGSKAA------REGLKRGDQILEVNGQNFENISAKKAEEILRNNTHLTLTVKT  618 (1283)
T ss_pred             cceeEEeeecCCchHH------HhhhhhhhhhhhccccchhhhhHHHHHHHhcCCceEEEEEec
Confidence            3589999999999999      999999999999887654433 22233333333333444433

>KOG3834|consensus

Probab=90.15  E-value=0.39  Score=42.61  Aligned_cols=63  Identities=16%  Similarity=0.059  Sum_probs=47.3

Q ss_pred             EEEEEEccCCcccccccccccCCC-CCcEEEec-CceeecchhhhhhhhcCCCCeeEEEEEEeeEEeeccc
Q psy18070         96 VLIWRVMYNSPAYFIKFRTSAGIK-PTSSRLLG-ECLAQYTTSKLVVWSINHPSITCHILLRLYLLVCSEL  164 (169)
Q Consensus        96 v~V~~V~~~spA~~~~~~~~aGL~-~GDvI~~~-~~v~~~~~~~~~~~~~~~~~~~~~~i~r~~~~v~~~~  164 (169)
                      .-|-+|.++|||+      .|||+ -+|-|+.+ +.+-..++..+.+...+....+++.+|.-+.-.|.++
T Consensus       111 wHvl~V~p~SPaa------lAgl~~~~DYivG~~~~~~~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReV  175 (462)
T KOG3834|consen  111 WHVLSVEPNSPAA------LAGLRPYTDYIVGIWDAVMHEEEDLFTLIESHEGKPLKLYVYNHDTDSCREV  175 (462)
T ss_pred             eeeeecCCCCHHH------hcccccccceEecchhhhccchHHHHHHHHhccCCCcceeEeecCCCccceE
Confidence            4467889999999      99999 68999987 6665555555555666677788888888777666554

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=89.83  E-value=0.95  Score=38.87  Aligned_cols=55  Identities=16%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~r  155 (169)
                      .||++..|..+|||.       .-|+.||-|+++++.+..+..++.-.  +.+....+.+...|
T Consensus       130 ~gvyv~~v~~~~~~~-------gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r  186 (342)
T COG3480         130 AGVYVLSVIDNSPFK-------GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYER  186 (342)
T ss_pred             eeEEEEEccCCcchh-------ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEe
Confidence            699999999999998       45999999999988887777666633  33334455666665

>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.47  E-value=0.49  Score=35.81  Aligned_cols=32  Identities=34%  Similarity=0.596  Sum_probs=22.3

Q ss_pred             CCCCccceEEcCCccEEEEEeeecc-CCeEEEE
Q psy18070          9 KFGNSGGPLVNLDGEVIGINSMKVT-AGISFAI   40 (169)
Q Consensus         9 n~GnSGGplvn~~G~vvGi~~~~~~-~~~~fai   40 (169)
                      -.|.||||++-.+|.+|||-.+... .+..-+|
T Consensus       106 lkGSSGgPiLC~~GH~vG~f~aa~~trgvak~i  138 (148)
T PF02907_consen  106 LKGSSGGPILCPSGHAVGMFRAAVCTRGVAKAI  138 (148)
T ss_dssp             HTT-TT-EEEETTSEEEEEEEEEEEETTEEEEE
T ss_pred             EecCCCCcccCCCCCEEEEEEEEEEcCCceeeE
Confidence            3699999999999999999876653 3444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies the Hepatitis C virus NS3 protein as a serine protease which belongs to MEROPS peptidase family S29 (hepacivirin family, clan PA(S)), which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. The NS2 proteinase (IPR002518 from INTERPRO), a zinc-dependent enzyme, performs a single proteolytic cut to release the N terminus of NS3. The action of NS3 proteinase (NS3P), which resides in the N-terminal one-third of the NS3 protein, then yields all remaining non-structural proteins. The C-terminal two-thirds of the NS3 protein contain a helicase. The functional relationship between the proteinase and helicase domains is unknown. NS3 has a structural zinc-binding site and requires cofactor NS4. It has been suggested that the NS3 serine protease of hepatitus C is involved in cell transformation and that the ability to transform requires an active enzyme [].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0019087 transformation of host cell by virus; PDB: 2QV1_B 3LOX_C 2OBQ_C 2OC1_C 2OC0_A 3LON_A 3KNX_A 2O8M_A 2OBO_A 2OC8_A ....

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.13  E-value=0.95  Score=33.76  Aligned_cols=35  Identities=29%  Similarity=0.304  Sum_probs=25.2

Q ss_pred             eccccCCCCccceEEcCCccEEEEEeeeccCCeEEE
Q psy18070          4 TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFA   39 (169)
Q Consensus         4 ~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~fa   39 (169)
                      ...+..||.-||+|+ .+--|+||.+++...-.+|+
T Consensus        83 g~Gp~~PGdCGg~L~-C~HGViGi~Tagg~g~VaF~  117 (127)
T PF00947_consen   83 GEGPAEPGDCGGILR-CKHGVIGIVTAGGEGHVAFA  117 (127)
T ss_dssp             EE-SSSTT-TCSEEE-ETTCEEEEEEEEETTEEEEE
T ss_pred             ecccCCCCCCCceeE-eCCCeEEEEEeCCCceEEEE
Confidence            345789999999999 55569999999875434443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>KOG3209|consensus

Probab=84.78  E-value=2.1  Score=40.62  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=44.9

Q ss_pred             CCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhcCCCCeeEEEEEEe
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      +.-+++|.+..+++||.      +.| ++.||-|+++|+...... -..++..++..+...++++|+
T Consensus       921 ynM~LfVLRlAeDGPA~------rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~  981 (984)
T KOG3209|consen  921 YNMDLFVLRLAEDGPAI------RDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRR  981 (984)
T ss_pred             cccceEEEEeccCCCcc------ccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEecc
Confidence            34579999999999999      876 999999999988765554 334556677777666666664

>KOG0606|consensus

Probab=83.37  E-value=0.95  Score=44.56  Aligned_cols=34  Identities=18%  Similarity=0.025  Sum_probs=28.9

Q ss_pred             EEEEEEccCCcccccccccccCCCCCcEEEecCceeecch
Q psy18070         96 VLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        96 v~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~  135 (169)
                      -.|+.|.++|||.      .+|+++||.|+.+++..+...
T Consensus       660 h~v~sv~egsPA~------~agls~~DlIthvnge~v~gl  693 (1205)
T KOG0606|consen  660 HSVGSVEEGSPAF------EAGLSAGDLITHVNGEPVHGL  693 (1205)
T ss_pred             eeeeeecCCCCcc------ccCCCccceeEeccCcccchh
Confidence            5789999999999      899999999999886554443

>KOG3651|consensus

Probab=81.01  E-value=2.1  Score=36.76  Aligned_cols=42  Identities=19%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchhhhhhh
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSKLVVW  141 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~~~~~  141 (169)
                      .=++|..|-.++||+      +-| ++.||-|+++|++.+...-+..+.
T Consensus        30 PClYiVQvFD~tPAa------~dG~i~~GDEi~avNg~svKGktKveVA   72 (429)
T KOG3651|consen   30 PCLYIVQVFDKTPAA------KDGRIRCGDEIVAVNGISVKGKTKVEVA   72 (429)
T ss_pred             CeEEEEEeccCCchh------ccCccccCCeeEEecceeecCccHHHHH
Confidence            468999999999999      765 999999999999988776555544

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=80.77  E-value=2.2  Score=35.35  Aligned_cols=56  Identities=11%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh--hhhhhcCCCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK--LVVWSINHPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~--~~~~~~~~~~~~~~~i~r~  156 (169)
                      |-.+.=..++|.-+      ..|||+||+-+++|+....+..+  .++..+......++++.|+
T Consensus       208 Gyr~~pgkd~slF~------~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~  265 (275)
T COG3031         208 GYRFEPGKDGSLFY------KSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRR  265 (275)
T ss_pred             EEEecCCCCcchhh------hhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEec
Confidence            33344444555555      89999999999988876555433  3344556667778888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
1lcy_A	325	Crystal Structure Of The Mitochondrial Serine Prote		2e-25
3nzi_A	334	Substrate Induced Remodeling Of The Active Site Reg		1e-22
3num_A	332	Substrate Induced Remodeling Of The Active Site Reg		3e-22
3nwu_A	227	Substrate Induced Remodeling Of The Active Site Reg		8e-14
3tjn_A	228	Htra1 Catalytic Domain, Apo Form Length = 228		1e-13
3tjo_A	231	Htra1 Catalytic Domain, Mutationally Inactivated Le		2e-13
2zle_A	448	Cryo-Em Structure Of Degp12OMP Length = 448		9e-07
3pv4_A	354	Structure Of Legionella Fallonii Degq (Delta-Pdz2 V		9e-07
3mh5_A	456	Htra Proteases Are Activated By A Conserved Mechani		9e-07
3cs0_A	448	Crystal Structure Of Degp24 Length = 448		9e-07
3pv2_A	451	Structure Of Legionella Fallonii Degq (Wt) Length =		1e-06
3pv5_A	451	Structure Of Legionella Fallonii Degq (N189gP190G V		1e-06
3otp_A	459	Crystal Structure Of The Degp Dodecamer With A Mode		2e-06
3mh4_A	456	Htra Proteases Are Activated By A Conserved Mechani		2e-06
1ky9_A	448	Crystal Structure Of Degp (Htra) Length = 448		2e-06
3mh7_A	456	Htra Proteases Are Activated By A Conserved Mechani		2e-06
4a8d_A	448	Degp Dodecamer With Bound Omp Length = 448		2e-06
3pv3_A	451	Structure Of Legionella Fallonii Degq (S193a Varian		2e-06
1l1j_A	239	Crystal Structure Of The Protease Domain Of An Atp-		5e-05
2pzd_A	113	Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND		8e-05
4fln_A	539	Crystal Structure Of Plant Protease Deg2 Length = 5		2e-04

>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease Htra2 Length = 325

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 11/133 (8%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTI-- 61
           T   + FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D   EFL   ++K+    I  
Sbjct: 164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISG 223
Query: 62  THKKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           + ++YIG+ MLTL+  ++ +L+ R+   P D+ HGVLI +V+  SPA+       AG++P
Sbjct: 224 SQRRYIGVMMLTLSPSILAELQLREPSFP-DVQHGVLIHKVILGSPAH------RAGLRP 276
Query: 121 TSSRL-LGECLAQ 132
               L +GE + Q
Sbjct: 277 GDVILAIGEQMVQ 289

>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 334

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDIDRTIT 62
           T  ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT ++ R+   + IT
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 63  HKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
            KKYIGI M++L     ++L +DRH  + D+  G  I  V+ ++PA
Sbjct: 223 KKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 267

>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 332

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKDIDRTIT 62
           T  ++ +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT ++ R+   + IT
Sbjct: 163 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 63  HKKYIGITMLTLNEKLIEQLRRDRHIPY-DLTHGVLIWRVMYNSPA 107
            KKYIGI M++L     ++L +DRH  + D+  G  I  V+ ++PA
Sbjct: 223 KKKYIGIRMMSLTSSKAKEL-KDRHRDFPDVISGAYIIEVIPDTPA 267

>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 227

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
           T  ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 209

>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form Length = 228

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
           T  ++ +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT
Sbjct: 180 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226

>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 50
           T  ++ +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT
Sbjct: 180 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226

>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP Length = 448

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
                +  +GI    LN +L + ++       D   G  + +V+ NS A     +     
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
           TS   KP SS
Sbjct: 311 TSLNGKPISS 320

>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant) Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVN  GE+IGIN+  ++      GI FAIPI+           KD+ 
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59  RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
           + I      H+  +GI +    + L  +L +    P D   G L+ +V  NSPA      
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
             AG+K       G+ + Q   +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314

>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
                +  +GI    LN +L + ++       D   G  + +V+ NS A     +     
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
           TS   KP SS
Sbjct: 311 TSLNGKPISS 320

>pdb|3CS0|A Chain A, Crystal Structure Of Degp24 Length = 448

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
                +  +GI    LN +L +  +       D   G  + +V+ NS A           
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
                     F   R   G  P  S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337

>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt) Length = 451

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVN  GE+IGIN+  ++      GI FAIPI+           KD+ 
Sbjct: 196 TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59  RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
           + I      H+  +GI +    + L  +L +    P D   G L+ +V  NSPA      
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
             AG+K       G+ + Q   +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314

>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT) Length = 451

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GNSGG LVN  GE+IGIN+  ++      GI FAIPI+           KD+ 
Sbjct: 196 TDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59  RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
           + I      H+  +GI +    + L  +L +    P D   G L+ +V  NSPA      
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
             AG+K       G+ + Q   +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314

>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model Substrate Length = 459

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
                +  +GI    LN +L + ++       D   G  + +V+ NS A     +     
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
           TS   KP SS
Sbjct: 311 TSLNGKPISS 320

>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
                +  +GI    LN +L + ++       D   G  + +V+ NS A     +     
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
           TS   KP SS
Sbjct: 311 TSLNGKPISS 320

>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra) Length = 448

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
                +  +GI    LN +L +  +       D   G  + +V+ NS A           
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
                     F   R   G  P  S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337

>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNX----VKNLTSQXVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAY---------- 108
                +  +GI    LN +L +  +       D   G  + +V+ NS A           
Sbjct: 257 YGQVKRGELGIXGTELNSELAKAXK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 109 ----------FIKFRTSAGIKPTSSRL 125
                     F   R   G  P  S+L
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKL 337

>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp Length = 448

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +     + N   + ++
Sbjct: 201 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSN----MVKNLTSQMVE 256
Query: 59  RTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR----- 113
                +  +GI    LN +L + ++       D   G  + +V+ NS A     +     
Sbjct: 257 YGQVKRGELGIMGTELNSELAKAMK------VDAQRGAFVSQVLPNSSAAKAGIKAGDVI 310
Query: 114 TSAGIKPTSS 123
           TS   KP SS
Sbjct: 311 TSLNGKPISS 320

>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant) Length = 451

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 36/145 (24%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDID 58
           T   +  GN+GG LVN  GE+IGIN+  ++      GI FAIPI+           KD+ 
Sbjct: 196 TDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV---------KDVA 246
Query: 59  RTI-----THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFR 113
           + I      H+  +GI +    + L  +L +    P D   G L+ +V  NSPA      
Sbjct: 247 QQIIKFGSIHRGLMGIFV----QHLTPELAQAMGYPEDF-QGALVSQVNPNSPAEL---- 297
Query: 114 TSAGIKPTSSRLLGECLAQYTTSKL 138
             AG+K       G+ + Q   +K+
Sbjct: 298 --AGLK------AGDIITQINDTKI 314

>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFLTNYKRKDIDR 59
           T   +  GNSGGPL+N+ GEVIGIN+  V       + FAIPI+   +FL        D 
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL--------DT 225
Query: 60  TITHKK----YIGI 69
            +T KK    Y+G+
Sbjct: 226 ILTQKKVEKAYLGV 239

>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A PHAGE-Derived Ligand (Wtmfwv) Length = 113

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Query: 64  KKYIGITMLTLNEKLIEQLR-RDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTS 122
           ++YIG+ MLTL+  ++ +L+ R+   P D+ HGVLI +V+  SPA+       AG++P  
Sbjct: 5   RRYIGVMMLTLSPSILAELQLREPSFP-DVQHGVLIHKVILGSPAH------RAGLRPGD 57
Query: 123 SRL-LGECLAQ 132
             L +GE + Q
Sbjct: 58  VILAIGEQMVQ 68

>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2 Length = 539

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 11  GNSGGPLVNLDGEVIGIN----SMKVTAGISFAIPIDYAIEFLTNYKRKDIDRTITHKKY 66
           GNSGGP  N  GE IG+       + T  I + IP      FLT+Y+R        + KY
Sbjct: 198 GNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYER--------NGKY 249
Query: 67  IGITMLTLNEKLIEQ--LRRDRHIPYDLTHGVLIWRVMYNSPA 107
            G   L +  + +E   LR    +P +   GVL+ RV   S A
Sbjct: 250 TGYPCLGVLLQKLENPALRECLKVPTN--EGVLVRRVEPTSDA 290

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	1e-39
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	1e-38
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	5e-21
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	3e-20
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	2e-19
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	3e-19
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	4e-19
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	6e-19
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	7e-19
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	1e-18
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	1e-14
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	2e-14
2w5e_A	163	Putative serine protease; coiled coil, transmembra	1e-13
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	4e-13
3k6y_A	237	Serine protease, possible membrane-associated seri	5e-13
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	2e-12
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	3e-12
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	1e-11
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	3e-11
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	3e-11
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	3e-11
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	1e-09
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	2e-09
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	1e-06
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	8e-06
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	1e-05
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	6e-04

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score =  135 bits (342), Expect = 1e-39
 Identities = 54/113 (47%), Positives = 75/113 (66%), Gaps = 8/113 (7%)

Query: 10  FGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKR--KDIDRTITHKKYI 67
           FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D   EFL   ++       + + ++YI
Sbjct: 170 FGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYI 229

Query: 68  GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           G+ MLTL+  ++ +L+       D+ HGVLI +V+  SPA+       AG++P
Sbjct: 230 GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRP 276

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score =  133 bits (336), Expect = 1e-38
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 19/145 (13%)

Query: 10  FGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKD-IDRTITHKKYIG 68
           +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT    +    + IT KKYIG
Sbjct: 169 YGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIG 228

Query: 69  ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP-------- 120
           I M++L     ++L+       D+  G  I  V+ ++PA       + G+K         
Sbjct: 229 IRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAE------AGGLKENDVIISIN 282

Query: 121 ----TSSRLLGECLAQYTTSKLVVW 141
                S+  + + + + +T  +VV 
Sbjct: 283 GQSVVSANDVSDVIKRESTLNMVVR 307

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Length = 231

 Score = 85.1 bits (211), Expect = 5e-21
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK 55
           GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D   +FLT    +
Sbjct: 187 GNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDR 231

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 34/127 (26%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSGGPL++  G +IGIN+   +     +G+ F+IP+D             +D+ +   K
Sbjct: 178 GNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTV--------GGIVDQLVRFGK 229

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPT 121
                +GI      ++ +EQL            GVL+     + PA        AG++ T
Sbjct: 230 VTRPILGIKFAP--DQSVEQLGVS---------GVLVLDAPPSGPA------GKAGLQST 272

Query: 122 SSRLLGE 128
                G 
Sbjct: 273 KRDGYGR 279

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 82.2 bits (204), Expect = 2e-19
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 11  GNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKDIDRTIT 62
           GNSGG LVN  GE++GIN++        +   GI FAIP   A         K +D+ I 
Sbjct: 163 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLA--------TKIMDKLIR 214

Query: 63  HKK----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGI 118
             +    YIGI    +     +    D+        G+++  V  + PA       +AGI
Sbjct: 215 DGRVIRGYIGIGGREIAPLHAQGGGIDQ------LQGIVVNEVSPDGPA------ANAGI 262

Query: 119 KP 120
           + 
Sbjct: 263 QV 264

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 29/119 (24%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GN+GG LVNL+GE+IGIN+  +       GI FAIP +          +    + + + +
Sbjct: 208 GNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV--------KNLTSQMVEYGQ 259

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
                +GI    LN +L + ++ D         G  + +V+ NS A        AGIK 
Sbjct: 260 VKRGELGIMGTELNSELAKAMKVDA------QRGAFVSQVLPNSSA------AKAGIKA 306

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 28/119 (23%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSGG LVN  GE+IGIN+  ++      GI FAIPI+          +    + I    
Sbjct: 203 GNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMV--------KDVAQQIIKFGS 254

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
                +GI +  L  +L + +            G L+ +V  NSPA        AG+K 
Sbjct: 255 IHRGLMGIFVQHLTPELAQAMGYPED-----FQGALVSQVNPNSPA------ELAGLKA 302

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 80.8 bits (200), Expect = 6e-19
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 46/126 (36%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFLTNYKRKDID 58
           GNSGG LVN++ +++G+NS   T             G+ FAIP+D A        ++  D
Sbjct: 167 GNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQA--------KRIAD 218

Query: 59  RTITHKK----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRT 114
             I+  K     +G+ +    +                T G  I  V+    A       
Sbjct: 219 ELISTGKASHASLGVQVTNDKD----------------TLGAKIVEVVAGGAA------A 256

Query: 115 SAGIKP 120
           +AG+  
Sbjct: 257 NAGVPK 262

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 81.5 bits (202), Expect = 7e-19
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 29/119 (24%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GN+GG L+NL+GE+IGIN+  +       GI FAIP + A        R    + I   +
Sbjct: 185 GNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA--------RTLAQQLIDFGE 236

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
                +GI    ++  + +    D         G  +  V+  S +        AG+K 
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSGS------AKAGVKA 283

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 29/119 (24%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSGG L+NL+GE+IGIN+  +       GI FAIP + A        R    + I   +
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA--------RTLAQQLIDFGE 236

Query: 66  ----YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
                +GI    ++  + +    D         G  +  V+  S +        AG+K 
Sbjct: 237 IKRGLLGIKGTEMSADIAKAFNLDV------QRGAFVSEVLPGSGS------AKAGVKA 283

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Length = 239

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYA 45
           GNSGGPL+N+ GEVIGIN+  V       + FAIPI+  
Sbjct: 181 GNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTV 219

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Length = 210

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTA----GISFAIPIDYAIEFLTNYKRK 55
           GNSG P++N + EVIG+    +                  +F+  +  +
Sbjct: 156 GNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ 204

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Length = 163

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 11  GNSGGPLVNLDGEVIGINSMK--VTAGISFAIPIDYA 45
           G SG P+ +    V+ ++      T G     P D+ 
Sbjct: 125 GMSGAPVCDKYCRVLAVHQTNTGYTGGAVIIDPTDFH 161

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Length = 245

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYA 45
           GNSGG L+NL+GE+IGIN+  +       GI FAIP + A
Sbjct: 185 GNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Length = 237

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYKR 54
           G+SGGPL++L+G+V+G+        A   F +        L     
Sbjct: 181 GDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGA 226

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Length = 242

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPID 43
           GNSG  + N +GE++GI+S KV+       I++ + I 
Sbjct: 193 GNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIG 230

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 11  GNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYA 45
           GNSGG LVN  GE++GIN++        +   GI FAIP   A
Sbjct: 174 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLA 216

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 62  THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP- 120
             K++IGI M T+   L+++L+       +++ G+ +  V  NSP+         GI+  
Sbjct: 3   HMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQ------RGGIQDG 56

Query: 121 -----------TSSRLLGECLAQYTTSKLVVW 141
                        S  L E +   +   L V 
Sbjct: 57  DIIVKVNGRPLVDSSELQEAVLTESPLLLEVR 88

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 20/90 (22%)

Query: 35  GISFAIPIDYAIEFLTNYKRKDIDRTITHKK----YIGITMLTLNEKLIEQLRRDRHIPY 90
           G+ FAIP + AI          I++   + K     +GI M+ L+      +RR  +IP 
Sbjct: 3   GLGFAIPANDAINI--------IEQLEKNGKVTRPALGIQMVNLSNVSTSDIRR-LNIPS 53

Query: 91  DLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           ++T GV++  V  N PA       +  ++ 
Sbjct: 54  NVTSGVIVRSVQSNMPA-------NGHLEK 76

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 64  KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP 120
           ++YIG+ MLTL+  ++ +L+       D+ HGVLI +V+  SPA+       AG++P
Sbjct: 5   RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRP 55

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Length = 204

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 11  GNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRK 55
           GNSG P++N + E++GI+                       +F+     K
Sbjct: 155 GNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENIDK 204

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Length = 200

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 55
           GNSG P++N   E+IGI                        EF+ N   K
Sbjct: 152 GNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLK-EFIQNNIEK 200

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTA-GISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSG  + NL GE+IGI+S K     +   +  +  I  L +      D      K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLK 239

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDIDR 59
           GNSG P+ N   EVIGI+   V    + A+ I+  +    N+ +++I+ 
Sbjct: 167 GNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVR---NFLKQNIED 212

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A Length = 213

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTAGI-SFAIPIDYAIE 47
           G+SG P++   GE++G+++     G      P      
Sbjct: 125 GDSGSPVITEAGELVGVHTGSNKQGGGIVTRPSGQFCN 162

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 45
           T +  + G+SGGPL +     IG+ S       + G +F  P+  A
Sbjct: 132 TNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAI-EFLTNYKRK 55
           GNSG  +++ + +++G+++   + G I+       A  EF+   K +
Sbjct: 169 GNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.97
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.97
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.97
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.96
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.96
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.96
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.96
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.95
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.94
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.94
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.74
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.7
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.6
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.53
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.51
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.47
3k6y_A	237	Serine protease, possible membrane-associated seri	99.31
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.11
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.01
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.98
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.97
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.95
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	98.95
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.92
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.91
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.87
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.82
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.82
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.81
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.8
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.8
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.78
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.78
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.77
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.76
2ego_A	96	General receptor for phosphoinositides 1- associat	98.76
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.76
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.75
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.75
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.73
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.73
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.73
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.72
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.72
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.72
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.71
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.71
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.7
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.69
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.69
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.69
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.69
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.66
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.66
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.66
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.66
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.66
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.66
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.66
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.66
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.65
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.65
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.65
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.65
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.65
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.64
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.64
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.64
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.64
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.64
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.63
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.63
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.63
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.62
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.62
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.62
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.62
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.61
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.61
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.61
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.61
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.61
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.6
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.6
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.6
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.6
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.6
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.6
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.6
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.6
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.6
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.6
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.59
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.59
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.59
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.58
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.57
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.57
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.56
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.56
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.56
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.56
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.55
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.55
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.55
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.54
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.54
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.53
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.53
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.53
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.53
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.53
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.52
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.52
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.52
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.52
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.51
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.51
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.51
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.51
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.5
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.5
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.5
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.49
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.49
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.49
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.49
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.48
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.48
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.48
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.48
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.47
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.47
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.47
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.46
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.46
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.46
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.84
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.46
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.45
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.45
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.45
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.45
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.44
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.43
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.43
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.42
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.42
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.42
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.42
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.41
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.41
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.4
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.4
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.4
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.38
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.37
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.37
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.36
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.34
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.33
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.33
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.32
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.32
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.32
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.31
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.31
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.31
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.31
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	98.3
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.3
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.3
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.28
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.28
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.28
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.27
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.25
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.25
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.24
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.24
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.24
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.23
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.22
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.22
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.19
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.18
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.16
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.14
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.12
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.07
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	98.04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.04
1hpg_A	187	Glutamic acid specific protease; serine protease,	98.0
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	97.99
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	97.97
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.96
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	97.92
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	97.91
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.9
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	97.9
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	97.89
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.88
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	97.8
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	97.77
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.77
3k50_A	403	Putative S41 protease; structural genomics, joint	97.76
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.75
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	97.68
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	97.65
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	97.61
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.53
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	97.52
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	97.49
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.39
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	97.36
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.26
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	97.24
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.04
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.9
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	95.22
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	94.14
1vcp_A	149	Semliki forest virus capsid protein; virus coat pr	94.09
2fp7_B	172	Serine protease NS3; flavivirus, NS3 protease, NS2	94.07
1svp_A	161	Sindbis virus capsid protein; chymotrypsin-like se	93.94
3e90_B	198	NS3 protease; trypsin-like serine protease, protea	93.92
1ep5_B	157	Capsid protein C, coat protein C; beta barrel, hyd	93.87
2fom_B	185	Polyprotein; flavivirus, NS3 protease, NS2B cofact	93.8
2ggv_B	185	NS3, non-structural protein 3; beta barrel, serine	93.77
3u1j_B	191	Serine protease NS3; serine protease, ER MEM hydro	93.74
4agk_A	158	Capsid protein, coat protein, C; hydrolase, viral	93.69
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	93.55
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	93.41
3lkw_A	236	Fusion protein of nonstructural protein 2B and non	93.26
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	92.63
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	92.62
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	92.59
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	92.48
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	92.34
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	92.3
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	91.99
2aiq_A	231	Protein C activator; snake venom serine proteinase	91.93
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	91.58
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	91.28
1a7s_A	225	Heparin binding protein; serine protease homolog,	91.18
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	91.15
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	91.03
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	90.98
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	90.91
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	90.86
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	90.76
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	90.61
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	90.51
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	90.39
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	90.36
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	90.35
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	90.1
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	89.89
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	89.71
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	89.68
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	89.62
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	89.58
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	89.44
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	89.38
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	89.05
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	88.98
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	88.58
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	88.23
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	87.97
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	87.77
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	87.74
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	87.44
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	86.83
1aut_C	250	Activated protein C; serine proteinase, plasma cal	86.3
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	85.75
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	85.63
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	85.04
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	84.61
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	84.09
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	84.04
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	83.95
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	83.74
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	83.63
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	83.57
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	83.53
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	82.38
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	81.86
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	81.78
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	81.67
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	81.59
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	81.58
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	81.04
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	80.69
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	80.37

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.97  E-value=1.3e-30  Score=232.62  Aligned_cols=139  Identities=26%  Similarity=0.290  Sum_probs=119.3

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHHHhhhhcCCcccee-ecceecEEEEEC-
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNYKRKDIDRTIT-HKKYIGITMLTL-   74 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~g~~~~~~-~~~~lGi~~~~l-   74 (169)
                      +|||||+||||||||||||.+|+||||+++..+    +|+|||||++.+++++++|+++|    ++ .++|||++++++ 
T Consensus       188 ~IQtDAaInpGnSGGPLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G----~~~~r~~LGv~~~~~~  263 (539)
T 4fln_A          188 GIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNG----KYTGYPCLGVLLQKLE  263 (539)
T ss_dssp             EEEESSCCCTTTTTSEEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTT----SCCCCCBCCEEEEECC
T ss_pred             EEEEEeEecCCCccchhccCCCcEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHcC----eEEeeeecceEEEecC
Confidence            489999999999999999999999999998763    68999999999999999999988    55 499999999997 


Q ss_pred             CHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh------------hhhhh
Q psy18070         75 NEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK------------LVVWS  142 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~------------~~~~~  142 (169)
                      ++++++.++++      ...|++|.+|.++|||+      ++ ||+||||+++++..+.+..+            ..+..
T Consensus       264 ~~~~~~~~~l~------~~~Gv~V~~V~~~spA~------~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~  330 (539)
T 4fln_A          264 NPALRECLKVP------TNEGVLVRRVEPTSDAS------KV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ  330 (539)
T ss_dssp             CHHHHHHHTCS------SSBCEEEEEECTTSGGG------GT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred             CHHHHHhcCCC------CcCceeeecccCCChHH------hC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence            88999999985      23799999999999999      76 99999999999888765433            23333


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      ......+.+.++|.
T Consensus       331 ~~~Gd~v~l~v~R~  344 (539)
T 4fln_A          331 KFAGDIAEIGIIRA  344 (539)
T ss_dssp             SCTTCEEEEEEEET
T ss_pred             CCCCCEEEEEEEEC
Confidence            34455679999995

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.97  E-value=1.1e-30  Score=221.66  Aligned_cols=140  Identities=25%  Similarity=0.298  Sum_probs=124.5

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      ++|||+++|||||||||+|.+|+||||+++..+     .+++||||++.+++++++|++++    .+.++|||+++++++
T Consensus       175 ~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g----~v~~~~lGv~~~~~~  250 (345)
T 3stj_A          175 FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG----EIKRGLLGIKGTEMS  250 (345)
T ss_dssp             EEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS----SCCCEECCEEEEECC
T ss_pred             EEEEecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcc----cccccccceeeEeec
Confidence            489999999999999999999999999998864     47999999999999999999999    889999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--cCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--INHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i  153 (169)
                      +++++.++++.      ..|++|.+|.++|||+      +|||++||+|+++|+.++.+..++....  .+....+.+.+
T Consensus       251 ~~~a~~~gl~~------~~G~~V~~V~~~spA~------~aGL~~GDvI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v  318 (345)
T 3stj_A          251 ADIAKAFNLDV------QRGAFVSEVLPGSGSA------KAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL  318 (345)
T ss_dssp             HHHHHHTTCSC------CSSEEEEEECTTSHHH------HHTCCTTCEECEETTEECSCHHHHHHHHHTSCTTCEEEEEE
T ss_pred             HHHHHhcCCCC------CceEEEEEeccCChHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999852      4799999999999999      9999999999999998887766555433  33456779999


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|+
T Consensus       319 ~R~  321 (345)
T 3stj_A          319 LRN  321 (345)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.97  E-value=5.9e-30  Score=224.12  Aligned_cols=141  Identities=28%  Similarity=0.334  Sum_probs=123.9

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      +||||+++|||||||||+|.+|+||||+++..+     .+++||||++.+++++++|++++    ++.++|||+++++++
T Consensus       193 ~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g----~v~r~~lGv~~~~~~  268 (451)
T 3pv2_A          193 FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFG----SIHRGLMGIFVQHLT  268 (451)
T ss_dssp             CEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHS----SCCCCBCCEEEEECC
T ss_pred             EEEEecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHhcC----CcccccccceEEecc
Confidence            689999999999999999999999999998764     57999999999999999999999    899999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i  153 (169)
                      +++++.++++     ....|++|.+|.++|||+      ++||++||+|+++|+.++.+..++...  .......+.+.+
T Consensus       269 ~~~a~~~gl~-----~~~~G~~V~~V~~~spA~------~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V  337 (451)
T 3pv2_A          269 PELAQAMGYP-----EDFQGALVSQVNPNSPAE------LAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV  337 (451)
T ss_dssp             HHHHHHTTSC-----TTCCCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEE
T ss_pred             HHHHHhcCCC-----cCCceEEEEecCCCChHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999985     333799999999999999      999999999999998887766555433  334456778999


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|.
T Consensus       338 ~R~  340 (451)
T 3pv2_A          338 ERD  340 (451)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.96  E-value=3e-29  Score=210.90  Aligned_cols=149  Identities=40%  Similarity=0.545  Sum_probs=120.2

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeeccCCeEEEEehhhHHHHHHhhhhcCC--ccceeecceecEEEEECCHHH
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDI--DRTITHKKYIGITMLTLNEKL   78 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~~~i~~~l~~l~~~g~--~~~~~~~~~lGi~~~~l~~~~   78 (169)
                      +||+|++++||||||||+|.+|+||||+++...++++||||++.++++++++++.+.  +.+.+.++|+|+.+.++++++
T Consensus       161 ~i~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~~g~~~aip~~~i~~~l~~~~~~~~~~g~~~~~r~~lGv~~~~l~~~~  240 (325)
T 1lcy_A          161 YIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSI  240 (325)
T ss_dssp             CEEESSCCSTTTTTSEEEETTSCEEEEEEEEEETTEEEEEEHHHHHHHTCC---------------EECCEEEEECCHHH
T ss_pred             EEEEcCCCCCCCccccEECCCCEEEEEEeEeecCCeeEEEEHHHHHHHHHHhhhcccccccccccccccceEeecCCHHH
Confidence            689999999999999999999999999999888899999999999999999876421  112678899999999999999


Q ss_pred             HHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         79 IEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      +++++++....|+...|++|.+|.++|||+      ++||++||+|+++++.++.+..++..... ....+.+.+.|+
T Consensus       241 ~~~~~l~~~~~~~~~~gv~V~~V~~~spA~------~aGl~~GDvI~~ing~~v~~~~~l~~~l~-~~~~v~l~v~R~  311 (325)
T 1lcy_A          241 LAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRPGDVILAIGEQMVQNAEDVYEAVR-TQSQLAVQIRRG  311 (325)
T ss_dssp             HHHHTTSCTTSCCCSSCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHHHHT-TCSSEEEEEEET
T ss_pred             HHhhCccccccccCCCCeEEEEeCcCChHH------HCCCCCCCEEEEECCEEcCCHHHHHHHHh-CCCeEEEEEEEC
Confidence            999998654444556899999999999999      99999999999999998877666554433 346678888885

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.96  E-value=1.7e-29  Score=220.10  Aligned_cols=140  Identities=24%  Similarity=0.304  Sum_probs=123.4

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      +||||+++|||||||||+|.+|+||||+++..+     .+++||||++.+++++++|+++|    ++.++|||+++++++
T Consensus       175 ~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g----~v~r~~lGv~~~~~~  250 (436)
T 4a8c_A          175 FIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG----EIKRGLLGIKGTEMS  250 (436)
T ss_pred             EEEEcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhcc----ccccccCceEecccC
Confidence            589999999999999999999999999998865     47999999999999999999999    899999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i  153 (169)
                      +++++.++++.      ..|++|.+|.++|||+      ++||++||+|+++|+..+.+..++...  .......+.+.+
T Consensus       251 ~~~a~~~gl~~------~~G~~V~~V~~~spA~------~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v  318 (436)
T 4a8c_A          251 ADIAKAFNLDV------QRGAFVSEVLPGSGSA------KAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL  318 (436)
T ss_pred             HHHHHHhCCCC------CcceEEEEECCCChHH------HCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999852      4799999999999999      999999999999998887766554433  233456778888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|.
T Consensus       319 ~R~  321 (436)
T 4a8c_A          319 LRN  321 (436)
T ss_pred             EEC
Confidence            885

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.96  E-value=7.9e-29  Score=207.46  Aligned_cols=140  Identities=26%  Similarity=0.342  Sum_probs=121.8

