Psyllid ID: psy18074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Secondary Structure (PSIPRED)
ccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEccccccccccEEEEEEcccccEEEEccccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccEEEEEHHccccHHHHHccccccEEEEcccccccEEEEcccccEEEEEEccccccEEEEEccccEEEEEEEEcccccEEEEccccccEEEEEccccHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEAFVFTAanedfnlysydirqlnsplnvhkdmtsavtsvdysptgrefvaggYDKSLRLYLAHqghsrdiyhtkrMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEklgyvnnkqrQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQkrkesnkrthsapgtvpqtKERQRAVVKEME
Flexible Loop (DISEMBL)
MEAFVFTAanedfnlySYDIRQLNSPLNVHKDMTSAvtsvdysptgREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAseklgyvnnKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYnaqaehrairskqkrkesnkrthsapgtvpqtkerqravvkeme
Low Complexity Region (SEG)
MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Disordered region (IsUnstruct)
***FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN*********************IRRIA********I*********************************************
Disordered Region (DISOPRED)
MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG***N**RQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN************************************AVV****
Disordered Region (DISEMBL)
MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA****************************************
Disordered Region (DISPRO)
*EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRK****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q6NVS5	445	DDB1- and CUL4-associated	yes	N/A	1.0	0.442	0.548	2e-65
Q7ZYQ6	445	DDB1- and CUL4-associated	N/A	N/A	1.0	0.442	0.548	3e-65
Q803X4	445	DDB1- and CUL4-associated	yes	N/A	1.0	0.442	0.543	5e-64
Q5ZLK1	445	DDB1- and CUL4-associated	yes	N/A	0.979	0.433	0.538	6e-64
Q6PAC3	445	DDB1- and CUL4-associated	yes	N/A	0.979	0.433	0.523	4e-61
Q9NV06	445	DDB1- and CUL4-associated	yes	N/A	0.949	0.420	0.524	1e-59
Q5R4T8	445	DDB1- and CUL4-associated	yes	N/A	0.949	0.420	0.518	8e-59
O74340	436	Protein sof1 OS=Schizosac	yes	N/A	0.979	0.442	0.502	7e-51
P33750	489	Protein SOF1 OS=Saccharom	yes	N/A	0.969	0.390	0.476	1e-46
Q7KWL3	445	DDB1- and CUL4-associated	yes	N/A	0.898	0.397	0.395	3e-40

>sp|Q6NVS5|DCA13_XENTR DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 153/197 (77%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FTAANE+FNLY+YD+R ++ P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct: 249 MEAFIFTAANENFNLYTYDMRYMDGPVKVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +    GHSR++YHTKRMQHVT   WS DNK+V+  SDEMN+R+WKA+ASEKLG ++ ++R
Sbjct: 309 FPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGLLSPRER 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N+R HS PG
Sbjct: 369 AAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPG 428

Query: 181 TVPQTKERQRAVVKEME 197
           +VP   E+++ V+  +E
Sbjct: 429 SVPIPSEKKKHVLAVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Xenopus tropicalis (taxid: 8364)

>sp|Q7ZYQ6|DCA13_XENLA DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 153/197 (77%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FTAANE+FNLY+YD+R ++SP+ VH D  SAV  VDYSPTG+E V+  +DKS+R+
Sbjct: 249 MEAFIFTAANENFNLYTYDMRYMDSPVKVHMDHVSAVLDVDYSPTGKELVSASFDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +    GHSR++YHTKRMQHVT   WS DNK+V+  SDEMN+R+WKA+ASEKLG ++ ++R
Sbjct: 309 FPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGVLSPRER 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N+R HS PG
Sbjct: 369 AAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPG 428

Query: 181 TVPQTKERQRAVVKEME 197
           +VP   E+++ V+  +E
Sbjct: 429 SVPIPSEKKKHVLAVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus laevis (taxid: 8355)

>sp|Q803X4|DCA13_DANRE DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2 SV=1

 Score =  243 bits (621), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 107/197 (54%), Positives = 150/197 (76%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA+ FT ANED+NLY+YDIR L+ P+ VH D  SAV  VDYSPTGREFV+  +DK++R+
Sbjct: 249 MEAYYFTCANEDYNLYTYDIRNLDVPVTVHMDHVSAVLDVDYSPTGREFVSASFDKTIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +GHSR++YHTKRMQHV    WS D+KF++S SDEMN+R+WKA+ASEKLG ++ +++
Sbjct: 309 FPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDEMNIRLWKANASEKLGVLSTREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A +Y++ L QK+ HHPQ+RRIARHR +PR +   + E + ++  ++RKE N R HS PG
Sbjct: 369 TAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQNVRKHSKPG 428

Query: 181 TVPQTKERQRAVVKEME 197
           +VP   E+++ VVK +E
Sbjct: 429 SVPLLTEKEKHVVKVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Danio rerio (taxid: 7955)

>sp|Q5ZLK1|DCA13_CHICK DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1

 Score =  243 bits (620), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 150/193 (77%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FTAANED+NLY++D+R L SP+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct: 249 MEAFIFTAANEDYNLYTFDMRFLTSPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSVRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +GHSR++YHTKRMQHV    W+ D+++++  SDEMN+R+WKA+ASEKLG +  +++
Sbjct: 309 FPVDKGHSREVYHTKRMQHVITVKWTSDSRYILCGSDEMNIRLWKANASEKLGVLAPREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A++Y++ LK+K+ HHPQI+RIARHR +P+ IY    E R +R  ++RKE N+R HS PG
Sbjct: 369 AAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELNRRKHSKPG 428

Query: 181 TVPQTKERQRAVV 193
           +VP   E+++ +V
Sbjct: 429 SVPVVSEKKKHIV 441

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Gallus gallus (taxid: 9031)

>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2 SV=2

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 148/193 (76%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct: 249 MEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct: 309 FPVDKSRSREVYHTKRMQHVMCVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N+R HS PG
Sbjct: 369 AANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMNRRKHSKPG 428

Query: 181 TVPQTKERQRAVV 193
           +VP   ER++ VV
Sbjct: 429 SVPIVSERKKHVV 441

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2

 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 143/187 (76%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct: 249 MEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct: 309 FPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N+  HS PG
Sbjct: 369 AAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPG 428

Query: 181 TVPQTKE 187
           +VP   E
Sbjct: 429 SVPLVSE 435

Possible role in ribosomal RNA processing (By similarity). May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1

 Score =  226 bits (576), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 142/187 (75%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FTAANED+NLY++D+  L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct: 249 MEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct: 309 FPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N+  HS PG
Sbjct: 369 AAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPG 428

Query: 181 TVPQTKE 187
           +VP   E
Sbjct: 429 SVPIVSE 435

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|O74340|DCA13_SCHPO Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sof1 PE=3 SV=1

 Score =  199 bits (507), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 133/193 (68%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF F A +ED NLY YD+R L   L+V+KD  SAV SVD+SPTG+EFV+G YDK++R+
Sbjct: 240 MEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRI 299

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           Y   +GHSRD+YHTKRMQ VT   +S+D +++ S SD+ N+R+W+A AS +    + ++ 
Sbjct: 300 YNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREE 359

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
             L Y +SL+++Y H P+IRRIARHR +P ++  A    R   +  KR+E N R HS  G
Sbjct: 360 NRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKG 419

Query: 181 TVPQTKERQRAVV 193
            VP  KER+R VV
Sbjct: 420 AVPYEKERERHVV 432

Required for ribosomal RNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33750|DCA13_YEAST Protein SOF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOF1 PE=1 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 128/193 (66%), Gaps = 2/193 (1%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF F  ANED N Y YD+R L+  LNV KD  SAV  VD+SPTG E V G YDKS+R+
Sbjct: 272 MEAFNFVTANEDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRI 331

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           Y  + GHSR+IYHTKRMQHV    +S+D+K++IS SD+ N+R+W++ A E+      +++
Sbjct: 332 YKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWERSNVKTTREK 391

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
             L+Y E LK+++ H P+I+RI+RHR VP+ I  AQ       S  KR+E+N+R      
Sbjct: 392 NKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANER--RTRK 449

Query: 181 TVPQTKERQRAVV 193
            +P   ER++ +V
Sbjct: 450 DMPYISERKKQIV 462

Required for ribosomal RNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7KWL3|DCA13_DICDI DDB1- and CUL4-associated factor 13 OS=Dictyostelium discoideum GN=wdsof1 PE=3 SV=1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 119/177 (67%)

Query: 2   EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
           E+F    ANED N+Y YDIR L+  + VH+D   +V  +DYSPTGRE V+G YDK++R++
Sbjct: 251 ESFTLAIANEDENVYQYDIRNLSKAMTVHRDHVGSVLDIDYSPTGREIVSGSYDKTIRIF 310

Query: 62  LAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ 121
                 SR++Y+T RMQ +   +++ D++F++S SD+MN+RVWKA++S  LG ++N++++
Sbjct: 311 PVDSYKSREVYYTNRMQRIFSVLFTADSRFILSGSDDMNIRVWKANSSAPLGILSNREKE 370

Query: 122 ALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSA 178
            L+Y + +K+K+   P+++ IA HR+VP+ +Y  +     I   ++R+  N   +S 
Sbjct: 371 KLEYQDKIKEKFKEIPELKTIATHRRVPQLVYKRRFIKNEIHKAKQRRVKNISNNSG 427

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
66506992	445	PREDICTED: DDB1- and CUL4-associated fac	0.989	0.438	0.635	9e-73
380021475	445	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.989	0.438	0.635	9e-73
357614240	447	hypothetical protein KGM_21307 [Danaus p	1.0	0.440	0.629	1e-72
383862327	445	PREDICTED: DDB1- and CUL4-associated fac	0.974	0.431	0.635	6e-72
91076846	445	PREDICTED: similar to GA20229-PA [Tribol	0.989	0.438	0.620	7e-72
332022306	444	WD repeat and SOF domain-containing prot	0.979	0.434	0.637	9e-72
345490198	445	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.989	0.438	0.620	5e-71
225711030	446	WD repeat and SOF domain-containing prot	1.0	0.441	0.588	7e-71
307205152	439	WD repeat and SOF domain-containing prot	0.984	0.441	0.628	2e-70
340712999	444	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.989	0.439	0.605	5e-70

>gi|66506992|ref|XP_394497.2| PREDICTED: DDB1- and CUL4-associated factor 13-like [Apis mellifera]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 159/195 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA  FT ANED+NLY+YDIR+L +P+NVH D   AV  VDYSPTG+EFV+G YDKS+R+
Sbjct: 249 MEAITFTCANEDYNLYTYDIRKLKTPVNVHMDHVEAVIDVDYSPTGKEFVSGSYDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  ++GHSR++YHTKRMQ +T   WSLDNK++IS SDEMN+RVWKA ASEKLG +  +++
Sbjct: 309 FEVNKGHSREVYHTKRMQRLTCMGWSLDNKYIISGSDEMNIRVWKARASEKLGVLKPREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+YSE+LK+K+A HPQ++RIARHRQ+P+HIYNA+ E R IR K KRKESN+R HS PG
Sbjct: 369 AALNYSEALKEKFAAHPQVKRIARHRQIPKHIYNAKNELRTIREKIKRKESNRRAHSKPG 428

Query: 181 TVPQTKERQRAVVKE 195
           TVP   ER+R V ++
Sbjct: 429 TVPFISERKRHVAQQ 443

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021475|ref|XP_003694590.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Apis florea]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 159/195 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA  FT ANED+NLY+YDIR+L +P+NVH D   AV  VDYSPTG+EFV+G YDKS+R+
Sbjct: 249 MEAITFTCANEDYNLYTYDIRKLKTPVNVHMDHVEAVIDVDYSPTGKEFVSGSYDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  ++GHSR++YHTKRMQ +T   WSLDNK++IS SDEMN+RVWKA ASEKLG +  +++
Sbjct: 309 FEXNKGHSREVYHTKRMQRLTCMGWSLDNKYIISGSDEMNIRVWKARASEKLGVLKPREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+YSE+LK+K+A HPQ++RIARHRQ+P+HIYNA+ E R IR K KRKESN+R HS PG
Sbjct: 369 AALNYSEALKEKFAAHPQVKRIARHRQIPKHIYNAKNELRTIREKTKRKESNRRAHSKPG 428

Query: 181 TVPQTKERQRAVVKE 195
           TVP   ER+R V ++
Sbjct: 429 TVPFIPERKRHVAQQ 443

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614240|gb|EHJ68981.1| hypothetical protein KGM_21307 [Danaus plexippus]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 161/197 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA++FT ANED+NLY++DIR+L  P+NVH D TSAV  VDY+PTGREFVAG YDK++R+
Sbjct: 251 MEAYIFTVANEDYNLYTFDIRKLRQPVNVHVDHTSAVIDVDYAPTGREFVAGSYDKTVRI 310

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           + + +GHSRD+YHTKRMQ +T   W+LDNK++++ SDEMN+R+WKA ASEKLG +  ++R
Sbjct: 311 FESLKGHSRDVYHTKRMQRLTCVKWTLDNKYILTGSDEMNIRMWKARASEKLGVLKPRER 370

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+YSE+LK+K++ HPQI+RIARHR VP+HI NAQ E R I+ K KRKE NKR+HS PG
Sbjct: 371 TALNYSEALKEKFSGHPQIKRIARHRHVPKHILNAQKELRTIKEKSKRKEGNKRSHSKPG 430

Query: 181 TVPQTKERQRAVVKEME 197
            VP   ER++ VVKE E
Sbjct: 431 AVPFVPERKKHVVKEDE 447

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862327|ref|XP_003706635.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Megachile rotundata]

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 156/192 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA  FT ANED+NLY+YDIR+L +P+NVHKD   AV  VDY+PTGREFV+G YDKS+R+
Sbjct: 249 MEAVTFTCANEDYNLYTYDIRKLKTPVNVHKDHVEAVVDVDYAPTGREFVSGSYDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  H+GHSR++YHTKRMQ +T   WSLDNK+V+S SDEMN+RVWKA A+EKLG +  +++
Sbjct: 309 FEVHKGHSREVYHTKRMQRLTCVAWSLDNKYVLSGSDEMNIRVWKAKAAEKLGVLKPREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+Y+E+LK K+A HPQ++RIARHRQVP+HIYNA+AE R I  K KRKE+N+R HS PG
Sbjct: 369 AALNYNEALKAKFAAHPQVKRIARHRQVPKHIYNAKAELRTINEKSKRKEANRRAHSKPG 428

Query: 181 TVPQTKERQRAV 192
           +VP   ER + V
Sbjct: 429 SVPFVPERAKHV 440

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076846|ref|XP_974788.1| PREDICTED: similar to GA20229-PA [Tribolium castaneum] gi|270001818|gb|EEZ98265.1| hypothetical protein TcasGA2_TC000707 [Tribolium castaneum]

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 158/195 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FT ANED+NLY++D R L  P+N+H D   AVTS+DY+PTGREFV+G YDK++R+
Sbjct: 249 MEAFIFTGANEDYNLYTFDTRNLKQPVNIHMDHVGAVTSIDYAPTGREFVSGSYDKTVRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +   +GHSR+IYHTKRMQ +T   W+LDNK+++S SDEMN+R+WKA ASEKLG +  ++R
Sbjct: 309 FETSKGHSREIYHTKRMQRLTCVQWTLDNKYILSGSDEMNIRIWKARASEKLGPLKPRER 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+YSE+LK+KYA HP++RRIARHR VP+HIYNAQ E R I+ K KRKE+N+R HS PG
Sbjct: 369 AALNYSEALKEKYATHPKVRRIARHRHVPKHIYNAQNELRTIKEKGKRKEANRRAHSKPG 428

Query: 181 TVPQTKERQRAVVKE 195
            VP   ER++ V+KE
Sbjct: 429 EVPYEPERKKHVLKE 443

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022306|gb|EGI62618.1| WD repeat and SOF domain-containing protein 1 [Acromyrmex echinatior]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 156/193 (80%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF+FT ANED+NLY+YD R++ +P+N+H D   AV  VDYSPTGREFV+G YDKS+R+
Sbjct: 248 MEAFIFTCANEDYNLYTYDTRKMKTPVNIHMDHVEAVIDVDYSPTGREFVSGSYDKSIRI 307

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           + A++GHSR++YHT+RM  +T   WSLDNKFVIS SDEMNLR+WKA ASEKLG +  ++R
Sbjct: 308 FEANKGHSREVYHTRRMHRLTCVGWSLDNKFVISGSDEMNLRIWKAKASEKLGILRARER 367

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL  +++LK+KYA HP++RRIARHRQVP+HIYNA+AE R IR K KRKE+NKR HS  G
Sbjct: 368 NALLVNDALKEKYAAHPEVRRIARHRQVPKHIYNARAELRTIREKSKRKEANKRYHSKKG 427

Query: 181 TVPQTKERQRAVV 193
            +P   ERQ+ VV
Sbjct: 428 AIPFVSERQKNVV 440

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490198|ref|XP_003426327.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Nasonia vitripennis]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 158/195 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEAF FT A+ED+NLY++D R+L +P+NVH D   AVT VDYSPTGREFV+G YDKS+R+
Sbjct: 249 MEAFTFTCASEDYNLYTFDTRKLRTPVNVHMDHVEAVTDVDYSPTGREFVSGSYDKSIRI 308

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  ++GHSR++YHT+RMQ +T   WSLDNK+++S SDEMN+RVWKA ASEKLG +  +++
Sbjct: 309 FEINKGHSREVYHTRRMQRLTSIAWSLDNKYILSGSDEMNIRVWKARASEKLGVLKPREK 368

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+Y+E+LK+K+A HPQ+RRIARHRQVP+HI NA +E R IR K KRKE+N+R HS  G
Sbjct: 369 AALNYAEALKEKFASHPQVRRIARHRQVPKHILNAASEIRRIREKSKRKETNRRIHSKKG 428

Query: 181 TVPQTKERQRAVVKE 195
            VP   ERQ+ VV+E
Sbjct: 429 DVPFVSERQKHVVRE 443

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225711030|gb|ACO11361.1| WD repeat and SOF domain-containing protein 1 [Caligus rogercresseyi]

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 161/197 (81%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA +FT ANED+N Y++DIR+L+ PLNVH D  SAV  +DYSPTG+E V G YDK++R+
Sbjct: 250 MEAMIFTVANEDYNCYAFDIRKLDRPLNVHMDHISAVIDLDYSPTGKEIVTGSYDKTIRI 309

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  +QGHSR++YHTKRMQ +T   WSLDNK+++S SDEMN+R+WKA+ASE+LG + ++QR
Sbjct: 310 FNVYQGHSREVYHTKRMQRLTSVKWSLDNKYIMSGSDEMNIRLWKANASEQLGVLKDRQR 369

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+Y+ +LK+KY ++P+IRRIA+H+ VP+H+ NA AEH+ I++ + RKE+N+R HSAPG
Sbjct: 370 AALEYNATLKEKYGNYPKIRRIAKHKNVPKHVLNAMAEHKIIKASKSRKEANRRMHSAPG 429

Query: 181 TVPQTKERQRAVVKEME 197
            VP   ER++ VVKEME
Sbjct: 430 KVPYVPEREKHVVKEME 446

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205152|gb|EFN83595.1| WD repeat and SOF domain-containing protein 1 [Harpegnathos saltator]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 155/194 (79%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           ME+  FT ANED+NLY+YDIR+  +P+NVH D   AV  VDYSPTG+EFV+G YDKS+R+
Sbjct: 244 MESMTFTCANEDYNLYTYDIRKWQTPVNVHMDHVEAVIDVDYSPTGKEFVSGSYDKSIRI 303

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  ++GHSR++YHTKRMQ +T   WSLDNK++I+ SDEMNLR+WKA ASEKLG V ++QR
Sbjct: 304 FEVNKGHSREVYHTKRMQRLTCVGWSLDNKYIITGSDEMNLRLWKARASEKLGIVRSRQR 363

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            +L Y+E+LK+KY  HPQIRRIARHRQVP+H+YNAQAE R IR K KRKE+N+R HS  G
Sbjct: 364 TSLLYNEALKEKYMAHPQIRRIARHRQVPKHLYNAQAELRKIREKNKRKEANRRYHSKKG 423

Query: 181 TVPQTKERQRAVVK 194
            VP   ER+  +V+
Sbjct: 424 AVPFVSEREAHIVR 437

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712999|ref|XP_003395039.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Bombus terrestris]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 157/195 (80%)

Query: 1   MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
           MEA  FT ANED+NLY+YDIR+L +P+NVH D   AV  VDYSPTG+EFV+G YD+S+R+
Sbjct: 248 MEAVTFTCANEDYNLYTYDIRKLRTPVNVHMDHVQAVIDVDYSPTGKEFVSGSYDRSIRI 307

Query: 61  YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
           +  ++G SR++YHTKRMQ +T   WSLDNK+++S SDEMN+RVWKA ASEKLG +  ++R
Sbjct: 308 FEVNKGRSREVYHTKRMQRLTCMAWSLDNKYIVSGSDEMNIRVWKAKASEKLGVLRPRER 367

Query: 121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
            AL+YSE+LK+K++ HPQ++RI+RHRQVP+H+YNA+AE R IR K KRKE+N+R HS  G
Sbjct: 368 TALNYSEALKEKFSAHPQVKRISRHRQVPKHVYNAKAELRTIRQKSKRKEANRRAHSKRG 427

Query: 181 TVPQTKERQRAVVKE 195
            VP   ER + VV++
Sbjct: 428 AVPFVSERSKNVVQQ 442

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
FB|FBgn0036500	446	CG7275 [Drosophila melanogaste	0.989	0.437	0.602	1.1e-62
UNIPROTKB|Q6NVS5	445	dcaf13 "DDB1- and CUL4-associa	1.0	0.442	0.548	1.2e-60
UNIPROTKB|Q7ZYQ6	445	dcaf13 "DDB1- and CUL4-associa	1.0	0.442	0.548	1.5e-60
ZFIN|ZDB-GENE-040426-703	445	dcaf13 "ddb1 and cul4 associat	1.0	0.442	0.543	2.2e-59
UNIPROTKB|Q5ZLK1	445	DCAF13 "DDB1- and CUL4-associa	0.979	0.433	0.538	9.3e-59
RGD|1308458	445	Dcaf13 "DDB1 and CUL4 associat	0.979	0.433	0.523	7.5e-57
MGI|MGI:2684929	445	Dcaf13 "DDB1 and CUL4 associat	0.979	0.433	0.523	9.6e-57
UNIPROTKB|Q9NV06	445	DCAF13 "DDB1- and CUL4-associa	0.979	0.433	0.518	2.5e-56
UNIPROTKB|F1P9T8	445	DCAF13 "Uncharacterized protei	0.984	0.435	0.522	4.2e-56
UNIPROTKB|Q5R4T8	445	DCAF13 "DDB1- and CUL4-associa	0.979	0.433	0.512	1.4e-55

FB|FBgn0036500 CG7275 [Drosophila melanogaster (taxid:7227)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 118/196 (60%), Positives = 150/196 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF FT ANED NLY++D R+L +PL VH D  SAVT VDYSPTG+EFV+  YDK++R+
Sbjct:   249 MEAFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSASYDKTIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             Y AH  HSRDIYHTKRMQHV    WSLDN++V S SDEMN+R+WKA+ASEKLG +  ++R
Sbjct:   309 YNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVRMWKANASEKLGVIRPRER 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
                +Y E+LKQKYA HPQI+RIARHRQVPRH+ NAQ + R ++ K++ KE+N R H+   
Sbjct:   369 VNFNYQEALKQKYAAHPQIKRIARHRQVPRHVLNAQKKMRTVKEKEQVKEANVRKHTKKS 428

Query:   181 T-VPQTKERQRAVVKE 195
               VP   E+++ V+KE
Sbjct:   429 KKVPYVSEKKKHVLKE 444

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q6NVS5 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 108/197 (54%), Positives = 153/197 (77%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANE+FNLY+YD+R ++ P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFIFTAANENFNLYTYDMRYMDGPVKVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +    GHSR++YHTKRMQHVT   WS DNK+V+  SDEMN+R+WKA+ASEKLG ++ ++R
Sbjct:   309 FPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGLLSPRER 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N+R HS PG
Sbjct:   369 AAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPG 428

Query:   181 TVPQTKERQRAVVKEME 197
             +VP   E+++ V+  +E
Sbjct:   429 SVPIPSEKKKHVLAVVE 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q7ZYQ6 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus laevis (taxid:8355)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 108/197 (54%), Positives = 153/197 (77%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANE+FNLY+YD+R ++SP+ VH D  SAV  VDYSPTG+E V+  +DKS+R+
Sbjct:   249 MEAFIFTAANENFNLYTYDMRYMDSPVKVHMDHVSAVLDVDYSPTGKELVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +    GHSR++YHTKRMQHVT   WS DNK+V+  SDEMN+R+WKA+ASEKLG ++ ++R
Sbjct:   309 FPVQSGHSREVYHTKRMQHVTCVRWSADNKYVLCGSDEMNIRIWKANASEKLGVLSPRER 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N+R HS PG
Sbjct:   369 AAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPG 428

Query:   181 TVPQTKERQRAVVKEME 197
             +VP   E+++ V+  +E
Sbjct:   429 SVPIPSEKKKHVLAVVE 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040426-703 dcaf13 "ddb1 and cul4 associated factor 13" [Danio rerio (taxid:7955)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 107/197 (54%), Positives = 150/197 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEA+ FT ANED+NLY+YDIR L+ P+ VH D  SAV  VDYSPTGREFV+  +DK++R+
Sbjct:   249 MEAYYFTCANEDYNLYTYDIRNLDVPVTVHMDHVSAVLDVDYSPTGREFVSASFDKTIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +GHSR++YHTKRMQHV    WS D+KF++S SDEMN+R+WKA+ASEKLG ++ +++
Sbjct:   309 FPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDEMNIRLWKANASEKLGVLSTREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A +Y++ L QK+ HHPQ+RRIARHR +PR +   + E + ++  ++RKE N R HS PG
Sbjct:   369 TAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQNVRKHSKPG 428

Query:   181 TVPQTKERQRAVVKEME 197
             +VP   E+++ VVK +E
Sbjct:   429 SVPLLTEKEKHVVKVVE 445

GO:0003674 "molecular_function" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q5ZLK1 DCAF13 "DDB1- and CUL4-associated factor 13" [Gallus gallus (taxid:9031)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 104/193 (53%), Positives = 150/193 (77%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANED+NLY++D+R L SP+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFIFTAANEDYNLYTFDMRFLTSPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSVRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +GHSR++YHTKRMQHV    W+ D+++++  SDEMN+R+WKA+ASEKLG +  +++
Sbjct:   309 FPVDKGHSREVYHTKRMQHVITVKWTSDSRYILCGSDEMNIRLWKANASEKLGVLAPREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A++Y++ LK+K+ HHPQI+RIARHR +P+ IY    E R +R  ++RKE N+R HS PG
Sbjct:   369 AAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELNRRKHSKPG 428

Query:   181 TVPQTKERQRAVV 193
             +VP   E+++ +V
Sbjct:   429 SVPVVSEKKKHIV 441

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

RGD|1308458 Dcaf13 "DDB1 and CUL4 associated factor 13" [Rattus norvegicus (taxid:10116)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 101/193 (52%), Positives = 148/193 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFNFTAANEDYNLYTFDMRALDTPVMVHLDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +  SR++YHT+RMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + +++R
Sbjct:   309 FPVDKSRSREVYHTRRMQHVICVKWTSDSKYILCGSDEMNIRLWKANASEKLGVLTSRER 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N+R HS PG
Sbjct:   369 AANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMNRRKHSKPG 428

Query:   181 TVPQTKERQRAVV 193
             +VP   ER++ VV
Sbjct:   429 SVPVVSERKKHVV 441

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA;ISO

MGI|MGI:2684929 Dcaf13 "DDB1 and CUL4 associated factor 13" [Mus musculus (taxid:10090)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 101/193 (52%), Positives = 148/193 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct:   309 FPVDKSRSREVYHTKRMQHVMCVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N+R HS PG
Sbjct:   369 AANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMNRRKHSKPG 428

Query:   181 TVPQTKERQRAVV 193
             +VP   ER++ VV
Sbjct:   429 SVPIVSERKKHVV 441

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|Q9NV06 DCAF13 "DDB1- and CUL4-associated factor 13" [Homo sapiens (taxid:9606)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 100/193 (51%), Positives = 148/193 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct:   309 FPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N+  HS PG
Sbjct:   369 AAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPG 428

Query:   181 TVPQTKERQRAVV 193
             +VP   E+++ VV
Sbjct:   429 SVPLVSEKKKHVV 441

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

UNIPROTKB|F1P9T8 DCAF13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 103/197 (52%), Positives = 149/197 (75%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANED+NLY++D+R L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct:   309 FPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A DY++ LK+K+ HHP I+RIARHR +P+ IY+   E R ++  ++RKE N+  HS PG
Sbjct:   369 AAKDYNQKLKEKFQHHPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRLKHSKPG 428

Query:   181 TV---PQTKERQRAVVK 194
             +V   P+ K+   AVVK
Sbjct:   429 SVSIVPEKKKHIVAVVK 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q5R4T8 DCAF13 "DDB1- and CUL4-associated factor 13" [Pongo abelii (taxid:9601)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 99/193 (51%), Positives = 147/193 (76%)

Query:     1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 60
             MEAF+FTAANED+NLY++D+  L++P+ VH D  SAV  VDYSPTG+EFV+  +DKS+R+
Sbjct:   249 MEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRI 308

Query:    61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR 120
             +   +  SR++YHTKRMQHV    W+ D+K+++  SDEMN+R+WKA+ASEKLG + ++++
Sbjct:   309 FPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREK 368

Query:   121 QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG 180
              A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N+  HS PG
Sbjct:   369 AAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPG 428

Query:   181 TVPQTKERQRAVV 193
             +VP   E+++ VV
Sbjct:   429 SVPIVSEKKKHVV 441

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLK1	DCA13_CHICK	No assigned EC number	0.5388	0.9796	0.4337	yes	N/A
Q5R4T8	DCA13_PONAB	No assigned EC number	0.5187	0.9492	0.4202	yes	N/A
Q6NVS5	DCA13_XENTR	No assigned EC number	0.5482	1.0	0.4426	yes	N/A
Q803X4	DCA13_DANRE	No assigned EC number	0.5431	1.0	0.4426	yes	N/A
O74340	DCA13_SCHPO	No assigned EC number	0.5025	0.9796	0.4426	yes	N/A
Q6PAC3	DCA13_MOUSE	No assigned EC number	0.5233	0.9796	0.4337	yes	N/A
Q9NV06	DCA13_HUMAN	No assigned EC number	0.5240	0.9492	0.4202	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	197
pfam04158	88	pfam04158, Sof1, Sof1-like domain	1e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-04

>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain

 Score =  106 bits (268), Expect = 1e-30
 Identities = 48/88 (54%), Positives = 67/88 (76%)

Query: 106 AHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSK 165
           A+ASEKLG ++ ++RQAL+Y+E+LK+KY H P+I+RIARHR VP+ I  AQ   R ++  
Sbjct: 1   ANASEKLGVLSPRERQALEYNEALKEKYKHMPEIKRIARHRHVPKAIKKAQKIKREMKEA 60

Query: 166 QKRKESNKRTHSAPGTVPQTKERQRAVV 193
           +KRKE N+R HS PG+VP   ER++ VV
Sbjct: 61  KKRKEENRRKHSKPGSVPPKPERKKHVV 88

Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery. Length = 88

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
           FV +++  D  +  +D+R     +      T  V SV +SP G + ++   D +++L+  
Sbjct: 149 FVASSSQ-DGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Query: 64  HQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 104
             G        H      V    +S D   + S S++  +RVW
Sbjct: 207 STGKCLGTLRGHENG---VNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 8e-08
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYL 62
            + + ++ D  +  +D+R    PL+     T  V+S+ +SP G   +A    D ++RL+ 
Sbjct: 169 LLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 63  AHQG---HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
              G    S    H+        + +S D   + S S +  +R+W   +S  L
Sbjct: 228 LSTGKLLRSTLSGHSDS----VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 19/109 (17%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY-- 61
           ++ + ++ D  +  +D+      +      TS V+SV +SP GR   +   DK+++++  
Sbjct: 65  YLASGSS-DKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 62  ------LAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 104
                    +GH+           V    +S D  FV S+S +  +++W
Sbjct: 123 ETGKCLTTLRGHTDW---------VNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 5   VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
           +  + + D  +  +D+R  +S L      +S+V SV +SP G+   +G  D ++RL+   
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 65  QGHSRDIYHTKRMQHVTHTVWSLD-----NKFVISASDEMNLRVWKAHASEKL 112
            G    +  +  ++     V SL      +  V   SD+  +R+W     + L
Sbjct: 315 TG---KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH---VTHTVWSLDNK 90
           T  VT V +SP G+    G  D +++++    G            H   V     S D  
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGT 64

Query: 91  FVISASDEMNLRVWKAHASEKL 112
           ++ S S +  +R+W     E +
Sbjct: 65  YLASGSSDKTIRLWDLETGECV 86

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
            +  + + D  +  +D+       +     + +V S  +SP G    +G  D ++RL+  
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDL 270

Query: 64  HQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK 105
               S     +     V    +S D K + S S +  +R+W 
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 34  TSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNK 90
           T  V SV +SP G  FVA    D +++L+    G        HT  +  V    +S D +
Sbjct: 135 TDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA---FSPDGE 190

Query: 91  FVISASDEMNLRVWKAHASEKLG 113
            ++S+S +  +++W     + LG
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLG 213

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
           T  V  V  S  G    +G  DK++RL+    G            H T  V S+    D 
Sbjct: 51  TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT----GH-TSYVSSVAFSPDG 105

Query: 90  KFVISASDEMNLRVW 104
           + + S+S +  ++VW
Sbjct: 106 RILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
            + V SV +SP G    +G  D ++R++       R     + +   T++V SL    D 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTLSGHTNSVTSLAWSPDG 273

Query: 90  KFVISASDEMNLRVWK 105
           K + S S +  +R+W 
Sbjct: 274 KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 12  DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRD 70
           D  +  +D+      +   +  + +VTS+ +SP G+   +G   D +++L+    G    
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 71  IYHTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKL 112
                    V+   +S D   +I S S +  +R+W     + L
Sbjct: 193 TLAGHT-DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
            L   K  T  VTSV +SP G+   +G  D +++L+
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
            L   K  T  VTSV +SP G    +G  D ++R++
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
            + +  ++D  +  +D+R       +     S V SV +SP GR   +G  D ++RL+  
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGH--SNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Query: 64  HQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH 107
             G           + VT   +S D K + S S +  +R+W   
Sbjct: 400 STGSLLRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 6   FTAANEDFNLYSYDIR--QLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
             + +ED  +  +D+R  +    L+ H   T++VTS+ +SP G+   +G  D ++R++
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGH---TNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG0272|consensus	459		99.96
KOG0263|consensus	707		99.96
KOG0271|consensus	480		99.96
KOG0263|consensus	707		99.96
KOG0279|consensus	315		99.95
KOG0272|consensus	459		99.95
KOG0271|consensus	480		99.94
KOG0268|consensus	433		99.94
KOG0286|consensus	343		99.94
KOG0266|consensus	456		99.94
KOG0286|consensus	343		99.92
KOG0279|consensus	315		99.92
KOG0284|consensus	464		99.92
KOG0266|consensus	456		99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0282|consensus	503		99.9
KOG0285|consensus	460		99.9
KOG0295|consensus	406		99.9
KOG0315|consensus	311		99.9
KOG0283|consensus	712		99.9
KOG0273|consensus	524		99.9
KOG0291|consensus	893		99.9
PTZ00420	568	coronin; Provisional	99.9
KOG0315|consensus	311		99.9
KOG0273|consensus	524		99.9
KOG0285|consensus	460		99.89
KOG0319|consensus	775		99.89
KOG0275|consensus	508		99.89
KOG0645|consensus	312		99.89
KOG0284|consensus	464		99.89
KOG0310|consensus	487		99.88
KOG0265|consensus	338		99.87
KOG0276|consensus	794		99.87
PTZ00420	568	coronin; Provisional	99.87
KOG0319|consensus	775		99.86
KOG0295|consensus	406		99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0302|consensus	440		99.86
KOG0291|consensus	893		99.86
KOG0292|consensus	1202		99.86
KOG0269|consensus	839		99.86
KOG0289|consensus	506		99.85
KOG0316|consensus	307		99.85
KOG0318|consensus	603		99.85
KOG0645|consensus	312		99.85
KOG0306|consensus	888		99.85
KOG0277|consensus	311		99.85
KOG0264|consensus	422		99.85
KOG0294|consensus	362		99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0277|consensus	311		99.85
KOG0276|consensus	794		99.84
KOG0296|consensus	399		99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0318|consensus	603		99.83
KOG0278|consensus	334		99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0293|consensus	519		99.83
KOG0647|consensus	347		99.83
KOG0310|consensus	487		99.83
KOG0269|consensus	839		99.83
KOG0283|consensus	712		99.83
KOG0264|consensus	422		99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
KOG0281|consensus	499		99.82
KOG0275|consensus	508		99.82
KOG0973|consensus	942		99.82
KOG0265|consensus	338		99.82
KOG0281|consensus	499		99.82
KOG0296|consensus	399		99.82
KOG0292|consensus	1202		99.82
KOG0267|consensus	825		99.82
KOG0268|consensus	433		99.81
KOG0973|consensus	942		99.81
KOG0289|consensus	506		99.81
KOG0305|consensus	484		99.81
KOG1407|consensus	313		99.81
KOG0640|consensus	430		99.81
KOG0772|consensus	641		99.81
KOG0305|consensus	484		99.8
KOG0267|consensus	825		99.8
KOG1332|consensus	299		99.8
KOG1274|consensus	933		99.79
KOG0316|consensus	307		99.79
KOG0640|consensus	430		99.79
KOG0308|consensus	735		99.79
KOG0308|consensus	735		99.79
KOG0288|consensus	459		99.79
KOG0772|consensus	641		99.79
KOG0313|consensus	423		99.79
KOG0643|consensus	327		99.78
KOG1539|consensus	910		99.78
KOG0293|consensus	519		99.78
KOG0282|consensus	503		99.78
KOG0274|consensus	537		99.78
KOG0302|consensus	440		99.77
KOG0313|consensus	423		99.77
KOG2096|consensus	420		99.77
KOG1407|consensus	313		99.77
KOG4283|consensus	397		99.77
KOG0303|consensus	472		99.76
KOG0646|consensus	476		99.76
KOG1446|consensus	311		99.76
KOG0639|consensus	705		99.75
KOG1273|consensus	405		99.75
KOG0288|consensus	459		99.75
KOG1446|consensus	311		99.74
KOG0639|consensus	705		99.74
KOG0306|consensus	888		99.74
KOG0278|consensus	334		99.73
KOG0274|consensus	537		99.73
KOG2048|consensus	691		99.73
KOG0299|consensus	479		99.73
KOG0300|consensus	481		99.72
KOG2110|consensus	391		99.72
KOG0294|consensus	362		99.71
KOG0270|consensus	463		99.71
KOG0641|consensus	350		99.71
KOG0641|consensus	350		99.71
KOG1445|consensus	1012		99.71
KOG1009|consensus	434		99.71
KOG0300|consensus	481		99.7
KOG1332|consensus	299		99.7
KOG0301|consensus	745		99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG0646|consensus	476		99.68
KOG0771|consensus	398		99.68
KOG4283|consensus	397		99.68
KOG0643|consensus	327		99.68
KOG1034|consensus	385		99.67
KOG1408|consensus	1080		99.67
KOG1036|consensus	323		99.67
KOG1274|consensus	933		99.67
KOG0301|consensus	745		99.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.67
KOG1036|consensus	323		99.66
KOG2055|consensus	514		99.66
KOG4328|consensus	498		99.66
KOG0649|consensus	325		99.64
KOG0290|consensus	364		99.64
KOG0303|consensus	472		99.63
KOG0299|consensus	479		99.62
KOG1188|consensus	376		99.62
KOG1445|consensus	1012		99.62
KOG0270|consensus	463		99.62
KOG2096|consensus	420		99.62
KOG2394|consensus	636		99.61
KOG0647|consensus	347		99.61
KOG1273|consensus	405		99.61
KOG4378|consensus	673		99.61
KOG2055|consensus	514		99.61
KOG0307|consensus	1049		99.6
KOG1007|consensus	370		99.6
KOG0321|consensus	720		99.58
KOG0322|consensus	323		99.57
KOG0307|consensus	1049		99.57
KOG1034|consensus	385		99.57
KOG1188|consensus	376		99.57
KOG2106|consensus	626		99.56
KOG2919|consensus	406		99.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.56
KOG2048|consensus	691		99.54
KOG2919|consensus	406		99.54
KOG1063|consensus	764		99.54
KOG4378|consensus	673		99.53
KOG1007|consensus	370		99.53
KOG0321|consensus	720		99.52
KOG1272|consensus	545		99.52
KOG0642|consensus	577		99.52
KOG1539|consensus	910		99.52
KOG4328|consensus	498		99.52
KOG0649|consensus	325		99.51
KOG2111|consensus	346		99.5
KOG1523|consensus	361		99.49
KOG2445|consensus	361		99.48
KOG1408|consensus	1080		99.48
KOG2394|consensus	636		99.48
KOG1524|consensus	737		99.47
KOG2110|consensus	391		99.46
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
KOG2106|consensus	626		99.45
KOG3881|consensus	412		99.44
KOG1009|consensus	434		99.43
KOG2139|consensus	445		99.43
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
KOG2445|consensus	361		99.4
KOG1523|consensus	361		99.4
KOG2111|consensus	346		99.4
KOG1517|consensus	1387		99.39
KOG2139|consensus	445		99.39
KOG0650|consensus	733		99.39
KOG1310|consensus	758		99.37
KOG1063|consensus	764		99.37
KOG0290|consensus	364		99.37
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG1538|consensus	1081		99.37
PRK01742	429	tolB translocation protein TolB; Provisional	99.36
COG2319	466	FOG: WD40 repeat [General function prediction only	99.36
KOG0974|consensus	967		99.36
KOG3881|consensus	412		99.35
KOG4227|consensus	609		99.35
KOG0771|consensus	398		99.34
KOG1310|consensus	758		99.34
KOG0644|consensus	1113		99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
KOG1524|consensus	737		99.32
KOG0644|consensus	1113		99.31
KOG4227|consensus	609		99.3
KOG1963|consensus	792		99.3
KOG2321|consensus	703		99.3
KOG1517|consensus	1387		99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
PRK03629	429	tolB translocation protein TolB; Provisional	99.29
KOG0650|consensus	733		99.29
KOG1587|consensus	555		99.28
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.28
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
PRK11028	330	6-phosphogluconolactonase; Provisional	99.26
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
PRK02889	427	tolB translocation protein TolB; Provisional	99.25
PRK05137	435	tolB translocation protein TolB; Provisional	99.25
PRK11028	330	6-phosphogluconolactonase; Provisional	99.25
KOG1240|consensus	1431		99.24
KOG1963|consensus	792		99.24
KOG0280|consensus	339		99.24
KOG1538|consensus	1081		99.23
PRK04922	433	tolB translocation protein TolB; Provisional	99.21
KOG1587|consensus	555		99.2
KOG0322|consensus	323		99.2
KOG2315|consensus	566		99.19
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.16
KOG3914|consensus	390		99.15
KOG2321|consensus	703		99.14
KOG4547|consensus	541		99.13
KOG1334|consensus	559		99.13
KOG0642|consensus	577		99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
KOG1272|consensus	545		99.08
KOG4547|consensus	541		99.07
PRK04792	448	tolB translocation protein TolB; Provisional	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
PRK01029	428	tolB translocation protein TolB; Provisional	99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG4497|consensus	447		99.03
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG4497|consensus	447		98.96
KOG0974|consensus	967		98.91
KOG0280|consensus	339		98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.91
KOG2066|consensus	846		98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
KOG1240|consensus	1431		98.87
KOG3914|consensus	390		98.83
KOG4714|consensus	319		98.82
KOG2695|consensus	425		98.79
PRK04043	419	tolB translocation protein TolB; Provisional	98.78
KOG2041|consensus	1189		98.77
KOG2066|consensus	846		98.77
KOG1354|consensus	433		98.76
KOG2314|consensus	698		98.76
KOG1275|consensus	1118		98.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.72
KOG1064|consensus	2439		98.72
KOG4532|consensus	344		98.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.7
KOG4714|consensus	319		98.7
KOG4190|consensus	1034		98.69
PRK04043	419	tolB translocation protein TolB; Provisional	98.68
KOG2695|consensus	425		98.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.63
KOG4532|consensus	344		98.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.45
KOG2315|consensus	566		98.45
KOG0882|consensus	558		98.43
KOG1354|consensus	433		98.41
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.41
KOG2314|consensus	698		98.41
KOG1064|consensus	2439		98.4
KOG1334|consensus	559		98.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.38
KOG1409|consensus	404		98.37
KOG3621|consensus	726		98.37
KOG1008|consensus	783		98.35
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.35
KOG0309|consensus	1081		98.35
KOG0309|consensus	1081		98.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.31
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.26
KOG1912|consensus	1062		98.23
KOG1409|consensus	404		98.18
KOG1645|consensus	463		98.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.15
KOG4640|consensus	665		98.13
KOG3621|consensus	726		98.11
PF04158	88	Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1	98.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.1
KOG1832|consensus	1516		98.09
KOG1275|consensus	1118		98.08
KOG1920|consensus	1265		98.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
KOG2041|consensus	1189		98.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
KOG1645|consensus	463		97.97
KOG4640|consensus	665		97.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.83
KOG1832|consensus	1516		97.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.79
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.75
KOG4649|consensus	354		97.73
KOG2114|consensus	933		97.69
PRK02888	635	nitrous-oxide reductase; Validated	97.67
KOG3617|consensus	1416		97.67
KOG2079|consensus	1206		97.66
KOG1912|consensus	1062		97.66
PRK02888	635	nitrous-oxide reductase; Validated	97.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.63
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.57
KOG0882|consensus	558		97.56
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.56
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.55
KOG2444|consensus	238		97.52
PRK13616	591	lipoprotein LpqB; Provisional	97.52
KOG3617|consensus	1416		97.51
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.47
KOG2395|consensus	644		97.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.43
KOG2079|consensus	1206		97.4
KOG4190|consensus	1034		97.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.35
PRK13616	591	lipoprotein LpqB; Provisional	97.35
KOG1920|consensus	1265		97.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.21
KOG2114|consensus	933		97.2
COG3391	381	Uncharacterized conserved protein [Function unknow	97.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.06
KOG4649|consensus	354		97.04
COG3391	381	Uncharacterized conserved protein [Function unknow	96.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.94
KOG2444|consensus	238		96.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.9
KOG1008|consensus	783		96.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.84
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.63
KOG2395|consensus	644		96.6
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.48
KOG4460|consensus	741		96.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.33
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.24
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.07
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.93
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.93
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.93
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.62
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.46
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.24
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.2
KOG3630|consensus	1405		95.13
KOG2377|consensus	657		95.07
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.01
PRK10115	686	protease 2; Provisional	94.92
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.9
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.77
KOG2247|consensus	615		94.46
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.34
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.23
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.17
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.98
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.9
KOG4499|consensus	310		93.72
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.63
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.44
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.37
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.36
KOG2377|consensus	657		93.36
PHA02713	557	hypothetical protein; Provisional	93.33
KOG4441|consensus	571		93.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.99
COG5167	776	VID27 Protein involved in vacuole import and degra	92.72
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.55
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.35
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.32
PHA02713	557	hypothetical protein; Provisional	92.25
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.03
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.96
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.83
KOG2247|consensus	615		91.5
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	91.27
PHA03098	534	kelch-like protein; Provisional	91.21
PHA03098	534	kelch-like protein; Provisional	91.2
KOG3630|consensus	1405		91.02
KOG4499|consensus	310		90.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.9
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.85
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.84
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.69
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.52
KOG1916|consensus	1283		90.19
PRK13684	334	Ycf48-like protein; Provisional	90.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.8
KOG1916|consensus	1283		89.7
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.7
COG4590	733	ABC-type uncharacterized transport system, permeas	89.65
KOG4460|consensus	741		89.56
KOG4441|consensus	571		89.53
KOG1897|consensus	1096		89.19
KOG2280|consensus	829		89.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.99
PHA02790	480	Kelch-like protein; Provisional	87.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.25
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.84
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.69
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.61
COG5167	776	VID27 Protein involved in vacuole import and degra	86.36
KOG1897|consensus	1096		85.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.46
KOG1898|consensus	1205		84.61
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.17
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	83.43
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.38
PRK10115	686	protease 2; Provisional	83.02
PRK13684	334	Ycf48-like protein; Provisional	82.46
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	82.14
COG4590	733	ABC-type uncharacterized transport system, permeas	81.98
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.65
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	81.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.13
KOG1520|consensus	376		80.59
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	80.15
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	80.03

>KOG0272|consensus

Probab=99.96  E-value=6e-30  Score=183.19  Aligned_cols=167  Identities=13%  Similarity=0.197  Sum_probs=147.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++..+|+|+.||++++|++.. ..++..+.+|...|..++|+|+|.+|++++.|.+-++||++++..+.. ..+|...|.
T Consensus       230 ~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-QEGHs~~v~  307 (459)
T KOG0272|consen  230 SDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-QEGHSKGVF  307 (459)
T ss_pred             CccceeeeccCCceeeeccCC-CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-hcccccccc
Confidence            366899999999999999986 588999999999999999999999999999999999999999876544 378999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~  160 (197)
                      +++|+|||..+++|+.|..-+|||+++|.++-.+.+|...        |..++|+|+|..||+|+. +.+.||+++..+.
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~--------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE--------ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEecccccc--------eeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            9999999999999999999999999999999999988776        679999999999998765 5899999998877


Q ss_pred             HHHhHhHhhhhhhhcCCC
Q psy18074        161 AIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~  178 (197)
                      ...+.-+.......++.+
T Consensus       380 ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             ceecccccchhhheEecc
Confidence            666666666666666554

>KOG0263|consensus

Probab=99.96  E-value=9.1e-29  Score=188.56  Aligned_cols=150  Identities=16%  Similarity=0.282  Sum_probs=137.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      -|.+||+|+.|++.++|.... ..|.+.+.+|.+.|.|+.|+|+..++++|+.|.+|++||+.+|..++.| .+|.++|.
T Consensus       504 ~GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~  581 (707)
T KOG0263|consen  504 RGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVT  581 (707)
T ss_pred             CceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceE
Confidence            378999999999999999987 6899999999999999999999999999999999999999999998888 88999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      +++|+|+|++|++|+.||.|.+||+.++..+..+.+|...        +.++.||.||..||+++ +..+.+|++.+...
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t--------i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT--------IYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc--------eeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            9999999999999999999999999999999888888544        78999999999999766 55999999865544


Q ss_pred             H
Q psy18074        161 A  161 (197)
Q Consensus       161 ~  161 (197)
                      .
T Consensus       654 ~  654 (707)
T KOG0263|consen  654 L  654 (707)
T ss_pred             c
Confidence            3

>KOG0271|consensus

Probab=99.96  E-value=8.6e-28  Score=170.71  Aligned_cols=164  Identities=16%  Similarity=0.208  Sum_probs=141.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +|..|++|+.|.++++||+.+ ..+..+..+|...|.+++|+|||..|++|+.||.|++||..+|........+|...|+
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It  204 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT  204 (480)
T ss_pred             CCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee
Confidence            688999999999999999998 6889999999999999999999999999999999999999999987777789999999


Q ss_pred             EEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeec
Q psy18074         82 HTVWSL-----DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNA  155 (197)
Q Consensus        82 ~v~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~  155 (197)
                      +++|.|     .+++|++++.||.++|||+..+.++..+.+|...        |+|+.|-.+|- |++++ +..+.+|++
T Consensus       205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--------VTCvrwGG~gl-iySgS~DrtIkvw~a  275 (480)
T KOG0271|consen  205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--------VTCVRWGGEGL-IYSGSQDRTIKVWRA  275 (480)
T ss_pred             EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--------eEEEEEcCCce-EEecCCCceEEEEEc
Confidence            999986     5789999999999999999999999888888765        79999988764 45555 559999999


Q ss_pred             chhhHHHHhHhHhhhhhhhc
Q psy18074        156 QAEHRAIRSKQKRKESNKRT  175 (197)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (197)
                      ...+-.....-+.--.|.+.
T Consensus       276 ~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  276 LDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             cchhHHHhhcccchheeeee
Confidence            88766655554444444443

>KOG0263|consensus

Probab=99.96  E-value=2.9e-28  Score=185.84  Aligned_cols=175  Identities=16%  Similarity=0.246  Sum_probs=154.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .|.++|++++.|+++++|.+.+ ...+..+.+|..+|+++.|+|.|-+|++++.|++-++|.......++.+ .+|-+.|
T Consensus       461 Pd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-aghlsDV  538 (707)
T KOG0263|consen  461 PDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-AGHLSDV  538 (707)
T ss_pred             ccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-ccccccc
Confidence            3678999999999999999997 5777888999999999999999999999999999999999988887777 7788999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      .|+.|+|+..|+++|+.|.++++||+.+|..+..+.+|...        |.+++|||+|++|+++..+ .+.||++....
T Consensus       539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~--------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP--------VTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc--------eEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence            99999999999999999999999999999999988887664        7899999999999988765 78999999988


Q ss_pred             HHHHhHhHhhhhhhhcCCCCCCCCCc
Q psy18074        160 RAIRSKQKRKESNKRTHSAPGTVPQT  185 (197)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (197)
                      .......+..-...+.++..+.+..+
T Consensus       611 ~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  611 LVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             chhhhhcccCceeEEEEecCCCEEEe
Confidence            88777777666666777776665443

>KOG0279|consensus

Probab=99.95  E-value=2e-27  Score=162.44  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=132.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||+++++++.|+.+++||+.. +++.+.|.+|...|.+++|+||.+.+++|+.|.++.+|++............+.+.|
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV  151 (315)
T ss_pred             cCCceEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence            4799999999999999999997 588999999999999999999999999999999999999986544333333336899


Q ss_pred             eEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecch
Q psy18074         81 THTVWSLD--NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~  157 (197)
                      .|++|+|+  ..+|++++.|+++++||+++.+....+.++...        ++.+++||||..+++|..+ ...+|++..
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~--------v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY--------VNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc--------EEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            99999998  788999999999999999998888888777654        7899999999999987765 779999988


Q ss_pred             hhH
Q psy18074        158 EHR  160 (197)
Q Consensus       158 ~~~  160 (197)
                      .+.
T Consensus       224 ~k~  226 (315)
T KOG0279|consen  224 GKN  226 (315)
T ss_pred             Cce
Confidence            776

>KOG0272|consensus

Probab=99.95  E-value=6.6e-28  Score=172.80  Aligned_cols=170  Identities=14%  Similarity=0.147  Sum_probs=153.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      |+..|++|+.+|.+.+|.... ...+..+.+|.+.+.++.|+|.  +..+++++.||.+++|++.+..++..+ .+|...
T Consensus       186 ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~R  263 (459)
T KOG0272|consen  186 DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLAR  263 (459)
T ss_pred             CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhh
Confidence            788999999999999999987 4778999999999999999996  568999999999999999987777666 678899


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      |..++|+|+|++|++++.|.+-++||+.++..+....+|...        |.+++|+|||..+++|..+ --.||+++..
T Consensus       264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~--------v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg  335 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG--------VFSIAFQPDGSLAATGGLDSLGRVWDLRTG  335 (459)
T ss_pred             heeeeecCCCceeeecccccchhhcccccchhhHhhcccccc--------cceeEecCCCceeeccCccchhheeecccC
Confidence            999999999999999999999999999999888777777665        6899999999999988866 4599999999


Q ss_pred             hHHHHhHhHhhhhhhhcCCCCCC
Q psy18074        159 HRAIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      +.++..+-+.+++-.+.+++++.
T Consensus       336 r~im~L~gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  336 RCIMFLAGHIKEILSVAFSPNGY  358 (459)
T ss_pred             cEEEEecccccceeeEeECCCce
Confidence            99998888888888888888765

>KOG0271|consensus

Probab=99.94  E-value=1.9e-26  Score=163.92  Aligned_cols=144  Identities=19%  Similarity=0.381  Sum_probs=130.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .|..+++|+.|.++++|+.....+++..+.+|+.-|..+.||||+.++++++.|..|++|+.++|+.+..+ .+|...|+
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VY  413 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVY  413 (480)
T ss_pred             CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhccceeE
Confidence            46789999999999999998666889999999999999999999999999999999999999999998887 78999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEee
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYN  154 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~  154 (197)
                      .++|+.|.++|++|+.|.++++||+++.+...-+.+|..+        |.++.|+|||.+++++..+ -+.+|.
T Consensus       414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE--------Vf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE--------VFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce--------EEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999998887777777766        6799999999999988766 446663

>KOG0268|consensus

Probab=99.94  E-value=8.5e-28  Score=169.58  Aligned_cols=194  Identities=56%  Similarity=0.965  Sum_probs=178.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++..|++|+.|.+++.||++....++..+.+|.+.|.+++|||.|+-|++|+.|.+|+||..+.+.....+++.....|.
T Consensus       240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence            67889999999999999999888999999999999999999999999999999999999999999888888788888999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhHH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~  161 (197)
                      ++.|+-|.+|+++|++|+.|++|.....+.+..+...+...+.|.+..-....-.|.-+.||-+.+.|..|+++.+.++.
T Consensus       320 ~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lPk~i~~a~ki~r~  399 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLPKPIKKAQKIKRT  399 (433)
T ss_pred             EEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            99999999999999999999999988777777787777777777776667777889999999999999999999999999


Q ss_pred             HHhHhHhhhhhhhcCCCCCCCCCchhhHhhhhhccC
Q psy18074        162 IRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME  197 (197)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (197)
                      .+.++++++.++++++.+  .+-.++|++.++.+.|
T Consensus       400 ~~~s~~rrea~~~~~~~~--~~y~~~~kk~vv~~~~  433 (433)
T KOG0268|consen  400 VNDSERRREANRRRHSKP--VPYAPERKKHIVGEVE  433 (433)
T ss_pred             HHHHHHHHHHHHhhhcCC--CCcchhhcceeeeecC
Confidence            999999999999999998  7889999999998765

>KOG0286|consensus

Probab=99.94  E-value=1.3e-25  Score=154.53  Aligned_cols=169  Identities=17%  Similarity=0.203  Sum_probs=143.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      |...|++|+.|.+.-+||+++ ++.+..+.+|.+.|.++.++| +++.+++|+.|+..++||++.+.+...| .+|...|
T Consensus       155 dD~~ilT~SGD~TCalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-~ghesDI  232 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-EGHESDI  232 (343)
T ss_pred             CCCceEecCCCceEEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-ccccccc
Confidence            566789999999999999998 688999999999999999999 8999999999999999999999888887 7799999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      ++++|.|+|.-+++|++|++.++||++..+.+..+......      ..|++++||..|++|.+|.++ .+.+|+.-+.+
T Consensus       233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~------~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII------CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc------CCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence            99999999999999999999999999999988888744332      247999999999999886654 89999998877


Q ss_pred             HHHHhHhHhhhhhhhcCCC
Q psy18074        160 RAIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (197)
                      +.-...-++..+.....++
T Consensus       307 ~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  307 RVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             eEEEeeccCCeeEEEEECC
Confidence            6655444433333333333

>KOG0266|consensus

Probab=99.94  E-value=4.5e-25  Score=169.04  Aligned_cols=158  Identities=17%  Similarity=0.272  Sum_probs=136.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .|+.++++|+.|++|++||+...+..++.+.+|...|++++|+|+++.+++|+.|+.|++||++++++...+ .+|...|
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~i  291 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGI  291 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCce
Confidence            378899999999999999995545788999999999999999999999999999999999999999888777 6788999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecch
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASE--KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~  157 (197)
                      .+++|++++++|++++.|+.|++||+.++.  +...+......     . ++.+++|+|++.+++++..+ .+.+|++..
T Consensus       292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-----A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS  365 (456)
T ss_pred             EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC-----C-ceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence            999999999999999999999999999988  34455444432     1 36899999999999987766 899999987


Q ss_pred             hhHHHHhH
Q psy18074        158 EHRAIRSK  165 (197)
Q Consensus       158 ~~~~~~~~  165 (197)
                      .+......
T Consensus       366 ~~~~~~~~  373 (456)
T KOG0266|consen  366 GKSVGTYT  373 (456)
T ss_pred             Ccceeeec
Confidence            76654443

>KOG0286|consensus

Probab=99.92  E-value=2.7e-24  Score=148.16  Aligned_cols=144  Identities=18%  Similarity=0.334  Sum_probs=129.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-ccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v   80 (197)
                      +++.|++|+-|...++||++. +..++.|.+|++.|.+++|.|+|.-|++|+.|+..++||++....+..+.. .-..+|
T Consensus       198 ~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  198 DGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             CCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence            689999999999999999998 688999999999999999999999999999999999999999887777632 223679


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~  154 (197)
                      ++++|+..|++|+.|..|.++.+||.-.++....+.+|+..        |+++..+|||.-+++++-+ .+.||.
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR--------vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR--------VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe--------eEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999988888877765        8999999999999988854 778884

>KOG0279|consensus

Probab=99.92  E-value=5.7e-24  Score=145.63  Aligned_cols=151  Identities=11%  Similarity=0.172  Sum_probs=128.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccC--CCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDM--TSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      |...+++|+.|.+|.+|+.-  +.+...+..+  .+.|.++.|+|+  ...|++++.|+.|++||+++-+....+ .+|.
T Consensus       116 dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~  192 (315)
T KOG0279|consen  116 DNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-IGHS  192 (315)
T ss_pred             CCceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-cccc
Confidence            67789999999999999987  3444444333  678999999998  678999999999999999987766555 6788


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      ..++.+.++|||..+++|+.||.+.+||++.++.++.+....         .|.+++|+|+-.+|+.+....+.||++..
T Consensus       193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~---------~v~sl~fspnrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD---------IVNSLCFSPNRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC---------eEeeEEecCCceeEeeccCCceEEEeccc
Confidence            999999999999999999999999999999999987775443         37999999999999988888999999977


Q ss_pred             hhHHHHh
Q psy18074        158 EHRAIRS  164 (197)
Q Consensus       158 ~~~~~~~  164 (197)
                      .......
T Consensus       264 ~~~v~~l  270 (315)
T KOG0279|consen  264 KAVVEEL  270 (315)
T ss_pred             hhhhhhc
Confidence            6655443

>KOG0284|consensus

Probab=99.92  E-value=8.5e-25  Score=156.48  Aligned_cols=166  Identities=8%  Similarity=0.196  Sum_probs=142.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++..+++|..+|.|+.|+..-  ..+..+.+|. ..|++++|+|+...|++++.||.|+|||.........+ .+|.-.|
T Consensus       149 ~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdV  225 (464)
T KOG0284|consen  149 NGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDV  225 (464)
T ss_pred             CCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCc
Confidence            688999999999999999873  4466666665 89999999999999999999999999999987766665 7888899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      .+++|+|.-.++++++.|+.|++||.+++.++.++..|...        |..+.|+|++++|++++.+ .+.+|+.+..+
T Consensus       226 ksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt--------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  226 KSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT--------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             ceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce--------EEEEEEcCCCCeeEEccCCceEEEEehhHhH
Confidence            99999999999999999999999999999999998888765        6799999999999987765 88999999666


Q ss_pred             HHHHhHhHhhhhhhhcCCC
Q psy18074        160 RAIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (197)
                      ......-++++.....+.+
T Consensus       298 El~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             HHHHhhcchhhheeecccc
Confidence            6666666777776655433

>KOG0266|consensus

Probab=99.92  E-value=1e-23  Score=161.56  Aligned_cols=150  Identities=19%  Similarity=0.302  Sum_probs=133.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC-CCCcccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA-HQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~~~   77 (197)
                      .+|..+++++.++.+++|+... ..  ....+.+|...|.+++|+|++..+++++.|+++++||+ ..+.++..+ .+|.
T Consensus       169 ~~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~  246 (456)
T KOG0266|consen  169 PDGRALAAASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHS  246 (456)
T ss_pred             CCCCeEEEccCCCcEEEeeccc-ccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCC
Confidence            3788999999999999999964 33  56667899999999999999999999999999999999 445666766 5899


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      ..|++++|+|+|+.+++|+.|++|++||+.+++++..+.+|...        |++++|++++++|++++ ++.+.||+..
T Consensus       247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--------is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--------ISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--------eEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            99999999999999999999999999999999999988888765        78999999999999776 5688999998


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ....
T Consensus       319 ~~~~  322 (456)
T KOG0266|consen  319 TGSK  322 (456)
T ss_pred             CCce
Confidence            8773

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=3.3e-23  Score=158.91  Aligned_cols=150  Identities=15%  Similarity=0.264  Sum_probs=122.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      ++++|++|+.|++|++||+...+      .++..+.+|...|.+++|+|++ ..|++++.|+.|++||+.++.....+ .
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-~  165 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-K  165 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-c
Confidence            67899999999999999997522      3567788999999999999985 68999999999999999988766555 5


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-e----cCcc
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-H----RQVP  149 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~----~~~~  149 (197)
                      .|...|.+++|+|+|++|++++.|+.|++||+++++.+..+..+....       ...+.|.+++..+++ +    .+..
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-------~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-------SQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc-------ceEEEEcCCCCeEEEEecCCCCCCe
Confidence            677899999999999999999999999999999998887776665421       235668887666654 3    2457


Q ss_pred             eEEeecchhh
Q psy18074        150 RHIYNAQAEH  159 (197)
Q Consensus       150 ~~i~~~~~~~  159 (197)
                      +.+|+++...
T Consensus       239 VklWDlr~~~  248 (493)
T PTZ00421        239 IMLWDTRKMA  248 (493)
T ss_pred             EEEEeCCCCC
Confidence            8999987543

>KOG0282|consensus

Probab=99.90  E-value=5.5e-24  Score=155.05  Aligned_cols=150  Identities=13%  Similarity=0.228  Sum_probs=133.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .+.+|++++.|+.|+||++...+.+++++.+|..+|.+++|+++|..|++++.|+.+++||+++|.+...+..+  ..++
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~  303 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--KVPT  303 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC--CCce
Confidence            46899999999999999998767899999999999999999999999999999999999999999998888665  5789


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         82 HTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      |+.|+|++ +.+++|+.|+.|+.||.++++.++.+..+.+.        |..+.|-++|+++++.+++ .+.||+.+..-
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~--------i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA--------ILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh--------eeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            99999998 78889999999999999999988877766655        6789999999988876655 89999987654


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       376 ~i  377 (503)
T KOG0282|consen  376 PI  377 (503)
T ss_pred             cc
Confidence            43

>KOG0285|consensus

Probab=99.90  E-value=4.8e-23  Score=145.71  Aligned_cols=152  Identities=12%  Similarity=0.160  Sum_probs=134.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ...|++|+.|+++.|||+.+ ++....+.+|-..|..+++|+...++++++.|+.|+.||+..++.++.+ .+|-+.|.+
T Consensus       163 n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~  240 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYC  240 (460)
T ss_pred             ceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEE
Confidence            46799999999999999998 6888889999999999999999999999999999999999999888776 678899999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceeeeecCcceEEeecchhhHH
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~i~~~~~~~~~  161 (197)
                      ++.+|.-..|++|+.|.+++|||+++...+..+.+|...        |..+.+.| |.+.+.++.+..+.+|+++..+..
T Consensus       241 L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--------V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  241 LDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--------VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             EeccccceeEEecCCcceEEEeeecccceEEEecCCCCc--------ceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence            999999999999999999999999999999999888765        67888887 566665666679999999988765


Q ss_pred             HHh
Q psy18074        162 IRS  164 (197)
Q Consensus       162 ~~~  164 (197)
                      ...
T Consensus       313 ~tl  315 (460)
T KOG0285|consen  313 ITL  315 (460)
T ss_pred             Eee
Confidence            443

>KOG0295|consensus

Probab=99.90  E-value=1.1e-22  Score=143.82  Aligned_cols=144  Identities=13%  Similarity=0.263  Sum_probs=127.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC----------C-----CEEEEEeCCCcEEEEECCC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT----------G-----REFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~----------~-----~~l~~~~~d~~v~i~d~~~   65 (197)
                      .||.++++++.|.+|++|-..+ .++...+.+|+.+|-+++|.|.          +     ..+++++.|+.|++||+.+
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             CCeeEEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            4899999999999999999987 5677888999999999999763          2     4788899999999999999


Q ss_pred             CcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         66 GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        66 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +.++..+ .+|.+.|..++|+|.|+||+++.+|+++++||+.+++++..+..++.-        ++++.|+.+.-++++|
T Consensus       324 g~cL~tL-~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf--------vt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  324 GMCLFTL-VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF--------VTSLDFHKTAPYVVTG  394 (406)
T ss_pred             CeEEEEE-ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce--------eEEEecCCCCceEEec
Confidence            9988776 789999999999999999999999999999999999999988866543        7899999988899988


Q ss_pred             cCc-ceEEee
Q psy18074        146 RQV-PRHIYN  154 (197)
Q Consensus       146 ~~~-~~~i~~  154 (197)
                      +-+ ++.+|.
T Consensus       395 sVdqt~KvwE  404 (406)
T KOG0295|consen  395 SVDQTVKVWE  404 (406)
T ss_pred             cccceeeeee
Confidence            754 778885

>KOG0315|consensus

Probab=99.90  E-value=2.3e-22  Score=136.05  Aligned_cols=154  Identities=14%  Similarity=0.184  Sum_probs=122.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +||+.+++|+.||+++|||++. -...+.+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.......|
T Consensus        93 ~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i  170 (311)
T KOG0315|consen   93 CDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI  170 (311)
T ss_pred             ecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence            4789999999999999999996 2444444 6789999999999999999999999999999998866555534445789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      .++...|||++++.+...|+.++|++.+.+....+.+.+.  +..++.-+..+.+|||+++||+++ +..+.||+....
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k--~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK--FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh--eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            9999999999999999999999999986544333322211  222333356788999999999655 569999998765

>KOG0283|consensus

Probab=99.90  E-value=5.4e-24  Score=163.72  Aligned_cols=150  Identities=15%  Similarity=0.253  Sum_probs=124.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccC----------------------------------------------------------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQ----------------------------------------------------------   22 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~----------------------------------------------------------   22 (197)
                      .||+|||+|+.|+.|+||.+..                                                          
T Consensus       277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~  356 (712)
T KOG0283|consen  277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV  356 (712)
T ss_pred             CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence            4899999999999999998543                                                          


Q ss_pred             -CCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEcc-CCCEEEEEeCCCc
Q psy18074         23 -LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL-DNKFVISASDEMN  100 (197)
Q Consensus        23 -~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~  100 (197)
                       ..+|+..+.+|.+.|.++.||. ..+|++++.|.+|+||++....++.+|  .|...|+||+|+| |.+|+++|+.||.
T Consensus       357 f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  357 FSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             ccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccCCCcEeecccccc
Confidence             0024445788999999999995 678899999999999999999999997  6779999999999 7899999999999


Q ss_pred             EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhhHHH
Q psy18074        101 LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHRAI  162 (197)
Q Consensus       101 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~~~  162 (197)
                      ++||++...+...-...+.         .|+.++|.|||+..+.|.- +.+.+|+....+-+.
T Consensus       434 vRiWsI~d~~Vv~W~Dl~~---------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  434 VRLWSISDKKVVDWNDLRD---------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             eEEeecCcCeeEeehhhhh---------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence            9999998766554333322         3799999999999887764 588999987665433

>KOG0273|consensus

Probab=99.90  E-value=2.1e-22  Score=146.63  Aligned_cols=148  Identities=16%  Similarity=0.252  Sum_probs=129.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..-|++.+.|+.|++|.+.. ..|+..+.+|.++|.++.|+|.|..|++++.|++++||..........+ ..|...|..
T Consensus       329 ~~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l-~~Hskei~t  406 (524)
T KOG0273|consen  329 NDEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL-QAHSKEIYT  406 (524)
T ss_pred             CceEeecCCCceEEEEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh-hhhccceee
Confidence            45688999999999999986 6899999999999999999999999999999999999998877766665 567788999


Q ss_pred             EEEccCCC---------EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEE
Q psy18074         83 TVWSLDNK---------FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHI  152 (197)
Q Consensus        83 v~~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i  152 (197)
                      +.|+|+|.         .+++++.|++|++||+..+.++..+..|...        |.+++|+|+|+++|+|+-+ .+.|
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p--------VysvafS~~g~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP--------VYSVAFSPNGRYLASGSLDGCVHI  478 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc--------eEEEEecCCCcEEEecCCCCeeEe
Confidence            99998654         6789999999999999999999988766654        8899999999999998855 7899


Q ss_pred             eecchhhH
Q psy18074        153 YNAQAEHR  160 (197)
Q Consensus       153 ~~~~~~~~  160 (197)
                      |.....+.
T Consensus       479 ws~~~~~l  486 (524)
T KOG0273|consen  479 WSTKTGKL  486 (524)
T ss_pred             ccccchhe
Confidence            98765543

>KOG0291|consensus

Probab=99.90  E-value=8.5e-23  Score=156.05  Aligned_cols=168  Identities=11%  Similarity=0.190  Sum_probs=140.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||.++|+|+.||+|++||... +-+..++..|.+.|+.+.|+..|..+++++-||+|+.||+...+..+++..+....-
T Consensus       360 pDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf  438 (893)
T KOG0291|consen  360 PDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF  438 (893)
T ss_pred             CCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee
Confidence            4899999999999999999987 688999999999999999999999999999999999999999988888866655667


Q ss_pred             eEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEM-NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      .|++..|.|..+..|+.|. .|++|++.+|+.+..+.+|+..        |.+++|+|++..|++++- ..+.+|+.-..
T Consensus       439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP--------Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP--------VSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc--------ceeeEEccccCeEEeccccceEEEEEeecc
Confidence            8889999999988888775 5999999999999888887765        789999999999998774 59999998766


Q ss_pred             hHHHHhHhHhhhhhhhcCC
Q psy18074        159 HRAIRSKQKRKESNKRTHS  177 (197)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~  177 (197)
                      ....+.-....+.-..++.
T Consensus       511 ~~~vEtl~i~sdvl~vsfr  529 (893)
T KOG0291|consen  511 SGTVETLEIRSDVLAVSFR  529 (893)
T ss_pred             CceeeeEeeccceeEEEEc
Confidence            4443333333333333333

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=1.1e-21  Score=151.77  Aligned_cols=152  Identities=8%  Similarity=0.145  Sum_probs=118.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-------CceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-------SPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      ++.+|++|+.|+.|++||+...+       .++..+.+|...|.+++|+|++..+ ++++.|+.|++||++++.....+ 
T Consensus        86 ~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i-  164 (568)
T PTZ00420         86 FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI-  164 (568)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence            36799999999999999997522       2344678899999999999998764 68899999999999988765544 


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-Cc----
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QV----  148 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~----  148 (197)
                       .|...|.+++|+|+|++|++++.|+.|++||+++++.+..+.+|......   ..+....|++++.+|++++ +.    
T Consensus       165 -~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s---~~v~~~~fs~d~~~IlTtG~d~~~~R  240 (568)
T PTZ00420        165 -NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT---KNIWIDGLGGDDNYILSTGFSKNNMR  240 (568)
T ss_pred             -ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee---EEEEeeeEcCCCCEEEEEEcCCCCcc
Confidence             24478999999999999999999999999999999988888776643110   0122334678888777544 32    


Q ss_pred             ceEEeecchh
Q psy18074        149 PRHIYNAQAE  158 (197)
Q Consensus       149 ~~~i~~~~~~  158 (197)
                      .+.||+++..
T Consensus       241 ~VkLWDlr~~  250 (568)
T PTZ00420        241 EMKLWDLKNT  250 (568)
T ss_pred             EEEEEECCCC
Confidence            5899998754

>KOG0315|consensus

Probab=99.90  E-value=2.6e-22  Score=135.79  Aligned_cols=147  Identities=18%  Similarity=0.222  Sum_probs=123.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      |+..||+|+. ..|++||+++.. .|+..+.+|...|+++.|.-+|+++++|+.||+++|||++...+.+.+  .|..+|
T Consensus        51 dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spV  127 (311)
T KOG0315|consen   51 DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPV  127 (311)
T ss_pred             CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCc
Confidence            5667777764 579999998644 489999999999999999999999999999999999999997666665  455899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      +++..+|+...|++|..+|.|++||+....+...+.+....       .+.++...|||.+++... .+.+.+|++...
T Consensus       128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~-------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~  199 (311)
T KOG0315|consen  128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT-------SIQSLTVMPDGSMLAAANNKGNCYVWRLLNH  199 (311)
T ss_pred             ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc-------ceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence            99999999999999999999999999877666555444332       368999999999998554 569999998763

>KOG0273|consensus

Probab=99.90  E-value=2.5e-22  Score=146.23  Aligned_cols=143  Identities=11%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC---------CEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG---------REFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      |.+|++++.|++++||.+.. ......+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+ 
T Consensus       371 g~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-  448 (524)
T KOG0273|consen  371 GSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-  448 (524)
T ss_pred             CceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-
Confidence            78999999999999999876 57788899999999999999964         37899999999999999999998887 


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCcceEE
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHI  152 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i  152 (197)
                      ..|..+|++++|+|+|+|+|+|+.||.|.+|+..+++..+.+.+...         |..++|+.+|.+|. +.+++++.+
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---------Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---------IFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---------EEEEEEcCCCCEEEEEecCCCceE
Confidence            66889999999999999999999999999999999998887766554         68999999988887 555667777


Q ss_pred             eecc
Q psy18074        153 YNAQ  156 (197)
Q Consensus       153 ~~~~  156 (197)
                      .+++
T Consensus       520 ldlr  523 (524)
T KOG0273|consen  520 LDLR  523 (524)
T ss_pred             EEec
Confidence            6654