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--------CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEE
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--------AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITML   72 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--------~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~   72 (169)
                      ++|+|++++||||||||+|.+|+||||++....        .+++||||++.+++++++|++++    ++.++|||+.++
T Consensus       153 ~i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g----~~~~~~lGi~~~  228 (318)
T 1te0_A          153 FLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----RVIRGYIGIGGR  228 (318)
T ss_dssp             SEEESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS----SCCCEECCEEEE
T ss_pred             EEEECCCCCCCCCcCceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcC----CcccccceeEee
Confidence            689999999999999999999999999998753        47899999999999999999998    788999999999


Q ss_pred             ECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc--CCCCeeE
Q psy18070         73 TLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI--NHPSITC  150 (169)
Q Consensus        73 ~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~--~~~~~~~  150 (169)
                      ++++++++.++++      ...|++|.+|.++|||+      ++||++||+|+++|+.++.+..++.....  .....+.
T Consensus       229 ~~~~~~~~~~g~~------~~~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~  296 (318)
T 1te0_A          229 EIAPLHAQGGGID------QLQGIVVNEVSPDGPAA------NAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIP  296 (318)
T ss_dssp             ECSCCCSSSSCSS------SCCCEEEEEECTTSTTT------TTCCCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEE
T ss_pred             ecchhHHHhccCC------CCCcEEEEEeCCCChHH------HCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEE
Confidence            9998888887763      33799999999999999      99999999999999988877655543333  3455779


Q ss_pred             EEEEEe
Q psy18070        151 HILLRL  156 (169)
Q Consensus       151 ~~i~r~  156 (169)
                      +.++|.
T Consensus       297 l~v~R~  302 (318)
T 1te0_A          297 VVVMRD  302 (318)
T ss_dssp             EEEESS
T ss_pred             EEEEEC
Confidence            999885

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.96  E-value=4.4e-29  Score=218.41  Aligned_cols=140  Identities=29%  Similarity=0.330  Sum_probs=122.5

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      +|||||++|||||||||+|.+|+||||+++..+     .+++||||++.+++++++|+++|    ++.++|||+++++++
T Consensus       198 ~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g----~v~~~~LGv~~~~~~  273 (448)
T 1ky9_A          198 FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYG----QVKRGELGIMGTELN  273 (448)
T ss_dssp             CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHHHS----SCCBCCCCCSCCCTT
T ss_pred             EEEEcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccceeeeeecccchhhHHHHhhhc----ccceecccccccccc
Confidence            689999999999999999999999999998764     47999999999999999999999    889999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc--CCCCeeEEEE
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI--NHPSITCHIL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i  153 (169)
                      +++++.++++      ...|++|.+|.++|||+      ++||++||+|+++++..+.+..++.....  +....+.+.+
T Consensus       274 ~~~a~~lgl~------~~~G~~V~~V~~gspA~------~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v  341 (448)
T 1ky9_A          274 SELAKAMKVD------AQRGAFVSQVLPNSSAA------KAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGL  341 (448)
T ss_dssp             SHHHHTSCCT------TCCSEECCCCTTCSSST------TTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEE
T ss_pred             HHHHHHhCCC------CCCceEEEEeccCCHHH------HcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999884      23799999999999999      99999999999998888776655543333  3345668888


Q ss_pred             EEe
Q psy18070        154 LRL  156 (169)
Q Consensus       154 ~r~  156 (169)
                      +|.
T Consensus       342 ~R~  344 (448)
T 1ky9_A          342 LRD  344 (448)
T ss_dssp             ESS
T ss_pred             EEC
Confidence            885

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.95  E-value=2.1e-28  Score=205.99  Aligned_cols=149  Identities=37%  Similarity=0.545  Sum_probs=51.2

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeeccCCeEEEEehhhHHHHHHhhhhcCC-ccceeecceecEEEEECCHHHH
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKDI-DRTITHKKYIGITMLTLNEKLI   79 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~~~i~~~l~~l~~~g~-~~~~~~~~~lGi~~~~l~~~~~   79 (169)
                      ++|+|++++||||||||+|.+|+||||++....++++||||++.++++++++.+... +.+.+.++|||+.+.+++++.+
T Consensus       160 ~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~g~~~aip~~~i~~~l~~~~~~~~~g~~~~~r~~lGi~~~~~~~~~~  239 (332)
T 3num_A          160 YIQTDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKA  239 (332)
T ss_dssp             CEEESSCCCTTTTTSEEEETTSCEEEEEEEEEETTEEEEEEHHHHHHHHHHHCC--------------------------
T ss_pred             EEEEECCcCCCCcHHHhhCCCCcEEEEEeeEecccceEEECHHHHHHHHHHHhhhhccCcccccccccceEEEecCHHHh
Confidence            589999999999999999999999999999988999999999999999999863210 0124678999999999998888


Q ss_pred             HHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         80 EQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        80 ~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ++++......+....|++|.+|.++|||+      ++||++||+|+++++.++.+..++... +.....+.+.+.|.
T Consensus       240 ~~~~~~~~~~~~~~~g~~V~~v~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~-l~~~~~v~l~v~R~  309 (332)
T 3num_A          240 KELKDRHRDFPDVISGAYIIEVIPDTPAE------AGGLKENDVIISINGQSVVSANDVSDV-IKRESTLNMVVRRG  309 (332)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             hhhhhhccccCCCCCceEEEEeccCCChH------HcCCCCCCEEEEECCEECCCHHHHHHH-HhCCCeEEEEEEEC
Confidence            87765433334455799999999999999      999999999999888877554444332 23345567888875

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.94  E-value=2.7e-27  Score=200.63  Aligned_cols=135  Identities=26%  Similarity=0.312  Sum_probs=113.4

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLN   75 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~   75 (169)
                      ++|+|++++||||||||+|.+|+||||+++...     ++++||||++.++++++++++++    ++.++|||+++.+..
T Consensus       168 ~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g----~~~~~~lGi~~~~~~  243 (348)
T 3qo6_A          168 VIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFG----KVTRPILGIKFAPDQ  243 (348)
T ss_dssp             EEEECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHS----SCCCEECCCEECCTT
T ss_pred             EEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCC----ceeeeecCcEEccch
Confidence            489999999999999999999999999998863     57999999999999999999999    889999999997532


Q ss_pred             HHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCC-----------CcEEEecCceeecchhhhhhhh--
Q psy18070         76 EKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP-----------TSSRLLGECLAQYTTSKLVVWS--  142 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~-----------GDvI~~~~~v~~~~~~~~~~~~--  142 (169)
                        ..++++.         .|++|.+|.++|||+      +|||++           ||+|+++|+.++.+..++....  
T Consensus       244 --~~~~~~~---------~Gv~V~~V~~~spA~------~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~~  306 (348)
T 3qo6_A          244 --SVEQLGV---------SGVLVLDAPPSGPAG------KAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQ  306 (348)
T ss_dssp             --TTTTTTC---------SSEEEEECCSSSHHH------HHTCCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHTT
T ss_pred             --hhhhcCC---------ceEEEEEecCCChHH------HcCCccccccccCCCCCCCEEEEECCEEeCCHHHHHHHHHh
Confidence              2233332         699999999999999      999999           9999998888777665554433  


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      .+....+.+.++|.
T Consensus       307 ~~~g~~v~l~v~R~  320 (348)
T 3qo6_A          307 CKVGDEVTVEVLRG  320 (348)
T ss_dssp             CCTTCEEEEEEECS
T ss_pred             CCCcCEEEEEEEEC
Confidence            23345679999985

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.94  E-value=4.7e-26  Score=190.78  Aligned_cols=129  Identities=23%  Similarity=0.270  Sum_probs=110.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc------------CCeEEEEehhhHHHHHHhhhhcCCccceeecceec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT------------AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIG   68 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~------------~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lG   68 (169)
                      +||+|+++++|||||||+|.+|+||||+++...            ++++||||++.+++++++|+++|    ++.++|||
T Consensus       157 ~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g----~~~~~~lG  232 (324)
T 1y8t_A          157 AIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG----KASHASLG  232 (324)
T ss_dssp             EEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS----CCCCEECC
T ss_pred             EEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcC----Cccccccc
Confidence            589999999999999999999999999998653            36899999999999999999998    78899999


Q ss_pred             EEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc--CCC
Q psy18070         69 ITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI--NHP  146 (169)
Q Consensus        69 i~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~--~~~  146 (169)
                      +.+...+                ...|++|.+|.++|||+      ++|||+||+|+++++.++.+..++.....  ...
T Consensus       233 i~~~~~~----------------~~~g~~V~~v~~~spA~------~aGl~~GD~I~~ing~~v~~~~~l~~~l~~~~~g  290 (324)
T 1y8t_A          233 VQVTNDK----------------DTLGAKIVEVVAGGAAA------NAGVPKGVVVTKVDDRPINSADALVAAVRSKAPG  290 (324)
T ss_dssp             EEEESCS----------------SSSSEEEEEECTTSTTT------TTTCCTTCEEEEETTEECCSHHHHHHHHHTSCTT
T ss_pred             eEeeecc----------------CCCceEEEEECCCChHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCC
Confidence            9997531                13799999999999999      99999999999999988877655543332  335


Q ss_pred             CeeEEEEEE
Q psy18070        147 SITCHILLR  155 (169)
Q Consensus       147 ~~~~~~i~r  155 (169)
                      ..+.+.++|
T Consensus       291 ~~v~l~v~R  299 (324)
T 1y8t_A          291 ATVALTFQD  299 (324)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEEE
Confidence            567899988

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.74  E-value=9.5e-19  Score=129.83  Aligned_cols=108  Identities=20%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             CCeEEEEehhhHHHHHHhhhhcCCccceeecceecEEEEECCH---HHHHHhhcccCCCCCCCCcEEEEEEccCCccccc
Q psy18070         34 AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNE---KLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFI  110 (169)
Q Consensus        34 ~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~~---~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~  110 (169)
                      +|+|||||++.+++++++|+++|    ++.++|||+.++++++   ++++.++++.    ....|++|.+|.++|||+  
T Consensus         2 ~GigFAIP~~~~~~v~~~L~~~G----~v~r~~LGv~~~~~~~~~~~~~~~lgl~~----~~~~g~~V~~V~~~spA~--   71 (134)
T 2l97_A            2 EGLGFAIPANDAINIIEQLEKNG----KVTRPALGIQMVNLSNVSTSDIRRLNIPS----NVTSGVIVRSVQSNMPAN--   71 (134)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCC----CSSCCCCCCEEEESSSSCHHHHHHHSSCS----SSCSCEEEEECSTTSGGG--
T ss_pred             CcEEEEeEHHHHHHHHHHHHHcC----CEeeeEeeEEEEECCchhHHHHHHcCCCc----CCCCCEEEEEECCCCchH--
Confidence            68999999999999999999999    8899999999999875   7888888741    134799999999999998  


Q ss_pred             ccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEEEEe
Q psy18070        111 KFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHILLRL  156 (169)
Q Consensus       111 ~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~r~  156 (169)
                           +||++||+|+++|+.++.+..++...  ..+....+.+.+.|+
T Consensus        72 -----aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~  114 (134)
T 2l97_A           72 -----GHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRN  114 (134)
T ss_dssp             -----TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEET
T ss_pred             -----HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence                 89999999999999888776554433  222355678889885

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.70  E-value=1.1e-17  Score=135.15  Aligned_cols=65  Identities=42%  Similarity=0.726  Sum_probs=50.9

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHHHhhhhcCCccceeecceecE
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKYIGI   69 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~lGi   69 (169)
                      +||||++++||||||||+|.+|+||||+++...    .+++||||++.+++++++|+++|    ++.|+|||+
T Consensus       171 ~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g----~v~r~~lGv  239 (239)
T 1l1j_A          171 LIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQK----KVEKAYLGV  239 (239)
T ss_dssp             EEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC---------------
T ss_pred             EEEECCCCCCCCccHHhccCCCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCC----CCccceeCc
Confidence            589999999999999999999999999998764    47999999999999999999999    889999996

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.60  E-value=6e-16  Score=125.54  Aligned_cols=62  Identities=35%  Similarity=0.513  Sum_probs=54.0

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcCCccceeecce
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKY   66 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~   66 (169)
                      ++|+|++++||||||||+|.+|+||||+++..+     .+++||||++.+++++++|+++|    +..++|
T Consensus       175 ~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g----~~~~~~  241 (245)
T 3sti_A          175 FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG----EILEHH  241 (245)
T ss_dssp             CEEESSCCCTTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHH----HHC---
T ss_pred             EEEEcCCcCCCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcC----CCCCcc
Confidence            589999999999999999999999999998764     57999999999999999999998    555554

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.53  E-value=1e-14  Score=116.98  Aligned_cols=62  Identities=35%  Similarity=0.581  Sum_probs=54.3

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--------CCeEEEEehhhHHHHHHhhhhcCCccceeecce
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--------AGISFAIPIDYAIEFLTNYKRKDIDRTITHKKY   66 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--------~~~~faiP~~~i~~~l~~l~~~g~~~~~~~~~~   66 (169)
                      ++|+|++++||||||||+|.+|+||||+++.+.        ++++||||++.+++++++|+++|    +..++|
T Consensus       164 ~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g----~~~~~~  233 (237)
T 3lgi_A          164 FLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----RVIRHH  233 (237)
T ss_dssp             CEEECSCCCTTCTTCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHS----SCCC--
T ss_pred             EEEEcCccCCCCchHHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcC----CCCCch
Confidence            589999999999999999999999999998653        46899999999999999999999    555544

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.51  E-value=7.7e-14  Score=99.68  Aligned_cols=89  Identities=27%  Similarity=0.320  Sum_probs=70.0

Q ss_pred             eeecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhh
Q psy18070         61 ITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVV  140 (169)
Q Consensus        61 ~~~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~  140 (169)
                      ++.|+|||+++.+++++++++++++...++....|++|.+|.++|||+      ++||++||+|+++|+.++.+..++..
T Consensus         2 ~v~r~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~   75 (113)
T 2pzd_A            2 SHMRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRPGDVILAIGEQMVQNAEDVYE   75 (113)
T ss_dssp             ---CEECCEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHH
T ss_pred             cccccEeEEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCHHHHHH
Confidence            678999999999999999999998543334456899999999999999      99999999999999988876655443


Q ss_pred             hhcCCCCeeEEEEEEe
Q psy18070        141 WSINHPSITCHILLRL  156 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r~  156 (169)
                      .... ...+.+.+.|+
T Consensus        76 ~l~~-~~~v~l~v~R~   90 (113)
T 2pzd_A           76 AVRT-QSQLAVQIRRG   90 (113)
T ss_dssp             HHHH-CSSEEEEEEET
T ss_pred             HHhC-CCeEEEEEEEC
Confidence            3222 45668888874

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.47  E-value=1.8e-13  Score=97.62  Aligned_cols=89  Identities=21%  Similarity=0.196  Sum_probs=71.4

Q ss_pred             eeecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhh
Q psy18070         61 ITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVV  140 (169)
Q Consensus        61 ~~~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~  140 (169)
                      ++.++|+|+++++++++++++++++....+....|++|.+|.++|||+      ++||++||+|+++|+.++.+..++..
T Consensus         2 ~v~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~   75 (112)
T 2p3w_A            2 SHMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQ------RGGIQDGDIIVKVNGRPLVDSSELQE   75 (112)
T ss_dssp             CCCEEECCEEEEECCHHHHHHHHHHCTTC--CCSSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHH
T ss_pred             CcccceeeEEEecCCHHHHHHhcccCcCcccCCCCeEEEEECCCChHH------HCCCCCCCEEEEECCEECCCHHHHHH
Confidence            678999999999999999999998643334445899999999999999      99999999999999988877655543


Q ss_pred             hhcCCCCeeEEEEEEe
Q psy18070        141 WSINHPSITCHILLRL  156 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r~  156 (169)
                      .. .....+.+.+.|.
T Consensus        76 ~l-~~g~~v~l~v~R~   90 (112)
T 2p3w_A           76 AV-LTESPLLLEVRRG   90 (112)
T ss_dssp             HH-HHCSSEEEEEEET
T ss_pred             HH-hCCCeEEEEEEEC
Confidence            33 3345667888874

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.31  E-value=1.9e-12  Score=103.41  Aligned_cols=56  Identities=25%  Similarity=0.388  Sum_probs=50.8

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      ++|+|+.+++|||||||+|.+|+||||+++...  ++++||||++.++++++++....
T Consensus       171 ~~~~~~~~~~GdSGGPLv~~~G~vvGI~s~~~~~~~~~~~aip~~~v~~~l~~~~~~~  228 (237)
T 3k6y_A          171 VYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQ  228 (237)
T ss_dssp             EEEEESCCCTTCTTCEEECTTSCEEEEEEEECSSSTTEEEEEEHHHHHGGGGGTTCCS
T ss_pred             EEEecCccCCCccHHHEECCCCEEEEEEEeeccCCCcEEEEEEHHHHHHHHHHccCCC
Confidence            478999999999999999999999999998764  57999999999999999996555

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=1.2e-10  Score=81.38  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=54.4

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLV  139 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~  139 (169)
                      .++++|+++...++...+.++.      ....|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..++.
T Consensus        14 ~~~~lG~~~~~~~~~~~~~~~~------~~~~g~~V~~V~~~spA~------~aG~l~~GD~I~~ing~~v~~~~~~~~~   81 (103)
T 2fcf_A           14 PSKSLGISIVGGRGMGSRLSNG------EVMRGIFIKHVLEDSPAG------KNGTLKPGDRIVEVDGMDLRDASHEQAV   81 (103)
T ss_dssp             C-CCCCEEEECCCC-------------------EEEEEECSSSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCceeEEEEccCCCCcccccC------CCCCCEEEEEeCCCCcHH------HcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4578999998877655554433      223699999999999999      999 99999999999998876  44444


Q ss_pred             hhhcCCCCeeEEEEEEe
Q psy18070        140 VWSINHPSITCHILLRL  156 (169)
Q Consensus       140 ~~~~~~~~~~~~~i~r~  156 (169)
                      ......+..+.+.+.|.
T Consensus        82 ~~l~~~~~~v~l~v~r~   98 (103)
T 2fcf_A           82 EAIRKAGNPVVFMVQSI   98 (103)
T ss_dssp             HHHHTCCSSEEEEEECC
T ss_pred             HHHHhCCCcEEEEEEEC
Confidence            33334455667777663

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.06  E-value=3.3e-10  Score=82.40  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLV  139 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~  139 (169)
                      .++++|+++...++...+.++.      ....|++|.+|.++|||+      ++| |++||+|+++|+.++.+  ..+..
T Consensus        34 ~~~~lGi~v~~~~~~~~~~~~~------~~~~gv~V~~V~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~  101 (123)
T 2iwq_A           34 PSKSLGISIVGGRGMGSRLSNG------EVMRGIFIKHVLEDSPAG------KNGTLKPGDRIVEVDGMDLRDASHEQAV  101 (123)
T ss_dssp             TTSCCSEEEEECC---------------CCCCSEEEEEECSSSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCCccEEEEeccCcccccccc------CCCCCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4578999999887766554433      234699999999999999      999 99999999999998866  44444


Q ss_pred             hhhcCCCCeeEEEEEEe
Q psy18070        140 VWSINHPSITCHILLRL  156 (169)
Q Consensus       140 ~~~~~~~~~~~~~i~r~  156 (169)
                      ......+..+.+.+.|.
T Consensus       102 ~~l~~~~~~v~l~v~r~  118 (123)
T 2iwq_A          102 EAIRKAGNPVVFMVQSI  118 (123)
T ss_dssp             HHHHHCCSSEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEEC
Confidence            33333345667777663

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.01  E-value=1.3e-10  Score=77.32  Aligned_cols=77  Identities=10%  Similarity=0.006  Sum_probs=57.1

Q ss_pred             cEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcC
Q psy18070         68 GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSIN  144 (169)
Q Consensus        68 Gi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~  144 (169)
                      |+++..++++..+.+++..      ..|++|.+|.++|||+      ++| |++||+|+++|+.++.  +..+.......
T Consensus         1 G~~~~~~~~~~~~~~g~~~------~~gv~V~~v~~~s~A~------~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   68 (81)
T 2rcz_A            1 GSKVTLVKSRKNEEYGLRL------ASHIFVKEISQDSLAA------RDGNIQEGDVVLKINGTVTENMSLTDAKTLIER   68 (81)
T ss_dssp             CEEEEEECCSTTCCCCEEE------EEEEEEEEECTTSHHH------HHSSCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCCCEEE------eCCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            6677777777777776631      1689999999999999      999 9999999999998877  55555433333


Q ss_pred             CCCeeEEEEEEe
Q psy18070        145 HPSITCHILLRL  156 (169)
Q Consensus       145 ~~~~~~~~i~r~  156 (169)
                      ....+.+.+.|.
T Consensus        69 ~~~~v~l~v~R~   80 (81)
T 2rcz_A           69 SKGKLKMVVQRD   80 (81)
T ss_dssp             STTEEEEEEEC-
T ss_pred             CCCeEEEEEEeC
Confidence            444667777663

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.98  E-value=3.9e-10  Score=83.74  Aligned_cols=84  Identities=12%  Similarity=0.106  Sum_probs=59.3

Q ss_pred             eeecceecEEEEEC---CHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--h
Q psy18070         61 ITHKKYIGITMLTL---NEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--T  135 (169)
Q Consensus        61 ~~~~~~lGi~~~~l---~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~  135 (169)
                      ...++++|+++...   ++.. +.++..     +...|++|.+|.++|||+      ++||++||+|+++|+..+.+  .
T Consensus        34 ~~~~~~lG~~i~~g~~~~~~~-~~~~~~-----~~~~gv~V~~V~~~spA~------~aGL~~GD~I~~vng~~v~~~~~  101 (139)
T 2vz5_A           34 QGENLILGFSIGGGIDQDPSQ-NPFSED-----KTDKGIYVTRVSEGGPAE------IAGLQIGDKIMQVNGWDMTMVTH  101 (139)
T ss_dssp             ETTEEECSEEEEECTTSCGGG-CSSCSS-----TTCCCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCH
T ss_pred             CCCcccccEEEEccccCChhh-hhhccc-----CCCCCEEEEEECCCCHHH------HCCCCCCCEEEEECCEEcCCCCH
Confidence            66788999998652   2221 122211     234799999999999999      99999999999999998874  3


Q ss_pred             hhhhhhhcCC-CCeeEEEEEEe
Q psy18070        136 SKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus       136 ~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .++....... ...+.+.+.|.
T Consensus       102 ~~~~~~l~~~~g~~v~l~v~R~  123 (139)
T 2vz5_A          102 DQARKRLTKRSEEVVRLLVTRQ  123 (139)
T ss_dssp             HHHHHHHCCTTCSEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCEEEEEEEEC
Confidence            3333332233 35678888885

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.4e-09  Score=75.82  Aligned_cols=73  Identities=18%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVW  141 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~  141 (169)
                      ..+++|+++...++               ...|++|.+|.++|||+      ++||++||+|+++|+.++.+. .+..+.
T Consensus        20 ~~~~lG~~~~~~~~---------------~~~gv~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~   78 (100)
T 2eeh_A           20 PAGRLGFSVRGGSE---------------HGLGIFVSKVEEGSSAE------RAGLCVGDKITEVNGLSLESTTMGSAVK   78 (100)
T ss_dssp             SSSSCSEEEECCTT---------------TTCCEEEEEECTTSHHH------HHTCCSSCEEEEETTEECSSCCHHHHHH
T ss_pred             CCCCccEEEEcccc---------------CCCCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            44789999987531               12699999999999999      999999999999999887664 233333


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .++....+.+.+.|.
T Consensus        79 ~~~~~~~v~l~v~R~   93 (100)
T 2eeh_A           79 VLTSSSRLHMMVRRM   93 (100)
T ss_dssp             HHHSCSSEEEEEEEC
T ss_pred             hhcCCCEEEEEEEEC
Confidence            344466778888875

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=1.9e-10  Score=82.46  Aligned_cols=89  Identities=11%  Similarity=0.007  Sum_probs=62.4

Q ss_pred             hhhcCCccceeeccee----cEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEec
Q psy18070         52 YKRKDIDRTITHKKYI----GITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLG  127 (169)
Q Consensus        52 l~~~g~~~~~~~~~~l----Gi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~  127 (169)
                      +++++    ++.++|+    |+.+...+.    .+++.-.  .....|++|.+|.++|||+      ++||++||+|+++
T Consensus         6 ~~~~g----~v~r~~l~~~~~v~l~~~~~----~lG~~~~--~~~~~gv~V~~V~~~spA~------~aGL~~GD~Il~v   69 (117)
T 1uit_A            6 SGGER----RKDRPYVEEPRHVKVQKGSE----PLGISIV--SGEKGGIYVSKVTVGSIAH------QAGLEYGDQLLEF   69 (117)
T ss_dssp             CCCCC----CSCCCCSCCCEEEEEECSSC----CCCEEEE--ECTTSCEEEEEECTTSHHH------HHTCCTTCEECEE
T ss_pred             ccccC----ccccccCCCCEEEEEEeCCC----CccEEEE--ccCCCCEEEEEECCCCHHH------HcCCCCCCEEEEE
Confidence            44556    7899999    999876542    2232110  0123699999999999999      9999999999999


Q ss_pred             Cceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070        128 ECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus       128 ~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      |+..+.+.  .+...........+.+.+.|.
T Consensus        70 ng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~  100 (117)
T 1uit_A           70 NGINLRSATEQQARLIIGQQCDTITILAQYN  100 (117)
T ss_dssp             TTEETTTCCHHHHHHHTTSCCSEEEEEECCC
T ss_pred             CCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            99887654  333333334455668888775

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=98.95  E-value=8.4e-10  Score=86.41  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      ++++|+.+.+|+|||||+|.+|+||||++....    ++.+|++|++.++++++...++-
T Consensus       146 ~i~~~~~~~~GdSGGPlv~~~g~lvGI~s~g~~~~~~~~~~~~~~~~~i~~f~~~~~~~~  205 (210)
T 2as9_A          146 ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQH  205 (210)
T ss_dssp             EEEEECCCCTTCTTCEEECTTSCEEEEECCSCCCTTCSSEEEEECCHHHHHHHHTTCCCS
T ss_pred             eEEEcCccCCCCccCcEECCCCeEEEEEecccccCCccccccEEEcHHHHHHHHHhhhhh
Confidence            478999999999999999999999999998764    46789999999999999877654

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.92  E-value=1.4e-09  Score=75.98  Aligned_cols=83  Identities=11%  Similarity=0.124  Sum_probs=55.4

Q ss_pred             ecceecEEEE-ECCHHHHH-HhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh--hh
Q psy18070         63 HKKYIGITML-TLNEKLIE-QLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS--KL  138 (169)
Q Consensus        63 ~~~~lGi~~~-~l~~~~~~-~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~--~~  138 (169)
                      .++++|+++. ..+.+..+ .+..     .....|++|.+|.++|||+      ++||++||+|+++|+..+.+..  +.
T Consensus        17 ~~~~lG~~i~g~~~~~~~~~~~~~-----~~~~~gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A           17 ENLILGFSIGGGIDQDPSQNPFSE-----DKTDKGIYVTRVSEGGPAE------IAGLQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             TEEECSEEEEECTTSCGGGCSSCS-----STTCCSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CCCcccEEEECccccCcccccccc-----CCCCCCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHH
Confidence            4568999998 33221111 1110     1234799999999999999      9999999999999998875532  33


Q ss_pred             hhhhcC-CCCeeEEEEEEe
Q psy18070        139 VVWSIN-HPSITCHILLRL  156 (169)
Q Consensus       139 ~~~~~~-~~~~~~~~i~r~  156 (169)
                      ...... ....+.+.+.|+
T Consensus        86 ~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           86 RKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEEcC
Confidence            322222 345668888774

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.91  E-value=1.5e-09  Score=73.97  Aligned_cols=70  Identities=11%  Similarity=-0.014  Sum_probs=51.6

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceee--cchhhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQ--YTTSKLVV  140 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~--~~~~~~~~  140 (169)
                      .++++|+++..-                  ..|++|.+|.++|||+      ++||++||+|+++|+.++  .+..++..
T Consensus        15 ~~~~lG~~~~~~------------------~~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~   70 (90)
T 2eaq_A           15 KSLDFGFTIKWD------------------IPGIFVASVEAGSPAE------FSQLQVDDEIIAINNTKFSYNDSKEWEE   70 (90)
T ss_dssp             CSSCCSEEEEEE------------------TTEEEEEEECTTSHHH------HTTCCTTCEEEEETTEECCTTCHHHHHH
T ss_pred             CCCcccEEEEec------------------CCCEEEEEECCCChHH------HcCCCCCCEEEEECCEEccCCCHHHHHH
Confidence            345789888631                  1599999999999999      999999999999999888  44444332


Q ss_pred             hhc--CCCCeeEEEEEEe
Q psy18070        141 WSI--NHPSITCHILLRL  156 (169)
Q Consensus       141 ~~~--~~~~~~~~~i~r~  156 (169)
                      ...  .....+.+.+.|.
T Consensus        71 ~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           71 AMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             HHHHHHHHTEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEEEEeC
Confidence            222  2345667777774

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.87  E-value=8e-09  Score=71.10  Aligned_cols=79  Identities=18%  Similarity=0.073  Sum_probs=56.2

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh--hhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK--LVV  140 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~--~~~  140 (169)
                      ...++|+++..-...         ........|++|.+|.++|||+      ++||++||+|+++|+.++.+..+  ...
T Consensus        12 ~~~glG~~i~~g~~~---------~~~~~~~~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~   76 (97)
T 2w4f_A           12 QTGGLGISIAGGKGS---------TPYKGDDEGIFISRVSEEGPAA------RAGVRVGDKLLEVNGVALQGAEHHEAVE   76 (97)
T ss_dssp             BTTBSSEEEEECTTS---------CCSBTTBCSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCceeEEEECCccC---------CcccCCCCCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCcCHHHHHH
Confidence            357899998753211         0000234799999999999999      99999999999999988776433  333


Q ss_pred             hhcCCCCeeEEEEEEe
Q psy18070        141 WSINHPSITCHILLRL  156 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r~  156 (169)
                      ........+.+.+.|.
T Consensus        77 ~~~~~g~~v~l~v~R~   92 (97)
T 2w4f_A           77 ALRGAGTAVQMRVWRE   92 (97)
T ss_dssp             HHHTSCSEEEEEEECC
T ss_pred             HHhCCCCeEEEEEEeC
Confidence            3334566778888874

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=73.34  Aligned_cols=57  Identities=11%  Similarity=-0.020  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        23 ~gv~V~~v~~~s~A~------~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~   82 (92)
T 3cyy_A           23 SHIFVKEISQDSLAA------RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   82 (92)
T ss_dssp             EEEEEEEECTTCHHH------HSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC-
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence            589999999999999      999 9999999999998877  55555433333445667888774

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.82  E-value=1.4e-08  Score=69.16  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=45.2

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        28 ~gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~   86 (90)
T 2he4_A           28 PGQYIRSVDPGSPAA------RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP   86 (90)
T ss_dssp             SSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECC
T ss_pred             CCEEEEEECCCChHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcc
Confidence            699999999999999      999999999999999887765  444433333456667777764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.81  E-value=9.7e-09  Score=70.59  Aligned_cols=70  Identities=13%  Similarity=0.042  Sum_probs=52.4

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~  141 (169)
                      ..+|+++....                ...|++|.+|.++|||+      ++| |++||+|+++|+.++.+.  .+....
T Consensus        16 ~~lG~~~~~~~----------------~~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   73 (95)
T 2vwr_A           16 EQLGIKLVRRT----------------DEPGVFILDLLEGGLAA------QDGRLSSNDRVLAINGHDLKYGTPELAAQI   73 (95)
T ss_dssp             CCCCEEEEECS----------------SSCSEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CcccEEEEecc----------------CCCCEEEEEeCCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34788887542                12699999999999999      999 999999999999887553  333333


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .......+.+.+.|.
T Consensus        74 ~~~~g~~v~l~v~R~   88 (95)
T 2vwr_A           74 IQASGERVNLTIARP   88 (95)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             HHcCCCEEEEEEEcC
Confidence            333456678888875

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=6.9e-09  Score=75.13  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchhhhhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSKLVVWS  142 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~~~~~~  142 (169)
                      ..++|+++..+++.             ....|++|.+|.++|||+      ++| |++||+|+++++..+.+..++....
T Consensus        31 ~~~lG~~~~~~~~~-------------~~~~gv~V~~V~~~spA~------~aG~l~~GD~I~~ing~~v~~~~~~~~~l   91 (124)
T 1wh1_A           31 QDKLGLTVCYRTDD-------------EDDIGIYISEIDPNSIAA------KDGRIREGDRIIQINGIEVQNREEAVALL   91 (124)
T ss_dssp             TCCCCEEEECCCCC-------------SSCCCEEEEEECSSSHHH------HTCCCCTTCEEEEESSCBCCSHHHHHHHH
T ss_pred             CCcccEEEEecCCC-------------CCCCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCHHHHHHHH
Confidence            45799999877543             112699999999999999      999 9999999999988877655544333


Q ss_pred             cCC-CCeeEEEEEEeeE
Q psy18070        143 INH-PSITCHILLRLYL  158 (169)
Q Consensus       143 ~~~-~~~~~~~i~r~~~  158 (169)
                      ... ...+.+.+.|.-.
T Consensus        92 ~~~~g~~v~l~v~R~g~  108 (124)
T 1wh1_A           92 TSEENKNFSLLIARPEL  108 (124)
T ss_dssp             TCSSCCSCCEEEEECSS
T ss_pred             HhCCCCEEEEEEEECCE
Confidence            333 4566888888643

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1.1e-08  Score=70.27  Aligned_cols=71  Identities=11%  Similarity=-0.024  Sum_probs=54.1

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee-cchhhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ-YTTSKLVV  140 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~-~~~~~~~~  140 (169)
                      ...++|+++..-                  ..|++|.+|.++|||+      ++| |++||+|+++|+..+ .+..++..
T Consensus        16 ~~~~lG~~i~~~------------------~~~v~V~~V~~~spA~------~ag~L~~GD~I~~ing~~v~~~~~~~~~   71 (91)
T 2e7k_A           16 AGEHLGVTFRVE------------------GGELVIARILHGGMVA------QQGLLHVGDIIKEVNGQPVGSDPRALQE   71 (91)
T ss_dssp             TTCCCCEEEEES------------------SSSEEEEEECSSSHHH------HHCCCCTTCEEEEETTEECTTCHHHHHH
T ss_pred             CCCcEeEEEEec------------------CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCHHHHHH
Confidence            346899999861                  1699999999999999      976 999999999999988 55555444


Q ss_pred             hhcCCCCeeEEEEEEee
Q psy18070        141 WSINHPSITCHILLRLY  157 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r~~  157 (169)
                      ........+.+.+.|.+
T Consensus        72 ~l~~~~~~v~l~v~~~~   88 (91)
T 2e7k_A           72 LLRNASGSVILKILSGP   88 (91)
T ss_dssp             HHHTCCSSBCEEEECCS
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            43344556677777653

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.78  E-value=2.6e-08  Score=67.81  Aligned_cols=56  Identities=16%  Similarity=0.030  Sum_probs=42.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+  ..+........++...+.+.|
T Consensus        27 ~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~   84 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAE------KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD   84 (91)
T ss_dssp             SSEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEc
Confidence            699999999999999      99999999999999998876  344443333444555444444

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.78  E-value=1.7e-08  Score=68.80  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=44.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        32 ~gv~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGD------LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            699999999999999      999999999999999887764  233233333455667777764

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.77  E-value=7.5e-09  Score=72.93  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=67.4

Q ss_pred             hhhHHHHHHhhhhcCCccceeecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCC
Q psy18070         42 IDYAIEFLTNYKRKDIDRTITHKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPT  121 (169)
Q Consensus        42 ~~~i~~~l~~l~~~g~~~~~~~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~G  121 (169)
                      .+.++++.+++.+.+    ...+.++|+.....+               ....|+.|..+.|+|||+      ++||++|
T Consensus         4 ~~~~~~~~~~l~~~~----~~~~~~~g~~~~~~~---------------~~~~G~~V~~~~pas~A~------~aGl~~G   58 (105)
T 2i4s_A            4 EDKVDAIREAIARNP----QEIFQYVRLSQVKRD---------------DKVLGYRVSPGKDPVLFE------SIGLQDG   58 (105)
T ss_dssp             HHHHHHHHHHHHHSG----GGHHHHEEEEEEEET---------------TEEEEEEEEECSCTHHHH------HHTCCTT
T ss_pred             hHHHHHHHHHHHHCH----HHHHhhceeEEEecC---------------CcEEEEEEecCCCCCHHH------HcCCCCC
Confidence            467888999999998    788899999865321               111488888888888889      9999999


Q ss_pred             cEEEecCceeecchhhhh--hhhcCCCCeeEEEEEEe
Q psy18070        122 SSRLLGECLAQYTTSKLV--VWSINHPSITCHILLRL  156 (169)
Q Consensus       122 DvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~r~  156 (169)
                      |+|+++|+.++.+..++.  +........+.+.+.|+
T Consensus        59 DvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~   95 (105)
T 2i4s_A           59 DMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD   95 (105)
T ss_dssp             CEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEET
T ss_pred             CEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEEC
Confidence            999999988776654443  33334556778888885

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.76  E-value=1.7e-08  Score=71.19  Aligned_cols=78  Identities=18%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVW  141 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~  141 (169)
                      ...+|+++..-...         ........|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..+....
T Consensus        25 ~~glG~~i~~g~~~---------~~~~~~~~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~   89 (110)
T 1x5q_A           25 TGGLGISIAGGKGS---------TPYKGDDEGIFISRVSEEGPAA------RAGVRVGDKLLEVNGVALQGAEHHEAVEA   89 (110)
T ss_dssp             SSSCSEEEEECTTS---------CCSSTTCCSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCeeeEEEEccccC---------CccccCCCCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            46789988643210         0001234799999999999999      99999999999999998877  4444444


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .......+.+.+.|.
T Consensus        90 ~~~~g~~v~l~v~R~  104 (110)
T 1x5q_A           90 LRGAGTAVQMRVWRE  104 (110)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             hhCCCCeEEEEEEEC
Confidence            344566778888885

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.76  E-value=1.1e-08  Score=70.69  Aligned_cols=77  Identities=18%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWS  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~  142 (169)
                      .-+|+++...........        ....|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+.....
T Consensus        16 ~~~Gf~l~~~g~~~~~~~--------~~~~~~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l   81 (96)
T 2ego_A           16 QTFGFEIQTYGLHHREEQ--------RVEMVTFVARVHESSPAQ------LAGLTPGDTIASVNGLNVEGIRHREIVDII   81 (96)
T ss_dssp             CCCSEEEEEEEC---------------CCEEEEEEEECTTCHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCccEEEEeccccccCCC--------CCCCCeEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            357888875321111111        223699999999999999      999999999999999988762  3333332


Q ss_pred             cCCCCeeEEEEEE
Q psy18070        143 INHPSITCHILLR  155 (169)
Q Consensus       143 ~~~~~~~~~~i~r  155 (169)
                      ...+..+.+.+++
T Consensus        82 ~~~~~~v~l~v~~   94 (96)
T 2ego_A           82 KASGNVLRLETLY   94 (96)
T ss_dssp             HHTTTEEEEEEEC
T ss_pred             HhCCCeEEEEEEE
Confidence            2334566776654

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.76  E-value=1.6e-09  Score=78.99  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=57.9

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee--cchhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ--YTTSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~--~~~~~~~~~  141 (169)
                      ..+|+++...++..++.+++.      ...|++|.+|.++|||+      ++| |++||+|+++|+..+  .+..+....
T Consensus        42 ~~lG~~i~~~~~~~~~~~g~~------~~~gv~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~  109 (128)
T 1nf3_C           42 KPLGFYIRDGSSVRVTPHGLE------KVPGIFISRLVPGGLAQ------STGLLAVNDEVLEVNGIEVSGKSLDQVTDM  109 (128)
T ss_dssp             SCCCEEEEEEEEEEEETTEEE------EEEEEEEEEECTTCHHH------HHTCCCTTCEEEEETTEESTTCCHHHHHHH
T ss_pred             CCccEEEEccccccccccccC------CCCCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            458999987665444444432      12589999999999999      999 999999999999988  444444433


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .......+.+.+.|.
T Consensus       110 l~~~~~~v~l~v~r~  124 (128)
T 1nf3_C          110 MIANSRNLIITVRPA  124 (128)
T ss_dssp             HHHTTTSEEEEEECC
T ss_pred             HHcCCCeEEEEEEEC
Confidence            334445678887774

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.75  E-value=1.6e-08  Score=68.95  Aligned_cols=57  Identities=12%  Similarity=-0.124  Sum_probs=45.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+..  +...........+.+.+.|.
T Consensus        27 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   85 (91)
T 2pkt_A           27 QPLAISRVTPGSKAA------LANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS   85 (91)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEE
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            589999999999999      9999999999999998877654  44433333556678888875

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.75  E-value=1.8e-08  Score=68.17  Aligned_cols=57  Identities=14%  Similarity=0.036  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+  ..++.......+..+.+.+.|.
T Consensus        26 ~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   84 (87)
T 2pa1_A           26 TPIMVTKVAERGKAK------DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRI   84 (87)
T ss_dssp             EEEEEEEECSSSHHH------HTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            599999999999999      99999999999999998876  3444333333346778888875

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.73  E-value=1.7e-08  Score=69.21  Aligned_cols=57  Identities=19%  Similarity=0.115  Sum_probs=45.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+.  .+........+..+.+.++|+
T Consensus        29 ~~~~V~~v~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~   87 (95)
T 3r68_A           29 KGQIIKDIEPGSPAE------AAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK   87 (95)
T ss_dssp             CSEEEECCCTTSHHH------HHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECC
Confidence            499999999999999      999999999999999887766  555444444566666666664

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.73  E-value=1.9e-08  Score=69.22  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        30 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   88 (96)
T 2v90_A           30 PGQFLWEVDPGLPAK------KAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP   88 (96)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECC
T ss_pred             CCeEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence            699999999999999      99999999999999998877  3444433333456778888774

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.73  E-value=2.9e-08  Score=68.59  Aligned_cols=57  Identities=7%  Similarity=-0.203  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        31 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   90 (96)
T 2qkv_A           31 IGCTIADLIQGQYPE------IDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP   90 (96)
T ss_dssp             SSEEEEEECTTSCHH------HHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CcEEEEEeCCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence            689999999999999      999 99999999999998865  2333333334455678888775

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.72  E-value=2.1e-08  Score=70.14  Aligned_cols=57  Identities=7%  Similarity=-0.030  Sum_probs=42.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+.++.+  ..++..........+.+.+.+.
T Consensus        36 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~   95 (97)
T 2ejy_A           36 QSCTVARILHGGMIH------RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN   95 (97)
T ss_dssp             CCEEEEEECSSSHHH------HHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            599999999999999      999 99999999999888764  3333322222345556666543

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.72  E-value=3.1e-08  Score=68.96  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|+
T Consensus        35 ~gv~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   94 (104)
T 3i4w_A           35 EGIFISFILAGGPAD------LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK   94 (104)
T ss_dssp             CCEEEEEECTTSHHH------HHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            599999999999999      999 9999999999998874  44444444444455667777774

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.72  E-value=2.5e-08  Score=67.99  Aligned_cols=57  Identities=11%  Similarity=0.042  Sum_probs=44.1

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        29 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   88 (92)
T 2qg1_A           29 TGVFVSDIVKGGIAD------ADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI   88 (92)
T ss_dssp             CSCEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcc
Confidence            699999999999999      999 999999999999887653  233222223455678888775

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.71  E-value=4.7e-08  Score=71.00  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+.  .+......  .....+.+.+.|.
T Consensus        51 ~gv~V~~V~~gspA~------~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  111 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAA------KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK  111 (124)
T ss_dssp             SCEEEEEECTTCHHH------HTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            699999999999999      999999999999999887765  44433222  4556678888775

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.71  E-value=2.9e-08  Score=67.37  Aligned_cols=57  Identities=14%  Similarity=-0.141  Sum_probs=44.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+  ..+...........+.+.+.|.
T Consensus        27 ~~v~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   85 (89)
T 2q3g_A           27 VPLSISRLTPGGKAA------QAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRA   85 (89)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            589999999999999      99999999999999998774  2343333333455667888775

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.70  E-value=2.8e-08  Score=67.25  Aligned_cols=57  Identities=11%  Similarity=-0.116  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+.  .+...........+.+.+.|.
T Consensus        27 ~~~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   85 (88)
T 2uzc_A           27 MPLTISSLKDGGKAA------QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE   85 (88)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCeEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            589999999999999      999999999999999887665  343333333455667777764

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.69  E-value=1.7e-08  Score=67.78  Aligned_cols=57  Identities=11%  Similarity=-0.101  Sum_probs=43.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+.  .+...........+.+.+.|.
T Consensus        25 ~~v~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   83 (85)
T 1rgw_A           25 MPLTISRITPGSKAA------QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS   83 (85)
T ss_dssp             SCCBEEEECTTSHHH------HSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESC
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeC
Confidence            589999999999999      999999999999999887765  343333333344567777664

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.69  E-value=5.2e-08  Score=66.88  Aligned_cols=57  Identities=16%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      + ||++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        34 ~~gv~V~~V~~~spA~------~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   92 (95)
T 1mfg_A           34 DDGIFVTRVQPEGPAS------K-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE   92 (95)
T ss_dssp             CCCEEEEEECTTSTTT------T-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCchh------h-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeC
Confidence            4699999999999999      9 999999999999988865  3343333334456678888875

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.69  E-value=3e-08  Score=69.47  Aligned_cols=70  Identities=17%  Similarity=0.121  Sum_probs=51.6

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWS  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~  142 (169)
                      .++|+++..-.               ....|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..+.... 
T Consensus        27 ~~lG~~~~~~~---------------~~~~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~-   84 (104)
T 1wi2_A           27 AQLGFNIRGGK---------------ASQLGIFISKVIPDSDAH------RAGLQEGDQVLAVNDVDFQDIEHSKAVEI-   84 (104)
T ss_dssp             CCCSEEEECCS---------------SSCCCCEEEEECTTSHHH------HHTCCTTCEEEEETTEECSSCCHHHHHHH-
T ss_pred             CCccEEEEccc---------------CCCCCEEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHH-
Confidence            67899987521               122699999999999999      99999999999999988876  3333322 


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      ++....+.+.+.|.
T Consensus        85 l~~~~~v~l~v~r~   98 (104)
T 1wi2_A           85 LKTAREISMRVRFF   98 (104)
T ss_dssp             HHHSSSEEEEEECC
T ss_pred             HhCCCEEEEEEEEC
Confidence            22245667777664

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.69  E-value=2.9e-08  Score=74.95  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh-hhh-
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK-LVV-  140 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~-~~~-  140 (169)
                      .++|+|+++...+                  .|++|.+|.++|||+      +|||++||+|+++|+.++.+..+ ... 
T Consensus        14 ~~~~lG~~~~~~~------------------~g~~V~~v~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~   69 (166)
T 1w9e_A           14 QDGKIGLRLKSID------------------NGIFVQLVQANSPAS------LVGLRFGDQVLQINGENCAGWSSDKAHK   69 (166)
T ss_dssp             TTSCCSEEEEEET------------------TEEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCcEeEEEEeCC------------------CCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            5689999998642                  699999999999999      99999999999999988776544 332 


Q ss_pred             -hhcCCCCeeEEEEEEe
Q psy18070        141 -WSINHPSITCHILLRL  156 (169)
Q Consensus       141 -~~~~~~~~~~~~i~r~  156 (169)
                       ........+.+.+.|.
T Consensus        70 ~~~~~~~~~v~l~vr~~   86 (166)
T 1w9e_A           70 VLKQAFGEKITMTIRDR   86 (166)
T ss_dssp             HHHHCCSSEEEEEEECC
T ss_pred             HHhcCCCCEEEEEEEcC
Confidence             2222344667777443

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.66  E-value=5.5e-08  Score=66.76  Aligned_cols=57  Identities=23%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhh-hhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSK-LVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~-~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+... ..+..++....+.+.+.|.
T Consensus        29 ~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~   86 (93)
T 2dls_A           29 RIVLVQSVRPGGAAM------KAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGS   86 (93)
T ss_dssp             SSCEEEEECSSSTTT------TTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEEC
Confidence            589999999999999      99999999999999988766422 2333445566778888875

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.66  E-value=3.5e-08  Score=66.98  Aligned_cols=57  Identities=7%  Similarity=0.001  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCC--CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINH--PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~--~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+........  ...+.+.+.|.
T Consensus        27 ~~~~V~~V~~~spA~------~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           27 EPIYIGHIVPLGAAD------TDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             SCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            579999999999999      999 9999999999999883  344433322222  23678887775

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.66  E-value=2.7e-08  Score=68.62  Aligned_cols=57  Identities=14%  Similarity=0.060  Sum_probs=45.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+.++.+.  .+...........+.+.+.|.
T Consensus        37 ~g~~V~~V~~~spA~------~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   96 (98)
T 1ihj_A           37 TGIFIKGIVPDSPAH------LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTF   96 (98)
T ss_dssp             EEEEEEEECTTSHHH------HHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeC
Confidence            699999999999999      999 999999999999987764  444333333456778888874

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.66  E-value=3.6e-08  Score=68.07  Aligned_cols=56  Identities=16%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCC-eeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPS-ITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~-~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..++.......++ .+.+.+.|
T Consensus        33 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R   91 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAE------ASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR   91 (98)
T ss_dssp             SCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCH
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEEC
Confidence            599999999999999      99999999999999998876  4444433333333 33455554

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.66  E-value=2.7e-08  Score=68.87  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=45.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        34 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   92 (99)
T 3khf_A           34 VHHVVWSVEDGSPAQ------EAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL   92 (99)
T ss_dssp             EEEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECS
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEEC
Confidence            488999999999999      9999999999999999887  44554444344556778888773

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.66  E-value=3e-08  Score=68.90  Aligned_cols=72  Identities=13%  Similarity=0.023  Sum_probs=52.8

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh-hhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV-VWS  142 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~-~~~  142 (169)
                      ...+|+++....+               ...|++|.+|.++|||+      ++||++||+|+++|+..+.+..+.. +..
T Consensus        20 ~~~lG~~~~~~~~---------------~~~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~   78 (101)
T 1uez_A           20 HEGLGFSIRGGSE---------------HGVGIYVSLVEPGSLAE------KEGLRVGDQILRVNDKSLARVTHAEAVKA   78 (101)
T ss_dssp             TTCSSEEEEECTT---------------TTCCEEEEEECTTSHHH------HHTCCSSCCEEEETTEECSSCCHHHHHHH
T ss_pred             CCcccEEEeCCCC---------------CCCCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCcCHHHHHHh
Confidence            3468999876432               12699999999999999      9999999999999988876654433 333


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      .+....+.+.+.|.
T Consensus        79 ~~~~~~v~l~v~R~   92 (101)
T 1uez_A           79 LKGSKKLVLSVYSA   92 (101)
T ss_dssp             SSSSSSCCEEECCC
T ss_pred             hcCCCeEEEEEEEC
Confidence            34445567777764

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.66  E-value=4.9e-08  Score=66.54  Aligned_cols=69  Identities=10%  Similarity=-0.013  Sum_probs=50.7

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeec--chhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQY--TTSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~--~~~~~~~~  141 (169)
                      ..+|+++..-                 ...+++|.+|.++|||+      + +||++||.|+++|+..+.  +..+....
T Consensus        13 ~~lG~~i~~~-----------------~~~~~~I~~V~~gspA~------~~agL~~GD~I~~Ing~~v~~~~~~~~~~~   69 (88)
T 1kwa_A           13 EPMGITLKMN-----------------ELNHCIVARIMHGGMIH------RQGTLHVGDEIREINGISVANQTVEQLQKM   69 (88)
T ss_dssp             SCCCEEEECS-----------------CGGGEEEEEECTTSHHH------HHTCCCTTCEEEEETTEEGGGSCHHHHHHH
T ss_pred             CceeEEEEeC-----------------CCCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4589998741                 12589999999999999      9 899999999999999876  44444433


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      ....++.+.+.+.|.
T Consensus        70 l~~~~~~v~l~v~r~   84 (88)
T 1kwa_A           70 LREMRGSITFKIVPS   84 (88)
T ss_dssp             HHHCCEEEEEEEECC
T ss_pred             HhcCCCcEEEEEECC
Confidence            333344667777664

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.66  E-value=2.1e-08  Score=68.46  Aligned_cols=57  Identities=16%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        27 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   85 (91)
T 2vsp_A           27 PGSFIKEVQKGGPAD------LAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK   85 (91)
T ss_dssp             SCCBC-CCCTTSHHH------HTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC-
T ss_pred             CCeEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            689999999999999      9999999999999999886  44444433333356678877774

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.65  E-value=5.1e-08  Score=66.63  Aligned_cols=58  Identities=10%  Similarity=0.066  Sum_probs=44.5

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        32 ~~gv~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   92 (94)
T 2fe5_A           32 DNSIYITKIIEGGAAQ------KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP   92 (94)
T ss_dssp             BCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcC
Confidence            3699999999999999      999 999999999999887663  343333333445667777663

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.65  E-value=1.7e-08  Score=69.33  Aligned_cols=57  Identities=12%  Similarity=-0.020  Sum_probs=45.7

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+.  .+........+..+.+.+.|.
T Consensus        30 ~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   88 (94)
T 1vb7_A           30 TPIIVTKVTERGKAE------AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS   88 (94)
T ss_dssp             EEEECCCBCTTSSHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECC
T ss_pred             CCeEEEEECCCCHHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEEC
Confidence            599999999999999      999999999999999988765  444433333346678888875

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.65  E-value=3.7e-08  Score=67.82  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=45.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        32 ~~~~V~~V~~~spA~------~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   91 (97)
T 2jil_A           32 RPVVITSVRPGGPAD------REGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYD   91 (97)
T ss_dssp             EEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            699999999999999      999 99999999999988876  4444433333556778888875

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.65  E-value=4.5e-08  Score=66.84  Aligned_cols=59  Identities=19%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..+...........+.+.+.|.--
T Consensus        24 ~~~~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   84 (91)
T 2f5y_A           24 SPVRVQAVDSGGPAE------RAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP   84 (91)
T ss_dssp             SSCEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            579999999999999      99999999999999988775  233333333334567888888643

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=4e-08  Score=68.42  Aligned_cols=57  Identities=19%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.++|+
T Consensus        30 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   88 (102)
T 2d90_A           30 KGQIIKDIEPGSPAE------AAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK   88 (102)
T ss_dssp             SSEEEECCCTTSTTT------TTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECST
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            699999999999999      999999999999998887663  233322223356678888764

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.64  E-value=7e-08  Score=69.03  Aligned_cols=71  Identities=14%  Similarity=0.032  Sum_probs=50.1

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee--cchhhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ--YTTSKLVV  140 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~--~~~~~~~~  140 (169)
                      .+.+|+++..-.               ....|++|.+|.++|||+      ++| |++||+|+++|+.++  .+..+...
T Consensus        35 ~~~lG~~l~~~~---------------~~~~~~~V~~V~~gspA~------~aG~L~~GD~I~~Ing~~v~~~~~~~~~~   93 (114)
T 2gzv_A           35 QNLIGISIGGGA---------------QYCPCLYIVQVFDNTPAA------LDGTVAAGDEITGVNGRSIKGKTKVEVAK   93 (114)
T ss_dssp             TSCCSEEEEECC---------------C--CCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCcEeEEEEeCC---------------CCCCCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            456999987532               112589999999999999      999 999999999999988  54444443


Q ss_pred             hhcCCCCeeEEEEEE
Q psy18070        141 WSINHPSITCHILLR  155 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r  155 (169)
                      .....+..+.+.+.+
T Consensus        94 ~l~~~~~~v~l~v~~  108 (114)
T 2gzv_A           94 MIQEVKGEVTIHYNK  108 (114)
T ss_dssp             HHHHCCSEEEEEEEC
T ss_pred             HHHcCCCeEEEEEEe
Confidence            333334445555543

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.64  E-value=4.1e-08  Score=68.57  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=41.9

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT  134 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~  134 (169)
                      ..+|+++..++++              ...|++|.+|.++|||+      ++||++||+|+++|+.++.+
T Consensus        20 ~~~Gf~v~~~~~~--------------~~~g~~V~~V~~~spA~------~aGL~~GD~Il~vng~~v~~   69 (94)
T 3kzd_A           20 DTYGFSLSSVEED--------------GIRRLYVNSVKETGLAS------KKGLKAGDEILEINNRAADA   69 (94)
T ss_dssp             -CCSEEEEEECSS--------------SSCEEEEEEECTTSHHH------HTTCCTTCEEEEETTEEGGG
T ss_pred             CCcCEEEEecCCC--------------CcCCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCC
Confidence            4689999876531              22699999999999999      99999999999999988765

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.64  E-value=9.1e-08  Score=64.25  Aligned_cols=56  Identities=13%  Similarity=-0.002  Sum_probs=41.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCC--CCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINH--PSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~--~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+.++.+  ..+........  ...+.+.+.|
T Consensus        25 ~~~~V~~v~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           25 EFLQIKSLVLDGPAA------LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             BCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            589999999999999      999 99999999999998863  23333222222  4455666654

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.64  E-value=5.4e-08  Score=67.63  Aligned_cols=59  Identities=14%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.-
T Consensus        33 ~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   94 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAA------MDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQ   94 (102)
T ss_dssp             CCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3699999999999999      999 99999999999988765  33333333334567788888864

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.64  E-value=1.3e-08  Score=74.58  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=51.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhc--CCCCeeEEEEEEeeEEeeccccc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSI--NHPSITCHILLRLYLLVCSELTK  166 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~--~~~~~~~~~i~r~~~~v~~~~~~  166 (169)
                      .+++|.+|.++|||+      ++| |++||+|+++|+..+.  +..++.....  .....+.+.+.|.|+.+..++.+
T Consensus        49 ~~v~V~~V~~gspA~------~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~~~~i~~~~~~  120 (126)
T 1wif_A           49 PYLQISHLINKGAAA------SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQD  120 (126)
T ss_dssp             TEEEECCCCTTSSGG------GCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSSCCCTTTCC
T ss_pred             CcEEEEEECCCCHHH------HcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEECCCccCceecc
Confidence            579999999999999      999 9999999999988874  3333333222  23557799999998877766554

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.63  E-value=8.8e-08  Score=66.03  Aligned_cols=57  Identities=11%  Similarity=-0.048  Sum_probs=43.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        30 ~~~~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   89 (97)
T 1n7e_A           30 DPIIISSLTKGGLAE------RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ   89 (97)
T ss_dssp             SCCEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            689999999999999      999 99999999999998854  2333322223455667887774

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.63  E-value=2.7e-08  Score=66.69  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        23 ~~~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   81 (83)
T 2kv8_A           23 APCVLSCVMRGSPAD------FVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEG   81 (83)
T ss_dssp             SSCBCCBCCTTSTTT------TTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECC
T ss_pred             CCeEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcC
Confidence            589999999999999      999999999999999887665  444433333345567777764

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.63  E-value=6.5e-08  Score=67.72  Aligned_cols=58  Identities=9%  Similarity=0.066  Sum_probs=46.0

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|..
T Consensus        33 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   93 (105)
T 2awx_A           33 NSIYVTKIIEGGAAH------KDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPT   93 (105)
T ss_dssp             CCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            699999999999999      999 99999999999988854  34433333344567788888854

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.62  E-value=7.9e-08  Score=65.99  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        33 ~g~~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   92 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAE------SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG   92 (96)
T ss_dssp             SCCEEEEECTTSHHH------HTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECC
T ss_pred             CCEEEEEeCCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcC
Confidence            699999999999999      999 99999999999988773  3444433333455667777764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.62  E-value=6.9e-08  Score=68.05  Aligned_cols=57  Identities=9%  Similarity=-0.074  Sum_probs=44.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        45 ~gv~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           45 ALQYLESVDEGGVAW------RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             SSEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            599999999999999      999999999999999887665  444433333345567776664

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.62  E-value=1.1e-07  Score=66.16  Aligned_cols=73  Identities=7%  Similarity=-0.000  Sum_probs=51.3

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceee--cchhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQ--YTTSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~--~~~~~~~~~  141 (169)
                      .+||+++..-..      +       ....|++|.+|.++|||+      + +||++||+|+++|+..+  .+..+....
T Consensus        21 ~~lG~~i~~~~~------~-------~~~~~~~V~~V~~~spA~------~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~   81 (101)
T 2yt7_A           21 EGLGVALVESGW------G-------SLLPTAVIANLLHGGPAE------RSGALSIGDRLTAINGTSLVGLPLAACQAA   81 (101)
T ss_dssp             CCCCEEEEECCC------S-------SSSCCEEEEEECTTSTTG------GGSSCCTTCEEEEESSCBCTTSCHHHHHHH
T ss_pred             CccCEEEEeCCC------C-------CCccCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            579999974210      0       112489999999999999      9 67999999999998887  444444433


Q ss_pred             hcC--CCCeeEEEEEEe
Q psy18070        142 SIN--HPSITCHILLRL  156 (169)
Q Consensus       142 ~~~--~~~~~~~~i~r~  156 (169)
                      ...  ....+.+.+.|.
T Consensus        82 l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           82 VRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             HHHTTTSSEEEEEECCC
T ss_pred             HHhCCCCCeEEEEEEeC
Confidence            222  455667777763

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.62  E-value=8.3e-08  Score=68.57  Aligned_cols=69  Identities=13%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             eecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhh
Q psy18070         66 YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWS  142 (169)
Q Consensus        66 ~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~  142 (169)
                      .+|+++.....                ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+.....
T Consensus        26 glG~~l~~~~~----------------~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   83 (119)
T 1tp5_A           26 GLGFNIVGGED----------------GEGIFISFILAGGPAD------LSGELRKGDQILSVNGVDLRNASHEQAAIAL   83 (119)
T ss_dssp             CCCEEEEECGG----------------GCCEEEEEECTTSHHH------HHSCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CccEEEecCCC----------------CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            38888875431                1699999999999999      999 999999999999887654  3333333


Q ss_pred             cCCCCeeEEEEEEe
Q psy18070        143 INHPSITCHILLRL  156 (169)
Q Consensus       143 ~~~~~~~~~~i~r~  156 (169)
                      ......+.+.+.|+
T Consensus        84 ~~~~~~v~l~v~r~   97 (119)
T 1tp5_A           84 KNAGQTVTIIAQYK   97 (119)
T ss_dssp             HTSCSEEEEEEEEC
T ss_pred             HcCCCeEEEEEEEC
Confidence            34455668888774

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=8.5e-08  Score=68.81  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        53 ~~gv~V~~V~~gspA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~  113 (117)
T 2byg_A           53 DNSIYVTKIIDGGAAQ------KDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP  113 (117)
T ss_dssp             BCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3699999999999999      999 9999999999998877  44444433334456678888775

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.61  E-value=9.3e-08  Score=68.95  Aligned_cols=58  Identities=16%  Similarity=0.026  Sum_probs=47.0

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        52 ~~gv~V~~V~~gspA~------~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~  112 (118)
T 3b76_A           52 DLPIYVISVEPGGVIS------RDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV  112 (118)
T ss_dssp             CCCEEEEEECTTSHHH------HHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            3699999999999999      999 9999999999999877  55555544445566678887774

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.61  E-value=7.5e-08  Score=67.81  Aligned_cols=57  Identities=11%  Similarity=0.075  Sum_probs=45.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+........+..+.+.+.|.
T Consensus        32 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   91 (106)
T 4amh_A           32 NSIYVTKIIEGGAAH------KDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKP   91 (106)
T ss_dssp             CCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence            599999999999999      999 99999999999988754  3444444444566778888884

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.61  E-value=8.1e-08  Score=66.18  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+........+..+.+.+.|.
T Consensus        30 ~gv~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   89 (98)
T 2opg_A           30 GAIIIHEVYEEGAAC------KDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRD   89 (98)
T ss_dssp             CSEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------hCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcC
Confidence            599999999999999      999 999999999999887653  333333333446668888774

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.1e-08  Score=67.45  Aligned_cols=57  Identities=12%  Similarity=-0.179  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++||++||+|+++|+.++.+.  .+...........+.+.+.|.
T Consensus        32 ~~v~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (94)
T 2eeg_A           32 APLTISRVHAGSKAA------LAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSG   90 (94)
T ss_dssp             SCCEECCCCSSSHHH------HTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            689999999999999      999999999999999887763  333333333445567777764

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=6.8e-08  Score=67.63  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        38 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   97 (105)
T 1wha_A           38 AGIFVSRIAEGGAAH------RAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE   97 (105)
T ss_dssp             CSCEEEECCTTSSHH------HHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEEC
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            699999999999999      999 99999999999888765  3444433333456678888875

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.60  E-value=1.7e-07  Score=65.35  Aligned_cols=57  Identities=11%  Similarity=-0.048  Sum_probs=44.8

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh--cCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS--INHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      + ||++||+|+++++.++.+..++....  ......+.+.+.|.
T Consensus         6 ~~Gv~V~~V~~~spA~------~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~   64 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAA------D-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHG   64 (100)
T ss_dssp             CCCEEEEEECTTSGGG------G-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CCCEEEEEeCCCCchH------H-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            3799999999999999      7 99999999999888877655444333  23455678888885

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.60  E-value=1.5e-08  Score=69.15  Aligned_cols=57  Identities=9%  Similarity=-0.022  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee--cchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ--YTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+  .+..+........++.+.+.+.+.
T Consensus        21 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~   80 (88)
T 3e17_A           21 SQIFVKEMTRTGLAT------KDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD   80 (88)
T ss_dssp             EEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCC
Confidence            589999999999999      999 999999999999887  444444444344555666666553

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.60  E-value=4.7e-08  Score=69.50  Aligned_cols=57  Identities=19%  Similarity=0.101  Sum_probs=44.7

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        38 ~g~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   96 (114)
T 2edz_A           38 DGHLIRVIEEGSPAE------KAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG   96 (114)
T ss_dssp             CSCEEECCCTTCTTG------GGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECH
T ss_pred             CCeEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            699999999999999      999999999999998887663  333322223356778888874

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.60  E-value=6e-08  Score=68.59  Aligned_cols=57  Identities=7%  Similarity=-0.200  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+.........+.+.+.+.|.
T Consensus        25 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   84 (106)
T 2la8_A           25 IGCTIADLIQGQYPE------IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP   84 (106)
T ss_dssp             SSEEEEECCTTSCHH------HHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence            699999999999999      999 99999999999888765  3333333334445678888874

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=8.6e-08  Score=69.50  Aligned_cols=57  Identities=16%  Similarity=0.014  Sum_probs=46.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh-hhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~-~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.. +.++..++....+.+.+.|.
T Consensus        46 ~gv~V~~V~~~spA~------~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~v~l~v~R~  103 (128)
T 1uf1_A           46 LGIYITGVDPGSEAE------GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDV  103 (128)
T ss_dssp             CCCEEEEECTTCHHH------HHTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCeEEEEEEEC
Confidence            599999999999999      9999999999999998877642 33444455556778888885

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.60  E-value=3.6e-08  Score=68.99  Aligned_cols=57  Identities=19%  Similarity=0.095  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+..  +...........+.+.+.|.
T Consensus        26 ~g~~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   84 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAE------KAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG   84 (106)
T ss_dssp             CSCEEECCCTTSHHH------HTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECH
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            689999999999999      9999999999999998876653  33333334456778888774

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=8.1e-08  Score=67.69  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=45.7

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+...........+.+.+.|.
T Consensus        35 ~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   95 (110)
T 1um1_A           35 APGLYIQTLLPGSPAA------ADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS   95 (110)
T ss_dssp             CSSEEEEEECTTSHHH------HHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3699999999999999      999 99999999999887753  4444444444456678888875

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.60  E-value=8.1e-08  Score=65.72  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=45.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee--cchhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ--YTTSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .+++|.+|.++|||+      ++| |++||+|+++|+..+  .+..+........++.+.+.++|.+
T Consensus        28 ~~~~V~~v~~gspA~------~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (93)
T 3o46_A           28 GAIIVARIMRGGAAD------RSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGS   88 (93)
T ss_dssp             CCEEEEEECTTSHHH------HHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            689999999999999      999 999999999999988  5545544444344556677777654

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=4.2e-08  Score=70.51  Aligned_cols=57  Identities=12%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+........+..+.+.+.|.
T Consensus        53 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  112 (117)
T 2fne_A           53 LPIYVKTVFAKGAAS------EDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS  112 (117)
T ss_dssp             EEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            589999999999999      999 9999999999998887  44444433333445578888775

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.59  E-value=8.1e-08  Score=67.26  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|+
T Consensus        37 ~~gv~V~~V~~~spA~------~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   97 (106)
T 3axa_A           37 KLGIYVKSVVKGGAAD------VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ   97 (106)
T ss_dssp             SEEEEEEEEBTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3699999999999999      999 99999999999988764  3444333334556678888875

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=7.6e-08  Score=65.62  Aligned_cols=57  Identities=16%  Similarity=0.007  Sum_probs=42.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|+
T Consensus        30 ~~~~V~~V~~~spA~------~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   89 (93)
T 2dkr_A           30 SPIYISRVIPGGVAD------RHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG   89 (93)
T ss_dssp             CCCEEEEECTTSHHH------HHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeC
Confidence            699999999999999      996 999999999999887742  333322222344567777663

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.59  E-value=1.1e-07  Score=65.85  Aligned_cols=58  Identities=14%  Similarity=0.009  Sum_probs=44.6

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        36 ~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   96 (101)
T 2jik_A           36 DSGIYVSRIKENGAAA------LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR   96 (101)
T ss_dssp             BCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            3699999999999999      999 999999999999887653  333333333455667777774

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.58  E-value=1.2e-07  Score=67.51  Aligned_cols=57  Identities=12%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccccCC-CCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGI-KPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL-~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++|| ++||+|+++|+..+..  ..+...........+.+.+.|.
T Consensus        48 ~gv~V~~V~~~spA~------~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~  107 (113)
T 1va8_A           48 DSVIISRIVKGGAAE------KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS  107 (113)
T ss_dssp             SSEEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            699999999999999      9999 9999999999998873  3333333323445667777664

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.57  E-value=1.2e-07  Score=64.46  Aligned_cols=56  Identities=9%  Similarity=-0.100  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++ ||++||+|+++|+..+.+.  .+...........+.+.+.|
T Consensus        30 ~g~~V~~V~~~spA~------~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r   88 (90)
T 1qav_A           30 MPILISKIFKGLAAD------QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            589999999999999      99 9999999999999988653  33333333344566777766

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.57  E-value=1.9e-07  Score=67.28  Aligned_cols=58  Identities=14%  Similarity=0.083  Sum_probs=45.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcC--CCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSIN--HPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~--~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+.......  ....+.+.+.|..
T Consensus        44 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  106 (123)
T 1ueq_A           44 EFLQVKSVIPDGPAA------QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             CCCEEEEECTTSHHH------HTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            689999999999999      999 99999999999988763  3333333223  3567788888865

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.56  E-value=9.6e-08  Score=67.41  Aligned_cols=57  Identities=12%  Similarity=0.036  Sum_probs=43.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        38 ~g~~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   97 (111)
T 2dlu_A           38 SGVVVRTIVPGGLAD------RDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD   97 (111)
T ss_dssp             SSBEEEEECTTSSHH------HHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEES
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            699999999999999      999 99999999999888763  2333322222345668888775

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=7e-08  Score=67.81  Aligned_cols=58  Identities=19%  Similarity=0.098  Sum_probs=45.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|.-
T Consensus        42 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~  102 (108)
T 1q7x_A           42 GGIYVKAVIPQGAAE------SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ  102 (108)
T ss_dssp             CCCBEEEECTTSTHH------HHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            699999999999999      999 9999999999998876  334444333334567788888753

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.56  E-value=1.4e-07  Score=67.31  Aligned_cols=58  Identities=12%  Similarity=-0.059  Sum_probs=43.6

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCC-eeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPS-ITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~-~~~~~i~r~~  157 (169)
                      .+++|.+|.++|||+      +|||++||+|+++|+.++.  +..+........++ .+.+.+.|..
T Consensus        44 ~~v~V~~V~~gspA~------~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           44 APVQVHFLDPYCSAS------VAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SSCEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            579999999999999      9999999999999998877  33444433333333 3677777643

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=1.2e-07  Score=66.63  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=45.2

Q ss_pred             CCcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++ ||++||+|+++|+..+...  .+...........+.+.++|+-
T Consensus        40 ~~gv~V~~V~~~spA~------~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~  101 (107)
T 1uhp_A           40 SEGIFVSKIVDSGPAA------KEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             SCCCEEEEECSSSHHH------HTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCEEEEEeCCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCC
Confidence            4699999999999999      99 9999999999999888543  3333333334566788888753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.55  E-value=7.1e-08  Score=67.69  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=52.6

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~  141 (169)
                      ..+|+++.......          ......|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+....
T Consensus        25 ~~lG~~~~~~~~~~----------~~~~~~gv~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   88 (108)
T 2jre_A           25 SSLGISISGMRDQS----------TTGEATGIYVKSLIPGSAAA------LDGRIEPNDKILRVDDVNVQGMAQSDVVEV   88 (108)
T ss_dssp             SCCSEEEECCCCCS----------CSSCCCCCEEEEECTTSHHH------HHSSCCSSEEEEEETTEECTTSCHHHHHHH
T ss_pred             CCcCEEEEcccCCC----------CCCCCCCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45888887432110          00133699999999999999      999 99999999999998866  2333322


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .......+.+.+.|.
T Consensus        89 l~~~g~~v~l~v~R~  103 (108)
T 2jre_A           89 LRNAGNPVRLLLIRR  103 (108)
T ss_dssp             HHHHCSEEEEEEEEC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            222345667887775

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.55  E-value=8.7e-08  Score=67.29  Aligned_cols=59  Identities=12%  Similarity=0.032  Sum_probs=46.2

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.-
T Consensus        39 ~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~  100 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQ------RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK  100 (107)
T ss_dssp             EEEEEEEEECTTCHHH------HHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            3699999999999999      999 99999999999988764  34433333334567788888753

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.55  E-value=3.5e-08  Score=68.10  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=43.9

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC--CCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN--HPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~r~  156 (169)
                      |++|.+|.++|||+      + ||++||+|+++|+.++.+..++......  ....+.+.+.|.
T Consensus         2 Gv~V~~V~~~spA~------~-GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~   58 (91)
T 2kjp_A            2 GIYASSVVENMPAK------G-KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIERE   58 (91)
T ss_dssp             CSSCCCCCCSSCCS------S-CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESS
T ss_pred             ceEEEEECCCChHH------H-cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            88999999999999      8 9999999999998887766555544333  245678888885