>KOG0285|consensus

Probab=99.89  E-value=8e-23  Score=144.60  Aligned_cols=154  Identities=17%  Similarity=0.233  Sum_probs=138.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      .|+.+++.|+.|+.||+.. .+.++.+.+|-+.|.+++.+|.-..|++|+.|..+++||+++...+..+ .+|...|.++
T Consensus       206 pYlFs~gedk~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V  283 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASV  283 (460)
T ss_pred             ceEEEecCCCeeEEEechh-hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeE
Confidence            4788999999999999987 6889999999999999999999999999999999999999998777766 7899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhHHHH
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIR  163 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~~~  163 (197)
                      .+.|....+++|+.|++|++||++.|+...++..+...        +.+++.+|.-..+|+++.+.+.-|++........
T Consensus       284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkks--------vral~lhP~e~~fASas~dnik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKS--------VRALCLHPKENLFASASPDNIKQWKLPEGEFLQN  355 (460)
T ss_pred             EeecCCCceEEecCCceEEEeeeccCceeEeeecccce--------eeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence            99998888999999999999999999998888777665        6899999999999999999999999987776655


Q ss_pred             hHhH
Q psy18074        164 SKQK  167 (197)
Q Consensus       164 ~~~~  167 (197)
                      ...+
T Consensus       356 lsgh  359 (460)
T KOG0285|consen  356 LSGH  359 (460)
T ss_pred             cccc
Confidence            4333

>KOG0319|consensus

Probab=99.89  E-value=3.9e-22  Score=151.95  Aligned_cols=149  Identities=13%  Similarity=0.162  Sum_probs=134.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +..++|+|+.|.+.++|++.. .....++.+|...|+++.|+|..+.++|+|.|++|+||.+.+..++.++ .+|...|.
T Consensus       474 ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVl  551 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVL  551 (775)
T ss_pred             CCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeE
Confidence            568999999999999999995 6788999999999999999999999999999999999999999999988 77999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~  160 (197)
                      .+.|-.+|+.|++++.||-|++|++.++.+..++..|...        |..++.+|...+++++..+ .+.+|.-.....
T Consensus       552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr--------vWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~  623 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR--------VWALSVSPLLDMFVTGGGDGRIIFWKDVTEEE  623 (775)
T ss_pred             eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce--------eEEEeecCccceeEecCCCeEEEEeecCcHHH
Confidence            9999999999999999999999999999999999888765        7899999998888876654 678887654433

>KOG0275|consensus

Probab=99.89  E-value=3.1e-23  Score=145.41  Aligned_cols=156  Identities=12%  Similarity=0.141  Sum_probs=135.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      .||+++++|+-||.|.+||..++.       +....+.-+..+|.|+.||.|...+++|+.||.|++|.+.+|.+++.+.
T Consensus       223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            489999999999999999986521       1223344567899999999999999999999999999999999999998


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceEE
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHI  152 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i  152 (197)
                      ..|...|+|+.|+.|+..+++++.|-++++.-+.+|+.+..+.+|...        |+...|++||..|.+ ++++.+.+
T Consensus       303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--------vn~a~ft~dG~~iisaSsDgtvkv  374 (508)
T KOG0275|consen  303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--------VNEATFTDDGHHIISASSDGTVKV  374 (508)
T ss_pred             hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--------ccceEEcCCCCeEEEecCCccEEE
Confidence            889999999999999999999999999999999999999988888764        788999999998885 45669999


Q ss_pred             eecchhhHHHHh
Q psy18074        153 YNAQAEHRAIRS  164 (197)
Q Consensus       153 ~~~~~~~~~~~~  164 (197)
                      |+....+.....
T Consensus       375 W~~KtteC~~Tf  386 (508)
T KOG0275|consen  375 WHGKTTECLSTF  386 (508)
T ss_pred             ecCcchhhhhhc
Confidence            998776655444

>KOG0645|consensus

Probab=99.89  E-value=2.4e-21  Score=132.43  Aligned_cols=147  Identities=14%  Similarity=0.183  Sum_probs=123.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce--eecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI--YHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~   77 (197)
                      +.|++|++|+.|.++.||.-... .+++..+.+|+..|.+++|+++|.+|++++.|..|.+|.+..+.....  ...+|.
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            36899999999999999987532 267888999999999999999999999999999999999985543222  247899


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCC---CceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEe
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHA---SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIY  153 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~  153 (197)
                      ..|..+.|+|...+|++++.|++|++|+-..   -.+.+++.+++..        |.+++|++.|.+|++++++ .+.||
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T--------VW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT--------VWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce--------EEEEEecCCCceEEEecCCcceEee
Confidence            9999999999999999999999999998662   2456677766654        7899999999888877655 88999


Q ss_pred             ec
Q psy18074        154 NA  155 (197)
Q Consensus       154 ~~  155 (197)
                      ..
T Consensus       223 ~~  224 (312)
T KOG0645|consen  223 RL  224 (312)
T ss_pred             ee
Confidence            84

>KOG0284|consensus

Probab=99.89  E-value=8.8e-23  Score=146.25  Aligned_cols=171  Identities=9%  Similarity=0.153  Sum_probs=140.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||.-|++|+..|.+.+|+... ......++.|+.+|+++.|++++.++++|+.+|.|++|+..-... ..+...|...|
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaI  183 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAI  183 (464)
T ss_pred             CCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhh
Confidence            3789999999999999999864 233445679999999999999999999999999999999876543 33335555899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      ++++|+|++..++++++||.|+|||....+....+.+|.        ..|.+++|+|....|++++++ .+.+|+.+...
T Consensus       184 RdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg--------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  184 RDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG--------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             heeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC--------CCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            999999999999999999999999998766655554444        458999999999999987755 88999999888


Q ss_pred             HHHHhHhHhhhhhhhcCCCCCC
Q psy18074        160 RAIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      .......++.-.-..++.+.+.
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N  277 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGN  277 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCC
Confidence            8877777766666666666553

>KOG0310|consensus

Probab=99.88  E-value=2.9e-22  Score=146.23  Aligned_cols=167  Identities=13%  Similarity=0.147  Sum_probs=133.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .||.++++|...|.|++||+.+ ...++.+.+|+.++..+.|+|++ +.+++|+.|+.+++||+.+... .....+|...
T Consensus        78 ~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDY  155 (487)
T KOG0310|consen   78 SDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDY  155 (487)
T ss_pred             cCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcce
Confidence            4899999999999999999654 45678899999999999999965 5677899999999999999885 4345789999


Q ss_pred             eeEEEEccC-CCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         80 VTHTVWSLD-NKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        80 v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      |.|.+|+|- +..+++|+.||.|++||++.. ..+..+....         +|..+.+-|.|..||++....+.+|++..
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~---------pVe~vl~lpsgs~iasAgGn~vkVWDl~~  226 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC---------PVESVLALPSGSLIASAGGNSVKVWDLTT  226 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC---------ceeeEEEcCCCCEEEEcCCCeEEEEEecC
Confidence            999999996 457789999999999999976 4444554333         37899999999999999999999999985


Q ss_pred             hhH-HHHhHhHhhhhhhhcCCC
Q psy18074        158 EHR-AIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       158 ~~~-~~~~~~~~~~~~~~~~~~  178 (197)
                      ..+ ...+..+.|.........
T Consensus       227 G~qll~~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  227 GGQLLTSMFNHNKTVTCLRLAS  248 (487)
T ss_pred             CceehhhhhcccceEEEEEeec
Confidence            544 333343555555444443

>KOG0265|consensus

Probab=99.87  E-value=3.3e-21  Score=133.39  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=123.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||.+||+|+.|..|.+|+.....+-...+.+|.+.|..+.|.++++.+++++.|..|+.||+++|+....+ .+|...|
T Consensus        57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~v  135 (338)
T KOG0265|consen   57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFV  135 (338)
T ss_pred             CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-cccccee
Confidence            478999999999999999976434556678899999999999999999999999999999999999987765 6787888


Q ss_pred             eEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      ++++-+.-|..++ ++++|+++++||.++..+++++.....         ++.+.|..++..+.++. ++.+.+|++++.
T Consensus       136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq---------ltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ---------LTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             eecCccccCCeEEEecCCCceEEEEeecccchhhcccccee---------EEEEEecccccceeeccccCceeeeccccC
Confidence            8887544565554 889999999999999888877754433         47888988776666554 568899998765


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      .-
T Consensus       207 d~  208 (338)
T KOG0265|consen  207 DG  208 (338)
T ss_pred             cc
Confidence            44

>KOG0276|consensus

Probab=99.87  E-value=1.7e-21  Score=146.42  Aligned_cols=161  Identities=12%  Similarity=0.194  Sum_probs=138.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ..++++++.|-.|++||-...-.+.+.+.+|..-|.+++|+| |.+.+++++-|++|++|.+.+..+..++ .+|...|+
T Consensus       109 ~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl-~gHekGVN  187 (794)
T KOG0276|consen  109 LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL-EGHEKGVN  187 (794)
T ss_pred             CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee-eccccCcc
Confidence            357889999999999999875578899999999999999999 5679999999999999999988777666 58999999


Q ss_pred             EEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         82 HTVWSLDN--KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      |++|-+.|  .||++|++|..++|||..+..++.++.+|...        |+.++|+|.--.|++|+.+ .+.||+....
T Consensus       188 ~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N--------vs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  188 CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN--------VSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             eEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc--------ceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            99998754  69999999999999999999999999988775        7899999999999987754 8999999888


Q ss_pred             hHHHHhHhHhhhhh
Q psy18074        159 HRAIRSKQKRKESN  172 (197)
Q Consensus       159 ~~~~~~~~~~~~~~  172 (197)
                      +.+......-....
T Consensus       260 ~lE~tLn~gleRvW  273 (794)
T KOG0276|consen  260 KLEKTLNYGLERVW  273 (794)
T ss_pred             ehhhhhhcCCceEE
Confidence            77766654443333

>PTZ00420 coronin; Provisional

Probab=99.87  E-value=1.5e-20  Score=145.42  Aligned_cols=142  Identities=11%  Similarity=0.147  Sum_probs=113.8

Q ss_pred             EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcc-c------ceeecccccce
Q psy18074          9 ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHS-R------DIYHTKRMQHV   80 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~-~------~~~~~~~~~~v   80 (197)
                      |+.++.|++|+... ..++..+.+|.+.|.+++|+|+ +..|++|+.|+.|++||+.++.. .      .....+|...|
T Consensus        50 GG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            55677889998865 4567788999999999999996 78999999999999999986421 1      11235688899


Q ss_pred             eEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSLDNKFV-ISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      .+++|+|++..+ ++++.|+.|++||+.+++....+...         ..|.+++|+|+|.+|+++. +..+.||+.+..
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP---------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC---------CcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            999999998765 68899999999999988876555322         1368999999999999665 568999999866


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      +.
T Consensus       200 ~~  201 (568)
T PTZ00420        200 EI  201 (568)
T ss_pred             cE
Confidence            44

>KOG0319|consensus

Probab=99.86  E-value=3.7e-21  Score=146.70  Aligned_cols=163  Identities=10%  Similarity=0.181  Sum_probs=137.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC--Cc--e----eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN--SP--L----NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~--~~--~----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      ..+|++++.|.++++|++....  ..  .    .....|...|.+++.+|+...++|||.|.+.++|++.++....++ .
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL-s  502 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL-S  502 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe-e
Confidence            4689999999999999997511  11  1    123568999999999999999999999999999999988777776 8


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCcceEEe
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIY  153 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~  153 (197)
                      +|...|.+|.|+|.++.+++++.|++|++|.+.+..++.++.+|...        |....|-.+|..|+ +++++-+.+|
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a--------Vlra~F~~~~~qliS~~adGliKlW  574 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA--------VLRASFIRNGKQLISAGADGLIKLW  574 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce--------eEeeeeeeCCcEEEeccCCCcEEEE
Confidence            89999999999999999999999999999999999999999999876        45777877666555 6677889999


Q ss_pred             ecchhhHHHHhHhHhhhhhhh
Q psy18074        154 NAQAEHRAIRSKQKRKESNKR  174 (197)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~  174 (197)
                      +......++....+.......
T Consensus       575 nikt~eC~~tlD~H~DrvWaL  595 (775)
T KOG0319|consen  575 NIKTNECEMTLDAHNDRVWAL  595 (775)
T ss_pred             eccchhhhhhhhhccceeEEE
Confidence            999888888777665554433

>KOG0295|consensus

Probab=99.86  E-value=8.3e-21  Score=134.45  Aligned_cols=153  Identities=10%  Similarity=0.151  Sum_probs=134.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      -|.++++++.|.+|++|++.+ +.++..+.+|...|..+..+-||..+++++.|.+|++|-+.++.+...+ ..|.-.|-
T Consensus       204 ~gd~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vE  281 (406)
T KOG0295|consen  204 LGDHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVE  281 (406)
T ss_pred             cCCeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceE
Confidence            367899999999999999998 6889999999999999999999999999999999999999999776665 66777889


Q ss_pred             EEEEccC----------C-----CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         82 HTVWSLD----------N-----KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        82 ~v~~~~~----------~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      +++|-|.          +     +++++++.|++|++||+.++.++.++.++..        +|..++|+|.|++|++..
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn--------wVr~~af~p~Gkyi~Sca  353 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN--------WVRGVAFSPGGKYILSCA  353 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc--------eeeeeEEcCCCeEEEEEe
Confidence            9998763          2     4888999999999999999999988877764        589999999999999877


Q ss_pred             Cc-ceEEeecchhhHHHHh
Q psy18074        147 QV-PRHIYNAQAEHRAIRS  164 (197)
Q Consensus       147 ~~-~~~i~~~~~~~~~~~~  164 (197)
                      ++ .+.+|++...+.+...
T Consensus       354 DDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  354 DDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             cCCcEEEEEeccceeeecc
Confidence            66 8999999877666544

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=2.8e-20  Score=142.91  Aligned_cols=149  Identities=9%  Similarity=0.091  Sum_probs=114.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCC---------CCc---eeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL---------NSP---LNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~---------~~~---~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~   68 (197)
                      |+..+++++.+..+..|+....         ++.   ...+.+|.+.|.+++|+| ++..|++++.|+.|++||+.++..
T Consensus        31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~  110 (493)
T PTZ00421         31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL  110 (493)
T ss_pred             CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc
Confidence            3445566665665666654311         111   124678999999999999 788999999999999999976532


Q ss_pred             -------cceeecccccceeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         69 -------RDIYHTKRMQHVTHTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        69 -------~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                             +.. ..+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..+..+..        .|.+++|+|+|.
T Consensus       111 ~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--------~V~sla~spdG~  181 (493)
T PTZ00421        111 TQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--------QITSLEWNLDGS  181 (493)
T ss_pred             ccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--------ceEEEEEECCCC
Confidence                   222 36788999999999985 6899999999999999999887777665544        378999999999


Q ss_pred             eeeeecC-cceEEeecchhh
Q psy18074        141 RIARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus       141 ~l~~~~~-~~~~i~~~~~~~  159 (197)
                      .|++++. ..+.||+.+..+
T Consensus       182 lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        182 LLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             EEEEecCCCEEEEEECCCCc
Confidence            9987664 588999987654

>KOG0302|consensus

Probab=99.86  E-value=2.8e-21  Score=137.45  Aligned_cols=176  Identities=15%  Similarity=0.232  Sum_probs=128.1

Q ss_pred             EEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcc-cceeeccccccee
Q psy18074          6 FTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHS-RDIYHTKRMQHVT   81 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~v~   81 (197)
                      +++|.--+.|++|...+..  --...+.+|...|-.++|||. ...|++|+.||.|+|||++.+.. ...+...|.+.|+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            5666666789999887622  112346679999999999996 45789999999999999998833 2233467889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCC---CceeeeeccccccccccccccceecccCc--ccceeeeecCcceEEeecc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHA---SEKLGYVNNKQRQALDYSESLKQKYAHHP--QIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~i~~~~  156 (197)
                      .++|+..-.+|++|++||+++|||+++   ++++..+.        +|..+|+++.|+|  ++.+.++|.+..+.||++.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk--------~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK--------YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE--------eccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            999999888999999999999999985   34444444        4455689999998  4455567888899999998


Q ss_pred             hhhHHHHhHhHhhhhhhhcCCCCCCCCCchhhHhhh
Q psy18074        157 AEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAV  192 (197)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (197)
                      -...+....+...+.  . ..-|-+..|...-++.+
T Consensus       379 vE~D~ee~~~~a~~~--L-~dlPpQLLFVHqGQke~  411 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEG--L-QDLPPQLLFVHQGQKEV  411 (440)
T ss_pred             ccCChhhhccccccc--h-hcCCceeEEEecchhHh
Confidence            776655443333332  1 13445556666555543

>KOG0291|consensus

Probab=99.86  E-value=1e-20  Score=144.84  Aligned_cols=170  Identities=14%  Similarity=0.177  Sum_probs=141.2

Q ss_pred             ccEEEEEcC-CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANE-DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      |..+|.|+. -|++-+|+.+. ..-+...++|...+.+++++|||+++++|+.||.|++||..+|-|..++ ..|.+.|+
T Consensus       319 GDWiA~g~~klgQLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt  396 (893)
T KOG0291|consen  319 GDWIAFGCSKLGQLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVT  396 (893)
T ss_pred             CCEEEEcCCccceEEEEEeec-cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceE
Confidence            556666654 37899999986 4556667899999999999999999999999999999999999998888 77899999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc--ceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV--PRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~~~~~~  159 (197)
                      .+.|+..|+.+++++.||+|+.||+..+....++....+..+       .|++..|.|..+..|..+  .+.+|....++
T Consensus       397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf-------scvavD~sGelV~AG~~d~F~IfvWS~qTGq  469 (893)
T KOG0291|consen  397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF-------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ  469 (893)
T ss_pred             EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee-------eEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence            999999999999999999999999999999999988877655       789999999999887755  67899988877


Q ss_pred             HHHHhHhHhhhhhhhcCCCCCC
Q psy18074        160 RAIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      ......-++-......+++.++
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGS  491 (893)
T ss_pred             eeehhcCCCCcceeeEEccccC
Confidence            6655555554454444444443

>KOG0292|consensus

Probab=99.86  E-value=6.6e-21  Score=148.28  Aligned_cols=146  Identities=15%  Similarity=0.256  Sum_probs=132.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ..++++-.+|.|.+||.+- +..+..|.+|+++|.+++|+|++..|++|+.|-.|++|+..+.+++..+ .+|...|..+
T Consensus        22 PwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~   99 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTV   99 (1202)
T ss_pred             CEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEe
Confidence            3577888899999999986 7889999999999999999999999999999999999999999988777 7899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .|++.-.+++++++|-+|+||+..+++++..+++|...        |.|..|+|....|++++ +..+.+|+....+
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY--------VMcAqFhptEDlIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY--------VMCAQFHPTEDLIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE--------EEeeccCCccceEEEecccceEEEEeecchh
Confidence            99999999999999999999999999999999988775        67999999888888666 6699999986543

>KOG0269|consensus

Probab=99.86  E-value=6.9e-21  Score=145.95  Aligned_cols=151  Identities=13%  Similarity=0.231  Sum_probs=119.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++++|++|+.||+|++||++. ......+.+....|..++|+|. +..|+++...|.|.+||++...........|.++|
T Consensus       145 ep~iliSGSQDg~vK~~DlR~-~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV  223 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRS-KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV  223 (839)
T ss_pred             CccEEEecCCCceEEEEeeec-ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence            678999999999999999996 4556666677788999999994 67899999999999999998765444457899999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeec---CcceEEeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR---QVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~---~~~~~i~~~~  156 (197)
                      .|+.|+|++.+||+|+.|++|+|||..+++......-+..       +++..+.|-|.- ..||+++   +..+.||+++
T Consensus       224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             EEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            9999999999999999999999999976544322222222       236889999855 4555443   4478999998


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      +.-.
T Consensus       297 RPYI  300 (839)
T KOG0269|consen  297 RPYI  300 (839)
T ss_pred             cccc
Confidence            7643

>KOG0289|consensus

Probab=99.85  E-value=2.5e-20  Score=134.79  Aligned_cols=152  Identities=9%  Similarity=0.106  Sum_probs=130.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-ccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~   82 (197)
                      ..+++++.|..|++|.... .........|+++|+.+..+|.|.+|++++.|++..+.|++++..+..... ...-.+++
T Consensus       274 ~~v~~aSad~~i~vws~~~-~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts  352 (506)
T KOG0289|consen  274 DTVITASADEIIRVWSVPL-SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS  352 (506)
T ss_pred             hheeecCCcceEEeecccc-ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence            4567889999999999876 345666778999999999999999999999999999999999988766522 22245899


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcc-eEEeecchhhHH
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP-RHIYNAQAEHRA  161 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~i~~~~~~~~~  161 (197)
                      .+|+|||..+.+|..||.+++||+.++.....|.+|...        |..++|+.+|.+|++..++. +.+|++++.+..
T Consensus       353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~--------vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP--------VKAISFSENGYWLATAADDGSVKLWDLRKLKNF  424 (506)
T ss_pred             eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc--------eeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence            999999999999999999999999999888888887664        79999999999999887774 999999988865


Q ss_pred             HHh
Q psy18074        162 IRS  164 (197)
Q Consensus       162 ~~~  164 (197)
                      ...
T Consensus       425 kt~  427 (506)
T KOG0289|consen  425 KTI  427 (506)
T ss_pred             cee
Confidence            544

>KOG0316|consensus

Probab=99.85  E-value=1.7e-20  Score=126.23  Aligned_cols=160  Identities=11%  Similarity=0.168  Sum_probs=130.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ||++.++++.|.+|++|++.. +..++.+.+|...|..++.+.|...|++++.|..+.+||+.+|+..+.+ .+|...|+
T Consensus        28 dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVN  105 (307)
T KOG0316|consen   28 DGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVN  105 (307)
T ss_pred             CCCEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceee
Confidence            799999999999999999976 6889999999999999999999999999999999999999999988887 78999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccccc------------------------------ccccccccc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHAS--EKLGYVNNKQR------------------------------QALDYSESL  129 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~------------------------------~~~~~~~~~  129 (197)
                      .++|+-+...+++|+.|..+++||-++.  ++++.+.....                              ....+...+
T Consensus       106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~p  185 (307)
T KOG0316|consen  106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP  185 (307)
T ss_pred             EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCc
Confidence            9999999999999999999999998753  34443321110                              011222458


Q ss_pred             ceecccCcccceeeeec-CcceEEeecchhhHHHH
Q psy18074        130 KQKYAHHPQIRRIARHR-QVPRHIYNAQAEHRAIR  163 (197)
Q Consensus       130 v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~~~~  163 (197)
                      |++++|++|++....+. +..+.+.+-...+.-..
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence            99999999998776544 55778887666554433

>KOG0318|consensus

Probab=99.85  E-value=6.1e-20  Score=135.60  Aligned_cols=161  Identities=12%  Similarity=0.202  Sum_probs=133.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee--ecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~~v   80 (197)
                      +..+++|+.|+.|-+|.-.. .+-...+..|...|.++.|+|||+++++++.||++++||-.+|+.+..+  ...|.+.|
T Consensus       160 PfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI  238 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI  238 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence            45789999999999998765 3556677889999999999999999999999999999999999987776  34788999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc-----------------------------------cccccc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ-----------------------------------RQALDY  125 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------------------~~~~~~  125 (197)
                      ..++|+||++.+++++.|.++++||+.+...+.++....                                   ...+.+
T Consensus       239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G  318 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG  318 (603)
T ss_pred             EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence            999999999999999999999999998776665553221                                   123445


Q ss_pred             ccccceecccCcccceeeeecCc-ceEEeecchhhHHHHh
Q psy18074        126 SESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHRAIRS  164 (197)
Q Consensus       126 ~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~~~~  164 (197)
                      |.-.|+++..+|++++|.+++.+ -+.-|+........+.
T Consensus       319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~  358 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA  358 (603)
T ss_pred             cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence            56689999999999999987755 7788998877665443

>KOG0645|consensus

Probab=99.85  E-value=1.2e-19  Score=124.11  Aligned_cols=146  Identities=13%  Similarity=0.295  Sum_probs=117.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC--Cceeec-ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN--SPLNVH-KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      |.+||+++.|..|++|+.....  .+...+ .+|...|.+++|+|.|++|++++.|.++.||.-..++..... ..+|.+
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            5699999999999999997412  222223 468899999999999999999999999999988766543322 478999


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeccccccccccccccceecccCcccceeeee-cCcceEEee
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYN  154 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~  154 (197)
                      .|.+++|+++|++||+++.|..|-+|.+..+..   ...+++|..        .|..+.|+|...+|+++ .++.+.+|.
T Consensus       107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq--------DVK~V~WHPt~dlL~S~SYDnTIk~~~  178 (312)
T KOG0645|consen  107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ--------DVKHVIWHPTEDLLFSCSYDNTIKVYR  178 (312)
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc--------cccEEEEcCCcceeEEeccCCeEEEEe
Confidence            999999999999999999999999999875443   444555544        37889999988888854 467899998


Q ss_pred             cc
Q psy18074        155 AQ  156 (197)
Q Consensus       155 ~~  156 (197)
                      ..
T Consensus       179 ~~  180 (312)
T KOG0645|consen  179 DE  180 (312)
T ss_pred             ec
Confidence            76

>KOG0306|consensus

Probab=99.85  E-value=1.5e-20  Score=143.82  Aligned_cols=148  Identities=13%  Similarity=0.193  Sum_probs=134.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||.++|++-.|.++++|-+++. +....+.+|.-||.|+..|||+..++||+.|.+|++|-+.-|.|...+ ..|...|
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSv  595 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSV  595 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCce
Confidence            48999999999999999999874 556677899999999999999999999999999999999999998887 5688999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      .++.|-|....+.+++.|+.|+-||-..-..+..+.+|...        |++++.+|+|.+++++++ .++.+|.....
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e--------v~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE--------VWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe--------eeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            99999999888999999999999999988889999888876        789999999999998877 49999998764

>KOG0277|consensus

Probab=99.85  E-value=3.6e-20  Score=125.79  Aligned_cols=150  Identities=17%  Similarity=0.245  Sum_probs=124.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .+++++++.||.+++||+.....|+..++.|...|.++.|++ ++..+++++-|++|++|+..-+..+.++ .+|..-|.
T Consensus        73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy  151 (311)
T KOG0277|consen   73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIY  151 (311)
T ss_pred             cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEE
Confidence            467888999999999998866789999999999999999999 4567788899999999999888777776 77989999


Q ss_pred             EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceeeeec-CcceEEeecchh
Q psy18074         82 HTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      ...|+|. .+.+++++.|+.+++||++.......+..|..+        +.++.|+. +-+.++++. +..+.+|+++..
T Consensus       152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E--------il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE--------ILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccce--------eEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            9999995 788899999999999999864433345555544        56888987 666777665 458899999877


Q ss_pred             hHH
Q psy18074        159 HRA  161 (197)
Q Consensus       159 ~~~  161 (197)
                      +.-
T Consensus       224 r~p  226 (311)
T KOG0277|consen  224 RTP  226 (311)
T ss_pred             ccc
Confidence            653

>KOG0264|consensus

Probab=99.85  E-value=3.1e-20  Score=134.59  Aligned_cols=151  Identities=11%  Similarity=0.179  Sum_probs=118.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCC--cccceee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQG--HSRDIYH   73 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~--~~~~~~~   73 (197)
                      ...+++|+.|+.|.+||+....      .+...+.+|...|..++|+|. ...|++++.|+.+.|||++++  +.... .
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~  268 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-V  268 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-c
Confidence            3468899999999999997432      345678899999999999995 457789999999999999963  22222 3


Q ss_pred             cccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccc-eee-eecCcc
Q psy18074         74 TKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIA-RHRQVP  149 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~-~~~~~~  149 (197)
                      ..|.+.|+|++|+|- +..||+|+.|++|.+||+++.. ++.++.++...        |..+.|||... .+| ++.+..
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de--------v~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE--------VFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc--------eEEEEeCCCCCceeEecccCCc
Confidence            578899999999995 5667899999999999999744 55666666655        67999999654 555 455668


Q ss_pred             eEEeecchhhHHH
Q psy18074        150 RHIYNAQAEHRAI  162 (197)
Q Consensus       150 ~~i~~~~~~~~~~  162 (197)
                      +.+|++.+-..+.
T Consensus       341 l~vWDls~ig~eq  353 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQ  353 (422)
T ss_pred             EEEEecccccccc
Confidence            9999998766554

>KOG0294|consensus

Probab=99.85  E-value=4.4e-20  Score=128.72  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=127.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC--EEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR--EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++.++|+|+.|.+|+|||++. ......+..|.+.|+++.|.+.-+  .|++|+.||.|.+|+.....++..+ .+|...
T Consensus        52 s~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~  129 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQ  129 (362)
T ss_pred             cceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-cccccc
Confidence            678999999999999999987 456777788999999999999765  8999999999999999998877776 668888


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~  159 (197)
                      |+.++.+|.+++.++.+.|+.++.|++-.|+.-..+.-....         +.+.|+|.|.+++.+..+.+-||.+..-+
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a---------t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~  200 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA---------TLVSWSPQGDHFVVSGRNKIDIYQLDNAS  200 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc---------eeeEEcCCCCEEEEEeccEEEEEecccHh
Confidence            999999999999999999999999999988876555544432         56899999998888888889999886554


Q ss_pred             HHH
Q psy18074        160 RAI  162 (197)
Q Consensus       160 ~~~  162 (197)
                      ...
T Consensus       201 v~~  203 (362)
T KOG0294|consen  201 VFR  203 (362)
T ss_pred             Hhh
Confidence            443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=1.4e-19  Score=129.88  Aligned_cols=149  Identities=18%  Similarity=0.283  Sum_probs=125.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.|+.+++|++.. ......+..|...+..+.|+|++..+++++.++.+++|++..+.....+ ..|...+.
T Consensus        20 ~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~   97 (289)
T cd00200          20 DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVS   97 (289)
T ss_pred             CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEE
Confidence            578999999999999999986 4567777888899999999999999999999999999999987665555 45667899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      ++.|+|+++++++++.++.+.+||+.+++....+..+..        .+.+++|+|++.+++++. ++.+.+|+....+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  169 (289)
T cd00200          98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--------WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC  169 (289)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC--------cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence            999999988988888899999999998877776664433        368999999999999887 77899999875443

>KOG0277|consensus

Probab=99.85  E-value=4.7e-20  Score=125.25  Aligned_cols=153  Identities=15%  Similarity=0.219  Sum_probs=119.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +...+++++.|++|++|+..- ...+.++.+|...|....|+|. +..+++++.|+.+++||++.......+ ..|...+
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-~ah~~Ei  193 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-EAHNSEI  193 (311)
T ss_pred             cceeEEeeccCCceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-Eecccee
Confidence            356788889999999999975 5778899999999999999995 678899999999999999864322223 5576789


Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcc-cceeeeec-CcceEEeecc
Q psy18074         81 THTVWSL-DNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQ-IRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~~~i~~~~  156 (197)
                      .+..|+. +.+.+++|+.|+.|+.||+++.+ ++..+.+|.        -.|..+.|||. ...||+++ +-.+.||+..
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~--------~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG--------LAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc--------eEEEEEecCcchhhHhhhccccceEEecccc
Confidence            9999988 56678899999999999998754 344444444        34799999995 45666655 4489999998


Q ss_pred             hhhHHHHh
Q psy18074        157 AEHRAIRS  164 (197)
Q Consensus       157 ~~~~~~~~  164 (197)
                      .....+..
T Consensus       266 ~~ds~~e~  273 (311)
T KOG0277|consen  266 RQDSAIET  273 (311)
T ss_pred             cchhhhhh
Confidence            66554443

>KOG0276|consensus

Probab=99.84  E-value=1.2e-19  Score=136.63  Aligned_cols=156  Identities=9%  Similarity=0.101  Sum_probs=134.3

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      +.+++|+.|..|++|+..+ ...+..+.+|..-|.+++.+|...++++++.|-.|++||...+-.......+|.-.|.++
T Consensus        68 nWiv~GsDD~~IrVfnynt-~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNT-GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             ceEEEecCCceEEEEeccc-ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            4689999999999999998 577999999999999999999999999999999999999987654444458899999999


Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc--cceeeeecCc-ceEEeecchhh
Q psy18074         84 VWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ--IRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        84 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      +|+| |.+.+++++.|++|+||.+.+..+..++.+|+..        |+++.|-+-  .-+|+++.++ .+.||+.+...
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG--------VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~  218 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG--------VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS  218 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC--------cceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence            9999 5688999999999999999988888899888876        789998774  4577777766 88999998877


Q ss_pred             HHHHhHhHh
Q psy18074        160 RAIRSKQKR  168 (197)
Q Consensus       160 ~~~~~~~~~  168 (197)
                      .....+-+.
T Consensus       219 CV~TLeGHt  227 (794)
T KOG0276|consen  219 CVQTLEGHT  227 (794)
T ss_pred             HHHHhhccc
Confidence            776655443

>KOG0296|consensus

Probab=99.84  E-value=4.2e-19  Score=125.93  Aligned_cols=149  Identities=11%  Similarity=0.174  Sum_probs=128.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.+++++|+.|...++|++.+ +.....+.+|...|+++.|+.+|.+|++|+.+|.|++|...++.....+.. ....+.
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~-ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~die  152 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDIST-GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIE  152 (399)
T ss_pred             CCceEEecCCCceEEEEEccC-CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceE
Confidence            567899999999999999987 567788899999999999999999999999999999999999988777642 236677


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~  160 (197)
                      =+.|+|.+..|+.|+.||.+-.|.+.++...+.+.++..        ++++=.|.|+|++++++.++ .+.+|+....+.
T Consensus       153 Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~--------~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  153 WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS--------PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC--------CcccccccCCCceEEEEecCceEEEEecCCCce
Confidence            789999999999999999999999988766666666554        36788999999999988765 889999887744

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=3.4e-19  Score=145.47  Aligned_cols=144  Identities=12%  Similarity=0.137  Sum_probs=116.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++++.|+.|++||+.+ +..+..+.+|.+.|++++|+| ++..|++|+.|+.|++||+.++.....+.  +...+
T Consensus       544 ~~~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v  620 (793)
T PLN00181        544 IKSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANI  620 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCe
Confidence            357899999999999999986 567778889999999999997 78899999999999999999887766653  23678


Q ss_pred             eEEEEc-cCCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceee-eecCcceEEeecch
Q psy18074         81 THTVWS-LDNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~-~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~  157 (197)
                      .++.|+ ++|.++++|+.||.|++||++++. .+..+.++..        .|.++.|. ++..|+ ++.+..+.||++..
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~--------~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK--------TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC--------CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            999995 579999999999999999998765 3444444433        37889997 455555 45566899999864

>KOG0318|consensus

Probab=99.83  E-value=2.7e-19  Score=132.26  Aligned_cols=148  Identities=16%  Similarity=0.210  Sum_probs=123.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .++..+++|+.|++|++|.+.... .....+..|.++++++++|||+.+|+++...+.+.+||+.+.+.......-|...
T Consensus       453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak  532 (603)
T KOG0318|consen  453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK  532 (603)
T ss_pred             CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence            378899999999999999998533 3344567899999999999999999999999999999999888754445668899


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN-NKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      |.+++|+|+...+|+|+.|..|.||++......-.+. .|...        |+.+.|-.+...+.+|.+..+.+|+..
T Consensus       533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~g--------Vn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGG--------VNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccC--------ceeEEEecCceEEeccCcceeEEeccc
Confidence            9999999999999999999999999997644332232 33322        689999999888889999999999863

>KOG0278|consensus

Probab=99.83  E-value=3.9e-20  Score=125.54  Aligned_cols=154  Identities=10%  Similarity=0.159  Sum_probs=120.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc----
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR----   76 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----   76 (197)
                      +|.++|++|+.+..+++||++....+...+.+|.+.|..+.|....+.|++++.|+.|++||.+++..+..+...+    
T Consensus       110 ~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtS  189 (334)
T KOG0278|consen  110 QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTS  189 (334)
T ss_pred             ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcc
Confidence            4678899999999999999987778888999999999999999888999999999999999999887766553331    


Q ss_pred             ----------------------------------ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-cccccc
Q psy18074         77 ----------------------------------MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV-NNKQRQ  121 (197)
Q Consensus        77 ----------------------------------~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~  121 (197)
                                                        ...|.+.+++|+-..+++|+.|+.++.||..++..+..+ .++   
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh---  266 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH---  266 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC---
Confidence                                              123445555565556666666667777777776666554 333   


Q ss_pred             ccccccccceecccCcccceeeeecCc-ceEEeecchhhHHH
Q psy18074        122 ALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHRAI  162 (197)
Q Consensus       122 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~~  162 (197)
                           ..+|.|+.|+|||..-|+|+.+ .+.||.....+...
T Consensus       267 -----~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~  303 (334)
T KOG0278|consen  267 -----FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG  303 (334)
T ss_pred             -----CCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence                 3458999999999999988855 89999988776653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=7.6e-19  Score=126.13  Aligned_cols=148  Identities=17%  Similarity=0.295  Sum_probs=123.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.++.|.+||+.+ ......+..|...+.++.|+|++..+++++.++.+++||++++.....+ ..|...+.
T Consensus       104 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~  181 (289)
T cd00200         104 DGRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVN  181 (289)
T ss_pred             CCCEEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE-ecCccccc
Confidence            357888888899999999986 4667777788899999999999888888888999999999988776665 35667899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +++|+|+++.+++++.++.+.+||+..++.+..+..+..        .+.+++|+|++.+++++. ++.+.+|+....+
T Consensus       182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--------ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence            999999999999999899999999998777766644433        368999999998998887 7789999987543

>KOG0293|consensus

Probab=99.83  E-value=1.1e-19  Score=130.97  Aligned_cols=148  Identities=17%  Similarity=0.224  Sum_probs=124.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +|++||+|+.|.+..+|+.....  +...++.+|..+|..+.||||.++|++++.+..+.+||+.+|.+...+..++...
T Consensus       235 nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S  314 (519)
T KOG0293|consen  235 NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS  314 (519)
T ss_pred             CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence            79999999999999999986432  3467788999999999999999999999999999999999999988876666688


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee-cCcceEEeecch
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYNAQA  157 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~~~~  157 (197)
                      +.+.+|.|||..+++|+.|+.+..||+. |+......+...+       .|.+++.++||+++... .+..+.+|+...
T Consensus       315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~-------~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDP-------KVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             cceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccc-------eeEEEEEcCCCcEEEEEecccceeeechhh
Confidence            9999999999999999999999999996 5555555544432       36899999999988754 445678887643

>KOG0647|consensus

Probab=99.83  E-value=4e-19  Score=123.34  Aligned_cols=149  Identities=14%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc-eeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP-LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ...++++|+.|++|++|++...+.. -.....|.++|.+++|+.+|+.+++|+.|+.+++||+.++.....  ..|..+|
T Consensus        39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v--~~Hd~pv  116 (347)
T KOG0647|consen   39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV--AAHDAPV  116 (347)
T ss_pred             cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeee--eecccce
Confidence            4578889999999999999863322 245567899999999999999999999999999999999965554  4678999