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.54  E-value=5.1e-08  Score=76.53  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=54.0

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCC-CcEEEecCce-eecchhhhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKP-TSSRLLGECL-AQYTTSKLVVW  141 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~-GDvI~~~~~v-~~~~~~~~~~~  141 (169)
                      ..++|+++..++++.++.            .|++|.+|.++|||+      +|||++ ||+|+++++. ....++...+.
T Consensus        94 ~~~lGi~~~~~~~~~~~~------------~Gv~V~~V~~~spA~------~aGl~~~GD~I~~ing~v~~~~~l~~~l~  155 (209)
T 3rle_A           94 QGLLGVSIRFCSFDGANE------------NVWHVLEVESNSPAA------LAGLRPHSDYIIGADTVMNESEDLFSLIE  155 (209)
T ss_dssp             SSSSCEEEEEEECTTGGG------------SCEEEEEECTTSHHH------HHTCCTTTEEEEEESSCCCSSSCHHHHHH
T ss_pred             cCccceEEeecChhHccc------------cceEEEEeCCCChHH------HCCCCCCCCEEEECCCEeCCHHHHHHHHH
Confidence            357899998877654321            699999999999999      999999 9999997765 23333433343


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      .. ....+.+.++|+
T Consensus       156 ~~-~g~~v~l~v~r~  169 (209)
T 3rle_A          156 TH-EAKPLKLYVYNT  169 (209)
T ss_dssp             HT-TTSCEEEEEEET
T ss_pred             hC-CCCeEEEEEEEC
Confidence            33 455678888884

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.54  E-value=1.6e-07  Score=66.51  Aligned_cols=71  Identities=10%  Similarity=0.016  Sum_probs=50.5

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhh-hhhhc
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKL-VVWSI  143 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~-~~~~~  143 (169)
                      .-+|+++....               +...|++|..|.++|||+      ++||++||+|+++|+..+.+.... ....+
T Consensus        27 ~~lG~~l~~~~---------------~~~~gv~V~~V~~~s~A~------~aGL~~GD~Il~vng~~v~~~~~~~~~~~~   85 (114)
T 1x5n_A           27 RGLGCSISSGP---------------IQKPGIFISHVKPGSLSA------EVGLEIGDQIVEVNGVDFSNLDHKEAVNVL   85 (114)
T ss_dssp             CCCCEEEEECC---------------SSSCSEEEEEECTTSTTT------TTTCCTTCEEEEETTEETTSCCTTHHHHHH
T ss_pred             CceeEEEeecC---------------CCCCCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34789887653               123699999999999999      999999999999998877554321 22222


Q ss_pred             CCCCeeEEEEEEe
Q psy18070        144 NHPSITCHILLRL  156 (169)
Q Consensus       144 ~~~~~~~~~i~r~  156 (169)
                      .....+.+.++|.
T Consensus        86 ~~~~~v~l~v~r~   98 (114)
T 1x5n_A           86 KSSRSLTISIVAA   98 (114)
T ss_dssp             HHCSSEEEEECSS
T ss_pred             hcCCeEEEEEEcC
Confidence            2234567777765

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.53  E-value=4.9e-08  Score=69.59  Aligned_cols=57  Identities=18%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec---chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY---TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~---~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.   +..+...........+.+.+.|.
T Consensus        49 ~gv~V~~V~~~spA~------~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~  109 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAH------RDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG  109 (117)
T ss_dssp             EEEEECCCCTTSHHH------HHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESS
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            699999999999999      999 9999999999999886   44444433333556778888875

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.53  E-value=2.3e-08  Score=70.71  Aligned_cols=61  Identities=11%  Similarity=0.004  Sum_probs=47.8

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEeeEE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLYLL  159 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~~~  159 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.+-.
T Consensus        43 ~~gv~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  106 (111)
T 1uju_A           43 DEGIFISKVSPTGAAG------RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFES  106 (111)
T ss_dssp             CCCCEEEEECTTSHHH------HHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCCC
T ss_pred             CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            4699999999999999      999 99999999999988773  4444444334455668888887754

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.53  E-value=9.3e-08  Score=66.62  Aligned_cols=57  Identities=16%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      + ||++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        42 ~~gv~V~~V~~~spA~------~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~  100 (103)
T 1n7t_A           42 DDGIFVTRVQPEGPAS------K-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             CCSEECCCBSSSSTTS------S-SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCCchH------H-CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEec
Confidence            4699999999999999      9 999999999999988765  3343333334456678888775

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.53  E-value=1.7e-07  Score=66.54  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=44.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++++..+.+.  .+...........+.+.+.|.
T Consensus        49 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~  108 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAE------RSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG  108 (112)
T ss_dssp             CCEEEEEECTTSHHH------HTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            699999999999999      999 999999999999887553  333333333455668888775

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.53  E-value=1.9e-07  Score=66.49  Aligned_cols=57  Identities=23%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        50 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~  109 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAG------KTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSL  109 (117)
T ss_dssp             CSEEEEEECSSSTTT------SSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCB
T ss_pred             CCEEEEEeCCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            699999999999999      999 99999999999888754  3333333333455667777664

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.52  E-value=5.2e-08  Score=68.10  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++||++||+|+++|+.++.+  ..++..........+.+.+.|.
T Consensus        29 ~~~~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   87 (103)
T 1v5l_A           29 QPLVITRITPGSKAA------AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA   87 (103)
T ss_dssp             EEEECSCBCTTSTTG------GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCC
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            489999999999999      99999999999999998877  4444443333356678888774

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.52  E-value=1.2e-07  Score=65.41  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=44.9

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh--hcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW--SINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      + ||++||+|+++|+.++.+..++...  .......+.+.+.|.
T Consensus         4 ~~Gv~V~~V~~~spA~------~-GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~   62 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAA------G-RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRD   62 (94)
T ss_dssp             CCCEECCCCCTTSTTB------T-TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEET
T ss_pred             CCcEEEEEECCCChHH------h-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            3799999999999999      8 9999999999988877665444433  223456778999885

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.52  E-value=1.1e-07  Score=66.31  Aligned_cols=58  Identities=12%  Similarity=0.059  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCC--CCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINH--PSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~--~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+........  ...+.+.+.|.-
T Consensus        34 ~~~~V~~V~~~spA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           34 QPILIGAVIAMGSAD------RDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             SCCBEEEECTTSTTG------GGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEEeCCCChHH------hCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence            689999999999999      999 99999999999998854  33333222222  467788888864

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.52  E-value=5.7e-08  Score=76.06  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeee
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ++|||++++||||||||+|.+|++|||++..
T Consensus       131 ~i~t~~~~~~GDSGGPl~~~~g~~vGI~s~~  161 (198)
T 2h5c_A          131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGG  161 (198)
T ss_dssp             EEEECSCCBTTCTTCEEECTTCBEEEEEEEE
T ss_pred             eEEecccCCCCcceeEEEeeCCEEEEEEEee
Confidence            4899999999999999999999999999986

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=7.8e-08  Score=66.89  Aligned_cols=57  Identities=11%  Similarity=0.007  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecchhhhhhhhc-CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTTSKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++ ||++||+|+++|+.++.+..+.....+ .....+.+.+.|.
T Consensus        35 ~~v~V~~V~~~spA~------~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l~v~R~   93 (100)
T 2edp_A           35 EPLTVSKIEDGGKAA------LSQKMRTGDELVNINGTPLYGSRQEALILIKGSFRILKLIVRRR   93 (100)
T ss_dssp             EEEEECCCCTTSHHH------HHTSCCTTCEEEEETTEECCSCSHHHHHHHHTCCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCCEEEEECCEEccchHHHHHHHHHhCCCeEEEEEEeC
Confidence            479999999999999      99 999999999999998877423233222 3345668888875

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.7e-07  Score=67.12  Aligned_cols=60  Identities=13%  Similarity=-0.013  Sum_probs=46.0

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEeeE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+..  +...........+.+.+.|...
T Consensus        46 ~~gv~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           46 DSGIYVSRIKENGAAA------LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             CCSEEEEEECSSSHHH------HSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4699999999999999      999 9999999999998876642  3333322235567888888654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.51  E-value=8.6e-08  Score=67.86  Aligned_cols=60  Identities=13%  Similarity=-0.016  Sum_probs=46.8

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEeeE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.--
T Consensus        34 ~~g~~V~~V~~~s~A~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   96 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAH------RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERP   96 (113)
T ss_dssp             CEEEEEEECCTTSHHH------HHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence            3699999999999999      999 99999999999988764  344333333345677888888643

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.51  E-value=2.2e-07  Score=68.16  Aligned_cols=58  Identities=9%  Similarity=-0.086  Sum_probs=44.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+..  ..+...........+.+.+.|.-
T Consensus        65 ~gv~V~~V~~gspA~------~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D           65 ALQYLESVDEGGVAW------RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             CSEEEEEECTTSGGG------GGTCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            589999999999999      99999999999999887764  33333333334556677777654

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=5e-08  Score=70.12  Aligned_cols=70  Identities=13%  Similarity=0.063  Sum_probs=50.3

Q ss_pred             eecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhcC
Q psy18070         66 YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSIN  144 (169)
Q Consensus        66 ~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~~  144 (169)
                      .+|+++..+++.     +         ..|++|..|.++|||+      ++||++||+|+++|+.++.+. .+.....+.
T Consensus        30 ~~G~~v~~~~~~-----~---------~~gv~V~~V~~~spA~------~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~   89 (114)
T 2d8i_A           30 TYGFSLSSVEED-----G---------IRRLYVNSVKETGLAS------KKGLKAGDEILEINNRAADALNSSMLKDFLS   89 (114)
T ss_dssp             CCCCEEEEEEET-----T---------EEEEEEEECCTTSSHH------HHTCCTTCCEEEESSCBGGGCCHHHHHHHHT
T ss_pred             ccCEEEEecCcC-----C---------cCCEEEEEeCCCCHHH------HcCCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            369988765432     1         1589999999999999      999999999999998887663 222333333


Q ss_pred             CCCeeEEEEEEe
Q psy18070        145 HPSITCHILLRL  156 (169)
Q Consensus       145 ~~~~~~~~i~r~  156 (169)
                      . ..+.+.+.|.
T Consensus        90 ~-~~v~l~v~R~  100 (114)
T 2d8i_A           90 Q-PSLGLLVRTY  100 (114)
T ss_dssp             S-SEEEEEEEEC
T ss_pred             C-CcEEEEEEEC
Confidence            3 3667777764

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.50  E-value=2.5e-07  Score=63.22  Aligned_cols=76  Identities=13%  Similarity=0.029  Sum_probs=52.9

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVV  140 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~  140 (169)
                      ...+|+++........           ....|++|.+|.++|||+      ++| |++||+|+++++..+.+.  .+...
T Consensus        14 ~~~lG~~i~~~~~~~~-----------~~~~~~~V~~v~~~s~A~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~   76 (97)
T 2iwn_A           14 VQGLGITIAGYIGDKK-----------LEPSGIFVKSITKSSAVE------HDGRIQIGDQIIAVDGTNLQGFTNQQAVE   76 (97)
T ss_dssp             TTBSCEEEECCCCC---------------CCCCEEEEECTTCHHH------HHCCCCTTCEEEEETTEECTTSCHHHHHH
T ss_pred             CCCCcEEEEccCCCCC-----------CCCCCEEEEEeCCCChHH------hCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3568999875421100           123699999999999999      999 999999999999887653  33332


Q ss_pred             hhcCCCCeeEEEEEEe
Q psy18070        141 WSINHPSITCHILLRL  156 (169)
Q Consensus       141 ~~~~~~~~~~~~i~r~  156 (169)
                      ........+.+.+.|.
T Consensus        77 ~~~~~~~~v~l~v~r~   92 (97)
T 2iwn_A           77 VLRHTGQTVLLTLMRR   92 (97)
T ss_dssp             HHHTCCSEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEEeC
Confidence            2233455667887774

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.49  E-value=2e-07  Score=62.81  Aligned_cols=55  Identities=15%  Similarity=0.065  Sum_probs=40.2

Q ss_pred             CcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILL  154 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~  154 (169)
                      .|++|.+|.++|||+      + +||++||+|+++|+..+.+.  .+........+..+.+.+.
T Consensus        28 ~~~~V~~V~~gspA~------~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   85 (87)
T 4e34_A           28 VPILISEIHPGQPAD------RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV   85 (87)
T ss_dssp             EEEEEEEECTTSHHH------HHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            579999999999999      9 79999999999999887433  3333333333444455543

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.49  E-value=5.4e-08  Score=67.93  Aligned_cols=58  Identities=10%  Similarity=-0.121  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .+++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.-
T Consensus        29 ~~v~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g   88 (103)
T 1wf7_A           29 MPLTISSLKDGGKAS------QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS   88 (103)
T ss_dssp             EEEEECCCCTTCHHH------HTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCS
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            579999999999999      999999999999999887664  4433333334556788888754

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.49  E-value=3.2e-07  Score=64.63  Aligned_cols=74  Identities=8%  Similarity=0.100  Sum_probs=52.5

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~  141 (169)
                      ..+|+++......            .....|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+....
T Consensus        22 ~glG~~~~~~~~~------------~~~~~g~~V~~V~~~spA~------~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (111)
T 2koj_A           22 EGLGFSITSRDVT------------IGGSAPIYVKNILPRGAAI------QDGRLKAGDRLIEVNGVDLAGKSQEEVVSL   83 (111)
T ss_dssp             TBTCEEEEECSCS------------SSSSSCEEEEEECSSSHHH------HHCSSCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             CccCEEEEeccCC------------CCCCcCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4588888754211            0223699999999999999      999 999999999999988542  333322


Q ss_pred             hc--CCCCeeEEEEEEe
Q psy18070        142 SI--NHPSITCHILLRL  156 (169)
Q Consensus       142 ~~--~~~~~~~~~i~r~  156 (169)
                      ..  .....+.+.+.|.
T Consensus        84 l~~~~~g~~v~l~v~R~  100 (111)
T 2koj_A           84 LRSTKMEGTVSLLVFRQ  100 (111)
T ss_dssp             HHHCCCSSEEEEEEEEC
T ss_pred             HHhCCCCCeEEEEEEeC
Confidence            22  2355678888775

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.49  E-value=5.7e-07  Score=62.86  Aligned_cols=57  Identities=11%  Similarity=0.015  Sum_probs=44.1

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+       +||++||+|+++|+.++.+.  .+...........+.+.+.|.
T Consensus        38 ~~gv~V~~V~~~spA~-------agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   96 (107)
T 2h2b_A           38 ETSIVISDVLKGGPAE-------GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK   96 (107)
T ss_dssp             CCCEEEEEECTTSTTB-------TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCchh-------hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEEC
Confidence            4699999999999998       79999999999999887664  333333334456678888775

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.48  E-value=3e-08  Score=69.35  Aligned_cols=73  Identities=14%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             eecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhc
Q psy18070         66 YIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSI  143 (169)
Q Consensus        66 ~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~  143 (169)
                      -+|+++...+.+....        .....|++|..|.++|||+      ++||++||+|+++|+..+.  +..+......
T Consensus        28 ~~G~~l~~~~~~~~~~--------~~~~~~~~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           28 TFGFEIQSYRPQNQNA--------CSSEMFTLICKIQEDSPAH------CAGLQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCSEEEEECCCCCCSS--------SCCSCCEEEEEECTTSHHH------HHTCCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             CccEEEEeeecccCCc--------ccCCCCeEEEEECCCChHH------HcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            4699988754321110        1234699999999999999      9999999999999998876  4444443332


Q ss_pred             CCCCeeEEE
Q psy18070        144 NHPSITCHI  152 (169)
Q Consensus       144 ~~~~~~~~~  152 (169)
                      ..+..+.+.
T Consensus        94 ~~~~~v~l~  102 (104)
T 2z17_A           94 SSGNLLTIE  102 (104)
T ss_dssp             HTTTEEEEE
T ss_pred             hCCCcEEEE
Confidence            334444443

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.48  E-value=1.4e-07  Score=68.08  Aligned_cols=57  Identities=14%  Similarity=0.129  Sum_probs=45.0

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+........+..+.+.+.|.
T Consensus        51 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~  110 (124)
T 2daz_A           51 MSIFVVGINPEGPAA------ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRN  110 (124)
T ss_dssp             CCEEEEEECTTSHHH------HHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            599999999999999      999 99999999999888754  4444333334455778888875

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.48  E-value=4.4e-07  Score=65.42  Aligned_cols=56  Identities=11%  Similarity=-0.047  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+........+..+.+.+.|
T Consensus        45 ~~~~V~~v~~gspA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r  103 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAA------LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK  103 (125)
T ss_dssp             SSEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCEEEEEeCCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            689999999999999      999 99999999999998763  333333333344556777776

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.48  E-value=6.9e-08  Score=67.16  Aligned_cols=57  Identities=19%  Similarity=0.082  Sum_probs=43.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+  ..+...........+.+.+.|.
T Consensus        36 ~~~~V~~V~~~spA~------~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   94 (100)
T 1whd_A           36 SPVRVQAVDSGGPAE------RAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV   94 (100)
T ss_dssp             SSCBCCBCCTTSHHH------HHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            689999999999999      99999999999999988774  2333322222344577777774

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.47  E-value=3e-07  Score=66.19  Aligned_cols=57  Identities=9%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+.++.+.  .+......  +....+.+.+.|.
T Consensus        58 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A           58 APIYVKNILPRGAAI------QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             CCEEEEEECTTSHHH------HHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeC
Confidence            689999999999999      999 999999999999888662  33322222  2245667777764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.47  E-value=1.4e-07  Score=66.58  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcC---CCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSIN---HPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~---~~~~~~~~i~r~~~  158 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+.......   ++..+.+.+.|..-
T Consensus        33 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           33 GGIYIGSIMKGGAVA------ADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            699999999999999      999 99999999999988766  3333322211   24567888888643

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=65.99  Aligned_cols=57  Identities=11%  Similarity=0.012  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        38 ~~v~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   97 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQ------RCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP   97 (104)
T ss_dssp             CCCEEEEECTTCHHH------HHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            689999999999999      999 999999999999887663  333322222355667887775

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.46  E-value=1.2e-07  Score=67.32  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=45.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|.-
T Consensus        43 ~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  103 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAA------RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDE  103 (116)
T ss_dssp             SSEECCCCCSSSHHH------HHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCS
T ss_pred             CCEEEEEECCCChHH------hCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            599999999999999      999 99999999999998866  33433333334466788887753

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.46  E-value=3.5e-08  Score=69.17  Aligned_cols=56  Identities=13%  Similarity=0.036  Sum_probs=42.0

Q ss_pred             CcEEEEEEccCCcccccccccccC--CCCCcEEEecCceeecch--hhhhhhhcCCC----CeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG--IKPTSSRLLGECLAQYTT--SKLVVWSINHP----SITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG--L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~----~~~~~~i~r  155 (169)
                      .|++|..|.++|||+      ++|  |++||+|+++|+..+.+.  .+.........    ..+.+.+.|
T Consensus        43 ~~~~V~~V~~~spA~------~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           43 MPVIVSRVAPGTPAD------LCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             EEEEEEEECTTSHHH------HSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             CCeEEEEECCCCchH------HcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            589999999999999      999  999999999999887643  33332222222    266777766

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.46  E-value=2.3e-07  Score=66.33  Aligned_cols=57  Identities=9%  Similarity=-0.023  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        49 ~g~~V~~v~~~s~A~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  108 (117)
T 1ujd_A           49 IGAYIAKILPGGSAE------QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             EEEEEEEECTTCHHH------HHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             cCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEEC
Confidence            589999999999999      999 999999999999988653  333333334455678888775

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.84  E-value=2e-08  Score=71.77  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=31.9

Q ss_pred             CcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeecc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQYT  134 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~~  134 (169)
                      .|++|.+|.++|||+      + +||++||+|+++|+.++.+
T Consensus        53 ~gv~V~~V~~~spA~------~~aGL~~GD~Il~ING~~v~~   88 (112)
T 2lob_A           53 VPILISEIHPGQPAD------RCGGLHVGDAILAVNGVNLRD   88 (112)
Confidence            589999999999999      9 9999999999999887743

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.46  E-value=1.5e-07  Score=67.88  Aligned_cols=59  Identities=14%  Similarity=-0.058  Sum_probs=46.0

Q ss_pred             CCcEEEEEEcc--CCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMY--NSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~--~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      ..|++|..|.+  +|||+      ++||++||+|+++|+..+.+.  .++..........+.+.+.|.-
T Consensus        43 ~~gv~V~~V~~~~~spA~------~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g  105 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNN------RNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDP  105 (118)
T ss_dssp             CCEEEEEECCTTTSCTTH------HHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECS
T ss_pred             CCcEEEEEecCCCCChHH------HcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECC
Confidence            37999999999  99999      999999999999998877665  4544333333556688887753

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.45  E-value=2.2e-07  Score=64.97  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++ ||++||+|+++|+..+.+  ..+........+..+.+.+.|.+
T Consensus        35 ~~~~V~~V~~~s~A~------~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~   95 (103)
T 2dc2_A           35 VPILISEIHPGQPAD------RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVA   95 (103)
T ss_dssp             EEEEEEEECTTSHHH------HHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecC
Confidence            589999999999999      94 999999999999998854  34433333344567788888765

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.45  E-value=1.4e-07  Score=68.40  Aligned_cols=58  Identities=12%  Similarity=-0.027  Sum_probs=45.6

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec---chhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY---TTSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~---~~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.   +..+...........+.+.+.|.-
T Consensus        54 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~  115 (128)
T 2db5_A           54 VDIFVKDVQPGSVAD------RDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREP  115 (128)
T ss_dssp             EEEEEECCCTTSHHH------HTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            599999999999999      999 9999999999988875   444443333334567788888863

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.45  E-value=2.1e-07  Score=67.46  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~  141 (169)
                      ..+|+++........  +        ....|++|..|.++|||+      ++| |++||+|+++|+..+.+  ..+....
T Consensus        27 ~~lG~~i~~~~~~~~--~--------~~~~gv~V~~V~~~spA~------~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   90 (129)
T 2dmz_A           27 QSLGIRIVGYVGTSH--T--------GEASGIYVKSVIPGSAAY------HNGHIQVNDKIVAVDGVNIQGFANHDVVEV   90 (129)
T ss_dssp             CCCCEEEEEECCCSS--S--------CCCCEEEEEEECTTSHHH------HHTCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred             CCcCEEEEeecCCcc--c--------CCCCCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            458888876432110  0        234799999999999999      999 99999999999888766  4443333


Q ss_pred             hcCCCCeeEEEEEEee
Q psy18070        142 SINHPSITCHILLRLY  157 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~~  157 (169)
                      .......+.+.+.|.-
T Consensus        91 l~~~~~~v~l~v~R~~  106 (129)
T 2dmz_A           91 LRNAGQVVHLTLVRRK  106 (129)
T ss_dssp             HHHCCSSEEEEEEEES
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            2235567788888853

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.45  E-value=5.3e-07  Score=63.56  Aligned_cols=70  Identities=11%  Similarity=-0.003  Sum_probs=52.2

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCC-CCCcEEEecCceeecc--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGI-KPTSSRLLGECLAQYT--TSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL-~~GDvI~~~~~v~~~~--~~~~~~~  141 (169)
                      ..+|+++..-.                ...|++|.+|.++|||+      ++|| ++||+|+++|+..+.+  ..+....
T Consensus        13 ~glG~~~~~~~----------------~~~~~~V~~v~~~spA~------~aGll~~GD~I~~ing~~v~~~~~~~~~~~   70 (112)
T 1qau_A           13 GGLGFLVKERV----------------SKPPVIISDLIRGGAAE------QSGLIQAGDIILAVNDRPLVDLSYDSALEV   70 (112)
T ss_dssp             TBTSEEEEECS----------------SSSCEEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             CceeEEEEecC----------------CCCCEEEEEeCCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45898887532                12589999999999999      9998 9999999999988776  4443332


Q ss_pred             hc-CCCCeeEEEEEEe
Q psy18070        142 SI-NHPSITCHILLRL  156 (169)
Q Consensus       142 ~~-~~~~~~~~~i~r~  156 (169)
                      .. .....+.+.+.|.
T Consensus        71 l~~~~g~~v~l~v~R~   86 (112)
T 1qau_A           71 LRGIASETHVVLILRG   86 (112)
T ss_dssp             HHHSCSSSEEEEEEEC
T ss_pred             HHhCCCCcEEEEEEeC
Confidence            22 3345678888885

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.44  E-value=4e-07  Score=65.64  Aligned_cols=57  Identities=16%  Similarity=0.089  Sum_probs=43.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCC-eeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPS-ITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~-~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+  ..++.......++ .+.+.+.|.
T Consensus        33 ~gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~   92 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAE------ASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRE   92 (128)
T ss_dssp             CSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHH
T ss_pred             CCEEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeC
Confidence            599999999999999      99999999999999988776  4444433333333 445666663

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.43  E-value=2.4e-07  Score=66.75  Aligned_cols=57  Identities=7%  Similarity=-0.140  Sum_probs=44.6

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++ ||++||+|+++|+..+..  ..+...........+.+.+.|.
T Consensus        53 ~~~~V~~V~~~spA~------~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~  112 (120)
T 2iwo_A           53 VPIFIAMMHPTGVAA------QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG  112 (120)
T ss_dssp             EEEEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            589999999999999      98 999999999999988765  3333333333455678888875

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.43  E-value=2.5e-07  Score=63.54  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=40.2

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r  155 (169)
                      .| +|.+|.++|||+      ++||++||+|+++|+..+.  +..+...........+.+.+++
T Consensus        32 ~G-~V~~V~~~spA~------~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           32 NG-IICSLMRGGIAE------RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             TT-EEEEECTTSHHH------HHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             CC-EEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            36 899999999999      9999999999999999884  3334333322334455665553

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.42  E-value=5.7e-07  Score=69.47  Aligned_cols=57  Identities=7%  Similarity=-0.194  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus       136 ~gv~V~~V~~gs~A~------~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~  195 (206)
T 3r0h_A          136 IGCTIADLIQGQYPE------IDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP  195 (206)
T ss_dssp             SCEEEEEECTTSCHH------HHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             ceEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            689999999999999      999 999999999999988743  443333344456678888774

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.42  E-value=4.1e-07  Score=69.25  Aligned_cols=58  Identities=9%  Similarity=0.062  Sum_probs=46.4

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+.++.+  ..+...........+.+.+.|.
T Consensus       129 ~~gv~V~~V~~gs~A~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  189 (196)
T 3gsl_A          129 DNSIYVTKIIEGGAAH------KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP  189 (196)
T ss_dssp             BCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHH------hcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCC
Confidence            3699999999999999      999 99999999999998866  4554444444556667877774

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.42  E-value=2.5e-07  Score=62.74  Aligned_cols=57  Identities=12%  Similarity=-0.072  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh--hhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV--VWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~r~  156 (169)
                      .|+.|..+.|+|||+      ++||++||+|+++|+.++.+..++.  +........+.+.+.|+
T Consensus        19 ~G~~V~~~~~~s~A~------~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~   77 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFE------SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD   77 (87)
T ss_dssp             EEEEEEECSCHHHHH------HTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEET
T ss_pred             EEEEEEeCCCCCHHH------HCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            589999999999999      9999999999999998877665544  22233455678888885

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.42  E-value=2.8e-07  Score=65.23  Aligned_cols=54  Identities=11%  Similarity=-0.024  Sum_probs=39.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec----chhhhhhhhc-CCCCeeEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY----TTSKLVVWSI-NHPSITCHIL  153 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~----~~~~~~~~~~-~~~~~~~~~i  153 (169)
                      .+++|.+|.++|||+      +|||++||+|+++|+.++.    ++....+... ++...+.+++
T Consensus        39 ~~~~I~~V~~gSpA~------~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV   97 (101)
T 3qik_A           39 KAVVVKSVQRGSLAE------VAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLV   97 (101)
T ss_dssp             TEEEEEEECTTSHHH------HHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCHHH------HcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEE
Confidence            589999999999999      9999999999999998752    2333233322 3455555544

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.41  E-value=2e-07  Score=66.69  Aligned_cols=58  Identities=12%  Similarity=-0.013  Sum_probs=45.6

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceee--cchhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQ--YTTSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+  .+..+...........+.+.+.|..
T Consensus        42 ~~~~V~~V~~~spA~------~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  102 (117)
T 1v62_A           42 SVITIDRIKPASVVD------RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVP  102 (117)
T ss_dssp             CEEEEEECCTTSHHH------HHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBT
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            359999999999999      999 999999999999988  4444444333345667788888754

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.41  E-value=8.2e-07  Score=59.91  Aligned_cols=55  Identities=15%  Similarity=0.087  Sum_probs=39.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|..| ++|||+       +||++||+|+++|+.++.+.  .+......  .....+.+.+.|.
T Consensus        27 ~~~~v~~v-~~spA~-------aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   85 (88)
T 3bpu_A           27 GGQRVKQI-VDSPRS-------RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ   85 (88)
T ss_dssp             SSEEEEEC-CC--CC-------TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEE
T ss_pred             CcEEEEEe-cCChhH-------hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            68999888 899998       79999999999999888764  33332222  2345667887774

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.40  E-value=5.2e-07  Score=65.94  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=44.0

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhh--hhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLV--VWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~--~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++| |++||+|+++|+..+.+.  .+..  +........+.+.+.|.
T Consensus        65 ~gv~V~~V~~gspA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  126 (131)
T 1wfg_A           65 LCAFITKVKKGSLAD------TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS  126 (131)
T ss_dssp             EEEEEEEECTTSHHH------HTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence            599999999999999      999 999999999999988642  3332  22222346678888875

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.40  E-value=2.2e-07  Score=71.77  Aligned_cols=57  Identities=4%  Similarity=-0.200  Sum_probs=46.3

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++ ||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        33 ~~~~V~~v~~~spA~------~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   92 (200)
T 2qt5_A           33 GKPRVSNLRQGGIAA------RSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE   92 (200)
T ss_dssp             SCSEEEEECTTSHHH------HTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             CCeEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEecc
Confidence            689999999999999      99 9999999999999888766  555544444456678888774

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.40  E-value=2.9e-07  Score=63.69  Aligned_cols=55  Identities=13%  Similarity=-0.002  Sum_probs=42.5

Q ss_pred             EEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc--CCCCeeEEEEEEe
Q psy18070         96 VLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        96 v~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .+|.+|.++|||+      ++||++||+|+++++..+.+-.++.....  .....+.+.+.|.
T Consensus         4 p~V~~V~~~spA~------~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~   60 (95)
T 3id1_A            4 PVVGEIAANSIAA------EAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF   60 (95)
T ss_dssp             CBEEEECTTSHHH------HTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred             CEEEeeCCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEEC
Confidence            4789999999999      99999999999999888776655443322  2225678888875

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.2e-07  Score=66.33  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        32 ~g~~V~~V~~~spA~------~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   90 (106)
T 2eei_A           32 KGVYMTDITPQGVAM------RAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK   90 (106)
T ss_dssp             CSCEECCCCTTSHHH------HHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCT
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcC
Confidence            699999999999999      999999999999999887642  333322222345667777764

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.37  E-value=3.4e-07  Score=64.96  Aligned_cols=57  Identities=16%  Similarity=0.018  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      + +||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        43 ~~~~V~~V~~~spA~------~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~  102 (114)
T 1uew_A           43 VPHKIGRIIDGSPAD------RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ  102 (114)
T ss_dssp             CSCEEEEECTTCTTG------GGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCC
T ss_pred             cCeEEEEECCCChHH------HhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            378999999999999      9 99999999999999887663  333333223456667887775

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.37  E-value=3.9e-07  Score=70.81  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=40.3

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHH
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFL   49 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l   49 (169)
                      ++|+++.+++|+|||||++ +|+++||++....    .+.+|++|++.+...+
T Consensus       125 ~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~~~c~~~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          125 LIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGGTTFFQPVNPILQAY  176 (189)
T ss_dssp             EEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             eEEeeeeccCCCccCeEEE-CCEEEEEEeecCCCCCCCCcEEEEEHHHHHHHC
Confidence            4789999999999999996 8999999997642    3589999988766655

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.36  E-value=5.6e-07  Score=64.74  Aligned_cols=57  Identities=12%  Similarity=-0.036  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhh--hhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLV--VWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~--~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..++.  +........+.+.+.|.
T Consensus        45 ~~~~V~~V~~~spA~------~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  106 (122)
T 1v5q_A           45 SPPLISYIEADSPAE------RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD  106 (122)
T ss_dssp             SCCEEEEECTTSHHH------HSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCcEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEEC
Confidence            579999999999999      999 99999999999988865  33333  22222245778888885

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.34  E-value=6.8e-07  Score=64.97  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhh--hhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLV--VWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~--~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+..  +........+.+.+.|..
T Consensus        43 ~~v~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  105 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAA------LDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY  105 (129)
T ss_dssp             EEEEEEEECTTSHHH------HHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            589999999999999      999 99999999999998864  22332  222222556788888875

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.33  E-value=1.5e-07  Score=65.33  Aligned_cols=57  Identities=11%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        36 ~~~~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   95 (103)
T 1wfv_A           36 MDLYVLRLAEDGPAI------RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRG   95 (103)
T ss_dssp             EEEECCCBCTTSHHH------HHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECT
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            589999999999999      999 999999999999887653  333222223345667777774

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.33  E-value=7.5e-07  Score=68.19  Aligned_cols=58  Identities=16%  Similarity=0.027  Sum_probs=45.2

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|..|.++|||+      ++| |++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus       110 ~~gi~V~~V~~gspA~------~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          110 KLGIFVKTVTEGGAAH------RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             SBEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            3689999999999999      999 9999999999999873  33444333333556778888773

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.32  E-value=1.3e-06  Score=66.96  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=44.4

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r  155 (169)
                      ..|++|.+|.++|||+      + ||++||+|+++|+..+.+.  .+...........+.+.+.|
T Consensus        23 ~~g~~V~~v~~~spA~------~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           23 DDGIFVTRVQPEGPAS------K-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CCSEEEEEECTTSTTT------T-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCCEEEEEECCCChHH------h-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            4799999999999999      9 9999999999999887664  33333333445577888888

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.32  E-value=1.1e-06  Score=66.72  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.|+|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        34 ~~g~~V~~V~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~   94 (196)
T 3gsl_A           34 DPSIFITKIIPGGAAA------QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR   94 (196)
T ss_dssp             CCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            3699999999999999      999 999999999998887643  444444444456678888774

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.1e-07  Score=68.95  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.  +..+...........+.+.+.|.
T Consensus        61 ~gv~V~~V~~~spA~------~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~  119 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAF------EAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK  119 (126)
T ss_dssp             CCCCBCCCCSSSHHH------HHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            689999999999999      9999999999999998876  44444333333456667777664

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.31  E-value=1.1e-06  Score=79.11  Aligned_cols=57  Identities=16%  Similarity=0.152  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec-chhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY-TTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~-~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      +|||++||+|+++|+.++. .+....+...+.+..+.+.+.|+
T Consensus       496 ~gv~V~~V~~~spA~------~AGL~~GD~I~aInG~~v~~~~l~~~l~~~~~g~~v~l~v~R~  553 (597)
T 4fgm_A          496 QGLDVLNVYHDESAY------HAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRR  553 (597)
T ss_dssp             TEEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCTTTHHHHHTTCCTTCEEEEEEEET
T ss_pred             CeEEEEEeCCCChHH------HCCCCCCCEEEEECCEECCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            589999999999999      9999999999999998873 23333333334556778999885

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.31  E-value=3.5e-07  Score=65.35  Aligned_cols=57  Identities=16%  Similarity=0.049  Sum_probs=42.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+........ ...+.+.+.|+
T Consensus        42 ~gv~V~~V~~~spA~------~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~  102 (119)
T 1x6d_A           42 KVITVHRVFPNGLAS------QEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK  102 (119)
T ss_dssp             SSCEEEEECSSSHHH------HHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            699999999999999      999 99999999999988764  33333332223 33445666664

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.31  E-value=3.4e-07  Score=64.52  Aligned_cols=57  Identities=9%  Similarity=0.043  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|+
T Consensus        39 ~gv~V~~V~~~s~A~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   98 (113)
T 1um7_A           39 EGIFVSFILAGGPAD------LSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR   98 (113)
T ss_dssp             CCCBCCCBCSSSHHH------HTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEEC
Confidence            689999999999999      999 999999999998887664  343333334455667777764

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.31  E-value=1.5e-06  Score=63.28  Aligned_cols=57  Identities=11%  Similarity=-0.036  Sum_probs=43.0

Q ss_pred             CcEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch--hhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT--SKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~--~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++ ||++||+|+++|+..+...  .+........ ...+.+.+.|.
T Consensus        57 ~~i~I~~V~~gs~A~------~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~  117 (130)
T 1i16_A           57 KPLTINRIFKGAASE------QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CCCEEEEECSSCCCS------SSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence            589999999999999      99 9999999999998877653  3333222233 34567777775