Q ss_pred             eEEEEccCCC--EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074         81 THTVWSLDNK--FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      ..+.|-+...  .|++|+-|.+|+.||.++..++.++...+.         ++++..-..--.+ +..+..+.+|+++..
T Consensus       117 kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---------vYa~Dv~~pm~vV-ata~r~i~vynL~n~  186 (347)
T KOG0647|consen  117 KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---------VYAADVLYPMAVV-ATAERHIAVYNLENP  186 (347)
T ss_pred             eEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---------eeehhccCceeEE-EecCCcEEEEEcCCC
Confidence            9999977655  789999999999999999888887766554         2444433332223 344568899999766


Q ss_pred             hHHH
Q psy18074        159 HRAI  162 (197)
Q Consensus       159 ~~~~  162 (197)
                      ..+.
T Consensus       187 ~te~  190 (347)
T KOG0647|consen  187 PTEF  190 (347)
T ss_pred             cchh
Confidence            5543

>KOG0310|consensus

Probab=99.83  E-value=2e-19  Score=131.58  Aligned_cols=145  Identities=14%  Similarity=0.191  Sum_probs=115.2

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +++..|++|+.|+.+++||+.+ ......+.+|+..|.+.+|+|. +..+++|++||.|++||++... .......|..+
T Consensus       121 ~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~p  198 (487)
T KOG0310|consen  121 QDNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCP  198 (487)
T ss_pred             cCCeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCc
Confidence            4678899999999999999987 3445578899999999999995 4578999999999999999874 22333456689


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-eeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKL-GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      |..+.+-|.|..+++++ .+.++|||+.+|..+ ..+..|...        |+|+++..+++.|.+++ |..+.+|+..
T Consensus       199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~Kt--------VTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  199 VESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKT--------VTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             eeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccce--------EEEEEeecCCceEeecccccceEEEEcc
Confidence            99999999999999877 457999999965543 333334443        79999999888887665 6688888844

>KOG0269|consensus

Probab=99.83  E-value=3.2e-20  Score=142.38  Aligned_cols=148  Identities=12%  Similarity=0.189  Sum_probs=122.3

Q ss_pred             CccEEEEEcCCCcEEEEEccC--CCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ--LNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++||+++..|.|.+||+..  ....+..|..|...+.+++|++. ...|++|+.||.|++||++.......+ .+...
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSE  177 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSE  177 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccch
Confidence            568899999999999999975  23556678999999999999985 467889999999999999988776666 33567


Q ss_pred             ceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeec
Q psy18074         79 HVTHTVWSL-DNKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNA  155 (197)
Q Consensus        79 ~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~  155 (197)
                      .|..|.|+| .+.+++++.+.|.+.+||++.. ++...+..|.+        +|.++.|+|++.+||+|+.+ .+.||++
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G--------pV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG--------PVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC--------ceEEEeecCCCceeeecCCCccEEEEec
Confidence            899999999 4788999999999999999864 34445555554        47899999999999987655 7899999


Q ss_pred             chh
Q psy18074        156 QAE  158 (197)
Q Consensus       156 ~~~  158 (197)
                      ...
T Consensus       250 t~~  252 (839)
T KOG0269|consen  250 TDS  252 (839)
T ss_pred             cCC
Confidence            854

>KOG0283|consensus

Probab=99.83  E-value=2.4e-19  Score=138.44  Aligned_cols=160  Identities=14%  Similarity=0.168  Sum_probs=124.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ..++|++++.|.+|++|++.. ..++..| .|...|+|++|+| |.++|++|+-||.++||++...+.......  ..-|
T Consensus       379 Kn~fLLSSSMDKTVRLWh~~~-~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lI  454 (712)
T KOG0283|consen  379 KNNFLLSSSMDKTVRLWHPGR-KECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLI  454 (712)
T ss_pred             cCCeeEeccccccEEeecCCC-cceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhh
Confidence            357899999999999999985 5777776 7899999999999 778999999999999999998776554433  3789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc--ceeeeecCcceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI--RRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~i~~~~~~  158 (197)
                      ++++|.|||++.+.|+.+|..++|+....+......-....-=......|+.+.|.|..  +.|++..|..+.||+.+..
T Consensus       455 TAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  455 TAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             eeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            99999999999999999999999999866554433221110001111247899998733  4788989999999999776


Q ss_pred             hHHHHhH
Q psy18074        159 HRAIRSK  165 (197)
Q Consensus       159 ~~~~~~~  165 (197)
                      ......+
T Consensus       535 ~lv~KfK  541 (712)
T KOG0283|consen  535 DLVHKFK  541 (712)
T ss_pred             hhhhhhc
Confidence            6665553

>KOG0264|consensus

Probab=99.83  E-value=2.9e-19  Score=129.59  Aligned_cols=155  Identities=15%  Similarity=0.202  Sum_probs=116.0

Q ss_pred             CccEEEEEcCCCcEEEEEccC-CCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ-LNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ...+|++.+.|+.+.|||++. ..++.....+|.+.+.|++|+|- +..||+|+.|++|.+||+++-........+|...
T Consensus       239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de  318 (422)
T KOG0264|consen  239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE  318 (422)
T ss_pred             chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence            356889999999999999994 35677788899999999999995 5577899999999999999866543334788999


Q ss_pred             eeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecc---cccccc---ccccccceecccCcccceee-eecCc-ce
Q psy18074         80 VTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNN---KQRQAL---DYSESLKQKYAHHPQIRRIA-RHRQV-PR  150 (197)
Q Consensus        80 v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~---~~~~~~v~~~~~s~~~~~l~-~~~~~-~~  150 (197)
                      |..|.|+|. ...|++++.|+.+.+||+..-........   .....+   .+|...|..+.|+|.--+++ +..++ ..
T Consensus       319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L  398 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL  398 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence            999999996 46678999999999999975322221110   011111   22345689999999766554 54444 67


Q ss_pred             EEeecc
Q psy18074        151 HIYNAQ  156 (197)
Q Consensus       151 ~i~~~~  156 (197)
                      +||...
T Consensus       399 qIW~~s  404 (422)
T KOG0264|consen  399 QIWQMA  404 (422)
T ss_pred             EEeecc
Confidence            999886

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=8.9e-19  Score=143.02  Aligned_cols=152  Identities=13%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC------cccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG------HSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~------~~~~~~~~~   75 (197)
                      +|.+|++|+.|+.|++||++....+...+.+|...|.++.|. ++..|++++.|+.|++||+..+      ..+..+ .+
T Consensus       629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~g  706 (793)
T PLN00181        629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MG  706 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cC
Confidence            578999999999999999986444667778999999999997 6889999999999999999753      233333 56


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-----cccccccccceecccCcccceeeeec-Ccc
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-----QALDYSESLKQKYAHHPQIRRIARHR-QVP  149 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~  149 (197)
                      |...+.+++|+|++.+|++|+.|+.|++|+......+..+.....     .....+...|.+++|+|++..|+++. ++.
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            778899999999999999999999999999876654433321111     01122344689999999998888655 558


Q ss_pred             eEEeec
Q psy18074        150 RHIYNA  155 (197)
Q Consensus       150 ~~i~~~  155 (197)
                      +.||++
T Consensus       787 I~i~~~  792 (793)
T PLN00181        787 IKILEM  792 (793)
T ss_pred             EEEEec
Confidence            899985

>KOG0281|consensus

Probab=99.82  E-value=2.4e-19  Score=126.98  Aligned_cols=162  Identities=14%  Similarity=0.184  Sum_probs=105.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc--ceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR--DIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~   79 (197)
                      |..++++|+.|.+|++||..+ ++++.++..|-..|..+.|+  ..++++++.|..+.+||+......  .....+|...
T Consensus       246 d~rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  246 DERVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             cceEEEecCCCceEEEEeccC-CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence            344555555555555555554 45555555555555555553  344555555555555555443211  1113468889


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      |+.+.|+  .+|+++++.|.+|++|+..+++.+.++.+|...        |.|+.  ..++++++|+ +..+.+|++..+
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG--------IAClQ--Yr~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG--------IACLQ--YRDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc--------ceehh--ccCeEEEecCCCceEEEEecccc
Confidence            9999984  669999999999999999999999999998875        34444  4678888776 458999999877


Q ss_pred             hHHHHhHhHhhhhhhhcCCC
Q psy18074        159 HRAIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~  178 (197)
                      ..-...+-++.-...+++..
T Consensus       391 ~cLRvLeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRFDN  410 (499)
T ss_pred             HHHHHHhchHHhhhheeecC
Confidence            66554454544455555443

>KOG0275|consensus

Probab=99.82  E-value=3.6e-20  Score=130.15  Aligned_cols=147  Identities=18%  Similarity=0.259  Sum_probs=123.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      |...+|+|+.||.|++|.+.+ +.+++.+. +|...|+++.||.|+..+++++.|.++++.-+.+|+++..+ .+|.+.|
T Consensus       274 DsEMlAsGsqDGkIKvWri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyv  351 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIET-GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYV  351 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEec-chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccc
Confidence            456789999999999999998 68888886 89999999999999999999999999999999999998887 7899999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc--ccceeeeecCcceEEeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP--QIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~i~~~~  156 (197)
                      +...|.++|.++++++.||+|++|+..+.+++.++.+....      .+|.++-.-|  ...++++...+.+.|-++.
T Consensus       352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d------~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD------YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc------ccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            99999999999999999999999999999999888765432      2245554444  2345566666666666653

>KOG0973|consensus

Probab=99.82  E-value=3.3e-19  Score=140.96  Aligned_cols=176  Identities=15%  Similarity=0.179  Sum_probs=135.3

Q ss_pred             CCccEEEEEc--CCCcEEEEEccCC-----------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--
Q psy18074          1 MEAFVFTAAN--EDFNLYSYDIRQL-----------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ--   65 (197)
Q Consensus         1 ~~~~~l~~~~--~d~~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~--   65 (197)
                      .||..+++|+  .|+.+.+|+....           ...+..+..|.+.|.|+.|+|||.+||+|+.|+.|.+|....  
T Consensus        23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~  102 (942)
T KOG0973|consen   23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIG  102 (942)
T ss_pred             CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccC
Confidence            3788899999  8999999986421           133455678999999999999999999999999999999872  


Q ss_pred             -Cc-c-------------cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccc
Q psy18074         66 -GH-S-------------RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLK  130 (197)
Q Consensus        66 -~~-~-------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  130 (197)
                       +. .             ......+|.+.|..++|+|++.++++++.|+.|.+|+..+.+.+..+.+|+..        |
T Consensus       103 ~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~--------V  174 (942)
T KOG0973|consen  103 SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL--------V  174 (942)
T ss_pred             CcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc--------c
Confidence             00 0             01124679999999999999999999999999999999999888888888765        7


Q ss_pred             eecccCcccceeeeecCc-ceEEeecchhhHHHHhHhHh------hhhhhhcCCCCCCCCC
Q psy18074        131 QKYAHHPQIRRIARHRQV-PRHIYNAQAEHRAIRSKQKR------KESNKRTHSAPGTVPQ  184 (197)
Q Consensus       131 ~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  184 (197)
                      -.+.|.|-|+++|+-+++ .+.||....-..+....+..      .-..|..+++.+.-..
T Consensus       175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            899999999999987766 88999976533333222221      1223556666665443

>KOG0265|consensus

Probab=99.82  E-value=4.6e-19  Score=122.89  Aligned_cols=163  Identities=16%  Similarity=0.197  Sum_probs=135.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCE-EEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGRE-FVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      |++.+++++.|.+|+.||.++ ++..+.+.+|.+.|.++.-+..|.. +.+++.|+++++||+++......+...  ..+
T Consensus       101 d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yql  177 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQL  177 (338)
T ss_pred             CCCEEEEecCCceEEEEeccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeE
Confidence            788999999999999999998 6889999999999999985555654 557889999999999998887776333  789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +++.|..++..+.+|+-|+.|++||++.+....++.++...        |+.+..+|+|.++.+.+ +..+.+|+.+.-.
T Consensus       178 tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt--------It~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  178 TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT--------ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             EEEEecccccceeeccccCceeeeccccCcceEEeecccCc--------eeeEEeccCCCccccccccceEEEEEecccC
Confidence            99999999999999999999999999999999888887764        78999999999999766 5588999988653


Q ss_pred             HHHH----h--HhHhhhhhhhc
Q psy18074        160 RAIR----S--KQKRKESNKRT  175 (197)
Q Consensus       160 ~~~~----~--~~~~~~~~~~~  175 (197)
                      ...+    .  ..+..+.|..+
T Consensus       250 p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             CCCceEEEeecchhhhhhhcce
Confidence            3222    1  44556666554

>KOG0281|consensus

Probab=99.82  E-value=8.5e-20  Score=129.19  Aligned_cols=154  Identities=14%  Similarity=0.182  Sum_probs=118.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.+++++++.|.+|++|++.+ ...++.+.+|...|.|+.+  .+..+++|+.|.+|++||+..|.++..+ .+|..-|
T Consensus       328 fd~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-eGHEeLv  403 (499)
T KOG0281|consen  328 FDDKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELV  403 (499)
T ss_pred             cccceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-hchHHhh
Confidence            4678999999999999999998 6889999999999999988  6899999999999999999999998887 7888999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCcccceeeeecCcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~  159 (197)
                      .++.|  |.+.+++|..||.|++||+.++........... ..+..+...|..+.|.. -+.+++..++.+.||+.-...
T Consensus       404 RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  404 RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             hheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCCC
Confidence            99999  567899999999999999986543211111000 00111122456666643 244555566699999986554


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       481 ~~  482 (499)
T KOG0281|consen  481 PS  482 (499)
T ss_pred             cc
Confidence            33

>KOG0296|consensus

Probab=99.82  E-value=1.3e-18  Score=123.51  Aligned_cols=143  Identities=17%  Similarity=0.285  Sum_probs=123.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--------
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--------   74 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------   74 (197)
                      +.+|++|+.||.+.+|.+.+ +...+.+.+|..++++-.|.|+|++++++..||+|++|+..++..+.....        
T Consensus       160 a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~  238 (399)
T KOG0296|consen  160 AHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC  238 (399)
T ss_pred             ccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence            67899999999999999987 366888999999999999999999999999999999999987654433210        


Q ss_pred             --------------------------------------------------------------------------------
Q psy18074         75 --------------------------------------------------------------------------------   74 (197)
Q Consensus        75 --------------------------------------------------------------------------------   74 (197)
                                                                                                      
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence                                                                                            


Q ss_pred             ------ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074         75 ------KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus        75 ------~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                            .|...|..+-|-+ ..+|++++.+|.|+.||.++|+.+..+.+|...        |.+++++|+.+++++.+++
T Consensus       319 ~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~--------Il~f~ls~~~~~vvT~s~D  389 (399)
T KOG0296|consen  319 TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG--------ILDFALSPQKRLVVTVSDD  389 (399)
T ss_pred             hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh--------eeEEEEcCCCcEEEEecCC
Confidence                  0677899999988 789999999999999999999999999998876        6799999999999988776


Q ss_pred             -ceEEeec
Q psy18074        149 -PRHIYNA  155 (197)
Q Consensus       149 -~~~i~~~  155 (197)
                       ...+|..
T Consensus       390 ~~a~VF~v  397 (399)
T KOG0296|consen  390 NTALVFEV  397 (399)
T ss_pred             CeEEEEec
Confidence             4467654

>KOG0292|consensus

Probab=99.82  E-value=3.5e-19  Score=138.83  Aligned_cols=157  Identities=13%  Similarity=0.189  Sum_probs=132.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ...+|++|+.|-+|++|+... .+++.++.+|..-|..+.|++.-.+++++|.|.+|+||+..++.++..+ ++|.-.|.
T Consensus        62 ~qplFVSGGDDykIkVWnYk~-rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVM  139 (1202)
T KOG0292|consen   62 TQPLFVSGGDDYKIKVWNYKT-RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVM  139 (1202)
T ss_pred             CCCeEEecCCccEEEEEeccc-ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEE
Confidence            467899999999999999987 6889999999999999999999999999999999999999999998887 88989999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-----------------ccc----cccccccccccceecccCcccc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV-----------------NNK----QRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------~~~----~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      |.+|+|....+++++.|-+|+|||+..-+....-                 .+.    -..++.+|+-.|+-.+|+|..-
T Consensus       140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence            9999999999999999999999998632211111                 111    1134566666789999999999


Q ss_pred             eeeeecCc-ceEEeecchhhH
Q psy18074        141 RIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus       141 ~l~~~~~~-~~~i~~~~~~~~  160 (197)
                      .|++|.++ .+.+|.+...+.
T Consensus       220 liVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             eEEecCCcceeeEEEeccccc
Confidence            99998877 889998876543

>KOG0267|consensus

Probab=99.82  E-value=2.8e-20  Score=141.84  Aligned_cols=146  Identities=16%  Similarity=0.274  Sum_probs=129.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..++++|+.+|+|++||+.. +..++.+.+|...+..+.|+|-+.+++.|+.|+.+.+||++...+...+ .+|...|..
T Consensus        82 E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~s~~~vv~~  159 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEE-AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-KSHTRVVDV  159 (825)
T ss_pred             hhhhcccccCCceeeeehhh-hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee-cCCcceeEE
Confidence            45788999999999999986 6788999999999999999999999999999999999999976676666 458889999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      ++|+|+|+|++.+++|..+++||+..|+....|..++..        +..+.|+|..-.++.|+.+ .+.+|++..-
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--------v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--------VQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             EeecCCCceeeccCCcceeeeeccccccccccccccccc--------ccccccCchhhhhccCCCCceeeeecccee
Confidence            999999999999999999999999999999888877765        5688899998888877655 8899998743

>KOG0268|consensus

Probab=99.81  E-value=6.3e-20  Score=130.13  Aligned_cols=148  Identities=19%  Similarity=0.209  Sum_probs=121.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +..+|++++.|+.|.+||++. +.|+..+.. ......++|+|.+-.|++++.|..++.||++.-......+.+|.+.|.
T Consensus       199 ETsILas~~sDrsIvLyD~R~-~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~  276 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM  276 (433)
T ss_pred             cchheeeeccCCceEEEeccc-CCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence            467899999999999999997 566666533 456678999997778899999999999999976654444578889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      +++|||.|+.+++|+.|.+|+||.++.+.....+.....+       .|.++.||-|.++|.+|+++ .+.+|++...
T Consensus       277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-------~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-------HVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-------eeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            9999999999999999999999999876654444333222       26899999999999999987 8999998643

>KOG0973|consensus

Probab=99.81  E-value=3.3e-19  Score=140.99  Aligned_cols=158  Identities=14%  Similarity=0.190  Sum_probs=123.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccC------CC-----------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQ------LN-----------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA   63 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~------~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~   63 (197)
                      +||.+||+|+.|..|.+|....      .+           +.+..+.+|.+.|..++|+|++.+|++++.|++|.+|+.
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence            5899999999999999999762      11           245568899999999999999999999999999999999


Q ss_pred             CCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         64 HQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      .+.+.+..+ .+|.+.|-.+.|.|-|+|+++-++|++|++|++.+-...+.+..+......  ......+.|||||++|+
T Consensus       159 ~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~--~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  159 KTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL--TTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             ccceeeeee-ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC--cceeeecccCCCcCeec
Confidence            998766666 778899999999999999999999999999998765555555544332111  12357889999999999


Q ss_pred             eecC-----cceEEeecchhhHH
Q psy18074        144 RHRQ-----VPRHIYNAQAEHRA  161 (197)
Q Consensus       144 ~~~~-----~~~~i~~~~~~~~~  161 (197)
                      +...     ..+.|.+...-+..
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~  258 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVD  258 (942)
T ss_pred             chhhccCCcceeEEEecCCceee
Confidence            5432     23466555444433

>KOG0289|consensus

Probab=99.81  E-value=1.3e-18  Score=126.06  Aligned_cols=144  Identities=15%  Similarity=0.189  Sum_probs=117.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD--MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .|.||++++.|+..-+.|++.. ..+.....  .+-.+++.+|+|||..|.+|..|+.|++||+.++.....| .+|.++
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g-~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F-pght~~  391 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSG-SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF-PGHTGP  391 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCC-cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC-CCCCCc
Confidence            5789999999999999999873 43333322  2335899999999999999999999999999988866666 669999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      |..++|+-+|-|++++++|+.|++||++..+...++.-....       .+.+++|.+.|++|+.+. ..+.||..
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-------~v~s~~fD~SGt~L~~~g-~~l~Vy~~  459 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-------EVNSLSFDQSGTYLGIAG-SDLQVYIC  459 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-------cceeEEEcCCCCeEEeec-ceeEEEEE
Confidence            999999999999999999999999999988877776654432       258999999999998763 34444433

>KOG0305|consensus

Probab=99.81  E-value=8.3e-19  Score=131.76  Aligned_cols=147  Identities=17%  Similarity=0.262  Sum_probs=126.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEE--eCCCcEEEEECCCCcccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAG--GYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      .|+.++|+|+.|+.+.|||... ..+...+..|...|.+++|+| ....||+|  +.|+.|++||..++..+.....+  
T Consensus       311 ~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--  387 (484)
T KOG0305|consen  311 PDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--  387 (484)
T ss_pred             CCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--
Confidence            3789999999999999999965 578888999999999999999 56678875  57999999999999988887665  


Q ss_pred             cceeEEEEccCCCEEEE--EeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         78 QHVTHTVWSLDNKFVIS--ASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      ..|+++.|++..+.+++  |..++.|.||+..+.+.+..+.+|...        |-.++++|||..|+++.. ....+|+
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R--------Vl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR--------VLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce--------eEEEEECCCCCEEEEecccCcEEecc
Confidence            79999999999877775  355778999999998888888887765        569999999999997664 5899999


Q ss_pred             cchh
Q psy18074        155 AQAE  158 (197)
Q Consensus       155 ~~~~  158 (197)
                      ....
T Consensus       460 ~f~~  463 (484)
T KOG0305|consen  460 LFDE  463 (484)
T ss_pred             ccCC
Confidence            8765

>KOG1407|consensus

Probab=99.81  E-value=1.1e-18  Score=118.98  Aligned_cols=149  Identities=13%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce----------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI----------   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~----------   71 (197)
                      .+.+|++++.|.+|++||++. +++...... .+.-..+.|+|+|.+++.++.|..|.+.|.++.+....          
T Consensus        76 ~~d~~atas~dk~ir~wd~r~-~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~  153 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRS-GKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEI  153 (313)
T ss_pred             CCcceEEecCCceEEEEEecc-CcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeee
Confidence            456899999999999999997 577777655 34445689999999999999999999888874221110          


Q ss_pred             --------------------e----------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc
Q psy18074         72 --------------------Y----------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ  121 (197)
Q Consensus        72 --------------------~----------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  121 (197)
                                          +          ...|.....|+.|+|+|+|+|+|+.|..+.+||+...-+...+..    
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR----  229 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR----  229 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc----
Confidence                                0          123777888999999999999999999999999976555444433    


Q ss_pred             ccccccccceecccCcccceeeeecCc-ceEEeecchhhH
Q psy18074        122 ALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus       122 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~  160 (197)
                          .+.+|..++||.||++||+++.+ .+-|-....+.+
T Consensus       230 ----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  230 ----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             ----ccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence                34568999999999999988866 566665554443

>KOG0640|consensus

Probab=99.81  E-value=3.5e-19  Score=124.38  Aligned_cols=152  Identities=14%  Similarity=0.241  Sum_probs=124.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee--eccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~   78 (197)
                      ..+|++|+.|++|++||+.+..  +....++. ..+|.++.|+|.|.+|+.|.....+++||+.+-.+....  ...|.+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            3689999999999999997522  22333433 568999999999999999999999999999987664332  456889


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .|+++.+++.|+..++++.||.|++||--+++++.++...+..      +.|.+..|..+|++|.++. +..+.+|.+..
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g------sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG------SEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC------ceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence            9999999999999999999999999999999998877654432      3478999999999998655 55789999987


Q ss_pred             hhHH
Q psy18074        158 EHRA  161 (197)
Q Consensus       158 ~~~~  161 (197)
                      .+..
T Consensus       337 ~R~l  340 (430)
T KOG0640|consen  337 GRML  340 (430)
T ss_pred             CceE
Confidence            6543

>KOG0772|consensus

Probab=99.81  E-value=2.6e-19  Score=132.19  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=108.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeeccc-----CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce--eecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKD-----MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI--YHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~   75 (197)
                      -..|++++.||++++||.........++..     ..-+++.++|+|+|..|++|..||.|.+|+.........  ....
T Consensus       281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A  360 (641)
T KOG0772|consen  281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA  360 (641)
T ss_pred             ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence            356889999999999999754444444422     234689999999999999999999999999864332222  2345


Q ss_pred             ccc--ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecCcc---
Q psy18074         76 RMQ--HVTHTVWSLDNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP---  149 (197)
Q Consensus        76 ~~~--~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~---  149 (197)
                      |..  .|+|+.||++|++|++-+.|+++++||+++.+ ++....+-... +     .-+.++|||+.++|++|...+   
T Consensus       361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-~-----~~tdc~FSPd~kli~TGtS~~~~~  434 (641)
T KOG0772|consen  361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-F-----PGTDCCFSPDDKLILTGTSAPNGM  434 (641)
T ss_pred             cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-C-----CCCccccCCCceEEEecccccCCC
Confidence            554  89999999999999999999999999999754 34333332211 1     136789999999998775432   


Q ss_pred             ----eEEeecchhh
Q psy18074        150 ----RHIYNAQAEH  159 (197)
Q Consensus       150 ----~~i~~~~~~~  159 (197)
                          ..+|+....+
T Consensus       435 ~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  435 TAGTLFFFDRMTLD  448 (641)
T ss_pred             CCceEEEEecccee
Confidence                3555554443

>KOG0305|consensus

Probab=99.80  E-value=8.9e-19  Score=131.58  Aligned_cols=151  Identities=14%  Similarity=0.132  Sum_probs=127.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeeccc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .+|.+|++|..+|.|.|||... ...+..+.+ |...|.+++|+  +..+.+|+.++.|..+|++..........+|...
T Consensus       227 ~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe  303 (484)
T KOG0305|consen  227 PDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE  303 (484)
T ss_pred             CCCCEEEEeecCCeEEEEehhh-ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence            4799999999999999999986 455677777 89999999997  6788999999999999999876654445789999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceeeeecC---cceEEeec
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQ---VPRHIYNA  155 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~---~~~~i~~~  155 (197)
                      |+.+.|++|++++|+|+.|+.+.|||....+++..+..|...        |..++|+| ....||+|..   ..+.+|+.
T Consensus       304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA--------VKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA--------VKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             eeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee--------eeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence            999999999999999999999999999877777777777665        78999999 7778886553   36799998


Q ss_pred             chhhHHH
Q psy18074        156 QAEHRAI  162 (197)
Q Consensus       156 ~~~~~~~  162 (197)
                      .....+.
T Consensus       376 ~~g~~i~  382 (484)
T KOG0305|consen  376 NTGARID  382 (484)
T ss_pred             CCCcEec
Confidence            8665543

>KOG0267|consensus

Probab=99.80  E-value=8e-20  Score=139.40  Aligned_cols=153  Identities=14%  Similarity=0.212  Sum_probs=133.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      +..+++|+.|..+.+|.+.+. ..+..+.+|.++|.++.|++....|++|+.+|.|++||+..+..++.+ .+|...+.+
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~s  117 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITS  117 (825)
T ss_pred             ceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcce
Confidence            467889999999999999763 455568899999999999999999999999999999999998887766 678899999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhhHH
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHRA  161 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~~  161 (197)
                      ++|+|-+.+.++|+.|+.+.+||.+...+.+.+.++...        +..+.|+|+|++++.+.+ ..+.||++...+-.
T Consensus       118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v--------v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~  189 (825)
T KOG0267|consen  118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV--------VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS  189 (825)
T ss_pred             eeeccceEEeccccccccceehhhhccCceeeecCCcce--------eEEEeecCCCceeeccCCcceeeeecccccccc
Confidence            999999999999999999999999988888888886554        689999999999998776 58899999777655


Q ss_pred             HHhH
Q psy18074        162 IRSK  165 (197)
Q Consensus       162 ~~~~  165 (197)
                      ..+.
T Consensus       190 ~ef~  193 (825)
T KOG0267|consen  190 KEFK  193 (825)
T ss_pred             cccc
Confidence            4443

>KOG1332|consensus

Probab=99.80  E-value=3.4e-18  Score=115.72  Aligned_cols=148  Identities=14%  Similarity=0.208  Sum_probs=115.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCccccee-ecccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRM   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~   77 (197)
                      |+.||+++.|+.|+||..++.+  .++..|.+|.++|+.++|..  .|..|+++++||.|.||.-.+++-.... +..|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            6789999999999999998644  56788999999999999954  6999999999999999999988543332 46788


Q ss_pred             cceeEEEEccC--CCEEEEEeCCCcEEEEEcCCC-c-ee-eeeccccccccccccccceecccCcc---c----------
Q psy18074         78 QHVTHTVWSLD--NKFVISASDEMNLRVWKAHAS-E-KL-GYVNNKQRQALDYSESLKQKYAHHPQ---I----------  139 (197)
Q Consensus        78 ~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~-~-~~-~~~~~~~~~~~~~~~~~v~~~~~s~~---~----------  139 (197)
                      ..|++++|.|.  |-.|++++.||.|.|.+.+.. . .. .....|...        |++++|.|.   |          
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G--------vnsVswapa~~~g~~~~~~~~~~  174 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG--------VNSVSWAPASAPGSLVDQGPAAK  174 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc--------cceeeecCcCCCccccccCcccc
Confidence            99999999996  567889999999999988754 1 11 122233322        678888875   4          


Q ss_pred             -ceeeee-cCcceEEeecchh
Q psy18074        140 -RRIARH-RQVPRHIYNAQAE  158 (197)
Q Consensus       140 -~~l~~~-~~~~~~i~~~~~~  158 (197)
                       ++|+++ .+..+.||+....
T Consensus       175 ~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  175 VKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             cceeeccCCccceeeeecCCc
Confidence             556654 4668999998765

>KOG1274|consensus

Probab=99.79  E-value=5.3e-18  Score=132.41  Aligned_cols=150  Identities=13%  Similarity=0.176  Sum_probs=125.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-------   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------   74 (197)
                      +|+++|.|+.|-.|++.++.+ ......+.+|.++|.++.|+|++..|++.+.||.|++|++.++.+...+..       
T Consensus       107 ~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~  185 (933)
T KOG1274|consen  107 SGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF  185 (933)
T ss_pred             CCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence            578999999999999999987 466788999999999999999999999999999999999998876554411       


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEe
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIY  153 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~  153 (197)
                      .....+..++|+|+|..++..+.|+.|.+|+..+......+.......      .+..++|+|.|++||++. ++.+.||
T Consensus       186 ~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss------~~~~~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  186 ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS------KFSDLQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc------ceEEEEEcCCCcEEeeeccCCcEEEE
Confidence            113467889999998888888899999999999888877776554432      257899999999999766 5589999


Q ss_pred             ecchh
Q psy18074        154 NAQAE  158 (197)
Q Consensus       154 ~~~~~  158 (197)
                      +....
T Consensus       260 nv~t~  264 (933)
T KOG1274|consen  260 NVDTH  264 (933)
T ss_pred             ecccc
Confidence            99863

>KOG0316|consensus

Probab=99.79  E-value=2.5e-18  Score=115.87  Aligned_cols=153  Identities=13%  Similarity=0.185  Sum_probs=125.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc--ceee------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR--DIYH------   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~------   73 (197)
                      |..-|++++.|..+.+||..+ ++..+.+.+|.+.|..+.|+.+...+++|+.|..+++||.++....  ..+.      
T Consensus        70 Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V  148 (307)
T KOG0316|consen   70 DNSKFASCGGDKAVQVWDVNT-GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV  148 (307)
T ss_pred             cccccccCCCCceEEEEEccc-CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence            566789999999999999998 7889999999999999999999999999999999999998854321  1110      


Q ss_pred             -----cc--------------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccc
Q psy18074         74 -----TK--------------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQA  122 (197)
Q Consensus        74 -----~~--------------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  122 (197)
                           .+                          -..+|++++|+++++..+.++.++.+++.|-.+|+.+..+.++...-
T Consensus       149 ~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  149 SSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             eEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce
Confidence                 00                          13589999999999999999999999999999999999999888754


Q ss_pred             cccccccceecccCcccceeeeecCc-ceEEeecchhhHH
Q psy18074        123 LDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHRA  161 (197)
Q Consensus       123 ~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~  161 (197)
                      +      -...+++.....+++++.+ -+.+|++......
T Consensus       229 y------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  229 Y------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             e------eeeeeecccceeEEeccCCceEEEEEeccceee
Confidence            3      2355667766777777655 7799998766544

>KOG0640|consensus

Probab=99.79  E-value=5.8e-18  Score=118.37  Aligned_cols=160  Identities=9%  Similarity=0.177  Sum_probs=126.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccC------------C----C-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQ------------L----N-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA   63 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~------------~----~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~   63 (197)
                      .||.++++|+.|..|+|+|..-            .    . ..++.+-.|...|.++.|+|....|++++.|++|++||.
T Consensus       122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDf  201 (430)
T KOG0640|consen  122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDF  201 (430)
T ss_pred             CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEec
Confidence            4899999999999999999650            0    0 235677889999999999999999999999999999999


Q ss_pred             CCCccccee-ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         64 HQGHSRDIY-HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        64 ~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ........+ ......+|.+++|+|.|.+|+.|.+...+++||+.+.++...-.+...     +...|+++.+++.|++-
T Consensus       202 sK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q-----ht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  202 SKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ-----HTGAITQVRYSSTGSLY  276 (430)
T ss_pred             ccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc-----cccceeEEEecCCccEE
Confidence            865433322 011236899999999999999999999999999999888655443221     23457999999999988


Q ss_pred             eeec-CcceEEeecchhhHHHHhH
Q psy18074        143 ARHR-QVPRHIYNAQAEHRAIRSK  165 (197)
Q Consensus       143 ~~~~-~~~~~i~~~~~~~~~~~~~  165 (197)
                      ++++ ++.+.||+-...+.+....
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~  300 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIG  300 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHH
Confidence            8776 5589999988777665553

>KOG0308|consensus

Probab=99.79  E-value=5.1e-18  Score=128.34  Aligned_cols=148  Identities=16%  Similarity=0.172  Sum_probs=123.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---------Cceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---------SPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      +..++|+|+.|+.|.+||+..+.         .....+. ++..+|.+++.++.|..+++|+..+.+++||.+++..+..
T Consensus       129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk  208 (735)
T KOG0308|consen  129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK  208 (735)
T ss_pred             CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee
Confidence            56789999999999999998531         1233344 7778999999999999999999999999999999876655


Q ss_pred             eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ce
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PR  150 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~  150 (197)
                      + .+|...|..+..++||+.+++++.||+|++||+...+++.++..|...        |..+..+|+-..+.+|..+ .+
T Consensus       209 L-rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~--------VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  209 L-RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG--------VWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             e-eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--------eEEEeeCCCcceEEecCCCCcE
Confidence            5 589999999999999999999999999999999999999988777665        6788888988888876654 55


Q ss_pred             EEeecchh
Q psy18074        151 HIYNAQAE  158 (197)
Q Consensus       151 ~i~~~~~~  158 (197)
                      ..-+++..
T Consensus       280 ~~Tdl~n~  287 (735)
T KOG0308|consen  280 YRTDLRNP  287 (735)
T ss_pred             EecccCCc
Confidence            55555553

>KOG0308|consensus

Probab=99.79  E-value=5.8e-19  Score=133.35  Aligned_cols=163  Identities=10%  Similarity=0.184  Sum_probs=135.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEE-CCCCCEEEEEeCCCcEEEEECCCCcc--ccee-----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDY-SPTGREFVAGGYDKSLRLYLAHQGHS--RDIY-----   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~v~i~d~~~~~~--~~~~-----   72 (197)
                      +++.|++++.|.+|++|+..... -+...+..|..-|.|+++ .++...+++|+-|+.|++||+.++..  +..+     
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            57789999999999999998643 567788899999999999 88888999999999999999997732  2221     


Q ss_pred             ---ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCc
Q psy18074         73 ---HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQV  148 (197)
Q Consensus        73 ---~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~  148 (197)
                         ..++...|++++.++.|..+++|+..+.+++||.++++.+..+.+|...        |..+-.++||+.+.+ ++++
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN--------Vr~ll~~dDGt~~ls~sSDg  235 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN--------VRVLLVNDDGTRLLSASSDG  235 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc--------eEEEEEcCCCCeEeecCCCc
Confidence               2267789999999999999999999999999999999988888887765        789999999988875 5567


Q ss_pred             ceEEeecchhhHHHHhHhHhhhhh
Q psy18074        149 PRHIYNAQAEHRAIRSKQKRKESN  172 (197)
Q Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~  172 (197)
                      .+.+|++.+.+.......+++...
T Consensus       236 tIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  236 TIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             eEEeeeccccceeeeEEeccCceE
Confidence            999999998877666555544433

>KOG0288|consensus

Probab=99.79  E-value=5.5e-18  Score=122.05  Aligned_cols=143  Identities=15%  Similarity=0.200  Sum_probs=116.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc---cccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK---RMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~   79 (197)
                      +..+++|..|++|++||.+. ..+...... .+.|+++..++++..+.+++.|..+.+.|+++......+...   -...
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD  389 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRS-ADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD  389 (459)
T ss_pred             ceeeeecccccceEEEeccC-CceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence            45678899999999999987 566777765 469999999999999999999999999999987766555111   1135


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEe
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIY  153 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~  153 (197)
                      .+.+.|||++.|+++|+.||.|+||++.+++....+......      ..|.+++|+|.|..+++.+.+ .+.+|
T Consensus       390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC------cceEEEEEcCCCchhhcccCCcceEec
Confidence            889999999999999999999999999999988777655443      137899999999998876654 56666

>KOG0772|consensus

Probab=99.79  E-value=1.7e-18  Score=127.98  Aligned_cols=128  Identities=13%  Similarity=0.228  Sum_probs=95.6

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc-ccee----ecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy18074         31 KDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHS-RDIY----HTKRMQHVTHTVWSLDNKFVISASDEMNLRVW  104 (197)
Q Consensus        31 ~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~-~~~~----~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vw  104 (197)
                      .+|...+++.+|+|+. ..|++++.||++++||+..... +.++    ..+..-.++..+|+|+|+++|+|+.||.|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            4566779999999965 5788999999999999986442 3333    12334578999999999999999999999999


Q ss_pred             EcCCCc--e-eeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhhHHHHh
Q psy18074        105 KAHASE--K-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEHRAIRS  164 (197)
Q Consensus       105 d~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~~~~~~  164 (197)
                      +..+..  + ...-..|..      ...|+|+.||+||++|++ +.++...+|++++.+..+..
T Consensus       345 ~~~~~~v~p~~~vk~AH~~------g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLP------GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             ecCCcccccceEeeeccCC------CCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence            975422  1 112222332      124799999999999995 66779999999988775543

>KOG0313|consensus

Probab=99.79  E-value=4.1e-18  Score=121.53  Aligned_cols=145  Identities=15%  Similarity=0.283  Sum_probs=118.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH--SRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~   79 (197)
                      |...+++++.|.+|+.||+.+ +.....+.. ...+.++..+|...+|++|+.|..+++||.+++.  .+.....+|.+.
T Consensus       270 d~~v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  270 DATVIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             CCCceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            567789999999999999997 455555544 6789999999999999999999999999998753  444446789999


Q ss_pred             eeEEEEccCCCE-EEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074         80 VTHTVWSLDNKF-VISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      |.++.|+|...+ |++++.|+++++||+++.. +++.+.++...        |.++.|+..+..+..|.+..+.|+...
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK--------vl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK--------VLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce--------EEEEeccCCceEEeccCcceEEEeccc
Confidence            999999997655 6799999999999999877 78888777655        568899876665556667788888654

>KOG0643|consensus

Probab=99.78  E-value=2.8e-17  Score=112.64  Aligned_cols=170  Identities=15%  Similarity=0.173  Sum_probs=135.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||-+|.+++.|..+.+|-.-+ ++.+-.+.+|.+.|++++.+.+...+++|+.|.++++||+.+|+.+..+..+  ..|
T Consensus        20 ~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~V   96 (327)
T KOG0643|consen   20 REGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN--SPV   96 (327)
T ss_pred             CCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC--Cee
Confidence            3789999999999999998765 6778999999999999999999999999999999999999999998887555  789


Q ss_pred             eEEEEccCCCEEEEEeC-----CCcEEEEEcCC-------CceeeeeccccccccccccccceecccCcccceeeeec-C
Q psy18074         81 THTVWSLDNKFVISASD-----EMNLRVWKAHA-------SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-Q  147 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~-----dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~  147 (197)
                      ..+.|+++|++++...+     .+.|.++|++.       .++...+..+.        +.++..-|.|-++.|++|. +
T Consensus        97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--------skit~a~Wg~l~~~ii~Ghe~  168 (327)
T KOG0643|consen   97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--------SKITSALWGPLGETIIAGHED  168 (327)
T ss_pred             EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--------cceeeeeecccCCEEEEecCC
Confidence            99999999999886644     46799999983       33344444333        3367889999988888665 4


Q ss_pred             cceEEeecchhhH-HHHhHhHhhhhhhhcCCCCCC
Q psy18074        148 VPRHIYNAQAEHR-AIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       148 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      +.+.+|+++..+. ......+...++.++.++...
T Consensus       169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT  203 (327)
T ss_pred             CcEEEEEcccCceeeechhhhccccccccccCCcc
Confidence            5899999988644 333355566777777766544

>KOG1539|consensus

Probab=99.78  E-value=1.4e-17  Score=129.01  Aligned_cols=145  Identities=13%  Similarity=0.146  Sum_probs=118.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec---ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~------   72 (197)
                      .|++.+.|...|.|-+|+++. +.....+   ..|.++|++++...-++.+++++.+|.+.+||.....+....      
T Consensus       459 CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~  537 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI  537 (910)
T ss_pred             cCceEEEeccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence            478899999999999999987 4555555   589999999999887888999999999999998754321110      


Q ss_pred             ----------------------------------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         73 ----------------------------------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        73 ----------------------------------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                                                        ..+|.+.++.++|||||++|++++.|++|++||+.++..+..+...
T Consensus       538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence                                              1348899999999999999999999999999999999988776554


Q ss_pred             cccccccccccceecccCcccceeeeec-C-cceEEeecc
Q psy18074        119 QRQALDYSESLKQKYAHHPQIRRIARHR-Q-VPRHIYNAQ  156 (197)
Q Consensus       119 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~~~i~~~~  156 (197)
                      ..         ..++.|||+|.+||+.. + ..+.+|.-.
T Consensus       618 ~~---------~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  618 SP---------CTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             Cc---------ceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            44         47899999999999654 3 377888643

>KOG0293|consensus

Probab=99.78  E-value=4.3e-18  Score=122.81  Aligned_cols=149  Identities=14%  Similarity=0.232  Sum_probs=109.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-----------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS-----------   68 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~-----------   68 (197)
                      +|.+++++++.|..+.+||..+ +.....+. ++...+.+++|.|||..+++|+.|+.+..||+.....           
T Consensus       279 PDdryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v  357 (519)
T KOG0293|consen  279 PDDRYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKV  357 (519)
T ss_pred             CCCCeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccccee
Confidence            4778899999999999999987 45554443 3457899999999999999999999999999872110           


Q ss_pred             -----------ccee------------------------------------------------------------ecccc
Q psy18074         69 -----------RDIY------------------------------------------------------------HTKRM   77 (197)
Q Consensus        69 -----------~~~~------------------------------------------------------------~~~~~   77 (197)
                                 +...                                                            ..+|.
T Consensus       358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence                       0000                                                            00011


Q ss_pred             --cceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceeeeecCc-ceEE
Q psy18074         78 --QHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQV-PRHI  152 (197)
Q Consensus        78 --~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~-~~~i  152 (197)
                        ..+-.-||.. +..++++|+.|+.|++|+..+|+.+..+.+|...        |++++|+| +-.++|+++++ .+.|
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~--------vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT--------VNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce--------eeEEecCCCCHHHhhccCCCCeEEE
Confidence              1222334433 3357888999999999999999999999888865        79999999 66788876655 8899


Q ss_pred             eecchh
Q psy18074        153 YNAQAE  158 (197)
Q Consensus       153 ~~~~~~  158 (197)
                      |...+.
T Consensus       510 Wg~~~~  515 (519)
T KOG0293|consen  510 WGPSDN  515 (519)
T ss_pred             ecCCcc
Confidence            987644

>KOG0282|consensus

Probab=99.78  E-value=4.9e-19  Score=129.49  Aligned_cols=150  Identities=13%  Similarity=0.153  Sum_probs=128.1

Q ss_pred             CceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcccceeecccccceeEEEEccCCCEEEEEeCCCcEE
Q psy18074         25 SPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQ-GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLR  102 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  102 (197)
                      ..+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +.+++.+ .+|..+|..++|+.+|+.+++++.|+.++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeee
Confidence            45677899999999999999 788999999999999999976 7777776 78999999999999999999999999999


Q ss_pred             EEEcCCCceeeeeccccccccccccccceecccCccc-c-eeeeecCcceEEeecchhhHHHHhHhHhhhhhhhcCCCCC
Q psy18074        103 VWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-R-RIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG  180 (197)
Q Consensus       103 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (197)
                      +||+.+|+++..+.....         +.++.|+||+ + +|+.+++..+..|+.+..+-......+-...+.+.+-..+
T Consensus       284 lwDtETG~~~~~f~~~~~---------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLDKV---------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             eeccccceEEEEEecCCC---------ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence            999999999988876654         4899999987 3 4446667789999999999888888777777777776665


Q ss_pred             CCCC
Q psy18074        181 TVPQ  184 (197)
Q Consensus       181 ~~~~  184 (197)
                      ..+.
T Consensus       355 ~rFi  358 (503)
T KOG0282|consen  355 RRFI  358 (503)
T ss_pred             ceEe
Confidence            5443

>KOG0274|consensus

Probab=99.78  E-value=1.6e-17  Score=128.42  Aligned_cols=141  Identities=11%  Similarity=0.194  Sum_probs=123.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      +.++++|+.|.++++||..+ +.+...+.+|.+.+.++...  ...+++|+.|.+|++|++.++..+..+ .+|.+.|++
T Consensus       261 ~~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~  336 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNC  336 (537)
T ss_pred             CCEEEEEecCCcEEeEecCC-CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe-ccccccEEE
Confidence            67899999999999999887 78999999999999999874  466788999999999999999988887 448999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      +..+  +.++++|+.|+.|.+||+.+++++..+.+|...        |.++.+.+. ..+.+++ +..+.+|++...
T Consensus       337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~--------V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR--------VYSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce--------EEEEEecCc-ceEEeeeeccceEeecCCch
Confidence            9987  889999999999999999999999999998765        678877665 5555554 568999999888

>KOG0302|consensus

Probab=99.77  E-value=1.6e-17  Score=118.63  Aligned_cols=152  Identities=15%  Similarity=0.220  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC---cccceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG---HSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~   77 (197)
                      +..+|++++-||.|+|||++.. ..+......|.+.|..+.|+-+-.+|++|+.||.++|||+++-   ..+..+ .-|.
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk  347 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHK  347 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-Eecc
Confidence            5678999999999999999963 2344445899999999999998889999999999999999863   334444 5688


Q ss_pred             cceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCce--------eeeeccccccccccc--cccceecccCcccc-eeeee
Q psy18074         78 QHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEK--------LGYVNNKQRQALDYS--ESLKQKYAHHPQIR-RIARH  145 (197)
Q Consensus        78 ~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~-~l~~~  145 (197)
                      .+|+++.|+|. ...+++++.|..|.+||+.-..-        ...+..-.++.+..|  +..+..+.|+++.- +|++.
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT  427 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST  427 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence            99999999995 56778889999999999863211        111111122222222  33467888998532 33343


Q ss_pred             cCcceEEee
Q psy18074        146 RQVPRHIYN  154 (197)
Q Consensus       146 ~~~~~~i~~  154 (197)
                      ..+...||.
T Consensus       428 a~dGfnVfk  436 (440)
T KOG0302|consen  428 AIDGFNVFK  436 (440)
T ss_pred             cccceeEEE
Confidence            444455553

>KOG0313|consensus

Probab=99.77  E-value=1.1e-17  Score=119.41  Aligned_cols=150  Identities=15%  Similarity=0.233  Sum_probs=119.8

Q ss_pred             CccEEEEEcCCCcEEEEEccC------------------------CCCceeecccCCCCeEEEEECCCCCEEEEEeCCCc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ------------------------LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKS   57 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~------------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~   57 (197)
                      +|..+++|+.|..|.+|+...                        ...|+..+.+|..+|.++.|++ ...+++++-|.+
T Consensus       204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT  282 (423)
T KOG0313|consen  204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT  282 (423)
T ss_pred             CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccce
Confidence            688999999999999999210                        0136667899999999999997 778899999999


Q ss_pred             EEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc
Q psy18074         58 LRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        58 v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      |+.||+.++.........  ...++++.+|..++|++|+.|..+++||.+++..-..     ...+.+|.++|..+.|+|
T Consensus       283 Ik~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-----~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  283 IKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-----SQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             EEEEEeecccceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCcee-----EEeeecchhhhhheecCC
Confidence            999999999887766444  6789999999999999999999999999997643211     122344555799999999


Q ss_pred             cc-ceeeeec-CcceEEeecchhh
Q psy18074        138 QI-RRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       138 ~~-~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .. ..+++++ ++.+.+|+.+..+
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCC
Confidence            55 4455655 5588999998766

>KOG2096|consensus

Probab=99.77  E-value=2e-17  Score=116.04  Aligned_cols=178  Identities=13%  Similarity=0.194  Sum_probs=134.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---CCcc---ccee-ec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH---QGHS---RDIY-HT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~---~~~~---~~~~-~~   74 (197)
                      .+.+|++++.|..|.+|+++  ++.+..+...+..-...+.||+|+++++++....|++|.+-   .|..   .+.+ ..
T Consensus       198 ~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk  275 (420)
T KOG2096|consen  198 NAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK  275 (420)
T ss_pred             CceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence            46799999999999999998  67777877777778888999999999999999999999874   3432   2222 57


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCC----CceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA----SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      +|...|...+|+++.+.+++.+.||.+++||+.-    ++-...+.... ..+.-..+....++.+|.|+.||.+....+
T Consensus       276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~gs~l  354 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDSLAVSFGSDL  354 (420)
T ss_pred             cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence            8999999999999999999999999999999852    22222222111 112222233347899999999999988899


Q ss_pred             EEeecchhhHHHHh-HhHhhhhhhhcCCCCCCC
Q psy18074        151 HIYNAQAEHRAIRS-KQKRKESNKRTHSAPGTV  182 (197)
Q Consensus       151 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  182 (197)
                      .+|..+..+..... ..+...+..+.++..+.-
T Consensus       355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             EEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence            99998876654433 555667777887776553

>KOG1407|consensus

Probab=99.77  E-value=1.8e-17  Score=113.15  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=115.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+|+.-+..|+|.|..... -+++..+.+|.....|+.|+|+|++|++|+.|..+.+||+..--+++.+ ..+.-+|.
T Consensus       158 ~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRldwpVR  235 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRLDWPVR  235 (313)
T ss_pred             CCCEEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccccCceE
Confidence            456666666779999998876 4889999999999999999999999999999999999999988887777 44667899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      .++|+.+|++||+++.|..|-|=++.+|..+..++....         ...++|+|...+||-
T Consensus       236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---------t~tVAWHPk~~LLAy  289 (313)
T KOG1407|consen  236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---------TFTVAWHPKRPLLAY  289 (313)
T ss_pred             EEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---------ceeEEecCCCceeeE
Confidence            999999999999999999999999999999888765544         479999999888883

>KOG4283|consensus

Probab=99.77  E-value=9.5e-18  Score=116.53  Aligned_cols=160  Identities=19%  Similarity=0.244  Sum_probs=125.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT---GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      |.-+|.+++.|.++++||..+. +....+ ..++.|.+-+|||-   ..++++|..+-.|++.|+.+|.....+ .+|.+
T Consensus       113 DtGmFtssSFDhtlKVWDtnTl-Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-sGHr~  189 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTL-QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-SGHRD  189 (397)
T ss_pred             cCceeecccccceEEEeecccc-eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-ccccC
Confidence            5668899999999999999873 444444 45788999999994   336678888899999999999987776 78999


Q ss_pred             ceeEEEEccCCCEE-EEEeCCCcEEEEEcCCC-ceeeeecccc---ccccc---cccccceecccCcccceeee-ecCcc
Q psy18074         79 HVTHTVWSLDNKFV-ISASDEMNLRVWKAHAS-EKLGYVNNKQ---RQALD---YSESLKQKYAHHPQIRRIAR-HRQVP  149 (197)
Q Consensus        79 ~v~~v~~~~~~~~l-~~~~~dg~i~vwd~~~~-~~~~~~~~~~---~~~~~---~~~~~v~~~~~s~~~~~l~~-~~~~~  149 (197)
                      .|.++.|+|...++ ++|+.||.|++||++.. .+...+..+.   ...+.   -+...+..++|+.++.++++ +.++.
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            99999999988875 59999999999999854 4444444433   12222   23557899999999999985 55668


Q ss_pred             eEEeecchhhHHHHh
Q psy18074        150 RHIYNAQAEHRAIRS  164 (197)
Q Consensus       150 ~~i~~~~~~~~~~~~  164 (197)
                      +.+|+.......+..
T Consensus       270 ~r~wn~~~G~ntl~~  284 (397)
T KOG4283|consen  270 IRVWNMESGRNTLRE  284 (397)
T ss_pred             eEEeecccCcccccc
Confidence            899999888776544

>KOG0303|consensus

Probab=99.76  E-value=1.2e-17  Score=119.83  Aligned_cols=147  Identities=11%  Similarity=0.167  Sum_probs=117.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCC------CCceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL------NSPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      +.+.||+|+.|.+|.+|.+...      ..++..+.+|...|..+.|+|.. +.|++++.|..|.+||+.+|+.+..+  
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--  170 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--  170 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--
Confidence            5678999999999999998632      25778899999999999999964 57889999999999999999977665  


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec----Ccce
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR----QVPR  150 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~~  150 (197)
                      .|...|.+++|+.||.++++.+.|..|+|||.++++.+..-..|.+..       ....-|-.+|..+.+|.    +..+
T Consensus       171 ~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k-------~~Raifl~~g~i~tTGfsr~seRq~  243 (472)
T KOG0303|consen  171 DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK-------PARAIFLASGKIFTTGFSRMSERQI  243 (472)
T ss_pred             CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC-------cceeEEeccCceeeeccccccccce
Confidence            488999999999999999999999999999999999887765555432       13445666777555443    2345


Q ss_pred             EEeecch
Q psy18074        151 HIYNAQA  157 (197)
Q Consensus       151 ~i~~~~~  157 (197)
                      .+|+...
T Consensus       244 aLwdp~n  250 (472)
T KOG0303|consen  244 ALWDPNN  250 (472)
T ss_pred             eccCccc
Confidence            6666543

>KOG0646|consensus

Probab=99.76  E-value=1.1e-16  Score=116.97  Aligned_cols=172  Identities=10%  Similarity=0.049  Sum_probs=133.3

Q ss_pred             CccEEEEEcCCCcEEEEEccC--------CCCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ--------LNSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      ||.+|++|+.||.|.+|++..        .-.+...+..|.-+|+++...+-  ..++++++.|.++++||+..|.++..
T Consensus       134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt  213 (476)
T KOG0646|consen  134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT  213 (476)
T ss_pred             CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence            789999999999999998632        12577888999999999998775  35899999999999999999988777


Q ss_pred             eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--------eecccccccccccc--ccceecccCcccce
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG--------YVNNKQRQALDYSE--SLKQKYAHHPQIRR  141 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~--~~v~~~~~s~~~~~  141 (197)
                      +..+  ..+.+++.+|-++.++.|+.+|.|.+.++.+-....        .........+.++.  +.|+|++.+-||..
T Consensus       214 i~fp--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl  291 (476)
T KOG0646|consen  214 ITFP--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL  291 (476)
T ss_pred             EecC--CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE
Confidence            6444  689999999999999999999999998875432111        12222234444553  38999999999999


Q ss_pred             eeeecCc-ceEEeecchhhHHHHhHhHhhhhhhhc
Q psy18074        142 IARHRQV-PRHIYNAQAEHRAIRSKQKRKESNKRT  175 (197)
Q Consensus       142 l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (197)
                      |++|+.+ .+.||+....+........+-..++..
T Consensus       292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             EEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence            9998865 789999987776666554444444433

>KOG1446|consensus

Probab=99.76  E-value=1.8e-16  Score=110.71  Aligned_cols=148  Identities=15%  Similarity=0.186  Sum_probs=114.9

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec----------------
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT----------------   74 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~----------------   74 (197)
                      .|.+|+..++.+ .+.++.+.+|...|.+++.+|-+..+++++.|++|++||++...+...+..                
T Consensus        78 ~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   78 EDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             CCCceEEEEeec-CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence            378999999987 688999999999999999999999999999999999999995433322110                


Q ss_pred             ----------------------------ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccc
Q psy18074         75 ----------------------------KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYS  126 (197)
Q Consensus        75 ----------------------------~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  126 (197)
                                                  +.....+.+.|+|||++++.++..+.+++.|.-+|..+..+........   
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~---  233 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN---  233 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC---
Confidence                                        0134567788888888888888888888888888887777766554311   


Q ss_pred             cccceecccCcccceeeeecC-cceEEeecchhhHHHHh
Q psy18074        127 ESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHRAIRS  164 (197)
Q Consensus       127 ~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~~~~~  164 (197)
                        ..-..+|+||++++.++++ +.+.+|++...+.....
T Consensus       234 --~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  234 --LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             --cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence              1136789999999998887 58999999766554433

>KOG0639|consensus

Probab=99.75  E-value=5.3e-18  Score=125.25  Aligned_cols=147  Identities=12%  Similarity=0.133  Sum_probs=121.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .|.+++++++.||+|.+||+.+ ...++.|.+|...+.||.++++|..|.+|+-|.+|+.||++.++.+.....  .+.|
T Consensus       519 pDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQI  595 (705)
T KOG0639|consen  519 PDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQI  595 (705)
T ss_pred             CccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhh
Confidence            3778999999999999999997 578999999999999999999999999999999999999999987665422  3789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~  159 (197)
                      .++.++|.+.+++.|...+.+.|..... ...+.+..++        ++|-++.|++.|+++++ |-++-...|.....-
T Consensus       596 fSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlhe--------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  596 FSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHE--------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             eecccCCCccceeeecccCcEEEEecCC-ccceeecccc--------cEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence            9999999999999999999998887653 3334444444        45779999999999985 445556777665443

>KOG1273|consensus

Probab=99.75  E-value=5.8e-17  Score=113.52  Aligned_cols=147  Identities=15%  Similarity=0.155  Sum_probs=116.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK------   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------   75 (197)
                      .|.++|+|+.||.|.|||+.+ ..+-+.+.+|-.+|++++||++|+.|++++.|..+.+||+..|.++..+...      
T Consensus        34 ~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~  112 (405)
T KOG1273|consen   34 WGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA  112 (405)
T ss_pred             CcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence            478999999999999999998 4677889999999999999999999999999999999999987654432100      


Q ss_pred             ----------------------------c-----------ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         76 ----------------------------R-----------MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        76 ----------------------------~-----------~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                                                  |           .....+..|.+.|+++++|...|.+.++|..+-+++..+.
T Consensus       113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r  192 (405)
T KOG1273|consen  113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR  192 (405)
T ss_pred             eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeee
Confidence                                        0           1112233477889999999999999999999988877665


Q ss_pred             cccccccccccccceecccCcccceeeeecCc-ceEEeecc
Q psy18074        117 NKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQ  156 (197)
Q Consensus       117 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~  156 (197)
                      -...+       .|..+.++-.|+.++....+ -+..|+..
T Consensus       193 its~~-------~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  193 ITSVQ-------AIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             echhe-------eeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            43311       25788899999999876544 66888776

>KOG0288|consensus

Probab=99.75  E-value=2.6e-18  Score=123.72  Aligned_cols=182  Identities=14%  Similarity=0.109  Sum_probs=132.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--------   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------   73 (197)
                      ++..+++++.|+.+++|+... .+...++.+|...|+++.|.-....+++|+.|.++++||+....+.....        
T Consensus       230 ~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI  308 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDI  308 (459)
T ss_pred             CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccce
Confidence            577889999999999999987 57788999999999999997766668888888777777776543322210        


Q ss_pred             --------cc---------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccc
Q psy18074         74 --------TK---------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD  124 (197)
Q Consensus        74 --------~~---------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  124 (197)
                              .+                     -.+.|+++..++++..+++++.|.++.+.|+++.+....+....-.   
T Consensus       309 ~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k---  385 (459)
T KOG0288|consen  309 VCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK---  385 (459)
T ss_pred             EecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc---
Confidence                    11                     1367899999999999999999999999999988877766543221   


Q ss_pred             cccccceecccCcccceeeeec-CcceEEeecchhhHHHHhHhHhh--hhhhhcCCCCCCCCCchhh
Q psy18074        125 YSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHRAIRSKQKRK--ESNKRTHSAPGTVPQTKER  188 (197)
Q Consensus       125 ~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  188 (197)
                       ..+.++.+.|||++.++|+|+ ++.++||+....+.+........  .+....+++.+.-.....|
T Consensus       386 -~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  386 -CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             -cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence             122367889999999999776 55999999988876654433322  2445556655544444333

>KOG1446|consensus

Probab=99.74  E-value=1.9e-16  Score=110.57  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=137.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC--CCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY--DKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +|.++++++.|..+++||... +..+..+..+.-.+..++|-.....++.++.  |..|+..++.+++.++.+ .+|...
T Consensus        25 ~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~  102 (311)
T KOG1446|consen   25 DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKR  102 (311)
T ss_pred             CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCce
Confidence            688999999999999999987 5777777766667888888666666666665  889999999999998887 889999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      |++++.+|-+..+++++.|++|++||++..++...+.....          ...+|.|+|-++|.+.+. .+.+|+++..
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----------pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----------PIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----------cceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            99999999999999999999999999998887776655443          467899999999987776 8899999866


Q ss_pred             hHHH-----HhHhHhhhhhhhcCCCCCCCC
Q psy18074        159 HRAI-----RSKQKRKESNKRTHSAPGTVP  183 (197)
Q Consensus       159 ~~~~-----~~~~~~~~~~~~~~~~~~~~~  183 (197)
                      ...-     .......+.+.+++++.|...
T Consensus       173 dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i  202 (311)
T KOG1446|consen  173 DKGPFTTFSITDNDEAEWTDLEFSPDGKSI  202 (311)
T ss_pred             CCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence            4422     122445667778888877644

>KOG0639|consensus

Probab=99.74  E-value=1e-17  Score=123.72  Aligned_cols=150  Identities=11%  Similarity=0.083  Sum_probs=120.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC-ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS-PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .||+.|++|+.-.++.|||+..... ....+....-.+.+++.+||.+..+++..||.|.|||+.+...++.+ .+|...
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDG  553 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDG  553 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-cCCCCC
Confidence            3789999999999999999975321 12223333346788999999999999999999999999988888777 789999


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      +.|+..++||..|-+|+.|++|+-||++.+..+......         +.|.++.++|++.+++.|... .+.+....+.
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---------SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---------hhheecccCCCccceeeecccCcEEEEecCCc
Confidence            999999999999999999999999999988765443222         226899999999999988865 6666666555


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      ++
T Consensus       625 ~k  626 (705)
T KOG0639|consen  625 EK  626 (705)
T ss_pred             cc
Confidence            44

>KOG0306|consensus

Probab=99.74  E-value=7.1e-17  Score=124.09  Aligned_cols=177  Identities=12%  Similarity=0.092  Sum_probs=134.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-----Ccccceeec--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-----GHSRDIYHT--   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~--   74 (197)
                      .++++++|..+|.+.+||+.. ...+....+|++.+++++.+||+..+++|+.|.+|++||..-     |.....+..  
T Consensus       423 gd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~  501 (888)
T KOG0306|consen  423 GDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH  501 (888)
T ss_pred             CCceEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence            467889999999999999986 567778889999999999999999999999999999999752     221111111  


Q ss_pred             ----ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-c
Q psy18074         75 ----KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-P  149 (197)
Q Consensus        75 ----~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~  149 (197)
                          .-...|.|+++||||++|+.+-.|++++||-+.+.+-.-.+.+|.-        +|.|+..|||++.+++++.+ +
T Consensus       502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL--------PV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL--------PVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc--------ceeEEeccCCcCeEEeccCCCc
Confidence                1246899999999999999999999999999998877666766654        47899999999999987755 9


Q ss_pred             eEEeecchhhHHHHhHhHhhhhhhhcCCCCCCCCCchh
Q psy18074        150 RHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKE  187 (197)
Q Consensus       150 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (197)
                      +.||=+.-+..-...-.+....-..++-+....++...
T Consensus       574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g  611 (888)
T KOG0306|consen  574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG  611 (888)
T ss_pred             eEEeccccchhhhhhhcccCceeEEEEcccceeEEEec
Confidence            99998876655444433333333344444333333333

>KOG0278|consensus

Probab=99.73  E-value=2.5e-18  Score=116.89  Aligned_cols=147  Identities=15%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ....++++.|-+.++||.-+ +..+..+ .|..-|.+++|+.|..+|++|+.+..+++||+...+....-..+|.+.|..
T Consensus        71 a~~aasaaadftakvw~a~t-gdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~  148 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVT-GDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT  148 (334)
T ss_pred             hhhhhhhcccchhhhhhhhh-hhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence            34557788899999999877 4556666 578889999999999999999999999999998776544445789999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      +-|....+.++++.+|++|++||.+++..++.+.....         |.++.++++|++|.......+.+|++..-..
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~---------VtSlEvs~dG~ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP---------VTSLEVSQDGRILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC---------CcceeeccCCCEEEEecCceeEEeccccccc
Confidence            99999999999999999999999999999988876554         6899999999999999989999999865544

>KOG0274|consensus

Probab=99.73  E-value=9e-17  Score=124.24  Aligned_cols=145  Identities=13%  Similarity=0.250  Sum_probs=120.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .+.++++|+.|.+|++|++.+ +..+..+.+|.++|.++..+  +..+++|+.|+.|.+||+.+++++..+ .+|...|.
T Consensus       300 ~~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl-~gH~~~V~  375 (537)
T KOG0274|consen  300 DPFLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL-SGHTGRVY  375 (537)
T ss_pred             cCceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee-cCCcceEE
Confidence            356778899999999999997 67888888899999999996  899999999999999999999998887 66999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++.+.+. ..+++|+.|+.|++||+.+. +++.++.++...        +..  ....++.|.++. +..+.+|+....+
T Consensus       376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--------v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--------VSS--LLLRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--------ccc--cccccceeEeccccccEEEeecccCc
Confidence            9988665 88999999999999999999 888888777653        222  334556666554 5589999876554


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       445 ~~  446 (537)
T KOG0274|consen  445 CL  446 (537)
T ss_pred             ee
Confidence            43

>KOG2048|consensus

Probab=99.73  E-value=2.5e-16  Score=119.70  Aligned_cols=183  Identities=8%  Similarity=0.019  Sum_probs=141.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v   80 (197)
                      |+..|.+.+.+|.|.-||+.+ .++...+....+.|++++.+|.+..++.|+.||.++.++...+...... .....+.|
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             cCCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence            567788888999999999998 4677778788899999999999999999999998888888776653322 12234789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      .+++|+|++..++.|+.||.|++||+.++.............-......|.++.|-.++..++..+.+.+.+|+......
T Consensus       158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence            99999999999999999999999999999887744333322222234458888888888888777788999999988877


Q ss_pred             HHHhHhHhhhhhhhcCCCCCCCCCc
Q psy18074        161 AIRSKQKRKESNKRTHSAPGTVPQT  185 (197)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~  185 (197)
                      .+.......+......+......+.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFS  262 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEE
Confidence            7777666666666665555443333

>KOG0299|consensus

Probab=99.73  E-value=7.2e-17  Score=117.69  Aligned_cols=149  Identities=12%  Similarity=0.112  Sum_probs=123.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||.+|++|+.|..|.||+.++ ..++..+.+|.+.|.+++|......+++++.|+.+++|++.....+..+ -+|.+.|
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v  289 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL-YGHQDGV  289 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH-hCCccce
Confidence            4899999999999999999998 5788899999999999999988889999999999999999988777766 5688999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      ..+....-++.+-.|+.|+++++|++.. ...-.+.++..        .+.|++|-.+..++..+.++.+.+|.+.+.+-
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~--------sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG--------SIDCVAFINDEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             eeechhcccceEEeccccceeEEEeccc-cceeeeeCCCC--------CeeeEEEecccceeeccCCceEEEeeecccCc
Confidence            9998888888888888999999999943 22333444433        26788888876666666667999999876654

>KOG0300|consensus

Probab=99.72  E-value=1.3e-16  Score=112.08  Aligned_cols=149  Identities=19%  Similarity=0.251  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .|..+++++.|.+..+||..+ +.++..+.+|....+.++-+|...++++++.|.+.++||.+..-.....+.+|...|+
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEt-ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT  361 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVET-GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT  361 (481)
T ss_pred             Ccceeeeeeccccceeeeecc-CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence            367899999999999999998 7899999999999999999999999999999999999999955433333588999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      ++.|..+.+ +++|++|.+|++||+++.. ++.++....         +++.++.+..+..||.-.++ .+.+|++...+
T Consensus       362 S~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS---------~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  362 SVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDS---------PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             EEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCC---------ccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            999988765 6899999999999999765 344443332         35778888888888876665 78999987554


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       432 la  433 (481)
T KOG0300|consen  432 LA  433 (481)
T ss_pred             cc
Confidence            43

>KOG2110|consensus

Probab=99.72  E-value=6.3e-16  Score=110.19  Aligned_cols=147  Identities=13%  Similarity=0.146  Sum_probs=112.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEE--eCCCcEEEEECCCCcccceeeccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAG--GYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.|++.-. ..|+|||++++ +++.++..   +...+.++.+++.+.+++.-  ...|.|.+||+.+-.....+ ..|.+
T Consensus        98 ~RLvV~Le-e~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-~aH~~  174 (391)
T KOG2110|consen   98 KRLVVCLE-ESIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-NAHKG  174 (391)
T ss_pred             ceEEEEEc-ccEEEEecccc-eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-EecCC
Confidence            44555544 45999999975 55666544   33445556566666688752  35689999999988877776 47899


Q ss_pred             ceeEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         79 HVTHTVWSLDNKFVISASDEMN-LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      .+.+++|+++|.+||++++.|+ |+|+++.+|+.+..+......      ..+.+++|+|++++|++.+ ...++||++.
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP------VSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee------eEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            9999999999999999999987 789999999999888655442      2378999999999998655 4589999987


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      +..
T Consensus       249 ~~~  251 (391)
T KOG2110|consen  249 KVS  251 (391)
T ss_pred             ccc
Confidence            554

>KOG0294|consensus

Probab=99.71  E-value=9.8e-17  Score=112.21  Aligned_cols=165  Identities=15%  Similarity=0.203  Sum_probs=132.8

Q ss_pred             EEEEEcCCCcEEEEEccCCC-----------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          5 VFTAANEDFNLYSYDIRQLN-----------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      -|++|+....|.-+++....           .+...+..|.+++++++.  ++.++++|+.|-+|+|||++....+..+ 
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l-   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL-   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce-
Confidence            37788888888878765311           124557889999999999  6899999999999999999988776665 


Q ss_pred             cccccceeEEEEccCCC--EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcce
Q psy18074         74 TKRMQHVTHTVWSLDNK--FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPR  150 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~  150 (197)
                      ..|.+.|+++.|.+.-.  .|++|++||.|.+|+...-..+..+.+|...        |+.++.+|.++...+ +.+...
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--------Vt~lsiHPS~KLALsVg~D~~l  151 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--------VTDLSIHPSGKLALSVGGDQVL  151 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--------cceeEecCCCceEEEEcCCcee
Confidence            45789999999998765  8999999999999999998888899888876        789999999987765 556688


Q ss_pred             EEeecchhhHHHHhHhHhhhhhhhcCCCCCC
Q psy18074        151 HIYNAQAEHRAIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      ..|++.+.+.......+..... .++.+.+.
T Consensus       152 r~WNLV~Gr~a~v~~L~~~at~-v~w~~~Gd  181 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKNKATL-VSWSPQGD  181 (362)
T ss_pred             eeehhhcCccceeeccCCccee-eEEcCCCC
Confidence            9999999888766555544443 66665555

>KOG0270|consensus

Probab=99.71  E-value=5.5e-16  Score=112.69  Aligned_cols=147  Identities=10%  Similarity=0.170  Sum_probs=116.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      -++||+|+.|.+|.+||+.+ +++...+..|.+.|.++.|+|. ...|++|+.|++|.+.|.+........ ..-.+.|-
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk~~g~VE  333 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-WKFDGEVE  333 (463)
T ss_pred             ceeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-EEeccceE
Confidence            36899999999999999998 7899999889999999999995 568899999999999999953322222 12236899


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCccc-ceeeeec-CcceEEeecch
Q psy18074         82 HTVWSLDN-KFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        82 ~v~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~~~i~~~~~  157 (197)
                      .++|+|.. ..++++..||+++-+|.++. +++.++..|...        |.++++++.. .++++++ +..+.+|++..
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~--------ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE--------ISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC--------cceEEecCCCCcceeeccccceEEEEeecC
Confidence            99999965 45678899999999999975 788888777664        7899998854 3455444 45889999865


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      ..
T Consensus       406 ~~  407 (463)
T KOG0270|consen  406 DS  407 (463)
T ss_pred             CC
Confidence            43

>KOG0641|consensus

Probab=99.71  E-value=8.9e-16  Score=103.34  Aligned_cols=147  Identities=12%  Similarity=0.175  Sum_probs=120.1

Q ss_pred             ccEEEEE-cCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-cc----
Q psy18074          3 AFVFTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KR----   76 (197)
Q Consensus         3 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~----   76 (197)
                      +.+|+++ ..|.+|++-|... ++....+.+|.+.|.++ ++-++.++++|+.|.+|++||++-+.++..+.. .|    
T Consensus       152 ~~il~s~gagdc~iy~tdc~~-g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGR-GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             ceEEEecCCCcceEEEeecCC-CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence            4566664 4567788888876 68899999999999876 344789999999999999999998887776522 11    


Q ss_pred             -ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEee
Q psy18074         77 -MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYN  154 (197)
Q Consensus        77 -~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~  154 (197)
                       .+.|.+++..|.|++|++|-.|....+||++.++.++.+.++...        |.++.|||...++.+++-+ .+.+-+
T Consensus       230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad--------ir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD--------IRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc--------eeEEEeCCCceEEEEecccceEEEee
Confidence             256899999999999999999999999999999999998887765        7899999999999877644 677777


Q ss_pred             cchhh
Q psy18074        155 AQAEH  159 (197)
Q Consensus       155 ~~~~~  159 (197)
                      +..+-
T Consensus       302 lqgdl  306 (350)
T KOG0641|consen  302 LQGDL  306 (350)
T ss_pred             cccch
Confidence            76543

>KOG0641|consensus

Probab=99.71  E-value=1e-15  Score=103.11  Aligned_cols=148  Identities=18%  Similarity=0.275  Sum_probs=113.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc--C-----CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD--M-----TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-----~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      +|-.|++|+.|.+|++||++- ..++..+..  |     .+.|.+++..|.|+.|++|-.|....+||++.++++..+ .
T Consensus       193 n~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f-~  270 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-H  270 (350)
T ss_pred             cCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee-C
Confidence            467899999999999999985 455555422  2     146999999999999999999999999999999998887 5


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeecCcceEEe
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHRQVPRHIY  153 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~i~  153 (197)
                      +|...|.|+.|+|...|+++++.|..|++-|+.. .....+.   ..++..+.+.+-.+.|+|+. .+|.++.+....+|
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~---~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELP---IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCc---eEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence            6889999999999999999999999999999863 2211111   01112222334577899954 55666667788888


Q ss_pred             ec
Q psy18074        154 NA  155 (197)
Q Consensus       154 ~~  155 (197)
                      .+
T Consensus       347 a~  348 (350)
T KOG0641|consen  347 AL  348 (350)
T ss_pred             cc
Confidence            65

>KOG1445|consensus

Probab=99.71  E-value=3.2e-17  Score=124.33  Aligned_cols=136  Identities=13%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      .|...||+++.||.|++|.+...+      .+...+..|...|+++.|+|- ...|+++++|.+|.+||+.++.....+ 
T Consensus       638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-  716 (1012)
T KOG1445|consen  638 FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-  716 (1012)
T ss_pred             CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-
Confidence            367789999999999999986432      456678899999999999994 567889999999999999998776655 


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCcccceeee
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      .+|.+.|..++|+|+|+.+++.+.||.|++|..++++. +..-.+....    ..   ..+.|.-||++++.
T Consensus       717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt----Rg---ARi~wacdgr~viv  781 (1012)
T KOG1445|consen  717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT----RG---ARILWACDGRIVIV  781 (1012)
T ss_pred             ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC----cc---eeEEEEecCcEEEE
Confidence            78999999999999999999999999999999987653 2222211111    11   34557778877763

>KOG1009|consensus

Probab=99.71  E-value=1.1e-16  Score=115.10  Aligned_cols=144  Identities=20%  Similarity=0.306  Sum_probs=115.3

Q ss_pred             cEEEEEcCCCcEEEEEccCC---C-----CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC--------C--
Q psy18074          4 FVFTAANEDFNLYSYDIRQL---N-----SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------Q--   65 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~---~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~--------~--   65 (197)
                      +.+++|+.|..|++|-+...   +     .....+..|+..|+++.|+|+|..|++|+.+|.+.+|-..        +  
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            47999999999999987531   1     1234577899999999999999999999999999999776        2  


Q ss_pred             ---C--cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         66 ---G--HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        66 ---~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                         .  ..+.....+|...|..++|+|+++++++++.|+.+++||+..|+....+..+...        +..++|.|-++
T Consensus       107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y--------vqgvawDpl~q  178 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY--------VQGVAWDPLNQ  178 (434)
T ss_pred             hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc--------cceeecchhhh
Confidence               1  1111224568889999999999999999999999999999999998888777664        67999999999