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=98.30  E-value=2.6e-07  Score=72.97  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             CEeecccc---CCCCccceEEcCCccEEEEEeeeccCCeE
Q psy18070          1 MSLTGIMV---KFGNSGGPLVNLDGEVIGINSMKVTAGIS   37 (169)
Q Consensus         1 ~iq~da~i---n~GnSGGplvn~~G~vvGi~~~~~~~~~~   37 (169)
                      +|+.|.++   |||+|||||+|.+|+||||.++.-..+.+
T Consensus       112 ~i~~~~al~~T~pGdSGsPVvn~dG~VIGVHt~s~~~g~g  151 (213)
T 3fan_A          112 VIGNGFAFCFTACGDSGSPVITEAGELVGVHTGSNKQGGG  151 (213)
T ss_dssp             EEETTEEEESSCCCSTTCEEEETTSCEEEEEEC-----CC
T ss_pred             ccccCCEEEecCCCCCCCccCCCCCcEEEEEeccCCccce
Confidence            46788888   99999999999999999999987765544

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.30  E-value=6.1e-07  Score=63.15  Aligned_cols=58  Identities=10%  Similarity=0.017  Sum_probs=43.3

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcC-CCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSIN-HPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~-~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+..  ..+....... ....+.+.+.|.
T Consensus        43 ~~g~~V~~v~~~spA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           43 RSVIVIRSLVADGVAE------RSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             CEEEEEEEECTTCHHH------HHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            3689999999999999      999 99999999999888754  2333332223 234667777764

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.30  E-value=3.4e-07  Score=65.43  Aligned_cols=59  Identities=12%  Similarity=0.048  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCccccccccccc--CCCCCcEEEecCceeecch--hhhhhhhcCC----CCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA--GIKPTSSRLLGECLAQYTT--SKLVVWSINH----PSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a--GL~~GDvI~~~~~v~~~~~--~~~~~~~~~~----~~~~~~~i~r~~~  158 (169)
                      .|++|.+|.++|||+      ++  ||++||+|+++|+..+.+.  .+........    ...+.+.+.|.-.
T Consensus        41 ~~v~V~~V~~~spA~------~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           41 MPVIVSRVAPGTPAD------LCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             EEEEEEEECSSSTTT------SSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CCeEEEEECCCCHHH------HhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            589999999999999      99  9999999999998877542  3322222222    1367888888644

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.28  E-value=9.7e-07  Score=62.88  Aligned_cols=57  Identities=14%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+       +||++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus        45 ~~gv~V~~V~~~spA~-------~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  103 (117)
T 2csj_A           45 ETSIVISDVLPGGPAD-------GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP  103 (117)
T ss_dssp             CCBCEEEEECTTSSHH-------HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCCccc-------ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEEC
Confidence            4689999999999998       89999999999998877653  333333333456778888875

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.28  E-value=1e-06  Score=68.00  Aligned_cols=57  Identities=12%  Similarity=-0.076  Sum_probs=45.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc----hhhhhhhhcCCCCe-eEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT----TSKLVVWSINHPSI-TCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~----~~~~~~~~~~~~~~-~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+    ..+........... +.+.++|.
T Consensus        45 ~g~~V~~V~~~spA~------~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~  107 (206)
T 3r0h_A           45 TGCVITHVYPEGQVA------ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRA  107 (206)
T ss_dssp             SCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECC
T ss_pred             CCeEEEEECCCChHH------hcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEec
Confidence            599999999999999      998 99999999999998776    44444444444455 78888874

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=4.5e-07  Score=62.58  Aligned_cols=57  Identities=11%  Similarity=-0.074  Sum_probs=43.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+       +||++||+|+++|+..+.+  ..+...........+.+.+.|.-
T Consensus        31 ~~~~V~~V~~~spA~-------agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           31 LPLTVVAVTAGGSAH-------GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             SSCBCCCBCSSSSST-------TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CCeEEEEECCCCchh-------hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            689999999999997       8999999999999888765  33333332334567788888864

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.27  E-value=8.3e-07  Score=68.45  Aligned_cols=57  Identities=11%  Similarity=-0.011  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+.++.+  ..++..........+.+.+.|.
T Consensus       135 ~gv~V~~V~~~s~A~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  194 (196)
T 1p1d_A          135 DPLVISDIKKGSVAH------RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD  194 (196)
T ss_dssp             CCCEEEECCSSSHHH------HTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCEEEEEECCCCcHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            699999999999999      999 99999999999998776  4444333223366677877774

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.25  E-value=2.1e-06  Score=58.25  Aligned_cols=56  Identities=9%  Similarity=0.051  Sum_probs=40.8

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEEee
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLRLY  157 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r~~  157 (169)
                      |. |.+|.++|||+      ++||++||.|+++|+..+... .+.++..+ +....+.++++..|
T Consensus        25 g~-I~~v~~gspA~------~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~~   82 (82)
T 1r6j_A           25 GK-ITSIVKDSSAA------RNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF   82 (82)
T ss_dssp             TE-EEEECTTSHHH------HHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CE-EEEecCCCHHH------HcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeCC
Confidence            54 78999999999      999999999999999987443 23333333 44556677776543

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.25  E-value=1.5e-06  Score=67.15  Aligned_cols=58  Identities=12%  Similarity=0.104  Sum_probs=46.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.+  ..+... .+.....+.+.+.|.-.
T Consensus       110 ~~~~V~~V~~gspA~------~aGL~~GD~Il~vng~~v~~~~~~~~~~-~l~~~~~v~l~v~r~g~  169 (192)
T 3k1r_A          110 CGLFISHLIKGGQAD------SVGLQVGDEIVRINGYSISSCTHEEVIN-LIRTEKTVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCTTEEEEEETTEECTTCCHHHHHH-HHTSSSEEEEEEEECCE
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHH-HHcCCCeEEEEEEECCc
Confidence            589999999999999      99999999999999998866  433333 33446777888888643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.24  E-value=8.6e-07  Score=60.09  Aligned_cols=56  Identities=16%  Similarity=0.033  Sum_probs=42.9

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc-CCCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .++|.+|.++|||+      ++||++||+|+++|+.++.+..++..... .....+.+.+.|+
T Consensus         5 ~~~V~~v~~~spA~------~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~   61 (91)
T 2zpm_A            5 EPVLENVQPNSAAS------XAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQ   61 (91)
T ss_dssp             -CBCSEECTTSHHH------HTTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEET
T ss_pred             CeEEEEECCCChHH------hcCCCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence            47889999999999      99999999999999988776655543322 2344667888774

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.24  E-value=3.9e-07  Score=79.42  Aligned_cols=57  Identities=19%  Similarity=0.135  Sum_probs=47.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+..++.......+..+.+.+.|.
T Consensus       386 ~Gv~V~~V~~gspA~------~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~~~~~v~l~v~R~  442 (451)
T 3pv2_A          386 IGVQVVGASENSAGW------RAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRG  442 (451)
T ss_dssp             EEEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHHHTTSSCSCEEEEEEET
T ss_pred             CceEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHhcCCCeEEEEEEEC
Confidence            699999999999999      999999999999999988776665544444566778888885

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.24  E-value=1.2e-06  Score=68.61  Aligned_cols=60  Identities=18%  Similarity=0.086  Sum_probs=46.6

Q ss_pred             CCCCcEEEEEEccCCcccccccccccCCCCC-cEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEe
Q psy18070         91 DLTHGVLIWRVMYNSPAYFIKFRTSAGIKPT-SSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        91 ~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~G-DvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ....|++|.+|.++|||+      +|||++| |+|+++|+.++.+..  ...+........+.+.++|.
T Consensus        13 ~~~~G~~V~~V~~~SpA~------~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   75 (209)
T 3rle_A           13 GGTEGYHVLRVQENSPGH------RAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSS   75 (209)
T ss_dssp             SSSEEEEEEEECTTSHHH------HTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEET
T ss_pred             CCCCEEEEEEECCCCHHH------HCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEec
Confidence            345799999999999999      9999999 999999888766543  33344444456778888873

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.23  E-value=6.7e-07  Score=64.95  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhc-------CCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSI-------NHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~-------~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+...  .+......       .....+.+.++|..
T Consensus        55 ~gi~V~~V~~gspA~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A           55 LGIFIKSIIHGGAAF------KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             EEEEEEECCSSSSTH------HHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCEEEEEECCCCHHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence            589999999999999      999 999999999999887553  23322222       12567788888853

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.22  E-value=3e-06  Score=61.64  Aligned_cols=57  Identities=14%  Similarity=-0.025  Sum_probs=44.2

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc--CCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI--NHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++ |++||+|+++++.++.+..++.....  .....+.+.+ |.-
T Consensus        24 ~~gv~V~~V~~~spA~------~a-L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V-R~g   82 (125)
T 2hga_A           24 PDGVQIDSVVPGSPAS------KV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT-DQG   82 (125)
T ss_dssp             CCCEEEEEECSSSGGG------GT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred             CCceEEEEECCCChHH------Hh-cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE-ECC
Confidence            3699999999999999      99 99999999999988877655543332  3345667777 643

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.22  E-value=5.7e-07  Score=64.09  Aligned_cols=57  Identities=14%  Similarity=-0.038  Sum_probs=42.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .+++|..|.++|||+      ++||++||+|+++|+..+.  +..++....... ...+.+.+.|.
T Consensus        36 ~~v~V~~V~~~spA~------~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~   95 (111)
T 1vae_A           36 TPVQVHFLDPHCSAS------LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             SSCEECCCCTTSSHH------HHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence            478999999999999      9999999999999998877  444444332222 33467777664

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.19  E-value=7.3e-07  Score=64.33  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=52.3

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCC-CCCcEEEecCceeecc--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGI-KPTSSRLLGECLAQYT--TSKLVVW  141 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL-~~GDvI~~~~~v~~~~--~~~~~~~  141 (169)
                      ..+|+++....                ...|++|.+|.++|||+      ++|| ++||+|+++|+..+.+  ..++...
T Consensus        20 ~glG~~~~~~~----------------~~~~~~V~~V~~~spA~------~aGll~~GD~I~~ing~~v~~~~~~~~~~~   77 (127)
T 1b8q_A           20 GGLGFLVKERV----------------SKPPVIISDLIRGGAAE------QSGLIQAGDIILAVNDRPLVDLSYDSALEV   77 (127)
T ss_dssp             SCCSCCEEECT----------------TSSCEEECCCSSSSSHH------HHSSCCTTTCCCEETTEECSSSCHHHHHHH
T ss_pred             CcEeEEEEecC----------------CCCCEEEEEeCCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45788876532                12589999999999999      9999 9999999999988776  4444433


Q ss_pred             hcC-CCCeeEEEEEEe
Q psy18070        142 SIN-HPSITCHILLRL  156 (169)
Q Consensus       142 ~~~-~~~~~~~~i~r~  156 (169)
                      ... ....+.+.+.|.
T Consensus        78 l~~~~g~~v~l~v~R~   93 (127)
T 1b8q_A           78 LRGIASETHVVLILRG   93 (127)
T ss_dssp             HHSCCSSCEEEEEECC
T ss_pred             HHhCCCCeEEEEEEeC
Confidence            333 345678888885

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.18  E-value=3.3e-06  Score=72.43  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.+||||+      ++||++||+|+++|+..+.+  ..+......  .....+.+.+.|.
T Consensus        31 ~gi~V~~V~~gspA~------~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~   91 (391)
T 3tsz_A           31 VGIFVAGVLEDSPAA------KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK   91 (391)
T ss_dssp             TEEEEEEECTTCHHH------HTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeC
Confidence            699999999999999      99999999999999998865  333333322  3455678888875

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.16  E-value=9e-06  Score=56.03  Aligned_cols=55  Identities=13%  Similarity=-0.069  Sum_probs=40.2

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.+  +|+      ++||++||+|+++|+..+.+.  .+......  +....+.+.+.|.
T Consensus        32 ~Gv~V~~v~~--~a~------~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   90 (96)
T 1ujv_A           32 TGQRVKQILD--IQG------CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             TEEEEEEESC--GGG------STTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             CCEEEEEEec--ccc------cCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            4899999987  377      899999999999999887653  33322222  2356778888775

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.14  E-value=2.8e-06  Score=60.05  Aligned_cols=57  Identities=16%  Similarity=0.054  Sum_probs=41.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhh-hcCC---CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVW-SINH---PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~-~~~~---~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|+.....  ..+.... ....   ...+.+.+.|.
T Consensus        41 ~~~~V~~v~~~s~A~------~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~  104 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCY------KDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS  104 (109)
T ss_dssp             SSEEEEEECTTSHHH------HHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred             CCEEEEEeCCCChHH------HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence            489999999999999      999 99999999998887654  2222221 1122   34557777664

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.12  E-value=4.3e-06  Score=72.42  Aligned_cols=57  Identities=19%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+.++.+..++......++..+.+.+.|.
T Consensus       363 ~gv~V~~V~~~spA~------~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~~~~v~l~v~R~  419 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAA------QAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRG  419 (436)
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            699999999999999      999999999999999988776665554444566778888885

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.11  E-value=5e-06  Score=64.05  Aligned_cols=58  Identities=19%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeec--chhhhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQY--TTSKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.  +..++..........+.+.+.|.=
T Consensus       135 ~g~~V~~v~~~s~A~------~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (200)
T 2qt5_A          135 RPVVITCVRPGGPAD------REGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDV  195 (200)
T ss_dssp             EEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred             CCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            699999999999999      999 9999999999999887  655555444445567788888753

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.07  E-value=3.8e-06  Score=64.72  Aligned_cols=58  Identities=12%  Similarity=-0.055  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCC--CCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINH--PSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~--~~~~~~~i~r~~  157 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..++.......  ...+.+.+.|.-
T Consensus        36 ~~~~V~~v~~~spA~------~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   98 (196)
T 1p1d_A           36 SPPLISYIEADSPAE------RCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV   98 (196)
T ss_dssp             CSEEEEECCTTSHHH------HTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECS
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            689999999999999      999 99999999999888773  23333222222  456688887753

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=98.04  E-value=3.2e-06  Score=64.94  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=29.1

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ++++|+.+.+|+|||||+|.+|+||||++....
T Consensus       142 ~~~~~~~~~~GdSGGPl~~~~g~lvGI~s~g~~  174 (200)
T 2w7s_A          142 FMEFDAYAQPGNSGSPVLNSKHELIGILYAGSG  174 (200)
T ss_dssp             EEEECSCCCTTCTTCEEECTTSCEEEEEEEEC-
T ss_pred             EEEEcceeCCCCccCeEECcCCEEEEEEecccc
Confidence            468899999999999999999999999997643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.04  E-value=7.4e-06  Score=71.93  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhc--CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.+||||+      ++||++||+|+++|+..+.+  ..+......  .....+.+.+.|+
T Consensus        23 ~Gi~V~~V~~gspA~------~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~   83 (468)
T 3shw_A           23 VGIFVAGVLEDSPAA------KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK   83 (468)
T ss_dssp             TEEEEEEECSSSHHH------HTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEEC
Confidence            699999999999999      99999999999999998866  333333322  2456778888883

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=98.00  E-value=3.7e-06  Score=64.87  Aligned_cols=30  Identities=30%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeee
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      |+|+|++++||+|||||++. +++|||++..
T Consensus       131 ~i~t~~~~~~GdSGgpl~~~-~~~vGi~s~~  160 (187)
T 1hpg_A          131 MVRTTACSAGGDSGGAHFAG-SVALGIHSGS  160 (187)
T ss_dssp             EEEECCCCCTTCTTCEEEET-TEEEEEEEEE
T ss_pred             eEEeccccCCCCCCCeEEEC-CEEEEEEEee
Confidence            58999999999999999987 5999998864

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=97.99  E-value=1.3e-06  Score=69.75  Aligned_cols=40  Identities=40%  Similarity=0.483  Sum_probs=33.2

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeeccCCeEEEEehhh
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDY   44 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~~~   44 (169)
                      +++++.+.+|+|||||+|.+|+||||++....   +|++|++.
T Consensus       175 ~~~~~~~~~GdSGGPlv~~~g~lvGI~s~g~~---~~~ipi~~  214 (246)
T 1qtf_A          175 SQYFGYTEVGNSGSGIFNLKGELIGIHSGKGG---QHNLPIGV  214 (246)
T ss_dssp             SBEESCCCGGGTTCEEECTTCCEEEEEEEEET---TTTEEEEE
T ss_pred             EEEeCCCCCCCchhheECCCCEEEEEEecccc---Cccccchh
Confidence            36788899999999999999999999998753   46777654

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.97  E-value=5.6e-06  Score=59.21  Aligned_cols=56  Identities=7%  Similarity=-0.078  Sum_probs=41.7

Q ss_pred             cEEEEEEccCCccccccccccc-CCCCCcEEEecCceeecch--hhh--hhhhc--CCCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSA-GIKPTSSRLLGECLAQYTT--SKL--VVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~a-GL~~GDvI~~~~~v~~~~~--~~~--~~~~~--~~~~~~~~~i~r~  156 (169)
                      .++|.+|.++|||+      ++ ||++||.|+++|+..+...  .+.  .+...  .....+.+.+.|.
T Consensus        44 ~i~I~~V~~gspA~------~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           44 KVVVSAVYEGGAAE------RHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SEEEEECCTTSHHH------HHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            49999999999999      99 9999999999998887652  122  22222  1255678888874

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.96  E-value=2.2e-05  Score=70.01  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=63.8

Q ss_pred             ceecEEEEECCHHHHHHhhcccC------------CCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceee
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRH------------IPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQ  132 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~------------~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~  132 (169)
                      .+.|+.+.+|+++++++++.+..            .......||+|++|.++++|+      .+|+++||+|+++|+.++
T Consensus       374 ~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~------~~g~~~gdiI~~vNg~~V  447 (539)
T 4fln_A          374 IVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNI------GYEDMNNQQVLKFNGIPI  447 (539)
T ss_dssp             CSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGT------TCSSCCSEEEEEETTEEC
T ss_pred             cccceEEeeCCHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhh------hcCCCCCCEEEeECCEEc
Confidence            35899999999988776544321            111334699999999999999      999999999999999999


Q ss_pred             cchhhhhhhhcC-CCCeeEEEEEEee
Q psy18070        133 YTTSKLVVWSIN-HPSITCHILLRLY  157 (169)
Q Consensus       133 ~~~~~~~~~~~~-~~~~~~~~i~r~~  157 (169)
                      .+..++.....+ +...+.+.+.+.+
T Consensus       448 ~s~~~l~~~l~~~k~~~l~~~~~~~~  473 (539)
T 4fln_A          448 RNIHHLAHLIDMCKDKYLVFEFEDNY  473 (539)
T ss_dssp             CSHHHHHHHHHTCCSSEEEEEETTSC
T ss_pred             CCHHHHHHHHHHcCCCeEEEEECCCE
Confidence            888777754433 3444455444433

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=97.92  E-value=1.3e-05  Score=64.95  Aligned_cols=52  Identities=29%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--CCeEEEEehhhHHHHHHhhh
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--~~~~faiP~~~i~~~l~~l~   53 (169)
                      ++++++...+|+|||||++.+|+||||++....  .+.+++++ ..+...+++.+
T Consensus       157 ~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~~i  210 (268)
T 1wcz_A          157 AMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQNI  210 (268)
T ss_dssp             EEEESBCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHHHC
T ss_pred             eEEEecccCCCCccCeEEccCCEEEEEEeCCccCCcceeEEcC-HHHHHHHHHHH
Confidence            468899999999999999989999999998764  23567775 44555555444

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=97.91  E-value=2.8e-06  Score=67.38  Aligned_cols=56  Identities=18%  Similarity=0.116  Sum_probs=41.6

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeec--chhhhhhhhcCCCCee-EEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQY--TTSKLVVWSINHPSIT-CHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~--~~~~~~~~~~~~~~~~-~~~i~r  155 (169)
                      .|++|..|.++|||+      ++||++||+|+++|+..+.  +..++..........+ .+.+.|
T Consensus        33 ~gv~V~~V~~gSpA~------~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R   91 (216)
T 2krg_A           33 PGQFIRSVDPDSPAE------ASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR   91 (216)
T ss_dssp             CSCBEEEECTTSHHH------HHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCH
T ss_pred             CCeEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEE
Confidence            599999999999999      9999999999999998877  4444432222224445 555554

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.90  E-value=7.2e-06  Score=66.97  Aligned_cols=57  Identities=9%  Similarity=-0.086  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCcccccccccc-cCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTS-AGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~-aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      + +||++||+|+++|++.+.+.  .+...........+.+.+.|.
T Consensus       103 ~gi~V~~V~~gspA~------~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~  162 (263)
T 1z87_A          103 MPILISKIFKGLAAD------QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM  162 (263)
T ss_dssp             EEEEEEECCTTSHHH------HCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECC
T ss_pred             CCEEEEEECCCCHHH------HhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeC
Confidence            589999999999999      9 79999999999998887663  333333333455678888874

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=97.90  E-value=1.4e-05  Score=64.92  Aligned_cols=52  Identities=29%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--CCeEEEEehhhHHHHHHhhh
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--~~~~faiP~~~i~~~l~~l~   53 (169)
                      ++++++.+.+|+|||||++.+|+||||++....  .+.++++. ..+...+++.+
T Consensus       157 ~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~~i  210 (274)
T 2o8l_A          157 AMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQNI  210 (274)
T ss_dssp             EEEESCCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHHHC
T ss_pred             eEEeCcccCCCCchhheeccCCeEEEEEeCcccCCCCceEEec-HHHHHHHHHHH
Confidence            468899999999999999999999999998764  23566664 33444454443

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=97.89  E-value=1e-05  Score=63.93  Aligned_cols=33  Identities=36%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ++|+|+.+.+|+|||||+|.+|+||||++....
T Consensus       183 ~~~~~~~~c~GdSGGPl~~~~g~lvGI~s~g~~  215 (242)
T 1agj_A          183 GLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVS  215 (242)
T ss_dssp             SEEEECCCCGGGTTCEEECTTSEEEEEEEEEEE
T ss_pred             eEEEeCCcCCCCCchHhcccCCEEEEEEecccc
Confidence            368899999999999999999999999998764

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.88  E-value=3.3e-05  Score=65.68  Aligned_cols=57  Identities=14%  Similarity=0.003  Sum_probs=43.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhh-hcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVW-SINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~-~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++++.++.+.  .+.... .......+.+.+.|.
T Consensus        99 ~~~~V~~v~~~spA~------~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~  158 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAE------KAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP  158 (388)
T ss_dssp             SCEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             CcEEEEEeCCCChHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeC
Confidence            689999999999999      999999999999999887763  222222 223344567777764

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=97.80  E-value=1e-05  Score=61.79  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++++++...+|+|||||+|.+|+||||++...
T Consensus       145 ~~~~~~~~~~GdSGGPl~~~~g~lvGI~s~g~  176 (204)
T 2vid_A          145 SIVYSAHTESGNSGSPVLNSNNELVGIHFASD  176 (204)
T ss_dssp             EEEECCCCCGGGTTCEEECTTSCEEEEEEEEC
T ss_pred             eEEEecccCCCCccCcEECCCCeEEEEEecCc
Confidence            46788999999999999999999999999765

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.77  E-value=1.3e-05  Score=55.96  Aligned_cols=35  Identities=17%  Similarity=-0.018  Sum_probs=31.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT  134 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~  134 (169)
                      .+++|..|.++|||+      ++| |++||.|+++|+.....
T Consensus        32 ~~~~I~~v~~~s~A~------~aG~L~~GD~Il~Vng~~v~~   67 (103)
T 1ufx_A           32 PLPRIVTIQRGGSAH------NCGQLKVGHVILEVNGLTLRG   67 (103)
T ss_dssp             SSCEEEEECTTSHHH------HHCSSCTTCBCCEETTEECTT
T ss_pred             CcEEEEEeCCCChHH------HCCCCCCCCEEEEECCEECCC
Confidence            356999999999999      999 99999999999988754

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.77  E-value=3.5e-06  Score=73.36  Aligned_cols=57  Identities=21%  Similarity=0.172  Sum_probs=0.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||+|+++|+..+.+..++.......+..+.+.+.|.
T Consensus       383 ~gv~V~~V~~gspA~------~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~~~v~l~v~R~  439 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAA------QIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRG  439 (448)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHH------HcCCCCCCEEEEECCEECCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            689999999999999      999999999999888777655444433333344667777775

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.76  E-value=2.8e-05  Score=66.93  Aligned_cols=55  Identities=15%  Similarity=-0.057  Sum_probs=40.9

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .++|..|.++|||+      +|||++||+|+++++..+.... ...........+.+.+.|.
T Consensus        91 ~~~V~~V~~gsPA~------~AGL~~GD~I~~InG~~v~~~~-~~~~l~~~g~~v~l~v~R~  145 (403)
T 3k50_A           91 NALISYVVPGSPAE------EAGLQRGHWIMMMNGDYITKKV-ESELLQGSTRQLQIGVYKE  145 (403)
T ss_dssp             EEEEEEECTTSHHH------HTTCCTTCEEEEETTBCBCTTT-GGGGTSCSCEEEEEEEEEE
T ss_pred             eEEEEEeCCCChHH------HcCCCCCCEEEEECCEEccchh-HHHHhhCCCCEEEEEEEeC
Confidence            48899999999999      9999999999999888766542 2222222344557777775

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.75  E-value=4.1e-05  Score=70.14  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+  ..+...........+.+.+.|+
T Consensus       331 ~gv~V~~V~~gs~A~------~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~  390 (721)
T 2xkx_A          331 EGIFISFILAGGPAD------LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK  390 (721)
T ss_pred             CCeEEEEeCCCChHH------hcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence            699999999999999      999 99999999999998765  2333333333455567777664

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=97.68  E-value=2.7e-05  Score=59.13  Aligned_cols=31  Identities=29%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++|+|+..+||+|||||++.+ ++|||++...
T Consensus       125 ~i~~~~c~~~GDSGGPlv~~~-~~vGI~s~g~  155 (181)
T 2sga_A          125 MIQTNVCAQPGDSGGSLFAGS-TALGLTSGGS  155 (181)
T ss_dssp             EEEESCCCCTTCTTCEEEETT-EEEEEEEEEE
T ss_pred             eEecccccCCCCCCCEEEECC-EEEEEEEeeC
Confidence            368899999999999999876 9999998753

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=97.65  E-value=0.00016  Score=51.88  Aligned_cols=56  Identities=9%  Similarity=-0.062  Sum_probs=41.2

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhh--hcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVW--SINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~--~~~~~~~~~~~i~r~~  157 (169)
                      .|..|..|.+  ||.      .+||++||+|+++|+..+.+.  .+....  ..+....+.+.+.|.-
T Consensus        34 ~g~~V~~I~~--~~~------~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g   93 (113)
T 3soe_A           34 TGQKVKMILD--SQW------CQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGG   93 (113)
T ss_dssp             TEEEEEEESC--GGG------STTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESS
T ss_pred             CCcEEEEecC--hHH------hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            4778999876  688      899999999999999887754  233322  2233557799999964

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=97.61  E-value=3.2e-05  Score=60.24  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeeccCCeEE
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISF   38 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~f   38 (169)
                      +|++   +||+||||++|.+ +||||+++..+.+-++
T Consensus       106 l~~t---~PGDSGsPVl~~~-~vIGV~T~s~s~gs~~  138 (198)
T 1mbm_A          106 LAWT---TSGDSGSAVVQGD-AVVGVHTGSNTSGVAY  138 (198)
T ss_dssp             ECCC---CGGGTTCEEEETT-EEEEEEEEEEGGGEEE
T ss_pred             eEcC---CCCCCCCccccCC-eEEEEEeccCCCCcee
Confidence            5666   9999999999999 9999999854444443

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.53  E-value=0.00013  Score=66.80  Aligned_cols=58  Identities=9%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||+|+++|+..+.+.  .+...........+.+.+.|.
T Consensus       183 ~~gv~V~~V~~gs~A~------~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~  243 (721)
T 2xkx_A          183 DNSIYVTKIIEGGAAH------KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP  243 (721)
T ss_pred             CCceEEEEeCCCCchh------hcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3699999999999999      999 999999999998887664  233323223345667888774

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=97.52  E-value=0.00042  Score=48.23  Aligned_cols=56  Identities=9%  Similarity=-0.121  Sum_probs=39.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhh--hhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLV--VWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~--~~~~~~~~~~~~~i~r  155 (169)
                      ..++|.+|.++|||+      +.| |++||.|+++|++.+..-  .+..  +...+......+.+.+
T Consensus        28 g~~~I~rI~~gg~a~------r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~   88 (95)
T 3gge_A           28 GYAFIKRIKDGGVID------SVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE   88 (95)
T ss_dssp             SCCEEEEECTTSHHH------HCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CcEEEEEEcCCChHH------hcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence            458899999999999      876 999999999999987553  2333  2333344455555544

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=97.49  E-value=6.2e-05  Score=58.13  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=27.5

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++|+++.++||+|||||+. +|+++||++...
T Consensus       131 ~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~  161 (188)
T 2oua_A          131 LTRTSVCAEPGDSGGSFIS-GTQAQGVTSGGS  161 (188)
T ss_dssp             EEEESCCCCTTCTTCEEEE-TTEEEEEEEEEE
T ss_pred             eEeeeeecCCCCccceEEE-CCEEEEEEeccC
Confidence            4789999999999999994 899999998753

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.39  E-value=9.3e-05  Score=63.15  Aligned_cols=57  Identities=9%  Similarity=0.019  Sum_probs=42.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhh--hhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVV--WSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~--~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||+|+++|+..+.+-  .+...  ........+.+.+.|.
T Consensus       232 ~g~~V~~V~~gspA~------~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~  293 (388)
T 3suz_A          232 PTVILANMMNGGPAA------RSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC  293 (388)
T ss_dssp             CCCBCCCCCCSSHHH------HTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEEC
T ss_pred             CCEEEEeeCCCCHHH------HcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccc
Confidence            469999999999999      999 999999999999887544  33222  2222334567777774

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=97.36  E-value=0.00013  Score=55.47  Aligned_cols=30  Identities=33%  Similarity=0.454  Sum_probs=26.2

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      +|+++..++|+|||||++.+ +++||++...
T Consensus       130 ~~~~~cac~GDSGGPlv~~~-~~vGI~s~g~  159 (185)
T 2qa9_E          130 IRTNVCAEPGDSGGPLYSGT-RAIGLTSGGS  159 (185)
T ss_dssp             EEESCCCCTTCTTCEEEETT-EEEEEEEEEE
T ss_pred             EEecccCCCCCccceEEECC-EEEEEEEecC
Confidence            67888899999999999865 9999998753

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.26  E-value=0.00043  Score=51.70  Aligned_cols=34  Identities=15%  Similarity=0.013  Sum_probs=30.4

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~  135 (169)
                      | +|.+|.++|||+      ++||++||+|+++|+..+.+.
T Consensus       109 g-~v~~v~~~s~a~------~aGl~~GD~I~~ing~~v~~~  142 (166)
T 1w9e_A          109 G-KITSIVKDSSAA------RNGLLTEHNICEINGQNVIGL  142 (166)
T ss_dssp             T-EEEEECTTSHHH------HTTCCSSEEEEEETTEECTTC
T ss_pred             C-EEEEEccCCHHH------HcCCCCCCEEEEECCEECCCC
Confidence            5 899999999999      999999999999988876553

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=97.24  E-value=0.0002  Score=55.22  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc--CCeEEEEehhhHHHHHHhh
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~--~~~~faiP~~~i~~~l~~l   52 (169)
                      ++|+++.+++|+|||||+. +|+++||++....  ..-+..+= ..+..+++++
T Consensus       128 ~~~~~~c~~~GDSGgpl~~-~~~~vGi~s~g~~~c~~~~~~~~-~pi~~~l~~~  179 (186)
T 2pfe_A          128 LTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRSGGITFF-QPINPLLSYF  179 (186)
T ss_dssp             EEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEEETTTEEEEEE-EEHHHHHHHH
T ss_pred             eEeccEEecCCCccCeEEE-CCEEEEEEeecCCCCCCCCcEEE-EEHHHHHHHC
Confidence            3688999999999999995 8899999997642  12233332 2355555443

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.04  E-value=9.2e-05  Score=63.18  Aligned_cols=56  Identities=13%  Similarity=-0.011  Sum_probs=0.0

Q ss_pred             cEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc--hhhhhhhhcCCCCeeEEEEEEe
Q psy18070         95 GVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT--TSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        95 Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      +.+|.+|.++|||+      ++||++||+|+++|+..+.+  ..+...........+.+.++..
T Consensus       316 ~g~I~~V~~gs~A~------~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~  373 (388)
T 3suz_A          316 NGIICSLMRGGIAE------RGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA  373 (388)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cCEEEEeecCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence            44899999999999      99999999999999888753  3333323233444556666544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.90  E-value=0.0021  Score=59.98  Aligned_cols=56  Identities=9%  Similarity=-0.140  Sum_probs=43.3

Q ss_pred             CcEEEEEEccC--------CcccccccccccC--CCCCcEEEecCceeecchhhhhhhh-cCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYN--------SPAYFIKFRTSAG--IKPTSSRLLGECLAQYTTSKLVVWS-INHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~--------spA~~~~~~~~aG--L~~GDvI~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++        |||+      ++|  |+ ||+|+++++.++....+..... ......+.+.+.|.
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~------~ag~~l~-GD~I~~i~g~~~~~~~~~~~~~~~~~g~~v~l~v~r~  814 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIF------EYGIDPT-GYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGK  814 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGG------GGTCCCT-TCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEEECS
T ss_pred             CEEEEEEecCCCcccccCCChHH------HCCCCcC-CCEEEEECCEEccchhhHHHhhcCCCCCEEEEEEECC
Confidence            58999999998        9999      999  99 9999999998877654433332 23455678888873

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=95.22  E-value=0.012  Score=45.05  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeeccCCeEEEEehh
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPID   43 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~~   43 (169)
                      ....+|+|||||+..+|.++||++....-+-...++++
T Consensus       164 ~~~C~GDSGgPl~~~~g~lvGi~S~g~~c~~~p~v~t~  201 (215)
T 1p3c_A          164 IDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKA  201 (215)
T ss_dssp             CCCCTTCTTCEEECTTSCEEEECCEEEGGGTEEEEEBC
T ss_pred             cccCCCCCCCeeEccCCeEEEEEecccCCCccCceeEe
Confidence            45789999999998899999998876544434455543

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=94.14  E-value=0.036  Score=42.59  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=21.9

Q ss_pred             cccCCCCccceEEcCCccEEEEEeee
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      .....|+|||||+..+|.++||.+..
T Consensus       173 ~~~C~GDSGgPL~~~~g~l~Gi~S~g  198 (224)
T 1pq7_A          173 KDSCQGDSGGPIVDSSNTLIGAVSWG  198 (224)
T ss_dssp             CBCCTTCTTCEEECTTCCEEEEEEEC
T ss_pred             CCCCcCCCCcceECcCCeEEEEEEeC
Confidence            34568999999998899999998764

>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A

Probab=94.09  E-value=0.062  Score=38.92  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      -.||+||-|++|-.|+||+|+-....++...|+.+
T Consensus        96 g~~GdSGrpI~Dn~GrVVaIVlGG~~eg~rtaLSV  130 (149)
T 1vcp_A           96 GKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSV  130 (149)
T ss_dssp             CCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCCccCcCCCcEEEEEecCCCCCCceeEEE
Confidence            46999999999999999999988877776666653

>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} SCOP: b.47.1.3

Probab=94.07  E-value=0.019  Score=43.49  Aligned_cols=25  Identities=36%  Similarity=0.631  Sum_probs=20.9

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      -..+|.||.|++|.+|+|||+---.
T Consensus       114 D~p~GtSGSPIin~~G~vVGLYGNG  138 (172)
T 2fp7_B          114 DYPTGTSGSPIVDKNGDVIGLYGNG  138 (172)
T ss_dssp             CCCGGGTTCEEECTTSCEEEESCCE
T ss_pred             CCCCCCCCCceEccCCcEEEEecce
Confidence            3568999999999999999985433

>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A

Probab=93.94  E-value=0.067  Score=39.28  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      -.||+||-|++|-.|+||+|+-....++...|+.+
T Consensus       105 G~~GDSGRpI~DN~GrVVaivlgg~~eg~rtaLSV  139 (161)
T 1svp_A          105 GGRGDAGRPIMDNSGRVVAIVLGGADEGTRTALSV  139 (161)
T ss_dssp             CCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCCccCcCCCcEEEEEecCCCCCCceeEEE
Confidence            35899999999999999999988877776666654

>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} SCOP: b.47.1.3

Probab=93.92  E-value=0.03  Score=43.27  Aligned_cols=23  Identities=39%  Similarity=0.751  Sum_probs=20.0

Q ss_pred             ccCCCCccceEEcCCccEEEEEe
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINS   29 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~   29 (169)
                      -..+|.||.|++|.+|+|||+=-
T Consensus       133 D~p~GTSGSPIin~~G~VVGLYG  155 (198)
T 3e90_B          133 DFPTGTSGSPIVDKNGDVIGLYG  155 (198)
T ss_dssp             CCCTTCTTCEEECTTCCEEEECC
T ss_pred             CCCCCCCCCceecCCCcEEEEec
Confidence            35689999999999999999843

>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} SCOP: b.47.1.3 PDB: 1ep6_A 3j0c_C

Probab=93.87  E-value=0.054  Score=39.65  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      .-.||+||-|++|-.|+||+|+-....++...|+.+
T Consensus       102 ~g~~GdSGrpI~Dn~GrVVaIVlGGa~eg~rtaLSV  137 (157)
T 1ep5_B          102 VGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSV  137 (157)
T ss_dssp             CCCTTCTTCEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCccCcCCCcEEEEEecCCCCCCceeEEE
Confidence            457999999999999999999887777666666553