Q ss_pred             eeeeecCcc-eEEeec
Q psy18074        141 RIARHRQVP-RHIYNA  155 (197)
Q Consensus       141 ~l~~~~~~~-~~i~~~  155 (197)
                      ++++-+.+. ...+.+
T Consensus       179 yv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  179 YVASKSSDRHPEGFSA  194 (434)
T ss_pred             hhhhhccCcccceeee
Confidence            999655554 334333

>KOG0300|consensus

Probab=99.70  E-value=9.9e-17  Score=112.72  Aligned_cols=163  Identities=12%  Similarity=0.240  Sum_probs=122.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC--------------------
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA--------------------   63 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~--------------------   63 (197)
                      .++.+++.|.+.+||.+.. +.++..+.+|.+.|.+++|++.+.++++++.|++-.||..                    
T Consensus       161 pi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             cceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            3778899999999999998 6889999999999999999999999999998877777752                    


Q ss_pred             --------------------------------------------------------------CCCcccceeeccccccee
Q psy18074         64 --------------------------------------------------------------HQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus        64 --------------------------------------------------------------~~~~~~~~~~~~~~~~v~   81 (197)
                                                                                    ++|+.+..+ .+|....+
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L-tGHd~ELt  318 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL-TGHDSELT  318 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc-cCcchhcc
Confidence                                                                          122222222 34666777


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      .++-+|..+++++++.|.++++||++.. +.+..|.+|.        +.|++..|.-+.+.+..+.+..+.+|+++.++.
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt--------dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT--------DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccchhhcceeeeecccc--------cceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence            8888899999999999999999999821 2233444444        458899999887766665566999999998877


Q ss_pred             HHHhHhHhhhhhhhcC
Q psy18074        161 AIRSKQKRKESNKRTH  176 (197)
Q Consensus       161 ~~~~~~~~~~~~~~~~  176 (197)
                      .+.-..-....|++.-
T Consensus       391 plATIRtdS~~NRvav  406 (481)
T KOG0300|consen  391 PLATIRTDSPANRVAV  406 (481)
T ss_pred             cceeeecCCccceeEe
Confidence            6544444444444443

>KOG1332|consensus

Probab=99.70  E-value=3.7e-16  Score=105.96  Aligned_cols=149  Identities=13%  Similarity=0.191  Sum_probs=114.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCC--cccceeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQG--HSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~   76 (197)
                      -|.+||+++.||+|.||.-..+. ........|...|++++|.|.  |-.|++++.||.|.+.+.+..  -........|
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            48899999999999999987521 234456788999999999995  568899999999999988754  2223334678


Q ss_pred             ccceeEEEEccC---C-----------CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc---
Q psy18074         77 MQHVTHTVWSLD---N-----------KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI---  139 (197)
Q Consensus        77 ~~~v~~v~~~~~---~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---  139 (197)
                      .-.|++++|.|.   |           +.|++|+.|+.|+||+..+++=  .+.    ..+..|.+.|..++|.|..   
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--~~e----~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--KLE----RTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--hhh----hhhhhcchhhhhhhhccccCCC
Confidence            889999999996   5           5689999999999999987621  111    1255666779999999954   


Q ss_pred             -ceeeeec-CcceEEeecc
Q psy18074        140 -RRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus       140 -~~l~~~~-~~~~~i~~~~  156 (197)
                       ..||+++ ++.+.||...
T Consensus       223 ~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ceeeEEecCCCcEEEEEec
Confidence             5677665 5588999876

>KOG0301|consensus

Probab=99.69  E-value=1.2e-15  Score=116.35  Aligned_cols=140  Identities=13%  Similarity=0.187  Sum_probs=115.4

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEE
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTV   84 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~   84 (197)
                      .+++|+.|.+|++|.-   +..++++.+|...|+++++-|+ ..|++++.||.|++|++ +|+++..+ .+|.+.|++++
T Consensus       153 ~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis  226 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSIS  226 (745)
T ss_pred             cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeee-eccceEEEEEE
Confidence            7889999999999965   4668889999999999999874 45889999999999999 56665554 67889999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      ..+++..+++++.|+++++|+..  .+.+.+......        +++..+-++|..++.++|+-+.||...+.+.
T Consensus       227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtts--------iWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTS--------IWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccc--------eEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence            88889999999999999999875  555554433322        5788888999999999999999998875544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=3.6e-15  Score=102.02  Aligned_cols=129  Identities=20%  Similarity=0.348  Sum_probs=93.2

Q ss_pred             cEEEEEccCCCCceeeccc-CCCCeEEEEECCCCCEEEE--EeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         14 NLYSYDIRQLNSPLNVHKD-MTSAVTSVDYSPTGREFVA--GGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      ...+|.++..+.+...+.- ..++|.+++|+|+|..|++  |..++.+.+||++ +..+..+   +...++.+.|+|+|+
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGR  113 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCC
Confidence            3455666433445555533 3567999999999998765  4467799999997 4444443   235778999999999


Q ss_pred             EEEEEeC---CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-------CcceEEeecc
Q psy18074         91 FVISASD---EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-------QVPRHIYNAQ  156 (197)
Q Consensus        91 ~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~i~~~~  156 (197)
                      ++++++.   .|.|.+||.++.+.+.......          +..++|+|||+++++..       +..+.||+..
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~----------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD----------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccccCc----------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            9998764   4679999999888776654322          47899999999999653       3466888874

>KOG0646|consensus

Probab=99.68  E-value=1.7e-15  Score=110.73  Aligned_cols=145  Identities=16%  Similarity=0.197  Sum_probs=117.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-------C--cccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-------G--HSRDI   71 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-------~--~~~~~   71 (197)
                      .+|.+++.|+..|.|++|.+.+ +..+..+.+|-..|+++.|+.||.+|++|+.||.|.+|.+..       .  .....
T Consensus        91 n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~  169 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI  169 (476)
T ss_pred             CCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence            3688999998999999999998 688889999999999999999999999999999999998752       1  11222


Q ss_pred             eecccccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-
Q psy18074         72 YHTKRMQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-  148 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-  148 (197)
                       ...|.-+|+.+...+.  ..++++++.|.++++||+..+..+.++.....         +.+++..|-.+.+..|... 
T Consensus       170 -f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s---------i~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  170 -FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS---------IKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             -eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc---------ceeEEEcccccEEEecCCcc
Confidence             4678889999887764  46789999999999999999988777655443         5899999988888866644 


Q ss_pred             ceEEeecc
Q psy18074        149 PRHIYNAQ  156 (197)
Q Consensus       149 ~~~i~~~~  156 (197)
                      .+.+..+.
T Consensus       240 ~I~~~~~~  247 (476)
T KOG0646|consen  240 KIFQNLLF  247 (476)
T ss_pred             eEEeeehh
Confidence            55554443

>KOG0771|consensus

Probab=99.68  E-value=8.6e-16  Score=110.98  Aligned_cols=152  Identities=16%  Similarity=0.234  Sum_probs=119.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--------   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------   73 (197)
                      ||..+++|+.||++++|+... ...+.....|.+.|.++.|+|||..|++.+.| ..++|+..+|..+....        
T Consensus       155 ~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~  232 (398)
T KOG0771|consen  155 DGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMF  232 (398)
T ss_pred             CCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhh
Confidence            678999999999999999665 35566677899999999999999999999999 89999998772211100        


Q ss_pred             --------------------cc-------------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         74 --------------------TK-------------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        74 --------------------~~-------------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                                          ..                         ....|.+++.+++|++++.|+.||.|.+++..+
T Consensus       233 ~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~  312 (398)
T KOG0771|consen  233 SSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS  312 (398)
T ss_pred             hhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence                                00                         124789999999999999999999999999988


Q ss_pred             CceeeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhhHHH
Q psy18074        109 SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEHRAI  162 (197)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~~~~  162 (197)
                      .+.++..+..+..       .|+.+.|+||.+++++ +++....+..+..+++..
T Consensus       313 lq~~~~vk~aH~~-------~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~  360 (398)
T KOG0771|consen  313 LQRLQYVKEAHLG-------FVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQ  360 (398)
T ss_pred             eeeeEeehhhhee-------eeeeEEEcCCcCcccccccCCceeEEEEeeccccc
Confidence            8877665544332       3799999999999985 445577887777655443

>KOG4283|consensus

Probab=99.68  E-value=1.4e-15  Score=105.91  Aligned_cols=148  Identities=9%  Similarity=0.138  Sum_probs=116.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC---------cee-----ecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS---------PLN-----VHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~-----~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      .+|.++++|+.||.|-+||+.....         ...     .-.+|.-.|.++.|-| |.-.+.+++.|.++++||..+
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            3789999999999999999874220         000     1124556799999999 556788899999999999998


Q ss_pred             CcccceeecccccceeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         66 GHSRDIYHTKRMQHVTHTVWSLD---NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        66 ~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ......+.-+  +.|++-+|+|-   .-++|+|..+-.|++.|+.+|....++.+|...        |-.+.|+|...++
T Consensus       134 lQ~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~--------vlaV~Wsp~~e~v  203 (397)
T KOG4283|consen  134 LQEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG--------VLAVEWSPSSEWV  203 (397)
T ss_pred             ceeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc--------eEEEEeccCceeE
Confidence            8766665333  78999999984   346778888999999999999999999998877        5589999987766


Q ss_pred             e-eec-CcceEEeecchh
Q psy18074        143 A-RHR-QVPRHIYNAQAE  158 (197)
Q Consensus       143 ~-~~~-~~~~~i~~~~~~  158 (197)
                      . +++ ++.+.+|+.++-
T Consensus       204 LatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  204 LATGSADGAIRLWDIRRA  221 (397)
T ss_pred             EEecCCCceEEEEEeecc
Confidence            5 554 568999999765

>KOG0643|consensus

Probab=99.68  E-value=1.6e-15  Score=104.11  Aligned_cols=113  Identities=18%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             eeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         27 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        27 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      ...+..+.+.++.+.|+|-+..|++|..||.|.+||+++|.........|...|+.++++||..++++++.|.+-++||.
T Consensus       140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            33444556778999999999999999999999999999997766555678889999999999999999999999999999


Q ss_pred             CCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074        107 HASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                      .+-+.+.++....+         |++.+++|-...++.+...
T Consensus       220 ~tl~v~Kty~te~P---------vN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  220 RTLEVLKTYTTERP---------VNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             cceeeEEEeeeccc---------ccceecccccceEEecCCc
Confidence            99998888876554         7899999977777755544

>KOG1034|consensus

Probab=99.67  E-value=3.5e-16  Score=110.09  Aligned_cols=153  Identities=11%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccee--ecccccce
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHV   80 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~~v   80 (197)
                      -++|+|+.-|.|++.|+.+ .+....+.+|.+.|..+.++|+. +++++++.|..|++|++++..++..+  ..+|.+.|
T Consensus       106 p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             eeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            4677788899999999987 67888899999999999999975 67889999999999999999998887  56799999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee------cc------------cccc--ccccccccceecccCcccc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV------NN------------KQRQ--ALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~------------~~~~--~~~~~~~~v~~~~~s~~~~  140 (197)
                      .++.|+++|.++++++.|..+++|++...+-...+      ..            +.+.  .-..|...|.|+.|-.  .
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d  262 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D  262 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h
Confidence            99999999999999999999999999732211110      00            0000  1112234566666654  5


Q ss_pred             eeeeec-CcceEEeecchhh
Q psy18074        141 RIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       141 ~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++.+-+ ++.+..|...+.+
T Consensus       263 ~ilSkscenaI~~w~pgkl~  282 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLE  282 (385)
T ss_pred             heeecccCceEEEEecchhh
Confidence            566544 4578888875443

>KOG1408|consensus

Probab=99.67  E-value=2.9e-15  Score=115.21  Aligned_cols=148  Identities=11%  Similarity=0.171  Sum_probs=115.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEE-----------------------------------------
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVD-----------------------------------------   41 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~-----------------------------------------   41 (197)
                      .++||+|+.|.-|++||....-.+++++.+|...|+++.                                         
T Consensus       516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence            357888999999999996532344555555555555444                                         


Q ss_pred             --------ECCCCCEEEEEeCCCcEEEEECCCCcccceee--cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         42 --------YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        42 --------~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                              ..|...++++++.|+.|+||++.+|+....|.  ..|.+..--+...|.|.|+++.+.|.++.++|+.+|++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence                    44555566667778999999999999888873  34556778899999999999999999999999999999


Q ss_pred             eeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074        112 LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      +..+.+|...        |+.+.|.+|-+.|++.+ ++.+.||.+...
T Consensus       676 vA~m~GHsE~--------VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  676 VAQMTGHSEA--------VTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hhhhcCcchh--------eeeeeecccchhheeecCCceEEEEECchh
Confidence            9998888764        78999999998888554 568899998753

>KOG1036|consensus

Probab=99.67  E-value=4.1e-15  Score=103.75  Aligned_cols=144  Identities=16%  Similarity=0.230  Sum_probs=109.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ...|+++++||.+++||....  .+.....|..++.+++|.+ ...+++|+.||.|+.+|+.++.....  ..|...+.|
T Consensus        25 ~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~c   99 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRC   99 (323)
T ss_pred             CCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee--ccCCCceEE
Confidence            456777789999999999852  3334447899999999986 66789999999999999998876544  467789999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhHH
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~  161 (197)
                      +.+++....+++|+.|+.|++||.+.......+.....         |.++..+.+ ++++.+.+..+.+|+++.....
T Consensus       100 i~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kk---------Vy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen  100 IEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKK---------VYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEP  168 (323)
T ss_pred             EEeeccCCeEEEcccCccEEEEeccccccccccccCce---------EEEEeccCC-EEEEeecCceEEEEEcccccch
Confidence            99999888999999999999999997444443333221         455544322 4444566778999999877554

>KOG1274|consensus

Probab=99.67  E-value=2.9e-15  Score=117.42  Aligned_cols=156  Identities=12%  Similarity=0.167  Sum_probs=126.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ..+.|++|+.+++|.+|.+.. ...-..+....-++.+++++.+|++++.|+.|-.|++-++.+......+ .+|..+|.
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps-~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rgh~apVl  142 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPS-GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RGHDAPVL  142 (933)
T ss_pred             cccceEEeeccceEEEeeCCC-CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cccCCcee
Confidence            356899999999999999986 3444456666789999999999999999999999999999988776665 78999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc-cceeeeecCcceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ-IRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~i~~~~~~~  159 (197)
                      ++.|+|.+.+||+.+.||.|++||+.++....++..-...--......+..++|+|+ |.+++.+.++.+.+|......
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence            999999999999999999999999998887776654332111111345678899998 667777888899999876543

>KOG0301|consensus

Probab=99.67  E-value=1.1e-15  Score=116.51  Aligned_cols=134  Identities=16%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      +++|+.|.++++|...   ++...+.+|+..|++++.-|++ .++||+.|..|++|.-  ++.+.++ .+|...|+.+++
T Consensus       115 ~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf-~gHtD~VRgL~v  187 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF-SGHTDCVRGLAV  187 (745)
T ss_pred             eEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh-ccchhheeeeEE
Confidence            8999999999999875   4566799999999999999987 8899999999999986  5566666 679999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccC-cccceeeeecCcceEEeecc
Q psy18074         86 SLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH-PQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        86 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~i~~~~  156 (197)
                      -+++ .+++++.||.|++|++ +|+.+..+.+|..-        +++++.. +++..+.+|.+..+.||+..
T Consensus       188 l~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~--------vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  188 LDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF--------VYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ecCC-CeEeecCCceEEEEec-cCceeeeeeccceE--------EEEEEecCCCCeEEEecCCceEEEeecC
Confidence            8764 5689999999999999 68888888877764        6788844 45555557778899999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.67  E-value=1.1e-14  Score=106.19  Aligned_cols=141  Identities=9%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++++.|+.|++||+.+ +.....+..+. .+.++.|+|++..+ ++++.++.|++||..+++....+...  ..+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTAT-LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCC-CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCcc
Confidence            46789999999999999986 46666666543 46789999999876 56678899999999988765544322  3457


Q ss_pred             EEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-c-eEEeecc
Q psy18074         82 HTVWSLDNKFVIS-ASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-P-RHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~-~~i~~~~  156 (197)
                      .++|+|+++.+++ ++.++.+++||+.+++.+..+.....         +..++|+|+|.+++.+... . +.+|+..
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---------PEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---------cceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence            7899999998764 45689999999998776665543221         3678999999998866654 2 3455654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036|consensus

Probab=99.66  E-value=2.2e-15  Score=105.13  Aligned_cols=136  Identities=9%  Similarity=0.153  Sum_probs=107.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--------   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------   73 (197)
                      |...+++|+.||+|+.+|+.+  .....+..|..++.++..++....+++|+-|+.|++||.+.......+.        
T Consensus        64 d~~~~~~G~~dg~vr~~Dln~--~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~  141 (323)
T KOG1036|consen   64 DESTIVTGGLDGQVRRYDLNT--GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM  141 (323)
T ss_pred             CCceEEEeccCceEEEEEecC--CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence            456788999999999999985  3455677899999999999888889999999999999988211100000        


Q ss_pred             ------------------------------------------------------------------------------cc
Q psy18074         74 ------------------------------------------------------------------------------TK   75 (197)
Q Consensus        74 ------------------------------------------------------------------------------~~   75 (197)
                                                                                                    ..
T Consensus       142 ~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  142 DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence                                                                                          00


Q ss_pred             c---------ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         76 R---------MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        76 ~---------~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      |         -.+|++++|+|-...++||+.||.|.+||+.+.+.+..+..-...        |.+++|+.+|..||.+.
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S--------I~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS--------ISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc--------eEEEEeccCCCeEEEEe
Confidence            2         247899999999999999999999999999988888777655433        68999999999999765


Q ss_pred             C
Q psy18074        147 Q  147 (197)
Q Consensus       147 ~  147 (197)
                      .
T Consensus       294 s  294 (323)
T KOG1036|consen  294 S  294 (323)
T ss_pred             c
Confidence            4

>KOG2055|consensus

Probab=99.66  E-value=6.7e-15  Score=107.73  Aligned_cols=180  Identities=13%  Similarity=0.124  Sum_probs=133.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccce---------
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDI---------   71 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~---------   71 (197)
                      ..++++|+.|+.+++|.+... ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+....         
T Consensus       225 ~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~  304 (514)
T KOG2055|consen  225 APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK  304 (514)
T ss_pred             CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc
Confidence            467899999999999998731 234555555578999999999998 888999999999999985432111         


Q ss_pred             ----e----------ecc--------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         72 ----Y----------HTK--------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        72 ----~----------~~~--------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                          |          ..+                    -.+.|..++|+.+++.|+.++.+|.|.+||+++..++..+..
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D  384 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD  384 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence                1          000                    146788999999999999999999999999999988877764


Q ss_pred             ccccccccccccceecccCcccceeeeecCc-ceEEeecchh------hHHHHhHhHhhhhhhhcCCCCCCCCCchhhH
Q psy18074        118 KQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE------HRAIRSKQKRKESNKRTHSAPGTVPQTKERQ  189 (197)
Q Consensus       118 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      ...-.       -+++|.|+++.++|+|++. -+.||+....      +-+.....-...+..+++++..++.....+.
T Consensus       385 ~G~v~-------gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~  456 (514)
T KOG2055|consen  385 DGSVH-------GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV  456 (514)
T ss_pred             cCccc-------eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence            43321       2688889999999999987 5589985433      3344444555667777888877766555443

>KOG4328|consensus

Probab=99.66  E-value=1.6e-15  Score=110.81  Aligned_cols=146  Identities=10%  Similarity=0.162  Sum_probs=108.3

Q ss_pred             ccEEEEEcCCCcEEEEEcc---CCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCccccee------
Q psy18074          3 AFVFTAANEDFNLYSYDIR---QLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIY------   72 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~------   72 (197)
                      -+++|+|...|+|-+||++   ....-+..+..|.++|.++.|+|. ...+++.++||++++-|++.+....++      
T Consensus       200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~  279 (498)
T KOG4328|consen  200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN  279 (498)
T ss_pred             ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence            3789999999999999994   223446677889999999999995 468999999999999998743211100      


Q ss_pred             --------------------------------------ecccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceee
Q psy18074         73 --------------------------------------HTKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLG  113 (197)
Q Consensus        73 --------------------------------------~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~  113 (197)
                                                            ..-|...|++++++|-.. ++++++.|++.+|||+++.....
T Consensus       280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence                                                  011566899999999755 57799999999999998644332


Q ss_pred             e----eccccccccccccccceecccCccc-ceeeeecCcceEEeecc
Q psy18074        114 Y----VNNKQRQALDYSESLKQKYAHHPQI-RRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       114 ~----~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~i~~~~  156 (197)
                      .    ...|.        -.|.+..|||++ +.+.++.+..+.||+..
T Consensus       360 sp~lst~~Hr--------rsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  360 SPFLSTLPHR--------RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             Ccceeccccc--------ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            2    11222        237899999954 54446778899999984

>KOG0649|consensus

Probab=99.64  E-value=3e-14  Score=96.92  Aligned_cols=123  Identities=11%  Similarity=0.164  Sum_probs=92.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .|.++-..|....+++++.|+.++.||+++|+....+ .+|.+.+.++.--.....+++|+.||++++||.++++.+.++
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            4666777777666777778999999999999987776 889999999988444556789999999999999999999887


Q ss_pred             ccccc-cccccc-cccceecccCcccceeeeecCcceEEeecchhhHH
Q psy18074        116 NNKQR-QALDYS-ESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus       116 ~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~  161 (197)
                      ..... ..+..+ ..+|-+++  -+..++++|..-...+|.++.....
T Consensus       195 e~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t  240 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSEST  240 (325)
T ss_pred             ccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCce
Confidence            65443 233222 33344443  4567888888778899998766543

>KOG0290|consensus

Probab=99.64  E-value=2.6e-14  Score=99.36  Aligned_cols=148  Identities=15%  Similarity=0.182  Sum_probs=109.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCC--CCceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccee------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL--NSPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIY------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~------   72 (197)
                      |.+++.+++-|.+-.+||+...  +.....+-+|...|..++|...+ ..|++.+.||.|++||++..+....+      
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            7889999999999999999863  22345567999999999999865 47789999999999999832110000      


Q ss_pred             -----------------------------------------ecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCc
Q psy18074         73 -----------------------------------------HTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASE  110 (197)
Q Consensus        73 -----------------------------------------~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~  110 (197)
                                                               ..+|.+.|+.++|.|. ...++++++|....+||+.+..
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence                                                     1248899999999996 5678899999999999998643


Q ss_pred             eeeeeccccccccccc-cccceecccCc-ccceeeeecCcceEEe
Q psy18074        111 KLGYVNNKQRQALDYS-ESLKQKYAHHP-QIRRIARHRQVPRHIY  153 (197)
Q Consensus       111 ~~~~~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~~~~~~~~~i~  153 (197)
                      .    .......+.|. +..|+.+.|++ ...+|+.+......|.
T Consensus       322 ~----~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  322 R----ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             c----cCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            3    11122222222 44588999996 7789988776655554

>KOG0303|consensus

Probab=99.63  E-value=3.8e-15  Score=107.26  Aligned_cols=126  Identities=10%  Similarity=0.174  Sum_probs=102.5

Q ss_pred             eecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCccc------ceeecccccceeEEEEccC-CCEEEEEeCCC
Q psy18074         28 NVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSR------DIYHTKRMQHVTHTVWSLD-NKFVISASDEM   99 (197)
Q Consensus        28 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~------~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg   99 (197)
                      -.+.+|.++|..++|+| +...|++|+.|.+|.+|.+-.+.+.      .....+|...|--++|+|. .+.|++++.|+
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34678999999999999 4568899999999999999754332      2235688899999999996 56788999999


Q ss_pred             cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhhHHH
Q psy18074        100 NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHRAI  162 (197)
Q Consensus       100 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~~~  162 (197)
                      .|.+|++.+|+.+.++. |.        +.|.+++|+.||.++++... ..+.||+.+..+...
T Consensus       155 ~v~iWnv~tgeali~l~-hp--------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HP--------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             eEEEEeccCCceeeecC-CC--------CeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence            99999999999887765 33        33789999999999996654 488999988775543

>KOG0299|consensus

Probab=99.62  E-value=1e-14  Score=106.66  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..-+++++.|..|.+|++... ..+.++.+|++.|.++.....+..+-+|+.|+++++|++...  ...+..++.+.+-|
T Consensus       256 t~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidc  332 (479)
T KOG0299|consen  256 TSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDC  332 (479)
T ss_pred             ccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeee
Confidence            456889999999999999863 567888899999999988877777777789999999999433  33344677789999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccc----cccccceecccCcccceeeeecCc-ceEEeecch
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD----YSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQA  157 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~  157 (197)
                      ++|-. ...+++|+++|.|.+|++.+.+++.+....++....    .++.+|++++..|...++|+|+.. .+.+|....
T Consensus       333 v~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  333 VAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             EEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence            99964 567899999999999999999888766544332111    123489999999999999988855 889999987


Q ss_pred             hhHH
Q psy18074        158 EHRA  161 (197)
Q Consensus       158 ~~~~  161 (197)
                      .-+.
T Consensus       412 g~r~  415 (479)
T KOG0299|consen  412 GLRA  415 (479)
T ss_pred             Cccc
Confidence            7443

>KOG1188|consensus

Probab=99.62  E-value=1e-14  Score=103.12  Aligned_cols=155  Identities=11%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCC-ceeecccCC-CCeEEEEECCCCCEEEEEe----CCCcEEEEECCCCcc-cceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNS-PLNVHKDMT-SAVTSVDYSPTGREFVAGG----YDKSLRLYLAHQGHS-RDIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~-~~v~~~~~sp~~~~l~~~~----~d~~v~i~d~~~~~~-~~~~~~~   75 (197)
                      +..+.+++.||.|++||++...+ .......+. .+..+++.+-.+..+++|.    .+-.|.+||++.... +..+...
T Consensus        84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS  163 (376)
T KOG1188|consen   84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES  163 (376)
T ss_pred             CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence            56788999999999999996443 333444544 4667777776777777764    467899999998765 6677778


Q ss_pred             cccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc--ceeeeecCcceEE
Q psy18074         76 RMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI--RRIARHRQVPRHI  152 (197)
Q Consensus        76 ~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~i  152 (197)
                      |...|++++|+|. .+.|++|+.||-|.+||+.....-..+..     ...+.+.|.++.|+..+  +...-.......+
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----viN~~sSI~~igw~~~~ykrI~clTH~Etf~~  238 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----VINHGSSIHLIGWLSKKYKRIMCLTHMETFAI  238 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----hhcccceeeeeeeecCCcceEEEEEccCceeE
Confidence            9999999999995 67889999999999999975432111110     01113347889999887  5444444568899


Q ss_pred             eecchhhHHH
Q psy18074        153 YNAQAEHRAI  162 (197)
Q Consensus       153 ~~~~~~~~~~  162 (197)
                      |++.....+.
T Consensus       239 ~ele~~~~~~  248 (376)
T KOG1188|consen  239 YELEDGSEET  248 (376)
T ss_pred             EEccCCChhh
Confidence            9988776433

>KOG1445|consensus

Probab=99.62  E-value=1.3e-15  Score=115.77  Aligned_cols=144  Identities=15%  Similarity=0.187  Sum_probs=112.9

Q ss_pred             EcCCCcEEEEEccCCCCcee-eccc--CCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccc------eeeccccc
Q psy18074          9 ANEDFNLYSYDIRQLNSPLN-VHKD--MTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRD------IYHTKRMQ   78 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~~~~~-~~~~--~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~~~~~   78 (197)
                      ++..|.|-||+++..++.-. .+.+  ....|+.+.|+| |...|+.++.||.|++|.+..+....      .....|..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            45578999999986553322 2221  245799999999 67899999999999999997653322      12466889


Q ss_pred             ceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee-cCcceEEeecc
Q psy18074         79 HVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYNAQ  156 (197)
Q Consensus        79 ~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~~~  156 (197)
                      .|+++.|+|- ...|++++.|.+|++||+.++.....+.+|..+        |..++|||||+.+|+. -++.+.+|.-+
T Consensus       679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq--------If~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ--------IFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc--------eeEEEECCCCcceeeeecCceEEEeCCC
Confidence            9999999994 567889999999999999999988888888877        5699999999999964 45688999876


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ....
T Consensus       751 s~e~  754 (1012)
T KOG1445|consen  751 SREQ  754 (1012)
T ss_pred             CCCC
Confidence            5543

>KOG0270|consensus

Probab=99.62  E-value=4.7e-15  Score=107.95  Aligned_cols=146  Identities=14%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--Cceee------------------cccCCCCeEEEEECCCC-CEEEEEeCCCcEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNV------------------HKDMTSAVTSVDYSPTG-REFVAGGYDKSLRL   60 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------------------~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i   60 (197)
                      -|+++|.|+.|..|.|||+.-..  .|...                  ..+|...|.++.|+..- ..|++|+.|.+|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            37899999999999999975211  22222                  23577788899998754 57889999999999


Q ss_pred             EECCCCcccceeecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCc---eeeeeccccccccccccccceecccC
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASE---KLGYVNNKQRQALDYSESLKQKYAHH  136 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s  136 (197)
                      ||+.++.+...+ ..|...|.++.|+|. ..+|++|+.|+++.+.|.+...   ....+.+           .|..++|.
T Consensus       271 WD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g-----------~VEkv~w~  338 (463)
T KOG0270|consen  271 WDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG-----------EVEKVAWD  338 (463)
T ss_pred             EEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc-----------ceEEEEec
Confidence            999999988776 457789999999995 6788999999999999998422   1222222           25678888


Q ss_pred             ccc--ceeeeecCcceEEeecchhh
Q psy18074        137 PQI--RRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       137 ~~~--~~l~~~~~~~~~i~~~~~~~  159 (197)
                      |..  .++++..++.++-++++...
T Consensus       339 ~~se~~f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  339 PHSENSFFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             CCCceeEEEecCCceEEeeecCCCC
Confidence            743  34444455677888887764

>KOG2096|consensus

Probab=99.62  E-value=2.4e-14  Score=100.75  Aligned_cols=150  Identities=9%  Similarity=-0.001  Sum_probs=111.7

Q ss_pred             CCccEEEEEcCCCcEEEEEcc--CCC-----CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-------C
Q psy18074          1 MEAFVFTAANEDFNLYSYDIR--QLN-----SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-------G   66 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~--~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-------~   66 (197)
                      .+|.++++++....|++|.+-  ..+     ..+..+.+|...|..++|||+.+.+++.+.||.+++||+.-       .
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            479999999999999999863  112     23445789999999999999999999999999999999862       1


Q ss_pred             ccccee---ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         67 HSRDIY---HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        67 ~~~~~~---~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      ..+...   ...-.+....++++|+|+.|+.+. ...+.++..++|+....+...+.       ..|.+++|+++|++++
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~-------~~Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHS-------TTISSISYSSDGKYIA  389 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhc-------CceeeEEecCCCcEEe
Confidence            222221   111123455899999999887643 45699999888776655543333       3479999999999999


Q ss_pred             eecCcceEEeecchh
Q psy18074        144 RHRQVPRHIYNAQAE  158 (197)
Q Consensus       144 ~~~~~~~~i~~~~~~  158 (197)
                      ++.+..+.++.-...
T Consensus       390 tcGdr~vrv~~ntpg  404 (420)
T KOG2096|consen  390 TCGDRYVRVIRNTPG  404 (420)
T ss_pred             eecceeeeeecCCCc
Confidence            998887777664433

>KOG2394|consensus

Probab=99.61  E-value=8.7e-15  Score=109.09  Aligned_cols=125  Identities=18%  Similarity=0.297  Sum_probs=95.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC---------------------------CceeecccCCCCeEEEEECCCCCEEEEEeCC
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN---------------------------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYD   55 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~---------------------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d   55 (197)
                      ..+|+++-.+|.+++||.....                           .|+..+.-.++.|...+|+|||++|++.+.|
T Consensus       232 ~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  232 DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence            4567777788999999742100                           1222222234678899999999999999999


Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      |.++|||..+.+++..+.. --+...|++|+|||+||++|+.|.-|.||.+...+.+..-.+|.        ++|+.++|
T Consensus       312 GfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk--------SWVs~VaF  382 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK--------SWVSVVAF  382 (636)
T ss_pred             ceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc--------cceeeEee
Confidence            9999999998877666522 22578999999999999999999999999998877776655443        45677776


Q ss_pred             C
Q psy18074        136 H  136 (197)
Q Consensus       136 s  136 (197)
                      .
T Consensus       383 D  383 (636)
T KOG2394|consen  383 D  383 (636)
T ss_pred             c
Confidence            6

>KOG0647|consensus

Probab=99.61  E-value=3.1e-14  Score=99.34  Aligned_cols=178  Identities=10%  Similarity=0.071  Sum_probs=123.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCcccceeecc----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG--REFVAGGYDKSLRLYLAHQGHSRDIYHTK----   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----   75 (197)
                      ||..+++|+.|+.+++||+.+ + .+..+..|.++|..+.|-+..  ..|+||+-|.+|++||++....+..+..+    
T Consensus        83 dgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY  160 (347)
T KOG0647|consen   83 DGSKVFSGGCDKQAKLWDLAS-G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY  160 (347)
T ss_pred             CCceEEeeccCCceEEEEccC-C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceee
Confidence            688899999999999999996 3 466777899999999997654  48999999999999999964433222110    


Q ss_pred             ------------------------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eeecc
Q psy18074         76 ------------------------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL--GYVNN  117 (197)
Q Consensus        76 ------------------------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~  117 (197)
                                                          -.-.+.||+..++....+.|+-+|.+.+..+..+.+.  .++..
T Consensus       161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC  240 (347)
T KOG0647|consen  161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC  240 (347)
T ss_pred             ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence                                                1235788888888888899999999999988875333  23444


Q ss_pred             cccccc-ccccccceecccCccc-ceeeeecCcceEEeecchhhHHHHhHhHhhhhhhhcCCCCCC
Q psy18074        118 KQRQAL-DYSESLKQKYAHHPQI-RRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       118 ~~~~~~-~~~~~~v~~~~~s~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      |..... ...-..|++++|+|.- .++..|+|+...+|+.....+....+.....+..=.++..+.
T Consensus       241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence            433211 1112358899999954 444578888999999765555444344444444334444433

>KOG1273|consensus

Probab=99.61  E-value=1.1e-14  Score=102.33  Aligned_cols=101  Identities=14%  Similarity=0.258  Sum_probs=83.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        37 v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                      ..++.|++.|.+|+.|..||.|.|||+.+-..-..+ ..|..+|++++||++|+.|++++.|..|.+||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            789999999999999999999999999987654444 7788999999999999999999999999999999999887765


Q ss_pred             cccccccccccccceecccCc--ccceeeeecC
Q psy18074        117 NKQRQALDYSESLKQKYAHHP--QIRRIARHRQ  147 (197)
Q Consensus       117 ~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~  147 (197)
                      ...+         |....|+|  +.+.+++-..
T Consensus       105 f~sp---------v~~~q~hp~k~n~~va~~~~  128 (405)
T KOG1273|consen  105 FDSP---------VWGAQWHPRKRNKCVATIME  128 (405)
T ss_pred             ccCc---------cceeeeccccCCeEEEEEec
Confidence            4433         67777777  3344444333

>KOG4378|consensus

Probab=99.61  E-value=9.5e-15  Score=108.14  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=118.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..++++|+..+.|.|||++. ....+.+.+|+..|+++.++....+|++++..|.|.+..+.++.....+..+....|.-
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             ceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            35789999999999999995 56677889999999999999999999999999999999999887666664443466789


Q ss_pred             EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee--eecCcceEEeecchhh
Q psy18074         83 TVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA--RHRQVPRHIYNAQAEH  159 (197)
Q Consensus        83 v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~~~~i~~~~~~~  159 (197)
                      +.|+|..+.++ +++++|.|.+||+....++..+...+.       .+...+||+|....|.  .|.+..+.+|+.+..+
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc-------CCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            99999887765 889999999999987666655443332       3457899999665444  4556678999987443

>KOG2055|consensus

Probab=99.61  E-value=7.5e-15  Score=107.49  Aligned_cols=136  Identities=13%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++++|+..+..|-|++....+ +..+..+.- .+.|..++|+.++..|+.++.+|.|++||++...++..+.....-.-+
T Consensus       314 d~~fia~~G~~G~I~lLhakT-~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt  391 (514)
T KOG2055|consen  314 DSNFIAIAGNNGHIHLLHAKT-KELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT  391 (514)
T ss_pred             CCCeEEEcccCceEEeehhhh-hhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence            678999999999999998876 566666643 789999999999999999999999999999999887777443223346


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCC------ceeeeeccccccccccccccceecccCcccceeeeecC
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHAS------EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      ++|.+++++|||+|+..|.|.|||..+.      +++..+..-        ...|++++|++|++.||.++.
T Consensus       392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--------tt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--------TTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--------heeeeeeeeCcchhhhhhhhh
Confidence            7788899999999999999999997542      222222111        224789999999999996554

>KOG0307|consensus

Probab=99.60  E-value=2.1e-15  Score=120.53  Aligned_cols=149  Identities=13%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             EEEEEcCCCcEEEEEccCC--C---CceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee-ecccc
Q psy18074          5 VFTAANEDFNLYSYDIRQL--N---SPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY-HTKRM   77 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~--~---~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~   77 (197)
                      +|+.|..||.|.+||....  +   ..+.....|.+.|..+.|++.+. .|++|+.||.|.|||+..-+..... .....
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence            6899999999999998642  1   34556778999999999999654 9999999999999999875433332 12234


Q ss_pred             cceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceee--eecCc--ceE
Q psy18074         78 QHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIA--RHRQV--PRH  151 (197)
Q Consensus        78 ~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~--~~~~~--~~~  151 (197)
                      +.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+....      .+..++|+|++ ..|+  +..+.  .+.
T Consensus       162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~------~~S~l~WhP~~aTql~~As~dd~~Pviq  235 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM------HCSVLAWHPDHATQLLVASGDDSAPVIQ  235 (1049)
T ss_pred             ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc------ceeeeeeCCCCceeeeeecCCCCCceeE
Confidence            78999999986 4557789999999999999887776665554421      25789999976 2333  33333  459


Q ss_pred             Eeecchhh
Q psy18074        152 IYNAQAEH  159 (197)
Q Consensus       152 i~~~~~~~  159 (197)
                      +|+++.-.
T Consensus       236 lWDlR~as  243 (1049)
T KOG0307|consen  236 LWDLRFAS  243 (1049)
T ss_pred             eecccccC
Confidence            99976443

>KOG1007|consensus

Probab=99.60  E-value=3.7e-14  Score=98.56  Aligned_cols=153  Identities=13%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ||+.+++.+ |+++..||+++..+....-.+|...|..+.|+|+.+ .|++++.||.|++||.+..+....-..+|.-.|
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence            567777764 789999999975544444467888899999999866 568899999999999997665444447788899


Q ss_pred             eEEEEccC-CCEEEEEeCCCcEEEEEcCCCce---------------------eeeeccccccccccccccceecccCc-
Q psy18074         81 THTVWSLD-NKFVISASDEMNLRVWKAHASEK---------------------LGYVNNKQRQALDYSESLKQKYAHHP-  137 (197)
Q Consensus        81 ~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~~~s~-  137 (197)
                      .++.|+|. .+++++++.|..|.+|...+-..                     ...+....-..+.-+++.|++++||. 
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA  341 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence            99999996 56778999999999997642110                     00011111123344567789999987 


Q ss_pred             ccceeeee-cCcceEEeec
Q psy18074        138 QIRRIARH-RQVPRHIYNA  155 (197)
Q Consensus       138 ~~~~l~~~-~~~~~~i~~~  155 (197)
                      |--.+|+- .++.+.|-+.
T Consensus       342 dPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  342 DPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             CCeeEEEeccCceEEeecC
Confidence            44444543 3445555443

>KOG0321|consensus

Probab=99.58  E-value=3.3e-14  Score=107.84  Aligned_cols=157  Identities=14%  Similarity=0.152  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceee--cccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc--cc--------
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNV--HKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHS--RD--------   70 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~--~~--------   70 (197)
                      ..|++++.|.++++||+.. ......  +.+|.+.|.+++|.|.. ..|++|+.||.+.|||++-...  ..        
T Consensus       113 ~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~  191 (720)
T KOG0321|consen  113 SLLVSASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG  191 (720)
T ss_pred             eeEEEccCCceeeeeeecc-ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence            4688999999999999986 444443  78999999999999965 5788999999999999973220  00        


Q ss_pred             ----------ee------ecccccceeE---EEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccc---c
Q psy18074         71 ----------IY------HTKRMQHVTH---TVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYS---E  127 (197)
Q Consensus        71 ----------~~------~~~~~~~v~~---v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~  127 (197)
                                ..      ...+...+.+   +.+..|...||+++. |+.|+|||++..............-+.++   .
T Consensus       192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs  271 (720)
T KOG0321|consen  192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS  271 (720)
T ss_pred             cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence                      00      0012233333   445578888998777 99999999997655443332222222222   1


Q ss_pred             ccceecccCccccee-eeecCcceEEeecchhhHH
Q psy18074        128 SLKQKYAHHPQIRRI-ARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus       128 ~~v~~~~~s~~~~~l-~~~~~~~~~i~~~~~~~~~  161 (197)
                      -.+.+|.....|.++ |.+.|+.++.|++......
T Consensus       272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            235677777766655 5777889999999866543

>KOG0322|consensus

Probab=99.57  E-value=2.8e-14  Score=97.94  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=110.6

Q ss_pred             cEEEEEcCCCcEEEEEccCCC---------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ccc-ce
Q psy18074          4 FVFTAANEDFNLYSYDIRQLN---------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG--HSR-DI   71 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~--~~~-~~   71 (197)
                      .++++|-.+|.+.+||+....         ........|..+|.++.+.+.-..=++|+.+..+..|.+...  .+. ..
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            357788899999999998621         222334568899999999876555677888888888988643  321 11


Q ss_pred             eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-Ccce
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPR  150 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~  150 (197)
                      ...-....|..+..-||++.+|+++.|+.|+||+.++.+++..+..|...        |.+++|+|+...+|.++ +..+
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag--------vn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG--------VNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc--------eeEEEeCCCCchhhhccCCceE
Confidence            11222357889999999999999999999999999999999887776654        78999999988888666 4588


Q ss_pred             EEeec
Q psy18074        151 HIYNA  155 (197)
Q Consensus       151 ~i~~~  155 (197)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99985

>KOG0307|consensus

Probab=99.57  E-value=1e-14  Score=116.63  Aligned_cols=150  Identities=13%  Similarity=0.221  Sum_probs=108.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceee-cccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNV-HKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      +++++|+|+.||.|.|||+.+...+... -....+.|.+++|+-.- ..|++++.+|...|||++..+.+..+ ......
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence            5789999999999999999875544433 22345789999998754 46778899999999999987654444 222234


Q ss_pred             ceeEEEEccCCC-EEEEEeCC-C--cEEEEEcCCC-ceeeeeccccccccccccccceecccCccc-ceee-eecCcceE
Q psy18074         79 HVTHTVWSLDNK-FVISASDE-M--NLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIA-RHRQVPRH  151 (197)
Q Consensus        79 ~v~~v~~~~~~~-~l~~~~~d-g--~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~-~~~~~~~~  151 (197)
                      .+..++|+|+.. .+++++.| +  .|.+||++.. .++..+.+|...        |.++.|++.+ .+++ ++.|..+.
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--------ilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--------ILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc--------eeeeccCCCCchhhhcccCCCCee
Confidence            588999999864 34555443 3  5999999854 345556677766        5699999855 6665 55567899


Q ss_pred             Eeecchhh
Q psy18074        152 IYNAQAEH  159 (197)
Q Consensus       152 i~~~~~~~  159 (197)
                      +|+....+
T Consensus       280 ~wN~~tgE  287 (1049)
T KOG0307|consen  280 CWNPNTGE  287 (1049)
T ss_pred             EecCCCce
Confidence            99987643

>KOG1034|consensus

Probab=99.57  E-value=2.7e-13  Score=95.72  Aligned_cols=149  Identities=16%  Similarity=0.208  Sum_probs=114.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--Cceeec--ccCCCCeEEEEECCC----CCEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNVH--KDMTSAVTSVDYSPT----GREFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--~~~~~~v~~~~~sp~----~~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      +..++++++. ..+.+|.....+  ..++.+  ..|+.....++|+-+    ..+++.++.-|.|++.|+.++.+...+ 
T Consensus        54 e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-  131 (385)
T KOG1034|consen   54 EPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-  131 (385)
T ss_pred             CCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-
Confidence            4556777765 468888876322  223333  235667777888653    347888999999999999998877665 


Q ss_pred             cccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceE
Q psy18074         74 TKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRH  151 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~  151 (197)
                      .+|...|+.+.++|+ .+++++++.|..|++|++++..++..+-+-..     |-+.|-++.|+++|.+|++ |.+..+.
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-----HrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-----HRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc-----ccCcEEEEEEcCCCCeeeccCCcceEE
Confidence            678899999999996 47888999999999999999999988855332     3345789999999999995 4566999


Q ss_pred             Eeecch
Q psy18074        152 IYNAQA  157 (197)
Q Consensus       152 i~~~~~  157 (197)
                      +|.+..
T Consensus       207 ~W~l~~  212 (385)
T KOG1034|consen  207 LWRLNV  212 (385)
T ss_pred             EEecCh
Confidence            999873

>KOG1188|consensus

Probab=99.57  E-value=7.3e-14  Score=98.92  Aligned_cols=147  Identities=10%  Similarity=0.164  Sum_probs=110.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccceee-cccc-cc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYH-TKRM-QH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~-~~   79 (197)
                      ..+|++..+|.|++||..+ ++.+..+.++...+..+.|..  ....+.+++.||.|++||++.......+. ..+. .+
T Consensus        41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            4688888999999999988 677889999999999999966  45678899999999999999866554442 3332 24


Q ss_pred             eeEEEEccCCCEEEEEe----CCCcEEEEEcCCCce-eeeeccccccccccccccceecccCc-ccceeeeecC-cceEE
Q psy18074         80 VTHTVWSLDNKFVISAS----DEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQ-VPRHI  152 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~~~i  152 (197)
                      -.+++.+-.++.+++|.    .+-.+.+||++..+. +..+..       .|.+.|++++|+| +-++|++|+- +-+.+
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEe
Confidence            45666665778888874    367799999997655 433322       2334589999999 5677887774 57799


Q ss_pred             eecchh
Q psy18074        153 YNAQAE  158 (197)
Q Consensus       153 ~~~~~~  158 (197)
                      |+...+
T Consensus       193 fD~~~d  198 (376)
T KOG1188|consen  193 FDTKKD  198 (376)
T ss_pred             eecCCC
Confidence            998766

>KOG2106|consensus

Probab=99.56  E-value=1.8e-13  Score=101.54  Aligned_cols=142  Identities=10%  Similarity=0.091  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +..++++++.|+.+++|+ .  .++.... ....++.++.|+|.| .++.|+..|...+.|.++..++..- .. ..+++
T Consensus       379 s~~q~~T~gqdk~v~lW~-~--~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls  451 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWN-D--HKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLS  451 (626)
T ss_pred             ChhheeeccCcceEEEcc-C--CceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec-CCceE
Confidence            346789999999999999 3  3433332 235788999999999 9999999999999999985554433 33 58899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~  156 (197)
                      +++|+|+|.+||.|+.|+.|++|.+..........+....      ++++.+.||+|++++.+.+.+ .+..|+..
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG------SPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC------ceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            9999999999999999999999998765444433322221      447999999999999987766 67777443

>KOG2919|consensus

Probab=99.56  E-value=6.1e-14  Score=98.88  Aligned_cols=141  Identities=11%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCcccceeeccccc-
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHSRDIYHTKRMQ-   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~-   78 (197)
                      ++...++.|+....+-||.-.. ..++..+.+|.+.|+.+.|.++|+.|++|+. +-.|-.||++...........|.. 
T Consensus       218 ~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~  296 (406)
T KOG2919|consen  218 MDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD  296 (406)
T ss_pred             CCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC
Confidence            3567889999888888888766 5888899999999999999999999999874 678999999975432222233322 


Q ss_pred             ceeE--EEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         79 HVTH--TVWSLDNKFVISASDEMNLRVWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        79 ~v~~--v~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      .-..  ....|++++|++|+.||.|++||+.. +..+..+..+        .++++.++++|--.++|+++...+
T Consensus       297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--------sd~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--------SDTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--------cccccceecCcccceeeeccCcee
Confidence            2223  34578999999999999999999987 5544444333        345789999999888888776533

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.56  E-value=8.6e-13  Score=96.15  Aligned_cols=145  Identities=10%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             CccEE-EEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVF-TAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++..+ ++++.++.|++||..+ ++....+..+. .+..++|+|++..++++ +.++.+++||+.++..+..+..+  ..
T Consensus        41 dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~  116 (300)
T TIGR03866        41 DGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VE  116 (300)
T ss_pred             CCCEEEEEECCCCeEEEEECCC-CcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CC
Confidence            45544 6777889999999986 45555554433 35678999999977654 56899999999987765554222  35


Q ss_pred             eeEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eec-CcceEEeecc
Q psy18074         80 VTHTVWSLDNKFVISASDEM-NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHR-QVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~~~~~i~~~~  156 (197)
                      +.+++|+|+|++++++..++ .+.+||..+++..........         +..++|+|++++++ ++. +..+.+|+..
T Consensus       117 ~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---------PRFAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---------ccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence            68899999999999887765 567789887766544322221         35788999999885 433 5678999987


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ..+
T Consensus       188 ~~~  190 (300)
T TIGR03866       188 TRK  190 (300)
T ss_pred             cce
Confidence            654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048|consensus

Probab=99.54  E-value=7.2e-13  Score=101.21  Aligned_cols=152  Identities=11%  Similarity=0.058  Sum_probs=117.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC-CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM-TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .+.+|++-.||.|.+|++...--....+.++ .+.|.+++|++ +..|++.+.+|.|.-||+.+++..... ....+.++
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IW  114 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIW  114 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCccee
Confidence            4568999999999999998633334445554 46799999994 677889999999999999998876665 23347899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcc-eEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP-RHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~i~~~~~~~~  160 (197)
                      +++.+|.+..++.|++||.+..++...+.......      +....+.+-+++|+|++..|++|+.+. +.+|++...+.
T Consensus       115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS------LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             EEEeCCccceEEeecCCceEEEEecCCceEEEEee------cccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence            99999999999999999988787777666544321      112234578999999999999888765 89999987766


Q ss_pred             HH
Q psy18074        161 AI  162 (197)
Q Consensus       161 ~~  162 (197)
                      ..
T Consensus       189 ~~  190 (691)
T KOG2048|consen  189 LH  190 (691)
T ss_pred             EE
Confidence            54

>KOG2919|consensus

Probab=99.54  E-value=3.2e-13  Score=95.32  Aligned_cols=153  Identities=12%  Similarity=0.216  Sum_probs=116.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc--cCCC---CeEEEEECCCCCEEEEEeCCCcEEEEEC-CCCccccee---
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK--DMTS---AVTSVDYSPTGREFVAGGYDKSLRLYLA-HQGHSRDIY---   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~~sp~~~~l~~~~~d~~v~i~d~-~~~~~~~~~---   72 (197)
                      +.+++++.+.+.-|++||.-+ ++....+.  .|..   ...+++|+|||.+|++| ...+|++||+ +.|+-....   
T Consensus       122 ~t~l~a~ssr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             ccceeeeccccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            568899999999999999876 44333332  2332   35689999999999865 5788999999 666543322   


Q ss_pred             ---ecccccceeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074         73 ---HTKRMQHVTHTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus        73 ---~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                         ..+..+-+.+++|+|-. ..++.++....+-|+.-..+.++..+.++...        |+.++|.++|+.+.+|...
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG--------vThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG--------VTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC--------eeeEEeccCcCeecccccC
Confidence               11224678999999965 47889999888889988888888877777665        7999999999999987743


Q ss_pred             --ceEEeecchhhHHHHh
Q psy18074        149 --PRHIYNAQAEHRAIRS  164 (197)
Q Consensus       149 --~~~i~~~~~~~~~~~~  164 (197)
                        .+..|+++..+...-.
T Consensus       272 ~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             CCeEEEEeehhccchhhh
Confidence              6788999877665433

>KOG1063|consensus

Probab=99.54  E-value=1.4e-13  Score=105.44  Aligned_cols=151  Identities=15%  Similarity=0.216  Sum_probs=111.1

Q ss_pred             CccEEEEEcCCC-----cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce---ee
Q psy18074          2 EAFVFTAANEDF-----NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI---YH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~   73 (197)
                      +++++|+++...     .|++|+..+ -..+..+..|.-.|+.++|||||++|++.+.|+++.+|..........   ..
T Consensus       536 ~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~  614 (764)
T KOG1063|consen  536 TGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL  614 (764)
T ss_pred             CCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc
Confidence            588999987654     478999876 345667899999999999999999999999999999999864432111   14


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccccccccccccccceecccCc-c----cceeeeec
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS--EKLGYVNNKQRQALDYSESLKQKYAHHP-Q----IRRIARHR  146 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~----~~~l~~~~  146 (197)
                      ..|..-|...+|+|++.+++|++.|..|.+|.....  +.+..+..      ......|+.+++.| +    +..++.|-
T Consensus       615 k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~------~~~~~aVTAv~~~~~~~~e~~~~vavGl  688 (764)
T KOG1063|consen  615 KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC------LKFSLAVTAVAYLPVDHNEKGDVVAVGL  688 (764)
T ss_pred             cccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch------hccCCceeeEEeeccccccccceEEEEe
Confidence            568889999999999999999999999999998876  33332211      11123466777765 2    23667666


Q ss_pred             Cc-ceEEeecchhh
Q psy18074        147 QV-PRHIYNAQAEH  159 (197)
Q Consensus       147 ~~-~~~i~~~~~~~  159 (197)
                      .. .+.+|.....+
T Consensus       689 e~GeI~l~~~~~~~  702 (764)
T KOG1063|consen  689 EKGEIVLWRRKREH  702 (764)
T ss_pred             cccEEEEEeccccc
Confidence            54 67888755333

>KOG4378|consensus

Probab=99.53  E-value=3.9e-13  Score=99.74  Aligned_cols=148  Identities=7%  Similarity=0.048  Sum_probs=116.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC-CCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM-TSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ..+||+++..|.|.+..+.+ +.....|... ...|.-+.|+|..+ +|.+++.+|.|.+||+........+...|..+.
T Consensus       133 DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~  211 (673)
T KOG4378|consen  133 DEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC  211 (673)
T ss_pred             cceeEEeccCCcEEEEeccc-CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc
Confidence            56899999999999999886 3444445332 34567999999766 456789999999999997776666667788999


Q ss_pred             eEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         81 THTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      ..+||+|.. .+|++.+.|..|.+||.+.......+....+         ...++|+++|.+|+.|.. +.++.|+++..
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P---------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP---------LSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeecccccccceeeecCC---------cceeeecCCceEEEeecCCceEEEEecccC
Confidence            999999965 5567899999999999997776666665544         489999999999997765 47788998765


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      +.
T Consensus       283 k~  284 (673)
T KOG4378|consen  283 KA  284 (673)
T ss_pred             CC
Confidence            44

>KOG1007|consensus

Probab=99.53  E-value=1.2e-13  Score=96.05  Aligned_cols=144  Identities=13%  Similarity=0.225  Sum_probs=103.8

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecc-----cCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHK-----DMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +++- .|..|.+|++......+..+.     .+....++-+|+|  +|+.+++.+ |+++..||+++......+...|..
T Consensus       138 lasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  138 LASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcc
Confidence            3443 378899999986433233321     2455678889999  677777654 899999999987776666677878


Q ss_pred             ceeEEEEccCCCE-EEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcc-cceeee-ecCcceEEee
Q psy18074         79 HVTHTVWSLDNKF-VISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQ-IRRIAR-HRQVPRHIYN  154 (197)
Q Consensus        79 ~v~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~-~~~~~~~i~~  154 (197)
                      .|..+.|+|+-++ |+++++||.|++||.+..+ ++..+.+|.        .+|.++.|+|. .++|.+ +++..+.++.
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs--------HWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS--------HWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc--------eEEEEEEecCccceEEEecCCCceeEEEe
Confidence            8999999998665 6799999999999998543 444444443        46899999994 344444 4555778887


Q ss_pred             cchhh
Q psy18074        155 AQAEH  159 (197)
Q Consensus       155 ~~~~~  159 (197)
                      +....
T Consensus       288 a~svS  292 (370)
T KOG1007|consen  288 ASSVS  292 (370)
T ss_pred             ccccc
Confidence            76543

>KOG0321|consensus

Probab=99.52  E-value=8.7e-14  Score=105.63  Aligned_cols=161  Identities=12%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC-----CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce-eeccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN-----SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI-YHTKR   76 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~   76 (197)
                      -.+|+.+..||.|.+||.+...     ..+.....|...|..+.|-|-...|++++.|.++++||+..+++... ...+|
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence            4689999999999999986421     12345568999999999999667889999999999999999887654 34789


Q ss_pred             ccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCce--e------------------eeeccccccccccc---ccccee
Q psy18074         77 MQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEK--L------------------GYVNNKQRQALDYS---ESLKQK  132 (197)
Q Consensus        77 ~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~--~------------------~~~~~~~~~~~~~~---~~~v~~  132 (197)
                      .+.|.++||+|... .+++|+.||.|.|||.+-...  +                  ..............   .+.|+.
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            99999999999754 567999999999999863220  0                  00000000000000   112444


Q ss_pred             cccCcccceee-eec-CcceEEeecchhhHHHHh
Q psy18074        133 YAHHPQIRRIA-RHR-QVPRHIYNAQAEHRAIRS  164 (197)
Q Consensus       133 ~~~s~~~~~l~-~~~-~~~~~i~~~~~~~~~~~~  164 (197)
                      +.| -|...|| ++. |..+.+||+++.....+.
T Consensus       224 v~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~  256 (720)
T KOG0321|consen  224 VLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQ  256 (720)
T ss_pred             EEE-eccceeeeccCCCcceEEEeeccccccccc
Confidence            444 4555565 444 568899999988776543

>KOG1272|consensus

Probab=99.52  E-value=7.6e-14  Score=102.51  Aligned_cols=141  Identities=10%  Similarity=0.096  Sum_probs=115.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      .+|++++..|.+..-|+.. ++.+..+....+.+..++-+|-...+-+|..+|+|.+|.....+.+..+ ..|.++|.++
T Consensus       222 fLL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi-LcH~g~V~si  299 (545)
T KOG1272|consen  222 FLLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI-LCHRGPVSSI  299 (545)
T ss_pred             heeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH-HhcCCCcceE
Confidence            4788899999999999987 6778888777889999999999999999999999999999988776665 4588999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      ++.++|+|++|.+.|..++|||++.-..+.++.....         ...+++|..| +||.+....+.||.-.
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~---------a~~ls~Sqkg-lLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP---------ASNLSLSQKG-LLALSYGDHVQIWKDA  362 (545)
T ss_pred             EECCCCcEEeecccccceeEeeeccccccceeecCCC---------cccccccccc-ceeeecCCeeeeehhh
Confidence            9999999999999999999999997665555544322         3677777654 5566666778888653

>KOG0642|consensus

Probab=99.52  E-value=2e-13  Score=102.25  Aligned_cols=108  Identities=18%  Similarity=0.219  Sum_probs=89.3

Q ss_pred             cEEEEEcCCCcEEEEEccCC-------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC------Cc---
Q psy18074          4 FVFTAANEDFNLYSYDIRQL-------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ------GH---   67 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~------~~---   67 (197)
                      ..|++++.||++.+|++.+.       -.++..+.+|.++|.|+++.+++..+++|+.||+|+.|++..      ..   
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~  386 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS  386 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence            46899999999999999321       157888999999999999999999999999999999996642      11   


Q ss_pred             ccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      .+.....+|.+.|+.+++|+....|++++.||++++|......+
T Consensus       387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            22223578999999999999888899999999999998764433

>KOG1539|consensus

Probab=99.52  E-value=6.2e-14  Score=109.21  Aligned_cols=100  Identities=17%  Similarity=0.298  Sum_probs=89.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      .+++.+..|-.|+++|..+ .+.++.+.+|...|++++|||||++|++++.|++|++||+.++.++..+...  .++.++
T Consensus       547 ~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--~~~~sl  623 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--SPCTSL  623 (910)
T ss_pred             hhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--Ccceee
Confidence            3567788899999999987 5788999999999999999999999999999999999999999998877444  688999


Q ss_pred             EEccCCCEEEEEeCC-CcEEEEEc
Q psy18074         84 VWSLDNKFVISASDE-MNLRVWKA  106 (197)
Q Consensus        84 ~~~~~~~~l~~~~~d-g~i~vwd~  106 (197)
                      .|+|+|.+||+...| .-|++|.-
T Consensus       624 s~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EECCCCCEEEEEEecCceEEEEEc
Confidence            999999999998877 66999964

>KOG4328|consensus

Probab=99.52  E-value=5e-13  Score=97.98  Aligned_cols=146  Identities=17%  Similarity=0.293  Sum_probs=106.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC----CCcccceee-
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH----QGHSRDIYH-   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~----~~~~~~~~~-   73 (197)
                      ...+||+++.|++++|||++...   .|......|...|.+..|||.+..|++.+.|..|+|||..    .-.....+. 
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H  413 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH  413 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence            56789999999999999998542   2344556899999999999998889999999999999984    222222221 


Q ss_pred             ---cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         74 ---TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        74 ---~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                         .+..-...-..|.|+..+++.|..-..|-|+|...++.+..+.......+      ..-..|+|-+..+++|+....
T Consensus       414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI------~~vn~~HP~~~~~~aG~~s~G  487 (498)
T KOG4328|consen  414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTI------PSVNEFHPMRDTLAAGGNSSG  487 (498)
T ss_pred             cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccc------ccceeecccccceeccCCccc
Confidence               11112345678999999999999999999999988886766544443211      134479998886666665555


Q ss_pred             EEe
Q psy18074        151 HIY  153 (197)
Q Consensus       151 ~i~  153 (197)
                      .||
T Consensus       488 ki~  490 (498)
T KOG4328|consen  488 KIY  490 (498)
T ss_pred             eEE
Confidence            555

>KOG0649|consensus

Probab=99.51  E-value=1.1e-12  Score=89.36  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--------   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------   73 (197)
                      ++.+|.+| .|+.++.||+.+ ++..+.+.+|..-+.++.-......+++|+.||++++||.++++++..+.        
T Consensus       126 enSi~~Ag-GD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l  203 (325)
T KOG0649|consen  126 ENSILFAG-GDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL  203 (325)
T ss_pred             CCcEEEec-CCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence            45566666 799999999998 68889999999999999987677789999999999999999988766541        


Q ss_pred             ccc-ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         74 TKR-MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        74 ~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      .+| ...|-+++  .+..++++|+ ...+.+|++++.++...+.-..
T Consensus       204 Rp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa  247 (325)
T KOG0649|consen  204 RPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA  247 (325)
T ss_pred             CcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEeccc
Confidence            111 12345554  4566887766 4568999999988887775443

>KOG2111|consensus

Probab=99.50  E-value=2.8e-12  Score=90.26  Aligned_cols=149  Identities=11%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC--CCCEEEE-EeCCCcEEEEECCCCcc-cceeecccccce
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP--TGREFVA-GGYDKSLRLYLAHQGHS-RDIYHTKRMQHV   80 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~~d~~v~i~d~~~~~~-~~~~~~~~~~~v   80 (197)
                      .+++. ..+.|++|...+.-+.++.+.....+=.-++..|  +...|+. |-.-|.|.+-|+..... .......|.+.|
T Consensus       106 riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I  184 (346)
T KOG2111|consen  106 RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI  184 (346)
T ss_pred             eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCce
Confidence            34444 3568999988743344555543332222334444  3445554 55679999999987655 233346788999


Q ss_pred             eEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMN-LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      .|++++.+|..+|+++..|+ |+|||..+|..+..+......      ..+.+++|||++.+||.+++ +.++|+.+...
T Consensus       185 acv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  185 ACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch------heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999987 889999999999887655443      34799999999999997765 58999998765


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      ..
T Consensus       259 ~~  260 (346)
T KOG2111|consen  259 EN  260 (346)
T ss_pred             CC
Confidence            43

>KOG1523|consensus

Probab=99.49  E-value=1.2e-12  Score=92.24  Aligned_cols=151  Identities=14%  Similarity=0.174  Sum_probs=114.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCccccee-eccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH-QGHSRDIY-HTKR   76 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~-~~~~~~~~-~~~~   76 (197)
                      .|...+|++..+..|.||......  .+..++..|...|++++|+|..+.|++++.|..-++|... .+.-...+ ...+
T Consensus        20 ~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi   99 (361)
T KOG1523|consen   20 SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI   99 (361)
T ss_pred             CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe
Confidence            367889999999999999987532  5677889999999999999999999999999999999984 44322222 2445


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeec
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNA  155 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~  155 (197)
                      ...++++.|+|.++.+++|+....|.||-+.+.+.=. ...+...   ...+.|.+++|+|++-.+|.|+. ..+.++.+
T Consensus       100 NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW-VsKhikk---PirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  100 NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW-VSKHIKK---PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             ccceeeEeecCcCceEEeccCccEEEEEEEeccccee-hhhhhCC---ccccceeeeeccCCcceecccccCcceeEEEE
Confidence            6789999999999999999999999999887544321 1111111   11245789999999999997774 46677654

>KOG2445|consensus

Probab=99.48  E-value=3.6e-12  Score=89.45  Aligned_cols=158  Identities=14%  Similarity=0.122  Sum_probs=108.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCc--c------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGH--S------   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~--~------   68 (197)
                      -|..+|+++.|+++.|||.++..   .+......|.+.|..+.|.+  -|+.+++++.|+++.||.-....  .      
T Consensus        24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv  103 (361)
T KOG2445|consen   24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV  103 (361)
T ss_pred             cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence            37889999999999999975422   34455678999999999955  48999999999999999863211  0      


Q ss_pred             cceeecccccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeecccc-cc----ccccccccceecccCc---c
Q psy18074         69 RDIYHTKRMQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLGYVNNKQ-RQ----ALDYSESLKQKYAHHP---Q  138 (197)
Q Consensus        69 ~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~----~~~~~~~~v~~~~~s~---~  138 (197)
                      .........+.|+.+.|.|.  |-.+++++.||.++||+....-.+....-.. -.    .+..+.....|+.|+|   .
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            01112234578999999995  6778999999999999876433332221110 00    1111223356888887   3


Q ss_pred             cceeeeecCc------ceEEeecchhh
Q psy18074        139 IRRIARHRQV------PRHIYNAQAEH  159 (197)
Q Consensus       139 ~~~l~~~~~~------~~~i~~~~~~~  159 (197)
                      -.+||.|.+.      .+.||......
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~  210 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENG  210 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCc
Confidence            4678887776      67888876554

>KOG1408|consensus

Probab=99.48  E-value=6.3e-13  Score=102.68  Aligned_cols=172  Identities=10%  Similarity=0.117  Sum_probs=132.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCcccceeecc--
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT---GREFVAGGYDKSLRLYLAHQGHSRDIYHTK--   75 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--   75 (197)
                      .||+.||+|..-|++++|++... .....+.+|+..|.|+.++.-   ..+|++++.|+-|.+||+.....+.....+  
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS  547 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS  547 (1080)
T ss_pred             CCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence            47999999999999999999874 556677899999999999752   457899999999999998743221111111  


Q ss_pred             -----------------------------------------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         76 -----------------------------------------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        76 -----------------------------------------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                                                                     ....++.++..|..+++++++.|.+|+|||+.+
T Consensus       548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s  627 (1080)
T KOG1408|consen  548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES  627 (1080)
T ss_pred             cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence                                                           124567788888888999999999999999999


Q ss_pred             CceeeeeccccccccccccccceecccCcccceeeee-cCcceEEeecchhhHHHHhHhHhhhhhhhcCCC
Q psy18074        109 SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSA  178 (197)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (197)
                      ++....+.+....     +...-.+...|.|.+||++ ++..+.+++....+.+..+--+.+-....|+..
T Consensus       628 gKq~k~FKgs~~~-----eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  628 GKQVKSFKGSRDH-----EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             cceeeeecccccC-----CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence            9999998876542     1223578889999999954 556899999988888777766655555555554

>KOG2394|consensus

Probab=99.48  E-value=4.4e-13  Score=100.17  Aligned_cols=150  Identities=14%  Similarity=0.096  Sum_probs=105.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecc-----cCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCC----------
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHK-----DMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQG----------   66 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~----------   66 (197)
                      +.-++.|-..|.|.+.|...  ..+..+.     .....++++.|-|.+ ..++.+-.+|.+++||..-.          
T Consensus       185 g~dllIGf~tGqvq~idp~~--~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPIN--FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CcceEEeeccCceEEecchh--hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            44566777788898888764  2222211     123689999999854 56667788999999976410          


Q ss_pred             ----ccccee-------------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccccccccccc
Q psy18074         67 ----HSRDIY-------------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESL  129 (197)
Q Consensus        67 ----~~~~~~-------------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  129 (197)
                          ......             .....+.|+..+|+|||++||+.+.||.++|||..+.+.+..+..-...        
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG--------  334 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG--------  334 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc--------
Confidence                000000             0112357889999999999999999999999999987776655544443        


Q ss_pred             ceecccCcccceeeeecCc-ceEEeecchhhHHH
Q psy18074        130 KQKYAHHPQIRRIARHRQV-PRHIYNAQAEHRAI  162 (197)
Q Consensus       130 v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~~  162 (197)
                      ..|++|||||++|++|..+ -+.||.....+.+.
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            3699999999999987755 67999887665443

>KOG1524|consensus

Probab=99.47  E-value=4.3e-13  Score=100.41  Aligned_cols=144  Identities=12%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---------Ccccc---
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ---------GHSRD---   70 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~---------~~~~~---   70 (197)
                      ...|+.++.||.+.+.+-.  ++..+.+..|.+.+.+-.|+|+|.-|++++.||.|++|.-..         ++.+.   
T Consensus        75 ~d~~~i~s~DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence            3467788889999988765  677778899999999999999999999999999999997651         00000   


Q ss_pred             ---------------------------eeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc--
Q psy18074         71 ---------------------------IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ--  121 (197)
Q Consensus        71 ---------------------------~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--  121 (197)
                                                 .-...|.+-|.++.|+|....+++|+.|-..++||.. |..+..-..++-.  
T Consensus       153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT  231 (737)
T KOG1524|consen  153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT  231 (737)
T ss_pred             ECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence                                       0023478889999999999999999999999999974 3333222211110  


Q ss_pred             ------------------cc-ccccccceecccCcccceeeeecCcc
Q psy18074        122 ------------------AL-DYSESLKQKYAHHPQIRRIARHRQVP  149 (197)
Q Consensus       122 ------------------~~-~~~~~~v~~~~~s~~~~~l~~~~~~~  149 (197)
                                        .+ ......|..++||+||..++++....
T Consensus       232 Sva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  232 SVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCc
Confidence                              00 11123577888999998888665543

>KOG2110|consensus

Probab=99.46  E-value=1.6e-12  Score=93.04  Aligned_cols=97  Identities=13%  Similarity=0.281  Sum_probs=84.5

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC-cEEEEECCCCcccceeeccc-ccceeEEEEccC
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK-SLRLYLAHQGHSRDIYHTKR-MQHVTHTVWSLD   88 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~   88 (197)
                      ..|.|.+||..+ -+++..+..|.+++.+++|+++|.+|||++..| .|++|.+.+|..+..+..+- ...|.+++|+|+
T Consensus       151 t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  151 TSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            458899999987 478889999999999999999999999999888 56799999998877764332 256899999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q psy18074         89 NKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        89 ~~~l~~~~~dg~i~vwd~~~  108 (197)
                      +++|++.+..++|++|.+..
T Consensus       230 s~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCeEEEecCCCeEEEEEecc
Confidence            99999999999999998864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=4.2e-12  Score=86.91  Aligned_cols=106  Identities=17%  Similarity=0.395  Sum_probs=79.6

Q ss_pred             CccEEEE--EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeeccc
Q psy18074          2 EAFVFTA--ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~   76 (197)
                      +|..|++  |..+..|.+||++  ..++..+.  ...+..+.|+|+|+++++++.   .|.|.+||.++...+...  .|
T Consensus        70 ~g~~favi~g~~~~~v~lyd~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~  143 (194)
T PF08662_consen   70 NGNEFAVIYGSMPAKVTLYDVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EH  143 (194)
T ss_pred             CCCEEEEEEccCCcccEEEcCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--cc
Confidence            4555443  5567789999997  45566553  467789999999999998764   467999999977766554  23


Q ss_pred             ccceeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q psy18074         77 MQHVTHTVWSLDNKFVISASD------EMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~  115 (197)
                       ..+..++|+|+|++++++..      |+.++||+.. |+.+...
T Consensus       144 -~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  144 -SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             -CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence             46789999999999997753      7889999984 6655443

>KOG2106|consensus

Probab=99.45  E-value=2.6e-12  Score=95.56  Aligned_cols=117  Identities=12%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy18074         31 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE  110 (197)
Q Consensus        31 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~  110 (197)
                      .+|....+.++.+|+...+++++.|+.+++|+  ..++.......  .++.|++|+|.| .++.|...|...+.|..+..
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec--CceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            45667889999999999999999999999999  44554444333  688999999999 99999999999999998855


Q ss_pred             eeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhhHH
Q psy18074        111 KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHRA  161 (197)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~~  161 (197)
                      .+..-.. .        .++++++|+|+|.+||.++++ .+.||......+.
T Consensus       440 lv~~~~d-~--------~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  440 LVTIHTD-N--------EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK  482 (626)
T ss_pred             eEEEEec-C--------CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence            4433222 2        236899999999999988876 6789888766543

>KOG3881|consensus

Probab=99.44  E-value=1.5e-12  Score=93.76  Aligned_cols=113  Identities=13%  Similarity=0.172  Sum_probs=101.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .+.||+++.-+.+++||.+...+|+..+.-.+.+++++...|+++.+++|..-+.+..||++.+........+-.+.+.+
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS  295 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence            46789999999999999998778999988788999999999999999999999999999999998877765667789999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      +..+|.++++++++.|..++|+|+.+.+.+...
T Consensus       296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             EEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence            999999999999999999999999986655433

>KOG1009|consensus

Probab=99.43  E-value=6e-13  Score=96.24  Aligned_cols=144  Identities=16%  Similarity=0.253  Sum_probs=106.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCC------C---------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL------N---------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~------~---------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~   66 (197)
                      +|.++|+|+.+|.|.+|-....      .         .....+.+|...+..++|+|++..+++++.|..+++||+..|
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc
Confidence            6889999999999999986510      0         123346678899999999999999999999999999999999


Q ss_pred             cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec--------cccc----cccccc---cccce
Q psy18074         67 HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN--------NKQR----QALDYS---ESLKQ  131 (197)
Q Consensus        67 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~----~~~~~~---~~~v~  131 (197)
                      .....+ ..|...|..++|.|-++++++-+.|...+.+.+...+.+....        ..+.    ..+..+   .+.-.
T Consensus       156 ~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  156 QLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             eeEeec-cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            887766 6688899999999999999988888877777665433332221        0000    001000   12345


Q ss_pred             ecccCcccceeeeec
Q psy18074        132 KYAHHPQIRRIARHR  146 (197)
Q Consensus       132 ~~~~s~~~~~l~~~~  146 (197)
                      .++|+|+|..+++..
T Consensus       235 RlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPA  249 (434)
T ss_pred             hcccCCCCcEEEccc
Confidence            678999999988543

>KOG2139|consensus

Probab=99.43  E-value=5e-12  Score=90.61  Aligned_cols=146  Identities=14%  Similarity=0.250  Sum_probs=100.1

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCC----cc--------cce
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQG----HS--------RDI   71 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~----~~--------~~~   71 (197)
                      .|+++..|..|++||-.. ..+...-...+..|++++|.|.+. .|+.|.. +.|.+|.....    +.        ...
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qv  189 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQV  189 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhh
Confidence            467888999999999875 333333334567899999999754 5555554 45999987531    11        111


Q ss_pred             e-ecccccceeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-Cc
Q psy18074         72 Y-HTKRMQHVTHTVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QV  148 (197)
Q Consensus        72 ~-~~~~~~~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~  148 (197)
                      + ..+| ..|++++|++||..+++++. +..|.+||+.++..+-......+.        ++-+.|||||.++.+.. +.
T Consensus       190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg--------~slLkwSPdgd~lfaAt~da  260 (445)
T KOG2139|consen  190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG--------FSLLKWSPDGDVLFAATCDA  260 (445)
T ss_pred             eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc--------eeeEEEcCCCCEEEEecccc
Confidence            2 2333 78999999999999997765 678999999998766544222222        46889999998876544 55


Q ss_pred             ceEEeecchhhHH
Q psy18074        149 PRHIYNAQAEHRA  161 (197)
Q Consensus       149 ~~~i~~~~~~~~~  161 (197)
                      ...+|...+....
T Consensus       261 vfrlw~e~q~wt~  273 (445)
T KOG2139|consen  261 VFRLWQENQSWTK  273 (445)
T ss_pred             eeeeehhccccee
Confidence            6788865544433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=7.1e-12  Score=96.13  Aligned_cols=132  Identities=13%  Similarity=0.142  Sum_probs=90.0

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCcccceeecccccceeEEEEccC
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD---KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD   88 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~   88 (197)
                      +..|++||...  .....+..+...+.++.|+|+|+.|+.++.+   ..|++||+.++........  .+....++|+||
T Consensus       183 ~~~i~i~d~dg--~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDG--FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCC--CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCC
Confidence            46799999874  3345566778889999999999999887643   4799999988764332211  123457899999