>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein-prote complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A

Probab=93.80  E-value=0.023  Score=43.57  Aligned_cols=25  Identities=32%  Similarity=0.581  Sum_probs=20.8

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      -..+|.||.|++|.+|+|||+---.
T Consensus       129 D~p~GTSGSPIin~~G~vvGLYGNG  153 (185)
T 2fom_B          129 DFSPGTSGSPIVDKKGKVVGLYGNG  153 (185)
T ss_dssp             CSCGGGTTCEEECTTSCEEEETTCE
T ss_pred             CCCCCCCCCceEccCCcEEEEecce
Confidence            3568999999999999999984433

>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B

Probab=93.77  E-value=0.024  Score=43.44  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=21.4

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      -..+|.||.|++|.+|+|||+---.
T Consensus       128 D~p~GTSGSPIin~~G~vvGLYGNG  152 (185)
T 2ggv_B          128 DFPTGTSGSPIVDKNGDVIGLYGNG  152 (185)
T ss_dssp             CCCGGGTTCEEECTTSCEEEEEEEE
T ss_pred             CCCCCCCCCceEcCCCcEEEEecce
Confidence            3568999999999999999986544

>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} SCOP: b.47.1.3 PDB: 3u1i_B

Probab=93.74  E-value=0.034  Score=42.80  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=20.0

Q ss_pred             ccCCCCccceEEcCCccEEEEEe
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINS   29 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~   29 (169)
                      -..+|.||.|++|.+|+|||+=-
T Consensus       138 D~p~GTSGSPIin~~G~VVGLYG  160 (191)
T 3u1j_B          138 DFKPGTSGSPIINREGKVVGLYG  160 (191)
T ss_dssp             CCCTTCTTCEEECTTSCEEEECC
T ss_pred             CCCCCCCCCceecCCCcEEEEec
Confidence            35689999999999999999843

>4agk_A Capsid protein, coat protein, C; hydrolase, viral protein; 1.81A {Aura virus} PDB: 4agj_A 1kxa_A 2snw_A 1svp_A 1kxb_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A

Probab=93.69  E-value=0.08  Score=38.77  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      ..-.||.||-|.+|-.|+||+|+-...++|.-.|+.+
T Consensus       102 g~g~~GdSGrPi~Dn~GrVVaIVlGG~neG~RtaLSV  138 (158)
T 4agk_A          102 GAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSV  138 (158)
T ss_dssp             TSSCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             ccCCCCCCCCccccCCCCEEEEEecCCCcCceeeEEE
Confidence            3457999999999999999999988877776555543

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=93.55  E-value=0.14  Score=39.06  Aligned_cols=50  Identities=18%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeecc---CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVT---AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~---~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      .....|+|||||+. +|+++||.+....   ...+...-+......+++..+..
T Consensus       179 ~~~C~GDsGgPl~~-~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~~i~~~  231 (235)
T 3h7t_A          179 TYIGYGDAGDPAVQ-NGTLVGVASYISSMPSEFPSVFLRVGYYVLDIKDIISGK  231 (235)
T ss_dssp             BBCCTTCTTCEEEE-TTEEEEEECCCTTCCTTSCEEEEEGGGGHHHHHHHHTTC
T ss_pred             CccccCCCCCceee-CCeEEEEEEecCCCCCCCCceEEEHHHHHHHHHHHHhCC
Confidence            34567999999996 8899999997653   23456666666666666655443

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}

Probab=93.41  E-value=0.082  Score=41.87  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      =.||+||-|++|-.|+||+|+-.+.++|.-.|+.+
T Consensus       200 G~~GDSGRpI~DN~GrVVaIVLGGanEG~RTaLSV  234 (253)
T 2yew_A          200 GKPGDSGRPIFDNTGKVVAIVLGGANEGARTALSV  234 (253)
T ss_dssp             CCSSCTTCEEECSSCBEEEEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCCccccCCCcEEEEEecCCCcCCceeEEE
Confidence            36899999999999999999988888887777654

>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A

Probab=93.26  E-value=0.044  Score=43.44  Aligned_cols=22  Identities=36%  Similarity=0.836  Sum_probs=19.6

Q ss_pred             cCCCCccceEEcCCccEEEEEe
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINS   29 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~   29 (169)
                      ..+|.||.|++|.+|+|||+=-
T Consensus       180 ~p~GTSGSPIin~~G~VvGLYG  201 (236)
T 3lkw_A          180 FKPGTAGSPIVNREGKIVGLYG  201 (236)
T ss_dssp             CCTTCTTCEEECTTSCEEEESC
T ss_pred             CCCCCCCCceecCCCcEEEEec
Confidence            5689999999999999999843

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=92.63  E-value=0.21  Score=38.24  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhc
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      ....|+|||||+. +++++||.+....     ...+...-+...+..+++..+.
T Consensus       178 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  230 (238)
T 4e7n_A          178 DTCKGDSGGPLIC-NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAG  230 (238)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTT
T ss_pred             ccCCCCCCcceEE-CCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhc
Confidence            3567999999995 7899999997753     2245556666666666655544

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=92.62  E-value=0.22  Score=37.99  Aligned_cols=48  Identities=21%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhc
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      ....|+|||||+. +++++||.+....     ...+...-+...+..+++..+.
T Consensus       174 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  226 (234)
T 3s69_A          174 DTCGGDSGGPLIC-NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAG  226 (234)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             ccCCCCCccceEE-cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcC
Confidence            4567999999995 7899999997753     1245566666666666665544

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A

Probab=92.59  E-value=0.098  Score=41.75  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      =-||+||-|++|-.|+||+|+-.+.++|.-.|+.+
T Consensus       210 G~~GDSGRpI~DN~GrVVaIVLGGaneG~RTaLSV  244 (264)
T 1kxf_A          210 GGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSV  244 (264)
T ss_dssp             CCTTCTTCEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCccccCCCcEEEEEecCCCcCCceeEEE
Confidence            35899999999999999999988877776666654

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=92.48  E-value=0.18  Score=40.41  Aligned_cols=49  Identities=31%  Similarity=0.613  Sum_probs=36.1

Q ss_pred             eeccccCCCCccceEEcC-CccEEEEEeeecc-CCeEEEEehh--hHHHHHHh
Q psy18070          3 LTGIMVKFGNSGGPLVNL-DGEVIGINSMKVT-AGISFAIPID--YAIEFLTN   51 (169)
Q Consensus         3 q~da~in~GnSGGplvn~-~G~vvGi~~~~~~-~~~~faiP~~--~i~~~l~~   51 (169)
                      ++-.+..+|+-|+|||+. +|.+||+.+.... ...+|+.|+.  ....+|..
T Consensus       141 kHwIsT~~G~CGlPlVs~~Dg~IVGiHsl~~~~~~~N~F~~f~~~f~~~~L~~  193 (241)
T 3mmg_A          141 QHWITTKDGQAGSPLVSIIDGNILGIHSLTHTTNGSNYFVEFPEKFVATYLDA  193 (241)
T ss_dssp             EECBCCCTTCTTCEEEETTTCCEEEEEEEEETTTCCEEEEECCTTHHHHHTTC
T ss_pred             EEEcCCCCCcCCCeEEEcCCCcEEEEEecccCCCCcEEEEcCCHHHHHHHhhC
Confidence            466788999999999998 7999999998764 3456666653  33334444

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=92.34  E-value=0.12  Score=40.04  Aligned_cols=28  Identities=32%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             cccCCCCccceEEcC---CccEEEEEeeecc
Q psy18070          6 IMVKFGNSGGPLVNL---DGEVIGINSMKVT   33 (169)
Q Consensus         6 a~in~GnSGGplvn~---~G~vvGi~~~~~~   33 (169)
                      ++...|+|||||+..   .++++||++....
T Consensus       162 Ca~~~GDSGGPlv~~~~g~~~lvGIvS~G~g  192 (218)
T 3cp7_A          162 CNMTGGSSGGPWFLGNGTGGAQNSTNSYGYT  192 (218)
T ss_dssp             CCCCTTCTTCEEEESSSSSSCEEEECCEEET
T ss_pred             CCCCCCCcCCeeEEccCCCeEEEEEEccccC
Confidence            344579999999965   3799999997754

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=92.30  E-value=0.26  Score=37.69  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      ....|+|||||+. +++++||.+....     ...+...-+...+..+++.++..
T Consensus       174 ~~C~GDSGgPl~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  227 (234)
T 3s9c_A          174 DTCHGDSGGPLIC-NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN  227 (234)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ccCCCCCCCeEEE-eCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCC
Confidence            3457999999995 7899999987753     12456666666666666665543

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=91.99  E-value=0.097  Score=42.25  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             cCCCCccceEEcCCccEEEEEeeec
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      .-.|+|||||++.+++++||.+...
T Consensus       189 tC~gdsGgPl~~~~~~~~Gi~s~g~  213 (268)
T 1arb_A          189 TEPGSSGSPIYSPEKRVLGQLHGGP  213 (268)
T ss_dssp             CCTTCTTCEEECTTSCEEEEEEECS
T ss_pred             CccCcccCCcEeeCCEEEEEEeecC
Confidence            5689999999987899999999764

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=91.93  E-value=0.36  Score=37.11  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             cccCCCCccceEEcCCccEEEEEeee-cc----CCeEEEEehhhHHHHHHhhhhc
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMK-VT----AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~-~~----~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      .....|+|||||+- +|+++||.+.. ..    ...+...-+......+++..+.
T Consensus       170 ~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (231)
T 2aiq_A          170 KDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG  223 (231)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             CcccCCcCCCcEEE-CCEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence            34568999999996 68999999987 32    2245556666666666555443

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=91.58  E-value=0.32  Score=37.28  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+- +|+++||.+....    ...+...-+......+++.
T Consensus       175 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  223 (228)
T 1fxy_A          175 DSCQGDSGGPVVC-NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT  223 (228)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHH
T ss_pred             ccccCccccceEE-CCEEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHH
Confidence            4568999999995 7899999997653    2244455555544444443

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=91.28  E-value=0.47  Score=36.46  Aligned_cols=46  Identities=26%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ....|+|||||+- ++.++||.+....     ...+...-+...+..+++..
T Consensus       183 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  233 (237)
T 2zch_P          183 STCSGDSGGPLVC-NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI  233 (237)
T ss_dssp             BCCTTCTTCEEES-SSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             cccCCCccCeEEE-CCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence            4568999999995 7899999997652     22455566665555555443

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=91.18  E-value=0.49  Score=36.06  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeec-c--CCeEEEEehhhHHHHHHhhhhc
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKV-T--AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~-~--~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      .....|+|||||+.. |.++||.+... .  .+.+...-+...+..+++..+.
T Consensus       168 ~~~C~GDSGgPl~~~-g~l~Gi~S~g~~~C~~~p~vyt~V~~~~~WI~~~~~~  219 (225)
T 1a7s_A          168 GGICNGDGGTPLVCE-GLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             CBCCTTCTTCEEEET-TEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred             CCcccCCCcchheeC-CEEEEEEEEccCCcCCCCcEEEEhHHhHHHHHHHhcC
Confidence            356789999999964 89999999873 2  2255666666666666555443

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=91.15  E-value=0.36  Score=34.89  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee-cc----CCeEEEEehhhHHHHHHh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK-VT----AGISFAIPIDYAIEFLTN   51 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~-~~----~~~~faiP~~~i~~~l~~   51 (169)
                      ..-.|.|||||+- +|+++||.+.. ..    ...+...-+......+++
T Consensus        98 ~~C~GDsGgPL~~-~g~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  146 (152)
T 2pka_B           98 DTCMGDSGGPLIC-NGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDD  146 (152)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             cccCCccccceEE-CCEEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            4567999999996 58999999976 32    123555555554444444

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=91.03  E-value=0.33  Score=37.49  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             cCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ...|+|||||+. +|.++||.+....     ...+...-+...+..+++..
T Consensus       187 ~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (240)
T 1sgf_A          187 TCEHDSGGPLIC-DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM  236 (240)
T ss_dssp             ECCCCTTCEEEE-TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHH
T ss_pred             CCCCCCcCcEEE-ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHH
Confidence            567999999996 7899999997631     12455555655555555443

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=90.98  E-value=0.15  Score=39.17  Aligned_cols=46  Identities=24%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ....|+|||||+ .+|.++||.+....     ...+...-+......+++..
T Consensus       172 ~~C~GDSGgPL~-~~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~  222 (226)
T 1azz_A          172 GTCNGDSGGPLN-YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT  222 (226)
T ss_dssp             BCCTTCTTCEEE-ETTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHH
T ss_pred             ccCCCCCCcceE-ECCEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHh
Confidence            356899999999 58999999997752     22456666666555555443

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=90.91  E-value=0.17  Score=38.59  Aligned_cols=25  Identities=48%  Similarity=0.864  Sum_probs=20.7

Q ss_pred             cccCCCCccceEEcCCccEEEEEeee
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      .....|+|||||+. +|.++||.+..
T Consensus       169 ~~~C~GDSGgPL~~-~~~l~Gi~s~~  193 (221)
T 1fuj_A          169 AGICFGDSGGPLIC-DGIIQGIDSFV  193 (221)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred             CCCCCCCCCCeeEE-CCEEeEEEEEe
Confidence            45678999999996 78999998754

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=90.86  E-value=0.42  Score=36.67  Aligned_cols=46  Identities=26%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ....|+|||||+- +|.++||.+....     ...+...-+...+..+++..
T Consensus       181 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  231 (235)
T 1ton_A          181 DTCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM  231 (235)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             cCCCCCCccccEE-CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            4568999999996 7899999997632     12455555655555555443

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=90.76  E-value=0.17  Score=38.77  Aligned_cols=25  Identities=40%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+. +|+++||.+...
T Consensus       170 ~~C~GDSGgPL~~-~~~l~Gi~S~g~  194 (222)
T 1hj8_A          170 DSCQGDSGGPVVC-NGELQGVVSWGY  194 (222)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred             ccCCCCcccceEE-CCEEEEEEeecC
Confidence            4568999999995 789999988654

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=90.61  E-value=0.5  Score=36.28  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee-cc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK-VT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~-~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+- +|.++||.+.. ..    ...+...-+.....-+++.
T Consensus       183 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  232 (237)
T 1ao5_A          183 DTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDT  232 (237)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHH
T ss_pred             CCCCCCCcceEEE-CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHH
Confidence            4568999999996 78999999977 32    1245556665555555443

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=90.51  E-value=0.19  Score=38.58  Aligned_cols=25  Identities=48%  Similarity=0.648  Sum_probs=20.8

Q ss_pred             cccCCCCccceEEcCCccEEEEEeee
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      .....|+|||||+. +|.++||.+..
T Consensus       173 ~~~C~GDSGgPL~~-~~~l~GI~S~g  197 (225)
T 1npm_A          173 ADTCQGDSGGPLVC-DGMLQGITSWG  197 (225)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred             CeecCCCCCchheE-CCEEEEEEEeC
Confidence            34568999999995 78999998865

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=90.39  E-value=0.43  Score=36.54  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec-c----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV-T----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~-~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+- +|+++||.+... .    ...+...-+......+++.
T Consensus       170 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  219 (224)
T 2qxi_A          170 NACNGDSGGPLVC-RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT  219 (224)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHH
T ss_pred             ccCCCCccccEEE-CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            4568999999996 789999999762 2    1234455555544444443

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=90.36  E-value=0.57  Score=31.37  Aligned_cols=26  Identities=38%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             ccCCCCccceEEcCCc---cEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDG---EVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G---~vvGi~~~~~   32 (169)
                      ..-.|+|||||+-..+   .++||.+...
T Consensus        41 ~~C~GDSGGPL~~~~~~~~~l~GIvS~g~   69 (97)
T 1yph_E           41 SSCMGDSGGPLVCKKNGAWTLVGIVSWGS   69 (97)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEECC
T ss_pred             CCCcCCCCCcEEEEeCCeEEEEEEEEeCC
Confidence            3467999999995332   7999998765

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=90.35  E-value=0.2  Score=38.46  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=20.9

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+. +|+++||.+...
T Consensus       171 ~~C~GDSGgPL~~-~~~l~GI~S~g~  195 (223)
T 3mfj_A          171 DSCQGDSGGPVVC-SGKLQGIVSWGS  195 (223)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred             CcCCCCcccceEE-CCEEEEEEEECC
Confidence            4568999999996 789999988653

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=90.10  E-value=0.41  Score=36.68  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec-c----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV-T----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~-~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+. +|.++||.+... .    ...+...-+......+++.
T Consensus       173 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  222 (227)
T 2psx_A          173 DSCQGDSGGPVVC-NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQET  222 (227)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHH
T ss_pred             ccCCCCCCcceee-CCEEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHH
Confidence            3468999999995 679999999762 2    2245555555544444443

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=89.89  E-value=0.55  Score=36.02  Aligned_cols=25  Identities=32%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ..-.|+|||||+- +|.++||.+...
T Consensus       178 ~~C~GDSGgPL~~-~~~l~GI~S~g~  202 (234)
T 1orf_A          178 DSCNGDSGSPLLC-EGVFRGVTSFGL  202 (234)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred             cCCCCCCCCeEEE-CCEEEEEEEEcC
Confidence            3567999999995 789999999775

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=89.71  E-value=0.56  Score=36.08  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+- +|.++||++...
T Consensus       184 ~~C~GDSGGPL~~-~~~l~Gi~S~g~  208 (240)
T 1mza_A          184 DSCKGDAGGPLIC-KGVFHAIVSGGH  208 (240)
T ss_dssp             CCCTTCTTCEEEE-TTEEEEEECSSC
T ss_pred             ccCCCCCCCeeEE-CCEEEEEEEECC
Confidence            4568999999996 789999998765

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=89.68  E-value=0.63  Score=35.69  Aligned_cols=45  Identities=27%  Similarity=0.426  Sum_probs=30.1

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec-c----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV-T----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~-~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ..-.|+|||||+- +|.++||.+... .    ...+...-+.....-+++.
T Consensus       184 ~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~  233 (238)
T 1spj_A          184 DTCVGDSGGPLMC-DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDT  233 (238)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             CCCCCCCCCcEEE-cCEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence            4568999999995 789999999773 2    1234455555544444443

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=89.62  E-value=0.22  Score=38.16  Aligned_cols=24  Identities=42%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ..-.|+|||||+- +|.++||.+..
T Consensus       177 ~~C~GDSGgPL~~-~~~l~Gi~S~g  200 (227)
T 1iau_A          177 TSFKGDSGGPLVC-NKVAQGIVSYG  200 (227)
T ss_dssp             BCCTTCTTSEEEE-TTEEEEEEEEE
T ss_pred             eeeecCCCchheE-eeEEEEEEeEe
Confidence            4557999999996 78999998865

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=89.58  E-value=0.22  Score=37.83  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeec
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      .....|+|||||+. +++++||.+...
T Consensus       170 ~~~C~GDsGgPl~~-~~~l~Gi~S~g~  195 (223)
T 4i8h_A          170 KDSCQGDSGGPVVC-SGKLQGIVSWGS  195 (223)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred             CccCCCCCCCcEEE-CCEEEEEEEcCC
Confidence            34567999999995 779999988654

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=89.44  E-value=0.26  Score=37.51  Aligned_cols=25  Identities=48%  Similarity=0.717  Sum_probs=20.6

Q ss_pred             cccCCCCccceEEcCCccEEEEEeee
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      .....|+|||||+. +|.++||.+..
T Consensus       166 ~~~C~GDSGgPl~~-~~~l~Gi~S~~  190 (218)
T 2z7f_E          166 AGVCFGDSGSPLVC-NGLIHGIASFV  190 (218)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEEE
T ss_pred             CeeCCCcCCCceEE-ccEEEEEEEeC
Confidence            34678999999995 78999998863

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=89.38  E-value=0.22  Score=38.09  Aligned_cols=25  Identities=48%  Similarity=0.720  Sum_probs=20.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+- +|.++||.+...
T Consensus       172 ~~C~GDSGgPL~~-~~~l~GI~S~g~  196 (222)
T 1eq9_A          172 GACHGDSGGPLVA-NGAQIGIVSFGS  196 (222)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred             eeeeCCccceEEE-CCEEEEEEEECC
Confidence            4568999999996 789999988653

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=89.05  E-value=0.26  Score=37.80  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+. +|.++||.+...
T Consensus       171 ~~C~GDsGgPL~~-~~~l~Gi~S~g~  195 (223)
T 2bdg_A          171 DSCNGDSGGPLIC-NGYLQGLVSFGK  195 (223)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred             CcCCCCCCchheE-ccEEEEEEEecC
Confidence            4568999999995 689999988653

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=88.98  E-value=0.29  Score=37.48  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ....|+|||||+. +|+++||.+..
T Consensus       170 ~~C~GDsGgPL~~-~~~l~Gi~S~g  193 (223)
T 1lo6_A          170 DSCQGDSGGPLVC-GDHLRGLVSWG  193 (223)
T ss_dssp             BCCTTTTTCEEEE-TTEEEEEEEEC
T ss_pred             eeccccCCCcEEe-CCEEEEEEeeC
Confidence            4568999999996 78999998865

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=88.58  E-value=0.17  Score=39.01  Aligned_cols=45  Identities=22%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+- +|.++||.+....     ...+...-+.....-+++.
T Consensus       183 ~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  232 (237)
T 1gvz_A          183 SICLGDSGGALIC-DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKET  232 (237)
T ss_dssp             EECGGGTTCEEEE-TTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHH
T ss_pred             ccCCCCccCcEee-CCEEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHH
Confidence            3567999999995 8999999987642     1234555555555544443

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=88.23  E-value=0.81  Score=34.95  Aligned_cols=41  Identities=29%  Similarity=0.421  Sum_probs=27.3

Q ss_pred             CCCccceEEcCCccEEEEEeeecc--CCeEEEEehhhHHHHHHh
Q psy18070         10 FGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTN   51 (169)
Q Consensus        10 ~GnSGGplvn~~G~vvGi~~~~~~--~~~~faiP~~~i~~~l~~   51 (169)
                      .|+|||||+- +|.++||.+..-.  ...+...-+......+.+
T Consensus       179 ~GDsGgPL~~-~~~l~Gi~S~gc~~~~~p~vyt~V~~y~~WI~~  221 (227)
T 1euf_A          179 SGDSGGPLVC-NGVAQGIVSYGRNDGTTPDVYTRISSFLSWIHS  221 (227)
T ss_dssp             TTCTTCEEEE-TTEEEEEEEECCTTCCSCEEEEEGGGTHHHHHH
T ss_pred             ccCCCCceEE-CCEEEEEEEEeCCCCCCCeEEEEHHHhHHHHHH
Confidence            7999999995 7899999987632  123444555544444443

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=87.97  E-value=0.33  Score=36.90  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ....|+|||||+- ++.++||.+....
T Consensus       176 ~~C~GDsGgPl~~-~~~l~Gi~S~g~~  201 (226)
T 4ag1_A          176 SAFKGDSGGPLLC-AGVAQGIVSYGRS  201 (226)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEEEECBT
T ss_pred             cCccCCCCCceEE-cCEEEEEEEECCC
Confidence            4567999999995 7899999987654

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=87.77  E-value=1.1  Score=34.37  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             ccCCCCccceEEcCCc-----cEEEEEeeecc--CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDG-----EVIGINSMKVT--AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G-----~vvGi~~~~~~--~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+-.++     .++||.+....  .+.+...-+......+++.
T Consensus       185 ~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~vyt~V~~y~~WI~~~  237 (242)
T 2qy0_B          185 DACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKE  237 (242)
T ss_dssp             BCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSSSCEEEEEGGGGHHHHHHH
T ss_pred             ccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCCCCcEEEEHHHHHHHHHHH
Confidence            4568999999996433     49999997653  2345555555555555443

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=87.74  E-value=0.89  Score=34.95  Aligned_cols=49  Identities=18%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             ccCCCCccceEEcCCc---cEEEEEeeecc----CCeEEEEehhhHHHHHHhhhhc
Q psy18070          7 MVKFGNSGGPLVNLDG---EVIGINSMKVT----AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         7 ~in~GnSGGplvn~~G---~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      ....|+|||||+-.++   .++||.+....    ...+...-+......+++....
T Consensus       173 ~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  228 (240)
T 1si5_H          173 GPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT  228 (240)
T ss_dssp             BCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSS
T ss_pred             EeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            4567999999996544   89999987653    2245566666666666655433

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=87.44  E-value=0.3  Score=37.33  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=19.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ..-.|+|||||+. +|.++||.+..
T Consensus       177 ~~C~GDsGgPL~~-~~~l~Gi~s~g  200 (228)
T 2xw9_A          177 DSCKGDAGGPLVC-GGVLEGVVTSG  200 (228)
T ss_dssp             BCCTTCTTCEEEE-TTEEEEEECCS
T ss_pred             ccCCCCCcccEEE-CCEEEEEEeec
Confidence            4557999999996 78999998754

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=86.83  E-value=0.3  Score=37.09  Aligned_cols=25  Identities=20%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|+|||||+. +++++||.+...
T Consensus       177 ~~C~GDsGgPl~~-~~~l~Gi~S~g~  201 (228)
T 3h7o_A          177 SLESGDAGDPTVQ-QDTLVGVAAYFP  201 (228)
T ss_dssp             CCCGGGTTCEEEE-TTEEEEEECCCT
T ss_pred             cCCCCCCCCccee-cCeEEEEEeecC
Confidence            4567999999996 789999988653

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=86.30  E-value=1  Score=34.89  Aligned_cols=49  Identities=20%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             ccCCCCccceEEcC-Ccc--EEEEEeeecc----CCeEEEEehhhHHHHHHhhhhc
Q psy18070          7 MVKFGNSGGPLVNL-DGE--VIGINSMKVT----AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         7 ~in~GnSGGplvn~-~G~--vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      ....|+|||||+-. +|+  ++||.+....    ...+...-+......+.+..+.
T Consensus       185 ~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  240 (250)
T 1aut_C          185 DACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRD  240 (250)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC-
T ss_pred             CCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhhc
Confidence            45689999999953 464  9999987653    2245556666655555554433

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=85.75  E-value=1.3  Score=33.91  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             ccCCCCccceEEcCC---c--cEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLD---G--EVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~---G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+-.+   |  .++||.+....    ...+...-+...+..+++.
T Consensus       199 ~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  253 (259)
T 3rm2_H          199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV  253 (259)
T ss_dssp             BCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHH
T ss_pred             cccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence            567899999999543   2  69999997753    1235555555544444443

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=85.63  E-value=1.3  Score=33.84  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             ccCCCCccceEEcC---Cc--cEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNL---DG--EVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~---~G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+-.   +|  .++||.+....    ...+....+...+..+++.
T Consensus       192 ~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  246 (251)
T 3gov_B          192 DACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV  246 (251)
T ss_dssp             BCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHH
T ss_pred             ccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHH
Confidence            45689999999964   34  69999997753    1245556665555555443

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=85.04  E-value=0.73  Score=35.19  Aligned_cols=26  Identities=38%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             ccCCCCccceEE--cCCcc--EEEEEeeec
Q psy18070          7 MVKFGNSGGPLV--NLDGE--VIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplv--n~~G~--vvGi~~~~~   32 (169)
                      ....|+|||||+  +.+|+  ++||.+...
T Consensus       185 ~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~  214 (241)
T 3ncl_A          185 DSCQGDSGGPLSSVEADGRIFQAGVVSWGD  214 (241)
T ss_dssp             BCCTTCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred             ccCCCcCCCCEEEEcCCCcEEEEEEEEECC
Confidence            456899999998  34565  889988653

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=84.61  E-value=1.6  Score=33.52  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             ccCCCCccceEEcCC-c--cEEEEEeeecc----CCeEEEEehhhHHHHHHhhh
Q psy18070          7 MVKFGNSGGPLVNLD-G--EVIGINSMKVT----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         7 ~in~GnSGGplvn~~-G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ....|+|||||+-.. |  .++||.+....    ...+...-+......+.+..
T Consensus       182 ~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~  235 (241)
T 2any_A          182 DACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT  235 (241)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             ccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence            456899999999653 4  69999997653    22455555655555555443

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=84.09  E-value=0.59  Score=35.76  Aligned_cols=26  Identities=42%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             ccCCCCccceEEcCCc----cEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDG----EVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G----~vvGi~~~~~   32 (169)
                      ....|+|||||+..++    .++||.+...
T Consensus       176 ~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~  205 (232)
T 2oq5_A          176 DACQGDSGGPLVSSDARDIWYLAGIVSWGD  205 (232)
T ss_dssp             BCCTTCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred             ccCCCCCCCcEEEECCCCCEEEEEEEEeCC
Confidence            4568999999996443    6999988653

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=84.04  E-value=0.76  Score=34.79  Aligned_cols=26  Identities=35%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             ccCCCCccceEEcCC--c--cEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLD--G--EVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~--G--~vvGi~~~~~   32 (169)
                      ....|+|||||+-.+  |  .++||.+...
T Consensus       167 ~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~  196 (224)
T 3beu_A          167 DTCQGDSGGPMFRKDNADEWVQVGIVSWGE  196 (224)
T ss_dssp             BCCTTCTTCEEEEECTTSCEEEEEEEEEES
T ss_pred             cCCCCcCCCeeEEecCCCCEEEEEEeccCC
Confidence            456899999999654  2  6899998764

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=83.95  E-value=0.59  Score=35.90  Aligned_cols=25  Identities=44%  Similarity=0.642  Sum_probs=20.0

Q ss_pred             ccCCCCccceEEcCCc--cEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDG--EVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G--~vvGi~~~~   31 (169)
                      ....|+|||||+-.+|  .++||.+..
T Consensus       185 ~~C~GDSGgPL~~~~~~~~l~Gi~S~~  211 (241)
T 1m9u_A          185 GACNGDSGGPLNCPDGGTRVVGVTSWV  211 (241)
T ss_dssp             BCCTTCTTCEEEEESSSEEEEEEEEEC
T ss_pred             eeecCcCCccEEEeCCCEEEEEEEEEe
Confidence            4567999999997545  899998863

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=83.74  E-value=1.1  Score=34.43  Aligned_cols=46  Identities=15%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ccCCCCccceEEcCCc---cEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLDG---EVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~G---~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+-..+   .++||.+....    ...+...-+......+++.
T Consensus       172 ~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  224 (234)
T 2asu_B          172 GACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKV  224 (234)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHH
T ss_pred             eeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            3567999999996443   89999987653    2245555555555555443

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=83.63  E-value=1.5  Score=33.76  Aligned_cols=46  Identities=22%  Similarity=0.165  Sum_probs=29.4

Q ss_pred             ccCCCCccceEEcCC-c--cEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          7 MVKFGNSGGPLVNLD-G--EVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         7 ~in~GnSGGplvn~~-G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      ....|+|||||+-.. |  .++||.+....    ...+...-+...+..+++.
T Consensus       188 ~~C~GDsGgPl~~~~~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~  240 (261)
T 3gyl_B          188 DACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSK  240 (261)
T ss_dssp             BCCTTTTTCEEEEEETTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             ccCCCCCCCeeEEEeCCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHH
Confidence            456899999999654 4  59999987643    2234455555444444443

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=83.57  E-value=0.63  Score=35.92  Aligned_cols=26  Identities=42%  Similarity=0.561  Sum_probs=20.4

Q ss_pred             ccCCCCccceEEcC--Cc--cEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNL--DG--EVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~--~G--~vvGi~~~~~   32 (169)
                      ....|+|||||+-.  +|  .++||.+...
T Consensus       182 ~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~  211 (241)
T 1bru_P          182 SSCNGDSGGPLNCQGANGQWQVHGIVSFGS  211 (241)
T ss_dssp             BCCTTCTTCEEEEECTTSCEEEEEEEEECB
T ss_pred             ccCCCCCCCcEEEECCCCCEEEEEEEEEcC
Confidence            35679999999954  46  8999988754

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=83.53  E-value=1.5  Score=33.58  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             ccCCCCccceEEcC-Cc--cEEEEEeeecc----CCeEEEEehhhHHHHHHhhhh
Q psy18070          7 MVKFGNSGGPLVNL-DG--EVIGINSMKVT----AGISFAIPIDYAIEFLTNYKR   54 (169)
Q Consensus         7 ~in~GnSGGplvn~-~G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~   54 (169)
                      ....|+|||||+.. +|  .++||.+....    ...+...-+......+++..+
T Consensus       179 ~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  233 (241)
T 2jkh_A          179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (241)
T ss_dssp             BCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             ccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhc
Confidence            45689999999964 34  59999997653    224556666666666655543

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=82.38  E-value=0.76  Score=35.53  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             ccCCCCccceEEcCCc--cEEEEEeeec-c----CCeEEEEehhhHHHHHHhhhh
Q psy18070          7 MVKFGNSGGPLVNLDG--EVIGINSMKV-T----AGISFAIPIDYAIEFLTNYKR   54 (169)
Q Consensus         7 ~in~GnSGGplvn~~G--~vvGi~~~~~-~----~~~~faiP~~~i~~~l~~l~~   54 (169)
                      ..-.|+|||||+- ++  .++||.+... .    ...+...-+.....-+++...
T Consensus       176 ~~C~GDSGgPL~~-~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  229 (240)
T 2zgc_A          176 APCKGDSGGPLVC-GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG  229 (240)
T ss_dssp             BCCTTCTTCEEEE-TTTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHC
T ss_pred             ccCCCCccCeeEE-CCCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence            4568999999995 45  8999999762 2    123445555555555555443

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=81.86  E-value=2.2  Score=32.77  Aligned_cols=46  Identities=26%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             cCCCCccceEEcC-Cc--cEEEEEeeecc----CCeEEEEehhhHHHHHHhhh
Q psy18070          8 VKFGNSGGPLVNL-DG--EVIGINSMKVT----AGISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         8 in~GnSGGplvn~-~G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~   53 (169)
                      ...|+|||||+-. +|  .++||.+....    ...+...-+......+++..
T Consensus       189 ~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  241 (245)
T 2f9n_A          189 SCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV  241 (245)
T ss_dssp             CCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHS
T ss_pred             cCCCCCCCceEEEECCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence            4679999999964 46  58999987653    22355555555555554443

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=81.78  E-value=0.93  Score=34.62  Aligned_cols=27  Identities=41%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             cccCCCCccceEEcCC--c--cEEEEEeeec
Q psy18070          6 IMVKFGNSGGPLVNLD--G--EVIGINSMKV   32 (169)
Q Consensus         6 a~in~GnSGGplvn~~--G--~vvGi~~~~~   32 (169)
                      ...-.|+|||||+-.+  |  .++||.+...
T Consensus       181 ~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~  211 (238)
T 1ym0_A          181 RDSCQGDSGGPLSVKDGSGIFSLVGIVSWGI  211 (238)
T ss_dssp             CBCCTTTTTCEEEEECTTCCEEEEEEEEECS
T ss_pred             CccCCCccCCeeEEECCCCCEEEEEEEeECC
Confidence            4567899999998654  4  6999988754

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=81.67  E-value=0.81  Score=35.15  Aligned_cols=26  Identities=42%  Similarity=0.570  Sum_probs=20.2

Q ss_pred             ccCCCCccceEEcC--Cc--cEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNL--DG--EVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~--~G--~vvGi~~~~~   32 (169)
                      ....|+|||||+-.  +|  .++||.+...
T Consensus       181 ~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~  210 (240)
T 1fon_A          181 SGCNGDSGGPLNCPAADGSWQVHGVTSFVS  210 (240)
T ss_dssp             CSTTSCTTCEEEEECSSSCEEEEEEEEECC
T ss_pred             cccCCCCCCeEEeEcCCCCEEEEEEEEEcC
Confidence            34679999999954  56  8999988653

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=81.59  E-value=1.2  Score=34.09  Aligned_cols=25  Identities=40%  Similarity=0.461  Sum_probs=19.6

Q ss_pred             ccCCCCccceEEcCCc---cEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDG---EVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G---~vvGi~~~~   31 (169)
                      ....|+|||||+-.++   .++||.+..
T Consensus       183 ~~C~GDSGgPL~~~~~~~~~l~Gi~S~g  210 (237)
T 2f91_A          183 DSCQGDSGGPLAASDTGSTYLAGIVSWG  210 (237)
T ss_dssp             BCCTTCTTCEEEECTTSSCEEEEEEEEE
T ss_pred             CCCCCcCCCCeEEecCCCEEEEEEEEec
Confidence            4568999999996543   799998865

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=81.58  E-value=2.3  Score=32.64  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             ccCCCCccceEEcC-Cc--cEEEEEeeecc----CCeEEEEehhhHHHHHHhhhh
Q psy18070          7 MVKFGNSGGPLVNL-DG--EVIGINSMKVT----AGISFAIPIDYAIEFLTNYKR   54 (169)
Q Consensus         7 ~in~GnSGGplvn~-~G--~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~   54 (169)
                      ....|+|||||+-. +|  .++||.+....    ...+...-+......+++..+
T Consensus       185 ~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  239 (248)
T 2r0l_A          185 DACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR  239 (248)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC
T ss_pred             cCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            45689999999965 35  59999997653    224555666665555555443

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=81.04  E-value=0.89  Score=34.97  Aligned_cols=25  Identities=44%  Similarity=0.643  Sum_probs=19.8

Q ss_pred             ccCCCCccceEEcC-Cc--cEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNL-DG--EVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~-~G--~vvGi~~~~   31 (169)
                      ....|+|||||+-. +|  .++||.+..
T Consensus       182 ~~C~GDSGgPL~~~~~g~~~l~Gi~S~g  209 (240)
T 1gvk_B          182 SGCQGDSGGPLHCLVNGQYAVHGVTSFV  209 (240)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCcCceEEEECCcEEEEEEEEEe
Confidence            34689999999853 57  899998865

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=80.37  E-value=0.97  Score=34.60  Aligned_cols=25  Identities=40%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             ccCCCCccceEEcC-Cc--cEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNL-DG--EVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~-~G--~vvGi~~~~   31 (169)
                      ....|+|||||+-. +|  .++||.+..
T Consensus       181 ~~C~GDSGgPL~~~~~g~~~l~Gi~S~g  208 (236)
T 1elt_A          181 SGCNGDSGGPLNCQVNGSYYVHGVTSFV  208 (236)
T ss_dssp             BCCTTCTTCEEEEEETTEEEEEEEEEEC
T ss_pred             ccCCCCCCCeeEEEECCEEEEEEEEEEe
Confidence            34689999999964 56  799998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1lcya2	205	b.47.1.1 (A:6-210) Mitochondrial serine protease H	6e-17
d1ky9a2	249	b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata	2e-13
d1l1ja_	228	b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic	2e-13
d2z9ia2	221	b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu	7e-10
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	2e-09
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	3e-08
d2sgaa_	181	b.47.1.1 (A:) Protease A {Streptomyces griseus, st	2e-07
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-07
d2qaaa1	185	b.47.1.1 (A:16-242) Protease B {Streptomyces grise	1e-06
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	1e-06
d2qf3a1	210	b.47.1.1 (A:43-252) Stress sensor protease DegS, c	2e-06
d1lvmb_	219	b.47.1.3 (B:) TEV protease (nucleat inclusion prot	1e-05
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	1e-05
d2h5ca1	198	b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobac	4e-04
d2bhga1	199	b.47.1.4 (A:7-205) 3C cysteine protease (picornain	8e-04

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 6e-17
 Identities = 34/46 (73%), Positives = 38/46 (82%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFL 49
           T   + FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D   EFL
Sbjct: 159 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFL 204

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 55
           T   +  GN+GG LVNL+GE+IGIN+  +       GI FAIP +      +     
Sbjct: 191 TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEY 247

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.4 bits (153), Expect = 2e-13
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFL 49
           T   +  GNSGGPL+N+ GEVIGIN+  V       + FAIPI+   +FL
Sbjct: 174 TDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFLTN 51
           T   +  GNSGG LVN++ +++G+NS   T             G+ FAIP+D A      
Sbjct: 155 TDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADE 214

Query: 52  YKRK 55
               
Sbjct: 215 LIST 218

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPI-DYAIEFL 49
           GNSG  + N +GE++GI+S KV+       I++ + I +Y    +
Sbjct: 193 GNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRII 237

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNYKRKDIDRTITHKK 65
           GNSG  + NL GE+IGI+S K        G+ F   I         +     +      K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLKKRAK 243

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 181

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIE 47
           T +  + G+SGG L       +G+ S       T G +F  P+  A+ 
Sbjct: 128 TNVCAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALS 174

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 11  GNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI-EFLTN 51
           GNSG P+ N   EVIGI+   V    + A+ I+  +  FL  
Sbjct: 167 GNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQ 208

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 185

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIE 47
           T +  + G+SGGPL +     IG+ S         G +F  P+  A+ 
Sbjct: 132 TNVCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEALS 178

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 64  KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYF 109
           ++YIG+ MLTL+  ++ +L+       D+ HGVLI +V+  SPA+ 
Sbjct: 1   RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHR 46

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Length = 210

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKVTA--------GISFAIPIDYAIEFLTNYKRK 55
           T   +  GNSGG LVN  GE++GIN++            GI FAIP   A + +    R 
Sbjct: 150 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 209

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Length = 219

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 6   IMVKFGNSGGPLVNL-DGEVIGINSMKVTA---GISFAIPIDYAIEFLTNYKRKDIDR 59
           I  K G  G PLV+  DG ++GI+S            ++P ++ +E LTN + +    
Sbjct: 142 IQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNF-MELLTNQEAQQWVS 198

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 4   TGIMVKFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAI 46
           T      G+SGG         +GI+S       TAG +   P+  A+
Sbjct: 134 TTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Length = 198

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 1   MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTA------GISFAIPIDYAI 46
           ++     +  G+SGG  +   G+  G+ S           GI  +       
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFE 182

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Length = 199

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 11  GNSGGPLV---NLDGEVIGINSMKVTAGISFAIPID 43
           G +GG ++     D  ++G +S     G+ +   + 
Sbjct: 155 GYAGGAVLAKDGADTFIVGTHSA-GGNGVGYCSCVS 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	99.69
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.66
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.55
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.54
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.44
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.19
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	99.15
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.05
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.95
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	98.88
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.82
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.7
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.69
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.64
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.63
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.59
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.57
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	98.52
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.51
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.51
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.47
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.46
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.45
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.45
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.45
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.43
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.42
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.42
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.41
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.41
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.4
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.4
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.39
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.38
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.38
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.37
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.36
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	98.35
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.33
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.33
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	98.33
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.32
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.32
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.29
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.27
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.27
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.27
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.24
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.22
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.21
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.2
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.18
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.16
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.16
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.13
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.1
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.09
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.08
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.08
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.08
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.07
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.05
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	97.97
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	97.95
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.92
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	97.84
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	97.83
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	97.8
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	97.78
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	97.73
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.73
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	97.72
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	97.72
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	97.63
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	97.4
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	96.27
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	94.94
d1ep5a_	156	Viral capsid protein {Venezuelan equine encephalit	94.39
d1wyka_	152	Viral capsid protein {Sindbis virus [TaxId: 11034]	94.17
d1vcpa_	149	Viral capsid protein {Semliki forest virus [TaxId:	93.84
d1mbma_	198	NSP4 proteinase {Equine arteritis virus, EAV [TaxI	91.33
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	89.56
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	87.43
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	86.54
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	84.55
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	84.28
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	84.27
g1dy9.1	187	NS3 protease {Human hepatitis C virus (HCV), diffe	83.92
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	83.81
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	83.52
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	83.1
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	81.4
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	80.84
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	80.66
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	80.29

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=8.9e-18  Score=134.51  Aligned_cols=56  Identities=38%  Similarity=0.617  Sum_probs=52.6

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      +|||||++|||||||||+|.+||||||+++..+     +|++||||++.+++++++|+++|
T Consensus       188 ~iqtda~i~~GnSGGPl~n~~G~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~~~G  248 (249)
T d1ky9a2         188 FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYG  248 (249)
T ss_dssp             CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHHHS
T ss_pred             eEEEeeeecCCCCCceEECCCCEEEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHHHhC
Confidence            699999999999999999999999999999864     57999999999999999999876

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.2e-16  Score=107.72  Aligned_cols=95  Identities=29%  Similarity=0.379  Sum_probs=79.3

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhc
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSI  143 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~  143 (169)
                      |+|||+++.+++++++++++......+....|++|.+|.++|||+      +|||++||+|+++|+.++.+..++... +
T Consensus         1 r~~lGi~~~~lt~~~~~~l~~~~~~~~~~~~Gv~V~~V~~~spA~------~aGl~~GDiI~~ing~~V~s~~dl~~~-l   73 (100)
T d1lcya1           1 RRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH------RAGLRPGDVILAIGEQMVQNAEDVYEA-V   73 (100)
T ss_dssp             CEECCEEEEECCHHHHHHHTTSCTTSCCCSSCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECCSHHHHHHH-H
T ss_pred             CCEeEEEEEeCCHHHHHHhCCCCCCCCcCCCcEEEEEECCCchHh------hcCCCCCcEEEEECCEEcCCHHHHHHH-h
Confidence            589999999999999999999776666777899999999999999      999999999999999998887776544 3


Q ss_pred             CCCCeeEEEEEEe----eEEeecccc
Q psy18070        144 NHPSITCHILLRL----YLLVCSELT  165 (169)
Q Consensus       144 ~~~~~~~~~i~r~----~~~v~~~~~  165 (169)
                      +....+.+.++|+    ++.|..+.+
T Consensus        74 ~~g~~v~l~v~R~g~~~~~~v~pe~~   99 (100)
T d1lcya1          74 RTQSQLAVQIRRGRETLTLYVTPEVT   99 (100)
T ss_dssp             TTCSSEEEEEEETTEEEEEEECCEEC
T ss_pred             cCCCEEEEEEEECCEEEEEEEEeecc
Confidence            5566779999985    444444443

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2.8e-15  Score=116.48  Aligned_cols=56  Identities=36%  Similarity=0.580  Sum_probs=51.2

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc------------CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT------------AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~------------~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      ++|+|++++||||||||+|.+|+||||+++...            .+++||||++.+++++++|++.|
T Consensus       152 ~i~~~~~i~~G~SGGPv~n~~G~vVGI~~~~~~~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~~~G  219 (221)
T d2z9ia2         152 AIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG  219 (221)
T ss_dssp             EEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS
T ss_pred             eEEEeecccCCCCCCccCcCCCEEEEEEEEEecccccccccccCccCeEEEEEHHHHHHHHHHHHHhC
Confidence            489999999999999999999999999987653            35899999999999999999887

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=6.9e-16  Score=106.32  Aligned_cols=86  Identities=23%  Similarity=0.149  Sum_probs=70.2

Q ss_pred             eecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhh
Q psy18070         62 THKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVW  141 (169)
Q Consensus        62 ~~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~  141 (169)
                      +.|+|||++++++++++++.++++      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++...
T Consensus         1 V~Rg~lGi~~~~l~~~~~~~~gl~------~~~Gv~V~~V~~~spA~------~aGl~~gDvI~~i~g~~v~~~~~l~~~   68 (94)
T d1ky9a1           1 VKRGELGIMGTELNSELAKAMKVD------AQRGAFVSQVLPNSSAA------KAGIKAGDVITSLNGKPISSFAALRAQ   68 (94)
T ss_dssp             CCBCCCCCSCCCTTSHHHHTSCCT------TCCSEECCCCTTCSSST------TTTCCTTCEECBSSSSBCCSSHHHHHH
T ss_pred             CeeeeeeEEEEECCHHHHHHcCCC------CCCCcEEEECCCChhHH------HhCCCcccEEEEECCEEeCCHHHHHHH
Confidence            468999999999999999999884      23799999999999999      999999999999888877776655433


Q ss_pred             --hcCCCCeeEEEEEEeeEE
Q psy18070        142 --SINHPSITCHILLRLYLL  159 (169)
Q Consensus       142 --~~~~~~~~~~~i~r~~~~  159 (169)
                        ..+....+.+.++|+=-.
T Consensus        69 l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          69 VGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             TTSSBTTCCCEEEEESSSCE
T ss_pred             HHhCCCCCEEEEEEEECCEE
Confidence              333345679999986433

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=7.6e-15  Score=101.94  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             cceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhh--hh
Q psy18070         64 KKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLV--VW  141 (169)
Q Consensus        64 ~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~--~~  141 (169)
                      |+|||++++++++++++.++++.      ..|++|.+|.++|||+      ++||++||+|+++++.++.+..++.  +.
T Consensus         2 Rg~LGv~~~~l~~~~~~~~gl~~------~~Gv~V~~V~~~spA~------~aGl~~GDiI~~ing~~v~~~~~l~~~l~   69 (99)
T d1sota1           2 RGYIGIGGREIAPLHAQGGGIDQ------LQGIVVNEVSPDGPAA------NAGIQVNDLIISVDNKPAISALETMDQVA   69 (99)
T ss_dssp             CEECCCCCC----------------------CEECCCCCSSSTTT------SSSCCTTCEECBSSSSBCCCSHHHHHHHH
T ss_pred             CceeEEEEEECCHHHHHHcCCCC------CCccEEEEecCCCCHH------HcCCCcceEEEEECCEecccHHHHHHHHH
Confidence            78999999999999999999852      3799999999999999      9999999999998888777665544  33


Q ss_pred             hcCCCCeeEEEEEEe
Q psy18070        142 SINHPSITCHILLRL  156 (169)
Q Consensus       142 ~~~~~~~~~~~i~r~  156 (169)
                      ..+....+.+.++|+
T Consensus        70 ~~~~g~~v~l~v~R~   84 (99)
T d1sota1          70 EIRPGSVIPVVVMRD   84 (99)
T ss_dssp             HSCTTCEEEECC---
T ss_pred             cCCCCCEEEEEEEEC
Confidence            445556779999885

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=4.2e-11  Score=80.74  Aligned_cols=72  Identities=14%  Similarity=0.028  Sum_probs=56.3

Q ss_pred             ecceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhh
Q psy18070         63 HKKYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWS  142 (169)
Q Consensus        63 ~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~  142 (169)
                      .|++||+.+..-                ....|++|.+|.|+|||+      ++||++||+|+++++..+.+..++....
T Consensus         1 s~~~LGv~~~~~----------------~~~~Gv~V~~V~~~spA~------~aGl~~GD~I~~ing~~i~~~~~~~~~i   58 (88)
T d2z9ia1           1 SHASLGVQVTND----------------KDTLGAKIVEVVAGGAAA------NAGVPKGVVVTKVDDRPINSADALVAAV   58 (88)
T ss_dssp             CCEECCEEEECC----------------C-CCSEEEEEECTTSTTG------GGTCCTTCEEEEETTEECCSHHHHHHHH
T ss_pred             CCCEEeEEEEec----------------CCCCcEEEEEECCCCHHH------HcCCCCCCEEEEeCCCcCCcHHHHHHHH
Confidence            378999998753                223699999999999999      9999999999999999887765554432


Q ss_pred             --cCCCCeeEEEEEEe
Q psy18070        143 --INHPSITCHILLRL  156 (169)
Q Consensus       143 --~~~~~~~~~~i~r~  156 (169)
                        .+....+.+.+.|.
T Consensus        59 ~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1          59 RSKAPGATVALTFQDP   74 (88)
T ss_dssp             HTSCTTCEEEEEEEET
T ss_pred             HhCCCCCEEEEEEEEC
Confidence              23345679999883

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=99.15  E-value=3e-11  Score=94.38  Aligned_cols=54  Identities=30%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             CEeeccccCCCCccceEEcC-CccEEEEEeeecc-CCeEEEEeh-hhHHHHHHhhhh
Q psy18070          1 MSLTGIMVKFGNSGGPLVNL-DGEVIGINSMKVT-AGISFAIPI-DYAIEFLTNYKR   54 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~-~G~vvGi~~~~~~-~~~~faiP~-~~i~~~l~~l~~   54 (169)
                      ++|+++++|||||||||||. +|+||||+++... .+.+|++|+ +...+++.....
T Consensus       137 ~~~~~~~t~~GnSGGPlvd~~dG~VVGIhs~~~~~~~~n~~~~i~~~~~~~l~~~~~  193 (219)
T d1lvmb_         137 FWKHWIQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEA  193 (219)
T ss_dssp             EEEECBCCCTTCTTCEEEETTTCCEEEEEEEEETTSSSEEEEECCTTHHHHHHCGGG
T ss_pred             eEEEEEEcCCCCCCCceEEcCCCEEEEEEEeeecccceEEEEecCHHHHHHHhhccc
Confidence            47999999999999999996 6999999999864 456665555 224567766544

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.8e-11  Score=81.09  Aligned_cols=59  Identities=20%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             CCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcCCCCeeEEEEEEe
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ...|++|.+|.++|||+      ++||++||+|+++++.++.+..++.....+.+..+.+.+.|.
T Consensus        23 ~~~Gv~V~~V~~~spA~------~aGl~~GDvI~~ing~~v~~~~~~~~~l~~~~~~v~l~v~R~   81 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAA------QIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRG   81 (88)
T ss_dssp             TTSCCCBCCCCSSCTTG------GGTCCSSCEEEEETTEECSSHHHHHHHTTTCCSCCCEEEESS
T ss_pred             CCCeEEEEEECCCCHHH------HcCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            34799999999999999      999999999999999998877766655555566678888884

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.5e-10  Score=90.34  Aligned_cols=33  Identities=52%  Similarity=0.822  Sum_probs=30.4

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ++||||+++||||||||+|.+|+||||+++..+
T Consensus       171 ~~~~da~i~~G~SGGPl~n~~G~VIGI~~~~~~  203 (228)
T d1l1ja_         171 LIQTDAAINPGNSGGPLLNIHGEVIGINTAIVN  203 (228)
T ss_dssp             EEEESSCCCTTTTTSEEECSSSEEEEEECCCSC
T ss_pred             eeEEecccCCCCCCCcEECCCCEEEEEEEEEec
Confidence            489999999999999999999999999987654

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5.5e-10  Score=85.56  Aligned_cols=33  Identities=42%  Similarity=0.674  Sum_probs=30.4

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ++|+|++++||||||||+|.+||||||+++...
T Consensus       147 ~i~~~a~i~~G~SGGPv~n~~G~vVGI~~~~~~  179 (210)
T d2qf3a1         147 FLQTDASINHGNSGGALVNSLGELMGINTLSFD  179 (210)
T ss_dssp             CEEECSCCCTTCTTCEEEETTCCEEEEEEEEC-
T ss_pred             EEEEeeeEEeccCCCceEeecCEEEEEEEEEee
Confidence            589999999999999999999999999998764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.82  E-value=9.3e-09  Score=69.57  Aligned_cols=58  Identities=16%  Similarity=-0.013  Sum_probs=44.8

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhc--CCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSI--NHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~--~~~~~~~~~i~r~  156 (169)
                      ..+++|.+|.++|||+      +|||++||+|+++|+.++... .+.+...+  +....+.+.+.|.
T Consensus        18 ~~~v~V~~v~~gsPA~------~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~   78 (92)
T d1fc6a3          18 GKDVVVLTPAPGGPAE------KAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP   78 (92)
T ss_dssp             SSCEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             CceEEEEEecCCCChh------HHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEEC
Confidence            3689999999999999      999999999999999886632 23333333  3445679999884

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=2.8e-08  Score=68.60  Aligned_cols=62  Identities=13%  Similarity=-0.029  Sum_probs=50.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhhhhcC-C-CCeeEEEEEEeeEEeec
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVVWSIN-H-PSITCHILLRLYLLVCS  162 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~~~~~-~-~~~~~~~i~r~~~~v~~  162 (169)
                      .||+|.+|.++|||+      ++ |++||+|+++|+.++.+..++...... + ...+.+.+.|+-..+..
T Consensus         3 ~Gv~V~~V~~~sPA~------~~-L~~GD~I~~ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l   66 (103)
T d2hgaa1           3 DGVQIDSVVPGSPAS------KV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTFHLKT   66 (103)
T ss_dssp             CCEEEEEECSSSGGG------GT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEETTEEEEEEC
T ss_pred             CcEEEEEECCCChHH------hc-CCCCCEEEEECCEEcCCHHHHHHHHhhCCCCCEEEEEEEECCEEEEE
Confidence            699999999999999      75 999999999999998887776655333 3 45679999998665544

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.5e-08  Score=66.45  Aligned_cols=57  Identities=19%  Similarity=0.071  Sum_probs=46.7

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++||++||.|+++|+..+...  .+........+..+.+.++|.
T Consensus        18 ~~~~V~~V~~gspA~------~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          18 SPVRVQAVDSGGPAE------RAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             SSCEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            579999999999999      999999999999999987766  444444455667778888874

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.4e-08  Score=67.30  Aligned_cols=59  Identities=20%  Similarity=0.104  Sum_probs=46.0

Q ss_pred             CCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ...|++|.+|.++|||+      ++||++||.|+++|+....+.  .+......+.+..+.+.+.|.
T Consensus        37 ~~~~i~V~~V~~gg~A~------~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          37 DDEGIFISRVSEEGPAA------RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             TCCSEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhH------hhcccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEEC
Confidence            34689999999999999      999999999999999887665  332333334566778888873

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.7e-08  Score=64.98  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecc
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYT  134 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~  134 (169)
                      ..+|+++...                  ..|++|.+|.++|||+      ++||++||.|+++|+..+..
T Consensus        14 ~~lG~~l~~~------------------~~g~~V~~v~~gspA~------~aGL~~GD~Il~Vng~~v~~   59 (85)
T d1w9ea1          14 GKIGLRLKSI------------------DNGIFVQLVQANSPAS------LVGLRFGDQVLQINGENCAG   59 (85)
T ss_dssp             SCCSEEEEEE------------------TTEEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTT
T ss_pred             CCEeEEEEeC------------------CCCEEEEEECCCCHHH------HcCCCCccEEEEECCEEeCC
Confidence            4589888743                  1599999999999999      99999999999999998765

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=4e-08  Score=66.31  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++||++||.|+++|+..+...  .+......+.+..+.+.+.|.
T Consensus        32 ~g~~V~~V~~~g~A~------~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          32 KGVYVKNIRPAGPGD------LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCChhH------hCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
Confidence            699999999999999      999999999999998876544  333333344566778888774

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.4e-08  Score=64.47  Aligned_cols=56  Identities=16%  Similarity=0.039  Sum_probs=43.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++||++||.|+++|++.+....  +........+..+.+.+.|
T Consensus        27 ~~~~V~~V~~g~~A~------~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~   84 (91)
T d1g9oa_          27 LGQYIRLVEPGSPAE------KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD   84 (91)
T ss_dssp             SSEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEC
T ss_pred             CCEEEEEEcCCCHHH------HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEC
Confidence            689999999999999      9999999999999999876553  3333333445566666654

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=6.8e-08  Score=66.29  Aligned_cols=60  Identities=8%  Similarity=-0.061  Sum_probs=46.2

Q ss_pred             CCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         91 DLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        91 ~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ....+++|..|.++|||+      ++||++||.|+++|+..+.+-  .+......+.+..+.+.+++.
T Consensus        40 ~~~~~~~I~~v~~g~~A~------~aGL~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          40 AFPALQYLESVDEGGVAW------RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             SCCSSEEEEEECTTSHHH------HTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCHHH------HcCCCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            445689999999999999      999999999999999987775  333333334456677777763

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=8.1e-08  Score=72.43  Aligned_cols=54  Identities=30%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeeccCCeEEEEehh-hHHHHHHhhhh
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPID-YAIEFLTNYKR   54 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~~-~i~~~l~~l~~   54 (169)
                      ++++|+.+.+|+||||++|.+|+||||++.......+.++++. .++.++++-++
T Consensus       157 ~l~~~~~~~~G~SGgPv~~~~g~vVGI~s~g~~~~~~~~v~~~~~~~~~i~~~i~  211 (216)
T d2o8la1         157 AMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIE  211 (216)
T ss_dssp             EEEESCCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECCHHHHHHHHHHCT
T ss_pred             eEEEecCcCCCCCCCcEECCCCEEEEEEeeecCCCCcceEecCHHHHHHHHHhhh
Confidence            3789999999999999999999999999988777778888866 46677766543

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.51  E-value=2e-07  Score=62.92  Aligned_cols=57  Identities=11%  Similarity=-0.098  Sum_probs=45.9

Q ss_pred             CcEEEEEEccC--------CcccccccccccCC-CCCcEEEecCceeecchhhhhhhhc-CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYN--------SPAYFIKFRTSAGI-KPTSSRLLGECLAQYTTSKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~--------spA~~~~~~~~aGL-~~GDvI~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .++.|.+|.++        |||+      ++|| |+||+|+++|+.++....+...+.. .....+.+++.|.
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~------~aGl~k~GD~I~~IdG~~v~~~~~~~~~l~g~~G~~V~L~i~R~   78 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIF------EYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGK   78 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGG------GGTCCCTTCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEEECS
T ss_pred             CeEEEEEEecCCCCCcccCChhH------hcCCCCCCCEEEEECCEeecCcceeEEEEecCCCCEEEEEEEeC
Confidence            68999999887        9999      9999 8999999999998877655554433 3455678988883

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-07  Score=64.02  Aligned_cols=58  Identities=10%  Similarity=0.054  Sum_probs=45.6

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|+......  .+........+..+.+.+.|+
T Consensus        30 ~~gi~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~   90 (92)
T d1t2ma1          30 KLGIYVKSVVKGGAAD------VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ   90 (92)
T ss_dssp             SCEEEEEEECTTSHHH------HHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             CCCEEEEEEcCCChHH------hcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3689999999999999      999 999999999999887654  333333345566778888874

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=6.8e-08  Score=66.62  Aligned_cols=56  Identities=16%  Similarity=0.076  Sum_probs=42.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh-hhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-KLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~-~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++||++||.|+++|++.+.... +.++..++....+.+.+.|
T Consensus        41 ~gi~V~~V~~~s~A~------~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~~v~l~V~~   97 (104)
T d1wi2a_          41 LGIFISKVIPDSDAH------RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRF   97 (104)
T ss_dssp             CCCEEEEECTTSHHH------HHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEEEEEEC
T ss_pred             CCEEEEEECCCChhH------hcccccCCEEEEECCEECCCCCHHHHHHHHhcCCeEEEEEEE
Confidence            689999999999999      9999999999999998876652 2233333334456666644

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=9.5e-08  Score=65.03  Aligned_cols=59  Identities=15%  Similarity=0.078  Sum_probs=44.7

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++.....  .+........+..+.+.+.|.-
T Consensus        36 ~~~i~V~~V~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          36 HGGIYVKAIIPKGAAE------SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             CCCEEEEEECSSSHHH------HHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHH------hcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeCC
Confidence            3689999999999999      999 999999999999887643  3322222234566788887753

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.8e-08  Score=63.48  Aligned_cols=57  Identities=11%  Similarity=-0.101  Sum_probs=44.1

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++||++||.|+++|+..+...  .+........+..+.+.+.|.
T Consensus        25 ~~v~V~~v~~gs~A~------~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~   83 (85)
T d1rgwa_          25 MPLTISRITPGSKAA------QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS   83 (85)
T ss_dssp             SCCBEEEECTTSHHH------HSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESC
T ss_pred             CCEEEEEecCCChHH------hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            579999999999999      999999999999998887654  333333334456678888774

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-07  Score=65.96  Aligned_cols=56  Identities=14%  Similarity=0.058  Sum_probs=42.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhcCC-CCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSINH-PSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~~~-~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++||++||.|+++|++.+... .+.+...++. ...+.+.+.|
T Consensus        42 ~gi~V~~V~~gs~A~------~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~   99 (117)
T d1uita_          42 GGIYVSKVTVGSIAH------QAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY   99 (117)
T ss_dssp             SCEEEEEECTTSHHH------HHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECC
T ss_pred             CCEEEEEEecCChHH------hCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEE
Confidence            699999999999999      999999999999999887654 2333333443 4455665544

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=8.7e-08  Score=64.58  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|+...... .+.++..+ ..+..+.+.+.|+
T Consensus        30 ~~gi~I~~V~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~   90 (93)
T d1rgra_          30 DPSIFITKIIPGGAAA------QDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR   90 (93)
T ss_dssp             CCCCCEEEECTTSHHH------HHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECS
T ss_pred             CCCEEEEEECCCChHH------hcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            4699999999999999      999 999999999998887654 22223223 3466778888875

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.45  E-value=5.3e-08  Score=72.93  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++|+|+.++||+||||++|.+|++|||++...
T Consensus       131 ~~~~~~~~~~GdSGGPv~~~~g~vvGI~sgg~  162 (198)
T d2h5ca1         131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGGN  162 (198)
T ss_dssp             EEEECSCCBTTCTTCEEECTTCBEEEEEEEEC
T ss_pred             eEEEeeeeecccccccEEcCCCEEEEEEcccc
Confidence            47999999999999999999999999998765

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=2.5e-07  Score=63.57  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh-hhhhhhc-CCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS-KLVVWSI-NHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~i~r  155 (169)
                      .|++|..|.++|||+      ++| |++||.|+++|+..+.... +.+...+ ..+..+.+.+.|
T Consensus        33 ~gv~V~~v~~gs~A~------~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~   91 (102)
T d1tp5a1          33 EGIFISFILAGGPAD------LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY   91 (102)
T ss_dssp             CCEEEEEECTTSHHH------HHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEE
T ss_pred             CCEEEEEecCCchHH------HcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            699999999999999      998 9999999999998876652 2233333 345666666655

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.1e-07  Score=63.86  Aligned_cols=69  Identities=10%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhh
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWS  142 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~  142 (169)
                      ..+|+.+..=.               +...|++|..|.++|||+      ++||++||.|+++|+......  .+.. ..
T Consensus        20 ~glG~~i~~g~---------------~~~~gi~V~~V~~gs~A~------~~gL~~GD~Il~VNg~~v~~~~~~~v~-~~   77 (101)
T d1x5na1          20 RGLGCSISSGP---------------IQKPGIFISHVKPGSLSA------EVGLEIGDQIVEVNGVDFSNLDHKEAV-NV   77 (101)
T ss_dssp             CCCCEEEEECC---------------SSSCSEEEEEECTTSTTT------TTTCCTTCEEEEETTEETTSCCTTHHH-HH
T ss_pred             CcccEEEeccC---------------CCCCCEEEEEECCCChHH------hCCCCcccEEEEECCEECCCCCHHHHH-HH
Confidence            45888886421               223699999999999999      999999999999988865544  2222 22


Q ss_pred             cCCCCeeEEEEEE
Q psy18070        143 INHPSITCHILLR  155 (169)
Q Consensus       143 ~~~~~~~~~~i~r  155 (169)
                      ++......+.+.+
T Consensus        78 lk~~~~~~l~v~~   90 (101)
T d1x5na1          78 LKSSRSLTISIVA   90 (101)
T ss_dssp             HHHCSSEEEEECS
T ss_pred             HhCCCCEEEEEEE
Confidence            3333344555544

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.6e-07  Score=63.58  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=41.0

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+....+. .+.++..+ +.+..+.+.+.|
T Consensus        36 ~gi~V~~v~~~s~A~------~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          36 RGIFIKHVLEDSPAG------KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS   94 (96)
T ss_dssp             --EEEEEECSSSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             CCEEEEEECCCCHHH------HcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            699999999999999      998 999999999999887654 23333333 345566766655

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=63.75  Aligned_cols=58  Identities=12%  Similarity=0.044  Sum_probs=45.0

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|+......  .+......+.+..+.+.+.|.
T Consensus        32 ~~gi~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~   92 (94)
T d1wf8a1          32 KLGIFVKTVTEGGAAQ------RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE   92 (94)
T ss_dssp             EEEEEEEEECTTCHHH------HHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHH------HcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3689999999999999      998 999999999998876654  232223334566778888876

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.4e-07  Score=62.33  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|+.......  +......+.+..+.+.+.|.
T Consensus        30 ~~gi~I~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rp   90 (92)
T d2fe5a1          30 DNSIYITKIIEGGAAQ------KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP   90 (92)
T ss_dssp             BCCEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCCChh------hcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence            4699999999999999      998 9999999999988766542  32223334466678877763

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.41  E-value=1.3e-07  Score=63.26  Aligned_cols=60  Identities=12%  Similarity=-0.109  Sum_probs=48.8

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchhhhhh--hhcCCCCeeEEEEEEeeEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTSKLVV--WSINHPSITCHILLRLYLL  159 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i~r~~~~  159 (169)
                      .|..|..+.++|||+      ++||++||+|+++++.++.+..++..  ...+....+.+.+.|.=..
T Consensus        19 ~G~~v~~v~~~s~~~------~aGl~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          19 LGYRVSPGKDPVLFE------SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCHHHHH------HTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEecCCCCCHHH------HCCCCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEECCEE
Confidence            699999999999999      99999999999999988877765543  3445566779999996433

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.1e-07  Score=62.14  Aligned_cols=55  Identities=7%  Similarity=-0.009  Sum_probs=40.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILL  154 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~  154 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+..+...  .+........+..+.+.++
T Consensus        25 ~~~~I~~v~~gg~A~------~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~   82 (88)
T d1kwaa_          25 NHCIVARIMHGGMIH------RQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV   82 (88)
T ss_dssp             GGEEEEEECTTSHHH------HHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCEEEEEECCCCHHH------HcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            589999999999999      999 999999999999887644  3333233333445555554

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.6e-07  Score=64.05  Aligned_cols=57  Identities=11%  Similarity=-0.011  Sum_probs=44.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.|+|||+      ++| |++||.|+++|+.....-  .+......+.+..+.+.+.|.
T Consensus        38 ~~i~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~   97 (99)
T d1p1da2          38 DPLVISDIKKGSVAH------RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD   97 (99)
T ss_dssp             CCCEEEECCSSSHHH------HTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCchhh------hcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            589999999999999      999 999999999999876643  343333344466678887764

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=1.9e-07  Score=63.01  Aligned_cols=58  Identities=19%  Similarity=0.087  Sum_probs=42.5

Q ss_pred             CCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEE
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLR  155 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r  155 (169)
                      ...|++|.+|.|+|||+      ++| |++||.|+++|+...... .+.++..+ +.+..+.+.+.|
T Consensus        33 ~~~gi~I~~v~~gs~A~------~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          33 KTTGIFIKGIVPDSPAH------LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             CEEEEEEEEECTTSHHH------HHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCCCEEEEEECCCCHHH------HhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            34689999999999999      998 999999999998887653 22233333 345555666544

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.1e-07  Score=64.45  Aligned_cols=57  Identities=12%  Similarity=-0.038  Sum_probs=45.0

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh--hhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS--KLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|..|.|+|||+      ++||++||.|+++|+..+....  +........+..+.+.+.|.
T Consensus        30 ~~i~V~~v~~gs~A~------~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~   88 (94)
T d1vb7a_          30 TPIIVTKVTERGKAE------AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS   88 (94)
T ss_dssp             EEEECCCBCTTSSHH------HHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECC
T ss_pred             CCEEEEeccCCChhh------hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            579999999999999      9999999999999998876653  32333334467778888875

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.7e-07  Score=63.78  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhh-cCCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWS-INHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~-~~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++..... .+.++.. .+.+..+.+.+.|+.
T Consensus        40 ~~gi~V~~V~~gs~A~------~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          40 SEGIFVSKIVDSGPAA------KEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             SCCCEEEEECSSSHHH------HTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHH------HhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            4699999999999999      998 999999999999987654 2222332 344566788887753

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.1e-07  Score=64.88  Aligned_cols=56  Identities=16%  Similarity=0.015  Sum_probs=43.5

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.+++||+      ++||++||+|+++|++.+..- .+.++..++....+.+++.+
T Consensus        46 ~gv~V~~V~~g~~A~------~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~~~v~l~v~~  102 (128)
T d1uf1a_          46 LGIYITGVDPGSEAE------GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKD  102 (128)
T ss_dssp             CCCEEEEECTTCHHH------HHTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSEEEEEEEC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCcEEEEEEE
Confidence            589999999999999      999999999999999887654 23344445555556666654

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=4e-07  Score=62.95  Aligned_cols=49  Identities=14%  Similarity=0.028  Sum_probs=40.6

Q ss_pred             ceecEEEEECCHHHHHHhhcccCCCCCCCCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         65 KYIGITMLTLNEKLIEQLRRDRHIPYDLTHGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        65 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      .-+|+++..-                ....|++|.+|.++|||+      ++| |++||.|+++|+......
T Consensus        13 ~glG~~i~~~----------------~~~~~i~I~~v~~ggpA~------~~G~L~~GD~Il~INg~~v~~~   62 (112)
T d1qaua_          13 GGLGFLVKER----------------VSKPPVIISDLIRGGAAE------QSGLIQAGDIILAVNDRPLVDL   62 (112)
T ss_dssp             TBTSEEEEEC----------------SSSSCEEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTS
T ss_pred             CcEeEEEEee----------------cCCCCEEEEEEcCCCHHH------HhhhcccccEeEEECCcCccCC
Confidence            4589988752                123689999999999999      999 999999999998876643

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.7e-07  Score=63.25  Aligned_cols=58  Identities=12%  Similarity=-0.033  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh-hhhhhhcCCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-KLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~-~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|++|..|.+++||+      ++||++||.|+++|+..+...- +.++..++....+.+++.|+.
T Consensus        35 ~~i~V~~v~~gg~A~------~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~~~l~V~~~~   93 (101)
T d1ueza_          35 VGIYVSLVEPGSLAE------KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAG   93 (101)
T ss_dssp             CCEEEEEECTTSHHH------HHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCEEECCCC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEECC
Confidence            589999999999999      9999999999999998766552 333444455555666666654

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=4.3e-07  Score=60.93  Aligned_cols=56  Identities=9%  Similarity=-0.111  Sum_probs=42.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhh-hcCCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVW-SINHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~-~~~~~~~~~~~i~r  155 (169)
                      .|++|.+|.|+|||+      ++| |++||.|+++|+...... .+.++. ..+.+..+.+.+.|
T Consensus        30 ~~i~V~~V~~~~~A~------~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~   88 (90)
T d1qava_          30 MPILISKIFKGLAAD------QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEEECTTSHHH------HTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CCEEEEEEcCCCcee------eCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            589999999999999      999 999999999999887664 233333 33445566666644

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.35  E-value=9.9e-08  Score=73.65  Aligned_cols=33  Identities=36%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      .+++|+.++||+|||||+|.+|+||||++....
T Consensus       183 ~~~~~~~~~~G~SGgPl~~~~g~vVGI~~~~~~  215 (242)
T d1agja_         183 GLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVS  215 (242)
T ss_dssp             SEEEECCCCGGGTTCEEECTTSEEEEEEEEEEE
T ss_pred             cEEEecccCCccCCCcEECCCCeEEEEEeEeec
Confidence            378999999999999999999999999987654

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.9e-07  Score=62.76  Aligned_cols=59  Identities=15%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh-hhhhhhc-CCCCeeEEEEEEee
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS-KLVVWSI-NHPSITCHILLRLY  157 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~i~r~~  157 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++.+.... +.++..+ +.+..+.+.+.|.-
T Consensus        37 ~~gi~V~~v~~gs~A~------~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~   98 (105)
T d1whaa_          37 DAGIFVSRIAEGGAAH------RAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEECCTTSSHH------HHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECC
T ss_pred             CCCEEEEEEcCCCchh------hcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECC
Confidence            4689999999999999      998 9999999999988765542 2233333 34566788888753

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=6.9e-07  Score=60.39  Aligned_cols=57  Identities=11%  Similarity=-0.039  Sum_probs=44.2

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|++.+...  .+......+.+..+.+.+.|.
T Consensus        28 ~~v~I~~I~~g~~A~------~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~   87 (95)
T d1n7ea_          28 DPIIISSLTKGGLAE------RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ   87 (95)
T ss_dssp             SCCEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            679999999999999      998 999999999999887655  233333334466678877775

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.33  E-value=1.9e-07  Score=72.79  Aligned_cols=42  Identities=33%  Similarity=0.409  Sum_probs=36.0

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeecc-CCeEEEEehh
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKVT-AGISFAIPID   43 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~~-~~~~faiP~~   43 (169)
                      +|.|+.++||+|||||||.+|+||||.+.... ++..+.++.+
T Consensus       175 ~~~~~~~~~G~SGgPv~n~~G~vVGI~~~g~~~~~~~~~~~~~  217 (246)
T d1qtfa_         175 SQYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFN  217 (246)
T ss_dssp             SBEESCCCGGGTTCEEECTTCCEEEEEEEEETTTTEEEEEETT
T ss_pred             ceEEeeccCCCCCCcEECCCCeEEEEEecccCCCCCccceEee
Confidence            57889999999999999999999999998765 5677777764

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.32  E-value=4.7e-07  Score=60.96  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=42.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchhh-hhhhh----cCCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSK-LVVWS----INHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~-~~~~~----~~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.|+|||+      +.| |++||.|+++|+........ .+...    ..+++.+.+.+.|.
T Consensus        29 ~~i~I~~I~~gg~A~------~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVA------ADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCEEEEEEBTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCEEEEEECCCCcHH------HcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            599999999999999      998 99999999999988665422 22221    23455677877763

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.6e-07  Score=64.76  Aligned_cols=62  Identities=16%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchhhhhhhhc-CCCCeeEEEEEEeeEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSKLVVWSI-NHPSITCHILLRLYLLV  160 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~r~~~~v  160 (169)
                      ..|++|.+|.++|||+      +.| |++||.|+++|++.+.+-.+...... .....+.+.+.|.....
T Consensus        47 ~~gi~V~~v~~gg~A~------~~g~L~~GD~Il~INg~~v~~~~~~~~~l~~~~~~~v~l~v~r~~~~~  110 (124)
T d1wh1a_          47 DIGIYISEIDPNSIAA------KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQL  110 (124)
T ss_dssp             CCCEEEEEECSSSHHH------HTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred             CCCEEEEEECCCChhh------hhcccCCCCEEEEECCEECCCHHHHHHHHhhCCCCcEEEEEEeCCCcc
Confidence            3699999999999999      988 99999999999988766544433333 33556677777754433

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.4e-07  Score=59.94  Aligned_cols=55  Identities=9%  Similarity=0.009  Sum_probs=41.6

Q ss_pred             EEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEee
Q psy18070         97 LIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLY  157 (169)
Q Consensus        97 ~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~  157 (169)
                      .|.+|.++|||+      ++||++||.|+++|+......  .+......+.+..+.+.++-.|
T Consensus        26 ~V~~v~~g~~A~------~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p~~   82 (82)
T d1r6ja_          26 KITSIVKDSSAA------RNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF   82 (82)
T ss_dssp             EEEEECTTSHHH------HHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             EEEEECCCChHH------hcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEcCC
Confidence            699999999999      999999999999998876655  3333333344566787776544

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.6e-07  Score=58.87  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      .+++|.+|.|+|||+      ++| |++||.|+++|+......
T Consensus        26 ~~i~I~~v~~gg~A~------~~G~l~~GD~Il~VNg~~v~~~   62 (85)
T d1x45a1          26 PTVIIANMMHGGPAE------KSGKLNIGDQIMSINGTSLVGL   62 (85)
T ss_dssp             CCCEEEEECTTCHHH------HHCSCCTTCEEEEETTEECTTC
T ss_pred             CCEEEEEeCCCCHHH------HcCCCCcCCEEEEECCEECCCC
Confidence            589999999999999      998 999999999998876655

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-06  Score=60.28  Aligned_cols=57  Identities=16%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             CCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|..|.|+|||+      ++ |++||.|+++|+......  .+......+.+..+.+.+.|.
T Consensus        42 ~~gI~I~~V~~gs~A~------~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          42 DDGIFVTRVQPEGPAS------KL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             CCSEEEEEECTTSTTT------TT-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHH------hc-cCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEE
Confidence            3699999999999999      77 999999999998887654  333333333466778888875

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=9.6e-07  Score=60.31  Aligned_cols=54  Identities=15%  Similarity=0.117  Sum_probs=39.5

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHIL  153 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i  153 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+.....- .+.+...+ ..+..+.+.+
T Consensus        41 ~~i~I~~V~~gs~A~------~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v   97 (100)
T d1va8a1          41 DSVIISRIVKGGAAE------KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL   97 (100)
T ss_dssp             SSEEEEEECTTSHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEE
T ss_pred             CCEEEEEECCCChhh------hhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEE
Confidence            589999999999999      999 999999999998876643 22233333 3344445544

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.4e-07  Score=65.65  Aligned_cols=60  Identities=12%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhcC-CCCeeEEEEEEeeE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSIN-HPSITCHILLRLYL  158 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~~-~~~~~~~~i~r~~~  158 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++.+... .+.++..++ .+..+.+.+.|.+-
T Consensus        43 ~~gi~I~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          43 DEGIFISKVSPTGAAG------RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             CCCCEEEEECTTSHHH------HHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             CCCEEEEEECCCChHH------HcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4699999999999999      999 999999999999887654 233333444 45667888877664

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.8e-07  Score=61.54  Aligned_cols=58  Identities=14%  Similarity=0.059  Sum_probs=44.8

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~  156 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++.....  .+........+..+.+.+.|.
T Consensus        35 ~~~i~V~~v~~gg~A~------~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~   95 (110)
T d1um1a_          35 APGLYIQTLLPGSPAA------ADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS   95 (110)
T ss_dssp             CSSEEEEEECTTSHHH------HHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCEEEEEECCCCHHH------HcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            3689999999999999      998 999999999998876543  333333334566778888775

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=3.1e-07  Score=65.47  Aligned_cols=66  Identities=12%  Similarity=0.032  Sum_probs=50.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhcC---CCCeeEEEEEEeeEEeecccc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSIN---HPSITCHILLRLYLLVCSELT  165 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~~---~~~~~~~~i~r~~~~v~~~~~  165 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|+..+... .+.++..++   ....+.+.+.|.|..+..+..
T Consensus        49 ~~i~V~~v~~gg~A~------~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~~~p~~~~  119 (126)
T d1wifa_          49 PYLQISHLINKGAAA------SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQ  119 (126)
T ss_dssp             TEEEECCCCTTSSGG------GCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSSCCCTTTC
T ss_pred             CcEEEEEECCCChHH------HcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCCCCCCCCCC
Confidence            579999999999999      999 999999999998876643 222333333   246789999999887765543

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.6e-07  Score=60.52  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhcC---CCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSIN---HPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~~---~~~~~~~~i~r~~~  158 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|++.+... .+.++..++   ....+.+.+.|...
T Consensus        34 ~~i~V~~v~~g~~A~------~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          34 QPILIGAVIAMGSAD------RDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             SCCBEEEECTTSTTG------GGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEEEECCCChHH------HcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            579999999999999      998 999999999999887654 222333332   23456777777543

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.8e-07  Score=57.76  Aligned_cols=51  Identities=16%  Similarity=0.025  Sum_probs=37.6

Q ss_pred             EEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEE
Q psy18070         97 LIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHIL  153 (169)
Q Consensus        97 ~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i  153 (169)
                      +|.+|.|+|||+      ++||++||.|+++|+......  .+...........+.+.+
T Consensus        23 ~V~~V~~gs~A~------~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~v   75 (79)
T d1y7na1          23 IICSLMRGGIAE------RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT   75 (79)
T ss_dssp             EEEEECTTSHHH------HHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEE
T ss_pred             EEEEEcCCCHHH------HCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEE
Confidence            799999999999      999999999999999887654  332223233444555554

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=1.7e-06  Score=59.34  Aligned_cols=58  Identities=12%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             CCCcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEEe
Q psy18070         92 LTHGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        92 ~~~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      ...|++|.+|.++|||+       ++|++||.|+++|+...... .+.+...+ +.+..+.+.+.|.
T Consensus        37 ~~~~i~V~~v~~gs~A~-------~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          37 GETSIVISDVLPGGPAD-------GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             CCCBCEEEEECTTSSHH-------HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCCCEEEEEECCCChhh-------cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            34689999999999988       67999999999998877654 22233333 3456678887775

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.3e-06  Score=60.44  Aligned_cols=58  Identities=16%  Similarity=0.061  Sum_probs=44.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc---CCCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI---NHPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~---~~~~~~~~~i~r~~  157 (169)
                      .+++|.+|.+++||+      ++| |++||.|+++|+..+... .+.++..+   .....+.+.+.|.+
T Consensus        44 ~~i~I~~v~~gg~A~------~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~  106 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAA------QDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             CCCEEEEECTTSHHH------HTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CCEEEEEECCCCHHH------HcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCC
Confidence            689999999999999      998 999999999999987754 23333322   23456788888853

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.4e-06  Score=61.13  Aligned_cols=57  Identities=12%  Similarity=-0.010  Sum_probs=43.7

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhcCC-CCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSINH-PSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~~~-~~~~~~~i~r~  156 (169)
                      .|++|..|.++|||+      ++| |++||.|+++|+..+... .+.++..++. ...+.+.+.|.
T Consensus        49 ~gi~I~~V~~gs~A~------~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~  108 (117)
T d1ujda_          49 IGAYIAKILPGGSAE------QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             EEEEEEEECTTCHHH------HHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             cCEEEEEECCCCHHH------HcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEEC
Confidence            589999999999999      998 999999999999887653 3334444443 44567776654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.16  E-value=1.2e-06  Score=59.52  Aligned_cols=55  Identities=13%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILL  154 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~  154 (169)
                      .|++|.+|.|+|||+      ++| |++||.|+++|+......  .+...........+.+.+.
T Consensus        38 ~gi~I~~v~~gg~A~------~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~   95 (98)
T d1rzxa_          38 PGIFISRLVPGGLAE------STGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK   95 (98)
T ss_dssp             EEEEEEEECTTCHHH------HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEE
T ss_pred             CCEEEEEECCCChHH------hcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            589999999999999      999 999999999999887643  2332222334455555543

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.9e-06  Score=59.54  Aligned_cols=56  Identities=20%  Similarity=0.062  Sum_probs=41.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc---CCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI---NHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~---~~~~~~~~~i~r  155 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+...... .+.++..+   .....+.+.+.|
T Consensus        47 ~gi~V~~v~~gg~A~------~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          47 LGAFITKVKKGSLAD------VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             EEEEEEEECTTSHHH------HTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             cCEEEEEECCCCchh------hcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            599999999999999      988 999999999998876653 23332222   334556777665

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=58.13  Aligned_cols=55  Identities=11%  Similarity=0.043  Sum_probs=41.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILL  154 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~  154 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+......  .+...+..+.+..+.+.++
T Consensus        30 ~~i~I~~v~~~g~A~------~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          30 LPIYVKTVFAKGAAS------EDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             EEEEEEEECTTSHHH------HHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             cCEEEEEEcCCChHH------HhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            589999999999999      888 999999999999887655  3333333344566666654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.7e-06  Score=60.38  Aligned_cols=61  Identities=13%  Similarity=-0.008  Sum_probs=45.9

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-C-CCCeeEEEEEEeeEE
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-N-HPSITCHILLRLYLL  159 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~-~~~~~~~~i~r~~~~  159 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|+...... .+.++..+ . ....+.+.+.|+...
T Consensus        56 ~~~i~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~~  120 (130)
T d1i16a_          56 DKPLTINRIFKGAASE------QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CCCCEEEEECSSCCCS------SSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCChHH------hcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCCC
Confidence            3689999999999999      999 999999999998876553 33333333 3 344678888887543

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=9.6e-07  Score=60.66  Aligned_cols=57  Identities=18%  Similarity=0.099  Sum_probs=44.4

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecchh-hhhhhhcC-CCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTTS-KLVVWSIN-HPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~~-~~~~~~~~-~~~~~~~~i~r~  156 (169)
                      .+++|..|.+++||+      +++|++||.|+++|+..+.... +.++..++ .+..+.+.+.|.
T Consensus        29 ~~i~V~~v~~g~~A~------~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~   87 (103)
T d1v5la_          29 QPLVITRITPGSKAA------AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA   87 (103)
T ss_dssp             EEEECSCBCTTSTTG------GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCC
T ss_pred             CCEEEEEccCCChHH------hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            589999999999999      9999999999999988876653 22333333 456778888774

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.08  E-value=9.8e-07  Score=65.60  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++|+|+.++||+|||||+| ++++|||++...
T Consensus       129 ~~~~~~~~~~GdSGGPv~~-~~~~vGi~~~g~  159 (185)
T d2qaaa1         129 MIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGS  159 (185)
T ss_dssp             EEEESCCCCTTCTTCEEEE-TTEEEEEEEEEE
T ss_pred             EEEEeeeecCCcccceeEE-CCEEEEEEEEee
Confidence            4799999999999999999 689999998764

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2e-06  Score=59.64  Aligned_cols=58  Identities=17%  Similarity=0.023  Sum_probs=43.8

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEEe
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      ..+++|.+|.++|||+      ++| |++||.|+++|++.+..- .+.+...+ +.+..+.+.+.|.
T Consensus        42 ~~~~~I~~I~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~  102 (114)
T d1uewa_          42 TVPHKIGRIIDGSPAD------RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ  102 (114)
T ss_dssp             CCSCEEEEECTTCTTG------GGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCC
T ss_pred             cCCEEEEEECCCCHHH------hhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeC
Confidence            3689999999999999      988 999999999998876653 22233333 3456678887775

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.5e-06  Score=57.65  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecc
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYT  134 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~  134 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|+.....
T Consensus        34 ~~i~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~   69 (96)
T d1wi4a1          34 PLVYIHEVIPGGDCY------KDGRLKPGDQLVSINKESMIG   69 (96)
T ss_dssp             SSEEEEEECTTSHHH------HHCSCCTTCBEEEETTSCCTT
T ss_pred             CCEEEEEEeCCCccc------cCCCCCCCCEEEEECCEECCC
Confidence            589999999999999      998 99999999998887654

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.1e-06  Score=60.28  Aligned_cols=59  Identities=10%  Similarity=-0.125  Sum_probs=45.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhcCCCCeeEEEEEEeeE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSINHPSITCHILLRLYL  158 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~~~~~~~~~~i~r~~~  158 (169)
                      .+++|..|.+++||+      +++|++||+|+++|++.....  .+........+..+.+.+.|..-
T Consensus        29 ~~v~V~~v~~g~~a~------~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          29 MPLTISSLKDGGKAS------QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             EEEEECCCCTTCHHH------HTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred             CCEEEEecCCCChHH------HCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            589999999999999      999999999999999887554  23222333456677888887653

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.6e-06  Score=58.74  Aligned_cols=57  Identities=12%  Similarity=-0.027  Sum_probs=42.9

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch-hhhhhhhc-CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT-SKLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~-~~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|++.+... .+.+...+ +....+.+.+.|.
T Consensus        42 ~gi~V~~I~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~  101 (117)
T d1v62a_          42 SVITIDRIKPASVVD------RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPV  101 (117)
T ss_dssp             CEEEEEECCTTSHHH------HHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCB
T ss_pred             CCEEEEEECCCCHHH------HcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEEC
Confidence            699999999999999      988 999999999999886544 23333333 4455667777653

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.9e-06  Score=59.86  Aligned_cols=56  Identities=11%  Similarity=-0.137  Sum_probs=41.3

Q ss_pred             CcEEEEEEccCCcccccccccccCCCCCcEEEecCceeecch--hhhhhhhc-CCCCeeEEEEEE
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAGIKPTSSRLLGECLAQYTT--SKLVVWSI-NHPSITCHILLR  155 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aGL~~GDvI~~~~~v~~~~~--~~~~~~~~-~~~~~~~~~i~r  155 (169)
                      .+++|..|.++|||+      ++||++||.|+++|+..+...  .+...... .....+.+.+.+
T Consensus        36 ~~v~V~~V~~~spA~------~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          36 TPVQVHFLDPHCSAS------LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             SSCEECCCCTTSSHH------HHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             ccEEEEEEcCCChHH------hcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            579999999999999      999999999999999887654  33322222 234455666655

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.7e-06  Score=57.77  Aligned_cols=36  Identities=22%  Similarity=0.123  Sum_probs=32.8

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      .|++|.+|.++|||+      ++| |++||.|+++|+......
T Consensus        35 ~~i~V~~v~~gs~A~------~~g~L~~GD~Il~VNg~~v~~~   71 (107)
T d1x6da1          35 KVITVHRVFPNGLAS------QEGTIQKGNEVLSINGKSLKGT   71 (107)
T ss_dssp             SSCEEEEECSSSHHH------HHTSSCTTCBCCEETTEECSSC
T ss_pred             CCEEEEEECCCCHHH------HcCCCCcCCEEEEECCEecCCC
Confidence            689999999999999      988 999999999999887654

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.84  E-value=4.9e-06  Score=61.44  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++|+|+.++||+|||||+| .++++||++...
T Consensus       125 ~~~~~~~~~~GdSGGPv~~-~~~~vGi~sgg~  155 (181)
T d2sgaa_         125 MIQTNVCAQPGDSGGSLFA-GSTALGLTSGGS  155 (181)
T ss_dssp             EEEESCCCCTTCTTCEEEE-TTEEEEEEEEEE
T ss_pred             eEEEeeeccCCCcCCeeEE-CCEEEEEEEEec
Confidence            4789999999999999998 689999999753

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.8e-06  Score=58.16  Aligned_cols=57  Identities=12%  Similarity=0.066  Sum_probs=42.6

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh-hhhhhhc-CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS-KLVVWSI-NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      ++| |++||.|+++|+....... +.++..+ ..+..+.+.+.|.
T Consensus        36 ~~i~I~~v~~gg~A~------~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~   95 (103)
T d1wfva_          36 MDLYVLRLAEDGPAI------RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRG   95 (103)
T ss_dssp             EEEECCCBCTTSHHH------HHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECT
T ss_pred             CCEEEEEEcCCChHH------hcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEEC
Confidence            589999999999999      998 9999999999988765542 2222223 3355667777664

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=7.4e-06  Score=57.71  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=33.1

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      ..+++|.+|.|++||+      ++| |++||.|+++|++.....
T Consensus        44 ~~~i~V~~I~~gg~A~------~~G~L~~GD~Il~INg~~v~~~   81 (122)
T d1v5qa_          44 SSPPLISYIEADSPAE------RCGVLQIGDRVMAINGIPTEDS   81 (122)
T ss_dssp             SSCCEEEEECTTSHHH------HSCCCCTTCCEEEETTEESSSS
T ss_pred             CCCeEEEEECCCCHHH------HhCCCCcCCEEEEECCCcCCCC
Confidence            3689999999999999      998 999999999999887653

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=7e-06  Score=58.20  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchh-hhhhhhcC--------CCCeeEEEEEEee
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTS-KLVVWSIN--------HPSITCHILLRLY  157 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~-~~~~~~~~--------~~~~~~~~i~r~~  157 (169)
                      .|++|.+|.+++||+      ++| |++||.|+++|+....... +.++..++        ....+.+.+.|..
T Consensus        55 ~~i~V~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          55 LGIFIKSIIHGGAAF------KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             EEEEEEECCSSSSTH------HHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCEEEEEECCCCchh------ccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            589999999999999      998 9999999999998775432 22222221        2456788888753

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.4e-06  Score=56.70  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=33.4

Q ss_pred             CCcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         93 THGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        93 ~~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      ..|++|.+|.++|||+      ++| |++||.|+++|++.+.+.
T Consensus        37 ~~~~~V~~i~~~s~A~------~~G~l~~GD~Il~INg~~v~~~   74 (99)
T d1x5ra1          37 SSPPLVCFIEPDSPAE------RCGLLQVGDRVLSINGIATEDG   74 (99)
T ss_dssp             SSCCEEEEECTTSHHH------HTSSCCTTCBCSEETTEESTTS
T ss_pred             CCCEEEEEECCCChHH------HcCCCCCCCEEEEECCEECCCC
Confidence            4689999999999999      998 999999999999887654

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.3e-06  Score=56.05  Aligned_cols=36  Identities=17%  Similarity=-0.017  Sum_probs=32.3

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~  135 (169)
                      .+++|.+|.|+|||+      ++| |++||.|+++|++.....
T Consensus        32 ~~~~I~~i~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~   68 (103)
T d1ufxa_          32 PLPRIVTIQRGGSAH------NCGQLKVGHVILEVNGLTLRGK   68 (103)
T ss_dssp             SSCEEEEECTTSHHH------HHCSSCTTCBCCEETTEECTTC
T ss_pred             CCEEEEEEcCCcchh------hcCCCCCCCEEEEECCEECCCC
Confidence            579999999999999      998 999999999999886543

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.3e-05  Score=54.90  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=32.0

Q ss_pred             CcEEEEEEccCCccccccccccc--CCCCCcEEEecCceeecch
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSA--GIKPTSSRLLGECLAQYTT  135 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~a--GL~~GDvI~~~~~v~~~~~  135 (169)
                      .|++|.+|.++|||+      ++  +|++||.|+++|+......
T Consensus        34 ~~i~V~~v~~g~~A~------~~~g~L~~GD~Il~VNg~~v~~~   71 (106)
T d2cs5a1          34 MPVIVSRVAPGTPAD------LCVPRLNEGDQVVLINGRDIAEH   71 (106)
T ss_dssp             EEEEEEEECSSSTTT------SSSSCCCTTCEEEEETTBCTTSS
T ss_pred             CCEEEEEEcCCCcch------hccCCCCCCCEEEEECCEECCCC
Confidence            589999999999999      86  8999999999988876654

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1.1e-05  Score=56.41  Aligned_cols=57  Identities=7%  Similarity=-0.111  Sum_probs=41.6

Q ss_pred             CcEEEEEEccCCcccccccccccC-CCCCcEEEecCceeecchhh-hhhhhc-----CCCCeeEEEEEEe
Q psy18070         94 HGVLIWRVMYNSPAYFIKFRTSAG-IKPTSSRLLGECLAQYTTSK-LVVWSI-----NHPSITCHILLRL  156 (169)
Q Consensus        94 ~Gv~V~~V~~~spA~~~~~~~~aG-L~~GDvI~~~~~v~~~~~~~-~~~~~~-----~~~~~~~~~i~r~  156 (169)
                      .+++|.+|.++|||+      +.| |++||.|+++|++....... .+...+     .....+.+.+.|.
T Consensus        43 ~~v~I~~v~~gg~A~------~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          43 GKVVVSAVYEGGAAE------RHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEECCTTSHHH------HHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHH------hcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            479999999999999      998 99999999999887665422 222222     1244567777764

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=97.63  E-value=1.7e-05  Score=57.24  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             CEeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          1 MSLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         1 ~iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ++++|+.+.+|+|||||++ ++++|||++...
T Consensus       131 ~~~~~~~~~~GDSGgPl~~-~~~~vGi~s~g~  161 (187)
T d1hpga_         131 MVRTTACSAGGDSGGAHFA-GSVALGIHSGSS  161 (187)
T ss_dssp             EEEECCCCCTTCTTCEEEE-TTEEEEEEEEES
T ss_pred             cEEcCcccccCCCCCeEEE-CCEEEEEEEEEe
Confidence            3689999999999999998 689999998654

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=97.40  E-value=5.1e-05  Score=55.91  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             EeeccccCCCCccceEEcCCccEEEEEeeec
Q psy18070          2 SLTGIMVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         2 iq~da~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      +..++.+.+|+|||||+|.+|+||||++...
T Consensus       160 ~~~~~~~~~G~SGgPl~~~~~~lvGi~s~g~  190 (215)
T d1p3ca_         160 AYYTIDTFSGNSGSAMLDQNQQIVGVHNAGY  190 (215)
T ss_dssp             EEECCCCCTTCTTCEEECTTSCEEEECCEEE
T ss_pred             ceeecccCCCCccCeEECCCCEEEEEEEecc
Confidence            4578889999999999999999999988754

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0085  Score=39.42  Aligned_cols=42  Identities=17%  Similarity=-0.072  Sum_probs=29.4

Q ss_pred             ccCCCCCcEEEecCceeecch-hhhhhhhcC---CCCeeEEEEEEe
Q psy18070        115 SAGIKPTSSRLLGECLAQYTT-SKLVVWSIN---HPSITCHILLRL  156 (169)
Q Consensus       115 ~aGL~~GDvI~~~~~v~~~~~-~~~~~~~~~---~~~~~~~~i~r~  156 (169)
                      .++|++||.|+++|+..+... .+.++..++   ....+.+.+.|.
T Consensus        45 ~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             STTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             ccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            689999999999999887664 233333332   345678888775

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=94.94  E-value=0.0089  Score=45.19  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=23.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeecc
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVT   33 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~   33 (169)
                      ...+|+|||||++.+|++||+.+...+
T Consensus       188 ~~c~GDSGGPL~~~~g~~vGvvsgg~s  214 (263)
T d1arba_         188 VTEPGSSGSPIYSPEKRVLGQLHGGPS  214 (263)
T ss_dssp             CCCTTCTTCEEECTTSCEEEEEEECSC
T ss_pred             cccCCCCcceEEecCCCEEEEEEEEEe
Confidence            467899999999999999999987754

>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: Viral capsid protein
species: Venezuelan equine encephalitis virus [TaxId: 11036]

Probab=94.39  E-value=0.023  Score=40.05  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=29.8

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      .-.||+||-|.+|-.|+||+|+-...+++--.++.+
T Consensus       101 ~g~~GDSGRpi~DN~GkVVaIVLGG~neg~rTaLSV  136 (156)
T d1ep5a_         101 VGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSV  136 (156)
T ss_dssp             CCCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCCCccCcCCCcEEEEEecCCCCCCceEEEE
Confidence            457999999999999999999988877776666553

>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: Viral capsid protein
species: Sindbis virus [TaxId: 11034]

Probab=94.17  E-value=0.02  Score=40.03  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeeccCCeEEEEe
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIP   41 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP   41 (169)
                      .-.||+||-|.+|-.|+||+|+-...+++--.|+.
T Consensus        97 ~g~~GDSGRpi~DN~GrVVaIVLGGaneG~RTaLS  131 (152)
T d1wyka_          97 VGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALS  131 (152)
T ss_dssp             TCCTTCTTCEEECTTSCEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCCCCCccCcCCCcEEEEEecCCCCCCceEEE
Confidence            34699999999999999999988777766555554

>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: Viral capsid protein
species: Semliki forest virus [TaxId: 11033]

Probab=93.84  E-value=0.034  Score=38.81  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=29.2

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEEeh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPI   42 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~faiP~   42 (169)
                      -.||+||-|.+|-.|+||+|+-...+++--.++.+
T Consensus        96 g~~GDSGRpi~DN~GkVVaIVLGGa~eG~RTaLSV  130 (149)
T d1vcpa_          96 GKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSV  130 (149)
T ss_dssp             CCTTCTTCEEECTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCCccCcCCCCEEEEEecCCCCCCceEEEE
Confidence            46999999999999999999988777776666653

>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: NSP4 proteinase
species: Equine arteritis virus, EAV [TaxId: 11047]

Probab=91.33  E-value=0.062  Score=39.30  Aligned_cols=32  Identities=28%  Similarity=0.569  Sum_probs=25.7

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccCCeEEEE
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTAGISFAI   40 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~~~~fai   40 (169)
                      .++|+||.|+++.+| +|||.+-+...|.++.-
T Consensus       109 T~cGDSGSPVi~~d~-LvGVHTGSNk~GsG~vT  140 (198)
T d1mbma_         109 TTSGDSGSAVVQGDA-VVGVHTGSNTSGVAYVT  140 (198)
T ss_dssp             CCGGGTTCEEEETTE-EEEEEEEEEGGGEEEEE
T ss_pred             ccCCCCCCceecCCc-eEEEEeCCCCcCceEEE
Confidence            478999999997666 99999988776666543

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=89.56  E-value=0.12  Score=36.96  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ....|.|||||++.++.++||.+..
T Consensus       174 ~~c~~dsG~pl~~~~~~l~GI~S~g  198 (224)
T d1gdna_         174 DSCQGDSGGPIVDSSNTLIGAVSWG  198 (224)
T ss_dssp             BCCTTCTTCEEECTTCCEEEEEEEC
T ss_pred             cccccccCCceEecCCEEEEEEEeC
Confidence            4567999999999899999997743

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=87.43  E-value=0.35  Score=34.56  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=32.0

Q ss_pred             cCCCCccceEEcCCccEEEEEeeecc-----CCeEEEEehhhHHHHHHhhhh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKR   54 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~-----~~~~faiP~~~i~~~l~~l~~   54 (169)
                      .-.|.|||||+. ++.++||.+....     .....++-+...+..+++.++
T Consensus       182 ~c~gdsG~Pl~~-~~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i~  232 (235)
T d1tona_         182 TCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             CCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             ccCCCcCCeEEE-cCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHH
Confidence            457999999995 7899999886543     123455667666666665544

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.71  Score=32.64  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             ccccCCCCccceEEcCCccEEEEEeeecc---CCeEEEEehhhHHHHHHhhhhc
Q psy18070          5 GIMVKFGNSGGPLVNLDGEVIGINSMKVT---AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         5 da~in~GnSGGplvn~~G~vvGi~~~~~~---~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      +...-+|.|||||+. ++.++||.+....   .+...+.-+......+++.++.
T Consensus       167 ~~~~c~gdsG~Pl~~-~~~l~Gi~S~~~~~c~~~p~v~t~v~~y~~WI~~~i~~  219 (225)
T d1a7sa_         167 RGGICNGDGGTPLVC-EGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             SCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred             ccccccCCCCCCEEE-eCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCC
Confidence            345678999999995 7899999887653   2344455566666666665543

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.55  E-value=0.33  Score=34.28  Aligned_cols=24  Identities=50%  Similarity=0.762  Sum_probs=20.4

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ....|+|||||+ .++.++||.+..
T Consensus       167 ~~C~gdsG~Pl~-~~~~l~GI~s~~  190 (218)
T d2z7fe1         167 GVCFGDSGSPLV-CNGLIHGIASFV  190 (218)
T ss_dssp             BCCTTCTTCEEE-ETTEEEEEEEEE
T ss_pred             CccccccCCCEE-ECCEEEEEEEEe
Confidence            467899999999 689999997654

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=84.27  E-value=0.91  Score=32.16  Aligned_cols=46  Identities=22%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeecc----CCeEEEEehhhHHHHHHhh
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~----~~~~faiP~~~i~~~l~~l   52 (169)
                      .....|.|||||+- +++++||.+....    ...+.+.=+......+++.
T Consensus       174 ~~~~~gd~G~Pl~~-~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~  223 (228)
T d1fxya_         174 KDSCQGDSGGPVVC-NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT  223 (228)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHH
T ss_pred             cccccCccCccEEE-eCEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            45677899999995 7899999886553    2223444454444444443

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=83.81  E-value=0.84  Score=32.40  Aligned_cols=44  Identities=27%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             cCCCCccceEEcCCccEEEEEeeeccC-----CeEEEEehhhHHHHHHhh
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDYAIEFLTNY   52 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~~~-----~~~faiP~~~i~~~l~~l   52 (169)
                      .-.|+|||||+ .++.++||++.....     ..+.+.-+....+.+++.
T Consensus       173 ~c~gdsG~Pl~-~~~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~  221 (226)
T d1azza_         173 TCNGDSGGPLN-YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ  221 (226)
T ss_dssp             CCTTCTTCEEE-ETTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHH
T ss_pred             cccCCcCCCEE-EcCEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHH
Confidence            45799999998 589999998865531     234445565555555443

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.52  E-value=0.9  Score=32.32  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             cccCCCCccceEEcCCccEEEEEeeecc----CC-eEEEEehhhHHHHHHhhh
Q psy18070          6 IMVKFGNSGGPLVNLDGEVIGINSMKVT----AG-ISFAIPIDYAIEFLTNYK   53 (169)
Q Consensus         6 a~in~GnSGGplvn~~G~vvGi~~~~~~----~~-~~faiP~~~i~~~l~~l~   53 (169)
                      .....|+|||||+. ++.++||.+....    .+ .+.+.-+......+++.+
T Consensus       182 ~~~c~gdsG~pl~~-~~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i  233 (237)
T d1ao5a_         182 KDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM  233 (237)
T ss_dssp             CBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHH
T ss_pred             CcccCCCCCCeeEE-ccEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            35678999999996 7899999886542    12 344455555555444443

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.28  Score=35.33  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             cCCCCccceEEcCCccEEEEEeeec
Q psy18070          8 VKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         8 in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ..+|.|||||+ .++.++||.+...
T Consensus       185 ~C~gDsGgPl~-~~~~l~Gi~S~g~  208 (240)
T d1mzaa_         185 SCKGDAGGPLI-CKGVFHAIVSGGH  208 (240)
T ss_dssp             CCTTCTTCEEE-ETTEEEEEECSSC
T ss_pred             CccCCCCCeEE-ECCEEEEEEEeCC
Confidence            45799999999 5899999988654

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=81.40  E-value=0.48  Score=33.68  Aligned_cols=25  Identities=40%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             ccCCCCccceEEcCCccEEEEEeeec
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMKV   32 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~~   32 (169)
                      ....|.|||||+ .+++++||.+...
T Consensus       170 ~~c~gdsGgPl~-~~~~l~Gi~S~g~  194 (222)
T d1hj8a_         170 DSCQGDSGGPVV-CNGELQGVVSWGY  194 (222)
T ss_dssp             BCCTTCTTCEEE-ETTEEEEEEEECS
T ss_pred             ccccCCcccEEE-ECCEEEEEEEEec
Confidence            457899999999 5899999987654

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.84  E-value=0.52  Score=33.46  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             ccCCCCccceEEcCCccEEEEEeee
Q psy18070          7 MVKFGNSGGPLVNLDGEVIGINSMK   31 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~vvGi~~~~   31 (169)
                      ....|.|||||+ .++.++||++..
T Consensus       170 ~~c~gd~G~Pl~-~~~~l~Gi~S~g  193 (221)
T d1lo6a_         170 DSCQGDSGGPLV-CGDHLRGLVSWG  193 (221)
T ss_dssp             BCCTTTTTCEEE-ETTEEEEEEEEC
T ss_pred             CCccCCCCCcEE-ECCEEEEEEEEc
Confidence            457899999999 688999998753

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=1.1  Score=31.99  Aligned_cols=49  Identities=24%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             ccCCCCccceEEcCCcc----EEEEEeeecc----CCeEEEEehhhHHHHHHhhhhcC
Q psy18070          7 MVKFGNSGGPLVNLDGE----VIGINSMKVT----AGISFAIPIDYAIEFLTNYKRKD   56 (169)
Q Consensus         7 ~in~GnSGGplvn~~G~----vvGi~~~~~~----~~~~faiP~~~i~~~l~~l~~~g   56 (169)
                      ....|.|||||+. +++    ++||.+....    .....+.-+......+++.++..
T Consensus       186 ~~~~gdsGgPl~~-~~~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~~~  242 (254)
T d2bz6h1         186 DSCKGDSGGPHAT-HYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             BCCGGGTTCEEEE-EETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             ccccCccccceEE-ccCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhhC
Confidence            4667999999995 444    9999886543    23456677777777777766654

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=1.1  Score=33.51  Aligned_cols=46  Identities=26%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             CCCCccceEEcCCcc----EEEEEeeecc--------------CCeEEEEehhhHHHHHHhhhhc
Q psy18070          9 KFGNSGGPLVNLDGE----VIGINSMKVT--------------AGISFAIPIDYAIEFLTNYKRK   55 (169)
Q Consensus         9 n~GnSGGplvn~~G~----vvGi~~~~~~--------------~~~~faiP~~~i~~~l~~l~~~   55 (169)
                      -.|+|||||+- +++    ++||.+....              ....+..-+......+++.+++
T Consensus       218 C~GDSGgPL~~-~~~~~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~  281 (287)
T d1rrka1         218 CRGDSGGPLIV-HKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  281 (287)
T ss_dssp             CGGGTTCEEEE-EETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTT
T ss_pred             CCCCccCCeEE-ecCCeEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcC
Confidence            34899999983 333    9999875432              1134456666555555555443