Q ss_pred             CCEEEEE-eCCCcEEEE--EcCCCceeeeeccccccccccccccceecccCcccceeeeec--CcceEEeecc
Q psy18074         89 NKFVISA-SDEMNLRVW--KAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus        89 ~~~l~~~-~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~~~i~~~~  156 (197)
                      |+.|+.+ +.+|.+.+|  |+.++.. ..+..+..        .+..+.|+|||+.|+..+  ++...||...
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~--------~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG--------NNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC--------CcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            9998865 467765555  6655543 33332221        246889999999887443  3466788764

>KOG2445|consensus

Probab=99.40  E-value=1.1e-11  Score=87.07  Aligned_cols=156  Identities=10%  Similarity=0.150  Sum_probs=106.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC-----Cceeecc-------cCCCCeEEEEECCC---CCEEEEEeCC-----CcEEEEE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN-----SPLNVHK-------DMTSAVTSVDYSPT---GREFVAGGYD-----KSLRLYL   62 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~-------~~~~~v~~~~~sp~---~~~l~~~~~d-----~~v~i~d   62 (197)
                      |..+|+++.||.++||+.....     .....+.       .+..+..|+.|+|.   ...|+.|+.+     +.++||.
T Consensus       126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye  205 (361)
T KOG2445|consen  126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE  205 (361)
T ss_pred             ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence            6678999999999999975321     1122222       35567899999984   3567777655     4788887


Q ss_pred             CCCCc--cccee-ecccccceeEEEEccC-C---CEEEEEeCCCcEEEEEcCCCc------------eeeeecccccccc
Q psy18074         63 AHQGH--SRDIY-HTKRMQHVTHTVWSLD-N---KFVISASDEMNLRVWKAHASE------------KLGYVNNKQRQAL  123 (197)
Q Consensus        63 ~~~~~--~~~~~-~~~~~~~v~~v~~~~~-~---~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~  123 (197)
                      ...+.  ..... ..+|..+|+.++|.|+ |   ..||+++.|| |+||.+....            .+..+.-..-..+
T Consensus       206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence            76543  22111 2478899999999996 3   3578999999 9999986311            1111222222334


Q ss_pred             ccccccceecccCcccceeee-ecCcceEEeecchhh
Q psy18074        124 DYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEH  159 (197)
Q Consensus       124 ~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~  159 (197)
                      ..|+..|..+.|+-.|..|++ |.++.+.+|++....
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            455667899999999999995 556688999986543

>KOG1523|consensus

Probab=99.40  E-value=6.1e-12  Score=88.73  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=113.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce---eeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI---YHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~~   76 (197)
                      ..+.|++++.|...++|.....+  .+.-.+..+...++++.|+|..+.|++|+....|.+|-.+.-.--.+   +...+
T Consensus        66 ~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi  145 (361)
T KOG1523|consen   66 KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI  145 (361)
T ss_pred             CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence            35678999999999999985433  55666778899999999999999999999999999988765332221   22345


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcC-----CCceeeee----c-cccccccccccccceecccCcccceeeeec
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAH-----ASEKLGYV----N-NKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~----~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      .+.|.+++|+|++-+++.|+.|+..+|+..-     ........    . +....-+.....++..+.|+|+|..|+...
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            6789999999999999999999999999642     11100000    0 000111123456789999999999999655


Q ss_pred             C-cceEEeecchh
Q psy18074        147 Q-VPRHIYNAQAE  158 (197)
Q Consensus       147 ~-~~~~i~~~~~~  158 (197)
                      + .++.+-+....
T Consensus       226 Hds~v~~~da~~p  238 (361)
T KOG1523|consen  226 HDSTVSFVDAAGP  238 (361)
T ss_pred             CCCceEEeecCCC
Confidence            4 47777666544

>KOG2111|consensus

Probab=99.40  E-value=1e-11  Score=87.49  Aligned_cols=100  Identities=10%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             EcCCCcEEEEEccCCCC-ceeecccCCCCeEEEEECCCCCEEEEEeCCCc-EEEEECCCCcccceeeccc-ccceeEEEE
Q psy18074          9 ANEDFNLYSYDIRQLNS-PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKS-LRLYLAHQGHSRDIYHTKR-MQHVTHTVW   85 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~-~~~v~~v~~   85 (197)
                      |-.-|.|.+-|+..... +...+.+|.+.|.|++++-+|+.+|+++..|+ |+|||..+|..+..+..+- ...+.+++|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            56668999999874222 34678899999999999999999999999885 6799999999887774432 367999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         86 SLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        86 ~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      ||++.+|+++++.|+++++.++.
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999998874

>KOG1517|consensus

Probab=99.39  E-value=8.1e-12  Score=100.20  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCC--CCceeecccCCCC--eEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee-ecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL--NSPLNVHKDMTSA--VTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY-HTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~--v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~-~~~   75 (197)
                      .|+++++|..||.|++||.+..  ...+.....|...  |..+.+.++|- .|++|+.+|.|++||++.......+ ...
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            4789999999999999998743  2467777888877  99999988765 5999999999999999975322222 111


Q ss_pred             cc---cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceE
Q psy18074         76 RM---QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRH  151 (197)
Q Consensus        76 ~~---~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~  151 (197)
                      |.   +..+++..+++...+|+|+. +.|.||++. |+.+..+.... ..+...-..+.|++|||---.+|+|.++ .+.
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~-~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP-GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCc-ccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence            21   34899999999999999998 999999986 44444443221 1222223346899999998888877765 778


Q ss_pred             Eeecchh
Q psy18074        152 IYNAQAE  158 (197)
Q Consensus       152 i~~~~~~  158 (197)
                      ||.-.+.
T Consensus      1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred             EeecCCc
Confidence            8876543

>KOG2139|consensus

Probab=99.39  E-value=3.6e-11  Score=86.32  Aligned_cols=142  Identities=15%  Similarity=0.182  Sum_probs=98.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC---Cc--------eee--cccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN---SP--------LNV--HKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHS   68 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~---~~--------~~~--~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~   68 (197)
                      +.-|+.|+..| |.+|......   ..        .+.  ..+| .+|+++.|++||..+++++ .+..+.|||..++..
T Consensus       153 aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  153 ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence            45678887655 8899864211   11        111  2232 5799999999999999877 467899999999887


Q ss_pred             cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecC
Q psy18074         69 RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus        69 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      ...... ..+.+.-+.|||||.+++.++-|+..++|...+.- ...-..+..         .|..-+|+|+|++|.-...
T Consensus       231 ~pL~~~-glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg---------rvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  231 IPLIPK-GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG---------RVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             cccccc-CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC---------ceeeeeecCCCCEEEEEEc
Confidence            665522 23778899999999999999999999999654322 111111111         2678899999998875444


Q ss_pred             cceEEeecc
Q psy18074        148 VPRHIYNAQ  156 (197)
Q Consensus       148 ~~~~i~~~~  156 (197)
                      ..-.+|...
T Consensus       301 gsp~lysl~  309 (445)
T KOG2139|consen  301 GSPRLYSLT  309 (445)
T ss_pred             CCceEEEEe
Confidence            444555554

>KOG0650|consensus

Probab=99.39  E-value=1.3e-11  Score=93.65  Aligned_cols=164  Identities=11%  Similarity=0.137  Sum_probs=112.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccc-----------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSR-----------   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~-----------   69 (197)
                      -|..|++|+.||+|++|.+.+ +.++..+. ..+.|.+++|+|.+. .++.+.....+.+.+..-|..+           
T Consensus       411 ~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~  488 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS  488 (733)
T ss_pred             CcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence            478999999999999999998 68887774 477999999999765 2333333444555544322000           


Q ss_pred             -------------------------ceeecccccceeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeecccccc
Q psy18074         70 -------------------------DIYHTKRMQHVTHTVWSLDNKFVISASD---EMNLRVWKAHASEKLGYVNNKQRQ  121 (197)
Q Consensus        70 -------------------------~~~~~~~~~~v~~v~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~  121 (197)
                                               ......|...|..+.|+..|.||++..-   ...|.|+++........+....+ 
T Consensus       489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG-  567 (733)
T KOG0650|consen  489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-  567 (733)
T ss_pred             CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCC-
Confidence                                     0011235678999999999999997654   34588888876655544433332 


Q ss_pred             ccccccccceecccCcccceeeeecCcceEEeecchhhHHHHhHhHhhhhhhhc
Q psy18074        122 ALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRT  175 (197)
Q Consensus       122 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (197)
                             .+..+.|+|..-++..+....+.||++.+...........+-...+.
T Consensus       568 -------~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  568 -------LVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             -------ceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence                   26789999998888888888999999988655554444444443333

>KOG1310|consensus

Probab=99.37  E-value=4e-12  Score=95.61  Aligned_cols=153  Identities=15%  Similarity=0.191  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec-ccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCC---------ccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH-KDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQG---------HSR   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~---------~~~   69 (197)
                      ||.+|++|+.|-.+.+||.-. .+++..+ .+|...|.+++|-|.  ...+++|..|..|++||+...         ...
T Consensus        61 dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~  139 (758)
T KOG1310|consen   61 DGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET  139 (758)
T ss_pred             CCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence            799999999999999999874 3444444 689999999999994  567889999999999999841         111


Q ss_pred             ceeecccccceeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccc--cceecccCc-ccceeeee
Q psy18074         70 DIYHTKRMQHVTHTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSES--LKQKYAHHP-QIRRIARH  145 (197)
Q Consensus        70 ~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~-~~~~l~~~  145 (197)
                      ......|...|..++-.|++ ..+.+++.||+|+.+|++....-..-.........++..  ...++..+| +-.++|.|
T Consensus       140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence            12235677889999999998 667799999999999998422111001011111122211  246788888 45677777


Q ss_pred             cCcce-EEeec
Q psy18074        146 RQVPR-HIYNA  155 (197)
Q Consensus       146 ~~~~~-~i~~~  155 (197)
                      ..++. .+|+.
T Consensus       220 gsdpfarLYD~  230 (758)
T KOG1310|consen  220 GSDPFARLYDR  230 (758)
T ss_pred             CCCchhhhhhh
Confidence            66654 77875

>KOG1063|consensus

Probab=99.37  E-value=6.3e-12  Score=96.54  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             eecccCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEE
Q psy18074         28 NVHKDMTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLR  102 (197)
Q Consensus        28 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  102 (197)
                      ..+.+|.-.|.+++.+|+++.+++++..     ..|++|+..+......+ .+|.-.|+.++|||||++|++.+.|.++.
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-cccceEEEEEEECCCCcEEEEeecCceEE
Confidence            3466888899999999999999997643     47999999877665544 67889999999999999999999999999


Q ss_pred             EEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074        103 VWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus       103 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      +|......... +.   -..+..|.-.|....|+|++.++++++.+ .+.+|.....
T Consensus       598 l~~~~~~~~~e-~~---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  598 LYEVQEDIKDE-FR---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eeeeecccchh-hh---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99874322111 11   01122223347899999999999977755 8899998776

>KOG0290|consensus

Probab=99.37  E-value=3.2e-11  Score=84.28  Aligned_cols=174  Identities=15%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             EEEEEcCCCcEEEEEccCCCC---ceeec-----ccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcc--cceee
Q psy18074          5 VFTAANEDFNLYSYDIRQLNS---PLNVH-----KDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHS--RDIYH   73 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~---~~~~~-----~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~   73 (197)
                      +||+.  +..+++|.+.....   +...+     ..+..++++..|+. +.+++.+++-|-+..+||+.++..  +.+-.
T Consensus       115 lLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            44544  34799999863211   11112     23456899999987 567888999999999999998733  34444


Q ss_pred             cccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCce-------------eeeec-----------------------
Q psy18074         74 TKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEK-------------LGYVN-----------------------  116 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-------------~~~~~-----------------------  116 (197)
                      ..|...|..++|...+. .+++.+.||.+++||++..+-             +..+.                       
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            67889999999998664 577999999999999984321             11110                       


Q ss_pred             ----cccccccccccccceecccCc-ccceeeeecCc-ceEEeecchhhH-----HHHhHhHhhhhhhhcCCCCC
Q psy18074        117 ----NKQRQALDYSESLKQKYAHHP-QIRRIARHRQV-PRHIYNAQAEHR-----AIRSKQKRKESNKRTHSAPG  180 (197)
Q Consensus       117 ----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  180 (197)
                          ...-..+..|...|+.++|.| ....|+++.++ ...||++.+.-+     -+..=....|.|.+.+++..
T Consensus       273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ  347 (364)
T ss_pred             ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence                001134566677999999999 55677766655 789999987655     11112345677777777543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=6.1e-11  Score=91.23  Aligned_cols=130  Identities=16%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .|+++|..  +.....+..+...+.+..|+|||+.|+..+.   +..|++||+.++......  .+.+.+...+|+|||+
T Consensus       183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCC
Confidence            68888876  3445566677889999999999999887653   468999999988654332  3335677899999999


Q ss_pred             EEE-EEeCCCc--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc----ceEEeecc
Q psy18074         91 FVI-SASDEMN--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV----PRHIYNAQ  156 (197)
Q Consensus        91 ~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~~i~~~~  156 (197)
                      .|+ +.+.++.  |++||+.++... .+..+..        ......|+|||+.|+..++.    .+.++++.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceE-EccCCCC--------ccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence            876 5555554  778898876543 3332221        13578999999988854432    34555543

>KOG1538|consensus

Probab=99.37  E-value=1e-12  Score=100.97  Aligned_cols=142  Identities=17%  Similarity=0.153  Sum_probs=107.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .||..++.+.. ..+.+||... +..++.+.+|...|.+++|+.+|..+++|+.|..|.+|...-..   .+.-.|...|
T Consensus        22 PDGsqL~lAAg-~rlliyD~nd-G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkYSH~D~I   96 (1081)
T KOG1538|consen   22 PDGTQLILAAG-SRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKYSHNDAI   96 (1081)
T ss_pred             CCCceEEEecC-CEEEEEeCCC-cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---eeeeccCCee
Confidence            47777777754 4799999987 67889999999999999999999999999999999999865322   2223577899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      .|+.|+|-...|++++... .-+|...+..... ....         ..+.+.+|..||++++.|.. +.+.|-+....
T Consensus        97 QCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K-~kss---------~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK-HKSS---------SRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             eEeecCchHHHhhhcchhh-ccccChhhhhHHh-hhhh---------eeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence            9999999998998877543 5688776433221 1111         12578999999999997764 47777655433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=5.1e-11  Score=91.46  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             CCccEEEEEcCC---CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcE--EEEECCCCcccceeec
Q psy18074          1 MEAFVFTAANED---FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSL--RLYLAHQGHSRDIYHT   74 (197)
Q Consensus         1 ~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v--~i~d~~~~~~~~~~~~   74 (197)
                      .||..++..+.+   ..|++||+.+ +.. ..+....+....++|+|||+.|+.++ .+|.+  ++||+.++.....  .
T Consensus       213 PDG~~la~~s~~~~~~~i~i~dl~t-g~~-~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l--t  288 (429)
T PRK01742        213 PDGSKLAYVSFENKKSQLVVHDLRS-GAR-KVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL--T  288 (429)
T ss_pred             CCCCEEEEEEecCCCcEEEEEeCCC-Cce-EEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee--c
Confidence            367777766543   4699999975 322 12222233445789999999888764 57755  4557666654333  3


Q ss_pred             ccccceeEEEEccCCCEEEEEe-CCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecCcceEE
Q psy18074         75 KRMQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHI  152 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i  152 (197)
                      .+...+..++|+|||+.++..+ .++...+|++.... ....+ ....          ..+.|+|||++|+......+.+
T Consensus       289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----------~~~~~SpDG~~ia~~~~~~i~~  357 (429)
T PRK01742        289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----------YSAQISADGKTLVMINGDNVVK  357 (429)
T ss_pred             cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----------CCccCCCCCCEEEEEcCCCEEE
Confidence            3445678899999999877554 57788888765322 12222 1111          2467999999998666566777


Q ss_pred             eecchh
Q psy18074        153 YNAQAE  158 (197)
Q Consensus       153 ~~~~~~  158 (197)
                      |++...
T Consensus       358 ~Dl~~g  363 (429)
T PRK01742        358 QDLTSG  363 (429)
T ss_pred             EECCCC
Confidence            877554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.36  E-value=1e-10  Score=88.20  Aligned_cols=146  Identities=16%  Similarity=0.292  Sum_probs=111.1

Q ss_pred             EEEE-EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCcccceeecccccceeE
Q psy18074          5 VFTA-ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         5 ~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      +++. +..|+.+.+|+..........+..|...+..++|+|++..++.++. ++.+++|++..+.....+ ..|...+.+
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~  203 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSS  203 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEE
Confidence            3444 3448999999998523567778899999999999999998888875 999999999986665555 447789999


Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEEcCCCceee-eeccccccccccccccceecccCcccceee-eecCcceEEeecchhh
Q psy18074         83 TVWSLDNK-FVISASDEMNLRVWKAHASEKLG-YVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQAEH  159 (197)
Q Consensus        83 v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~~~  159 (197)
                      ++|+|++. .+++++.|+.+.+||...+.... .+..+...        . ...|+|++..++ .+.+..+.+|+.....
T Consensus       204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--------e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            99999998 55565899999999988666665 34444332        1 117899886666 5556688999987655


Q ss_pred             H
Q psy18074        160 R  160 (197)
Q Consensus       160 ~  160 (197)
                      .
T Consensus       275 ~  275 (466)
T COG2319         275 S  275 (466)
T ss_pred             c
Confidence            4

>KOG0974|consensus

Probab=99.36  E-value=1.6e-11  Score=98.03  Aligned_cols=146  Identities=13%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .-++++|+.-+.|.+|+......+. .+.+|++.+.++.|+.+|.++++.+.|+.+++|++.+.+.......+|...|..
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            4578889999999999997433444 678999999999999999999999999999999999988776545689999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEH  159 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~  159 (197)
                      ++|.|+  .+++++.|.+.++|+.. +..+..+..|....       +..++.+++.-.+.+ +.++.+.+|+.....
T Consensus       224 ~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~-------iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  224 CCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKG-------IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcc-------eeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            999998  89999999999999764 44455666555432       467777776655554 445578888775443

>KOG3881|consensus

Probab=99.35  E-value=3.7e-11  Score=86.77  Aligned_cols=148  Identities=12%  Similarity=0.172  Sum_probs=112.5

Q ss_pred             CccEEEEEcCC--CcEEEEEccCCCCceeecccC-------C--CCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcc
Q psy18074          2 EAFVFTAANED--FNLYSYDIRQLNSPLNVHKDM-------T--SAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~-------~--~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~   68 (197)
                      +..++++|+..  ..+.+||+... ..+..-..-       .  -.++++.|-|.  ...|++++.-+.|++||.+.++.
T Consensus       160 ~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  160 DPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             CCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence            45778889888  78999999853 332221111       1  13567788776  78999999999999999997764


Q ss_pred             cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-eccccccccccccccceecccCcccceeeeec-
Q psy18074         69 RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGY-VNNKQRQALDYSESLKQKYAHHPQIRRIARHR-  146 (197)
Q Consensus        69 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  146 (197)
                      ......-...+++++...|+++.+++|...+.+..||++++..... +.+..+.        +.++..+|.+.++|++. 
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs--------irsih~hp~~~~las~GL  310 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS--------IRSIHCHPTHPVLASCGL  310 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC--------cceEEEcCCCceEEeecc
Confidence            3332233357899999999999999999999999999999887765 5544443        68999999999999655 


Q ss_pred             CcceEEeecchh
Q psy18074        147 QVPRHIYNAQAE  158 (197)
Q Consensus       147 ~~~~~i~~~~~~  158 (197)
                      |..+.|+++...
T Consensus       311 DRyvRIhD~ktr  322 (412)
T KOG3881|consen  311 DRYVRIHDIKTR  322 (412)
T ss_pred             ceeEEEeecccc
Confidence            668899998773

>KOG4227|consensus

Probab=99.35  E-value=5.2e-11  Score=86.53  Aligned_cols=181  Identities=11%  Similarity=0.112  Sum_probs=127.6

Q ss_pred             CccEEEEEcCCCcEEEEEccC-----CCCceeeccc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ-----LNSPLNVHKD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~   74 (197)
                      ++.+|++|+.|..+++|++..     ..+|+..... |.+.|.|++|+...+.+++|..+++|.+.|+.+.+.+-++ ..
T Consensus        67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~  146 (609)
T KOG4227|consen   67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN  146 (609)
T ss_pred             CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence            578999999999999999752     1255555543 4588999999988889999999999999999998877665 22


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeee-ccccccccccccccceecccCc-ccceeeeec-Ccce
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE-KLGYV-NNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPR  150 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~  150 (197)
                      ...+.|+.+.-+|..+.+++.+.++.|.+||.+..+ .+..+ ....+.       .-..+.|+| .-.+|++.. ....
T Consensus       147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~-------~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK-------NFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc-------cceeeeecCCCceeEEeccccCCC
Confidence            234689999999999999999999999999998654 22211 111122       236788998 445566544 4578


Q ss_pred             EEeecchhhHHHHhHh-------HhhhhhhhcCCCCCCCCCchhhH
Q psy18074        151 HIYNAQAEHRAIRSKQ-------KRKESNKRTHSAPGTVPQTKERQ  189 (197)
Q Consensus       151 ~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  189 (197)
                      -+|+.+...+....--       ...+.-...+++.+.-.+..-|+
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence            9999987766554411       11222234566766655554444

>KOG0771|consensus

Probab=99.34  E-value=1.3e-11  Score=89.71  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=92.7

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         38 TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      ..++|+++|..+++++.||++++|+..+....... ..|...|.++.|+|||+.|++.+.| ..+||++.++..+....+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            68899999999999999999999997655443333 4567899999999999999999988 899999998843332220


Q ss_pred             ----------------------------ccccccc------------------cccccceecccCcccceeeeec-Ccce
Q psy18074        118 ----------------------------KQRQALD------------------YSESLKQKYAHHPQIRRIARHR-QVPR  150 (197)
Q Consensus       118 ----------------------------~~~~~~~------------------~~~~~v~~~~~s~~~~~l~~~~-~~~~  150 (197)
                                                  ....+..                  -....+++++.++||+++|.|. ++.+
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence                                        0000000                  0012688999999999999655 5699


Q ss_pred             EEeecchhhHHHH
Q psy18074        151 HIYNAQAEHRAIR  163 (197)
Q Consensus       151 ~i~~~~~~~~~~~  163 (197)
                      .|+++...++...
T Consensus       306 ai~~~~~lq~~~~  318 (398)
T KOG0771|consen  306 AIYDAKSLQRLQY  318 (398)
T ss_pred             EEEEeceeeeeEe
Confidence            9999988766443

>KOG1310|consensus

Probab=99.34  E-value=6.5e-12  Score=94.49  Aligned_cols=82  Identities=12%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             eeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEcc--CCCEEEEEeCCCcEEEE
Q psy18074         27 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL--DNKFVISASDEMNLRVW  104 (197)
Q Consensus        27 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~vw  104 (197)
                      ...+.+|++.|.++.|+.+|.+|++|+.|-.+.|||....+.+..+.++|...|.++.|-|  +.+.+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4567899999999999999999999999999999999988888888999999999999998  46778899999999999


Q ss_pred             EcCC
Q psy18074        105 KAHA  108 (197)
Q Consensus       105 d~~~  108 (197)
                      |+..
T Consensus       123 dl~~  126 (758)
T KOG1310|consen  123 DLDS  126 (758)
T ss_pred             eccc
Confidence            9985

>KOG0644|consensus

Probab=99.33  E-value=1.7e-12  Score=101.74  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=91.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      -|.++++|+.|..++||.+.+ +.+...+.+|.+.++.++.+.+..+++++++|..|++|-+..+..+.++ .+|.+.|+
T Consensus       201 tg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavt  278 (1113)
T KOG0644|consen  201 TGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVT  278 (1113)
T ss_pred             ccceEeecCccceeeeeeccc-hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hcccccee
Confidence            378999999999999999887 6888999999999999999998899999999999999999999988776 78999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      +++|+|-.    +.+.||++++||.+
T Consensus       279 aiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  279 AIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             eeccCccc----cCCCCCceEecccc
Confidence            99999964    77889999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=2.7e-10  Score=85.93  Aligned_cols=148  Identities=20%  Similarity=0.325  Sum_probs=109.4

Q ss_pred             CccEEEEEcC-CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANE-DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++..+++++. |+.+++|+... ......+..|...+.+++|+|++. .+++++.|+.+++||...+.........|...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         166 DGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             CCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence            4556777775 99999999986 567778888999999999999998 45555899999999988666655223455555


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      + ...|+|++..+++++.++.+++|+...... +..+..+        ...+.++.|+|++..++++. +..+.+|+...
T Consensus       245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~  315 (466)
T COG2319         245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--------SSSVLSVAFSPDGKLLASGSSDGTVRLWDLET  315 (466)
T ss_pred             e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--------CccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence            4 338999998888999999999999987665 3333222        23467889999777777544 33578886654


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      ..
T Consensus       316 ~~  317 (466)
T COG2319         316 GK  317 (466)
T ss_pred             Cc
Confidence            43

>KOG1524|consensus

Probab=99.32  E-value=4.3e-11  Score=89.97  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=74.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC---------------------------------------CCceeecccCCCCeEEEE
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL---------------------------------------NSPLNVHKDMTSAVTSVD   41 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~---------------------------------------~~~~~~~~~~~~~v~~~~   41 (197)
                      +||.-|++++.||.|++|.-..+                                       ...+-....|.+-|.++.
T Consensus       114 ~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~  193 (737)
T KOG1524|consen  114 PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLS  193 (737)
T ss_pred             CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEee
Confidence            47888999999999999982110                                       011123467889999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         42 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        42 ~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      |+|....+++|+.|-..++||.....+...  ..|..+|++++|+|+ ..++.++. ++.++=..+.|
T Consensus       194 W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~G  257 (737)
T KOG1524|consen  194 WSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRVG  257 (737)
T ss_pred             cCccccceeecCCceeEEeecccCcccccC--Chhccceeeeeeccc-cceeeeee-eeeeecCCCcc
Confidence            999999999999999999999874333222  456789999999998 55555543 33443333333

>KOG0644|consensus

Probab=99.31  E-value=1.2e-12  Score=102.49  Aligned_cols=117  Identities=16%  Similarity=0.266  Sum_probs=105.9

Q ss_pred             eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         28 NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        28 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      ..+.+|...|.|+.|.-.|.++++|+.|..++||.+.++.++... .+|.+.++.++.+.+...+++++.|..|++|.+.
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            346789999999999999999999999999999999999988776 7899999999999888889999999999999999


Q ss_pred             CCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074        108 ASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      .+.++..+.+|++.        |+.++|+|--   +++.++.+.||+.+
T Consensus       263 ~~~pvsvLrghtga--------vtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGA--------VTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             CCchHHHHhccccc--------eeeeccCccc---cCCCCCceEecccc
Confidence            99999988888876        7899999965   67778899999987

>KOG4227|consensus

Probab=99.30  E-value=3e-11  Score=87.75  Aligned_cols=125  Identities=12%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC------CcccceeecccccceeEEEEccCCCEEEEEeCCCcEE
Q psy18074         29 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ------GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLR  102 (197)
Q Consensus        29 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  102 (197)
                      .+.+|.+.|.++.|+.++++|++|+.|..+++|++..      .+.+.+....|...|.|++|+...+.+++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            4568999999999999999999999999999999863      3444444455668999999999999999999999999


Q ss_pred             EEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhh
Q psy18074        103 VWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEH  159 (197)
Q Consensus       103 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~  159 (197)
                      +.|+.+.+.+..+......      ..|+.+..+|..+.+++ ..+.-+.||+.+..+
T Consensus       131 ~HDiEt~qsi~V~~~~~~~------~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNR------GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             eeecccceeeeeecccCcc------cceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            9999999888776544322      23688999996666654 445578999987654

>KOG1963|consensus

Probab=99.30  E-value=1.2e-10  Score=91.66  Aligned_cols=159  Identities=14%  Similarity=0.144  Sum_probs=117.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccC---CCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQ---LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      +.+.++|+|..||+|.+|.--.   .......+.-|...|.++.|+++|.+|++|+..+.+.+|.+.+++....  ..-.
T Consensus       215 pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL--PRLg  292 (792)
T KOG1963|consen  215 PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL--PRLG  292 (792)
T ss_pred             cccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccc--cccC
Confidence            3678999999999999996432   1234556777889999999999999999999999999999999873222  2223


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc---ccccccccceecccCc-ccceeeeecCcceEEe
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ---ALDYSESLKQKYAHHP-QIRRIARHRQVPRHIY  153 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~i~  153 (197)
                      +.|..+.++||+.+.+....|+.|.+....+.....++.+....   .-....+..+.++++| .+..+..+..+.+++|
T Consensus       293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y  372 (792)
T KOG1963|consen  293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY  372 (792)
T ss_pred             CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence            78999999999999998899999999988765554444332211   0111133457788898 4444556666788999


Q ss_pred             ecchhhHH
Q psy18074        154 NAQAEHRA  161 (197)
Q Consensus       154 ~~~~~~~~  161 (197)
                      ++-+...+
T Consensus       373 dl~td~~i  380 (792)
T KOG1963|consen  373 DLYTDSTI  380 (792)
T ss_pred             ecccccee
Confidence            98776654

>KOG2321|consensus

Probab=99.30  E-value=3.8e-11  Score=90.79  Aligned_cols=142  Identities=14%  Similarity=0.203  Sum_probs=103.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeec------ccCCC-----CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVH------KDMTS-----AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~-----~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      -.+|++|+.+|.|..||.+.. ..+..+      ..|.+     .|+++.|+.+|-.+++|+.+|.++|||+++...+..
T Consensus       187 hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  187 HGLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             cceEEecccCceEEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence            357889999999999999863 222222      22333     399999999999999999999999999999887766


Q ss_pred             eecccccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-
Q psy18074         72 YHTKRMQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-  148 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-  148 (197)
                      -......+|..+.|.+.  +..+++ .+...++|||-.+|+....+.+...         +..+|+-|++-++.++.+. 
T Consensus       266 kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~---------lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  266 KDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD---------LNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             cccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC---------cCceeeecCCceEEEecCCC
Confidence            54444578899999875  334444 5567899999999998877665544         5788888876666655544 


Q ss_pred             ceEEeec
Q psy18074        149 PRHIYNA  155 (197)
Q Consensus       149 ~~~i~~~  155 (197)
                      .+..|-.
T Consensus       336 ~m~~yyi  342 (703)
T KOG2321|consen  336 KMHTYYI  342 (703)
T ss_pred             cceeEEc
Confidence            5544433

>KOG1517|consensus

Probab=99.29  E-value=9.1e-11  Score=94.39  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=106.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcc--cceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHS--RDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~   77 (197)
                      .|.++++|. -..|+|||... ...+..+. +....++++.-+- .|+.++.|..||.|++||.+....  .......|.
T Consensus      1177 ~G~Ll~tGd-~r~IRIWDa~~-E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1177 SGHLLVTGD-VRSIRIWDAHK-EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred             CCeEEecCC-eeEEEEEeccc-ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence            355566654 67899999986 44444443 3345567665433 478999999999999999986432  333345565


Q ss_pred             cc--eeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccccccccccc--cccceecccCcccceeeeecCcceEE
Q psy18074         78 QH--VTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYS--ESLKQKYAHHPQIRRIARHRQVPRHI  152 (197)
Q Consensus        78 ~~--v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~i  152 (197)
                      ..  |..+.+.+.|- .|++|+.+|.|++||++.......+.-..     ..  ++..+++..|++...+|+|+...+.|
T Consensus      1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~-----~~~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA-----HWEYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred             CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-----ccccCccceeeeeccCCCeeeecCcceEEE
Confidence            55  99999988664 49999999999999999642222111110     00  12368999999999999999889999


Q ss_pred             eecchhhHH
Q psy18074        153 YNAQAEHRA  161 (197)
Q Consensus       153 ~~~~~~~~~  161 (197)
                      |++...+..
T Consensus      1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred             EecChhhhc
Confidence            998765543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4.6e-10  Score=86.37  Aligned_cols=144  Identities=13%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             CccEEEEEcC---CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANE---DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.|+..+.   +..|++||+.. +. ...+....+...++.|+|+|+.++. .+.++  .|++||+.++.....  ..
T Consensus       214 Dg~~la~~s~~~~~~~l~~~dl~~-g~-~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l--t~  289 (433)
T PRK04922        214 DGKKLAYVSFERGRSAIYVQDLAT-GQ-RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL--TN  289 (433)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCC-CC-EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC--cc
Confidence            6776776543   34699999975 33 2334444555668899999998764 45555  699999998875443  23


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CCc--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-Cc---
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EMN--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QV---  148 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~---  148 (197)
                      +......++|+|||++++..+. +|.  |+++|+.+++... +.....        ....++|+|||++|+... ..   
T Consensus       290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~--------~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN--------YNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC--------CccCEEECCCCCEEEEEECCCCce
Confidence            3344567899999999886654 444  6777776655332 221111        124688999999998432 22   


Q ss_pred             ceEEeecchh
Q psy18074        149 PRHIYNAQAE  158 (197)
Q Consensus       149 ~~~i~~~~~~  158 (197)
                      .+.+|++...
T Consensus       361 ~I~v~d~~~g  370 (433)
T PRK04922        361 RIAVMDLSTG  370 (433)
T ss_pred             eEEEEECCCC
Confidence            4677876543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4e-10  Score=86.46  Aligned_cols=129  Identities=16%  Similarity=0.130  Sum_probs=86.9

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe---CCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG---YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .|.++|...  ...+.+..+...+.+..|||||+.|+..+   .+..+++|++.+++......  ..+.+..++|+|||+
T Consensus       180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~  255 (429)
T PRK03629        180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGS  255 (429)
T ss_pred             eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCC
Confidence            588888873  22344555677899999999999988654   34579999998876543321  123455789999999


Q ss_pred             EEEEE-eCCC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--cceEEeec
Q psy18074         91 FVISA-SDEM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--VPRHIYNA  155 (197)
Q Consensus        91 ~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~~~i~~~  155 (197)
                      .|+.. +.+|  .|++||+.+++....... ..        .+..+.|+|||+.|+..++  ....||..
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~--------~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--------NNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC--------CcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            88854 4444  588999987765433222 11        2467899999998875443  23456643

>KOG0650|consensus

Probab=99.29  E-value=2.8e-11  Score=91.88  Aligned_cols=153  Identities=10%  Similarity=0.118  Sum_probs=102.4

Q ss_pred             ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCE-EEEEeCCCcEEEE
Q psy18074         26 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKF-VISASDEMNLRVW  104 (197)
Q Consensus        26 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~vw  104 (197)
                      +...+.+|.+.|.++...|.|.+|++|+.||+|++|.+.+|+++......  +.|.||+|+|.+.. ++....+..+.+-
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEe
Confidence            34457899999999999999999999999999999999999999887554  68999999997654 3333334446665


Q ss_pred             EcCCCcee---------eee-------------ccc-----cc--cccccccccceecccCcccceeeeecC----cceE
Q psy18074        105 KAHASEKL---------GYV-------------NNK-----QR--QALDYSESLKQKYAHHPQIRRIARHRQ----VPRH  151 (197)
Q Consensus       105 d~~~~~~~---------~~~-------------~~~-----~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~~  151 (197)
                      +..-|..+         ...             ...     ..  .....+...|..+.||..|.+|++...    ..+.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            54333111         000             000     00  112223457889999999999995443    4678


Q ss_pred             EeecchhhHHHHhHhHhhhhhhhcCCCCC
Q psy18074        152 IYNAQAEHRAIRSKQKRKESNKRTHSAPG  180 (197)
Q Consensus       152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (197)
                      |+.+.+.+.+.-+.+.+-.....++-+..
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~  578 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSK  578 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCC
Confidence            88887776664444444444444444433

>KOG1587|consensus

Probab=99.28  E-value=9.7e-11  Score=90.88  Aligned_cols=146  Identities=13%  Similarity=0.103  Sum_probs=105.0

Q ss_pred             CccEEEEEcCCCcEEEEEcc---CCC----CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCcccceee
Q psy18074          2 EAFVFTAANEDFNLYSYDIR---QLN----SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH-QGHSRDIYH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~---~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~   73 (197)
                      +.+.|++|+.+|.|+--+..   ...    +....+..|.++|.++.++|-+..++..+.|..++||... ....+..+ 
T Consensus       359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-  437 (555)
T KOG1587|consen  359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-  437 (555)
T ss_pred             CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh-
Confidence            57789999999999873332   211    2244566788999999999988877766669999999987 33333333 


Q ss_pred             cccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCc--eeeeeccccccccccccccceecccCcccceeeeecCc-c
Q psy18074         74 TKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASE--KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-P  149 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~  149 (197)
                      ..+...|++++|||.-. .++++..+|.+.+||+....  ++.....+ ..       ....+.|+++|+.|+.|... .
T Consensus       438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~-------~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SP-------ALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-cc-------ccceeecCCCCcEEEEecCCCc
Confidence            34456699999999754 56688889999999997533  23222222 11       24678899999999988765 7


Q ss_pred             eEEeecc
Q psy18074        150 RHIYNAQ  156 (197)
Q Consensus       150 ~~i~~~~  156 (197)
                      +.+|++.
T Consensus       510 ~~~~~l~  516 (555)
T KOG1587|consen  510 THILKLS  516 (555)
T ss_pred             EEEEEcC
Confidence            8999885

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.28  E-value=5.8e-10  Score=83.66  Aligned_cols=133  Identities=14%  Similarity=0.097  Sum_probs=89.7

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      +++-..++.|.+.|..+ .+.+..+.........+.++|||+++++++.||.|.++|+.+++.+.....+  ....++++
T Consensus         9 ~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~   85 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAV   85 (369)
T ss_dssp             EEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE
T ss_pred             EEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEE
Confidence            35667789999999987 5777777654444566789999999999999999999999999988877555  56789999


Q ss_pred             ccCCCEEEEE-eCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         86 SLDNKFVISA-SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        86 ~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ++||++++++ ...+.+.++|..+.+.+..+.......-. ..+.+..+..+|....+
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVAAIVASPGRPEF  142 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EEEEEE-SSSSEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCceeEEecCCCCEE
Confidence            9999999866 46899999999999888876543221100 12234455556655533

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=8.7e-10  Score=84.64  Aligned_cols=132  Identities=13%  Similarity=0.090  Sum_probs=86.1

Q ss_pred             CCccEEEEE-cCCC--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcccceeec
Q psy18074          1 MEAFVFTAA-NEDF--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K--SLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         1 ~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~   74 (197)
                      .||..|+.. +.++  .|++||+.+ +. ...+..+...+....|+|+|+.|+..+.+ +  .|+++++.++....... 
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-  328 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-  328 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-
Confidence            367766643 4444  488899875 33 34454555677889999999988776654 3  56666777665433322 


Q ss_pred             ccccceeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDE---MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                       .......++|+|||++++..+.+   ..|.+||+.+++.. .+.....         .....|+|||++|+...
T Consensus       329 -~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~---------~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        329 -EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFL---------DETPSIAPNGTMVIYSS  392 (429)
T ss_pred             -CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCC---------CCCceECCCCCEEEEEE
Confidence             22345678999999998865443   35888999877643 3332111         24678999999998544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.26  E-value=1.1e-09  Score=81.36  Aligned_cols=153  Identities=10%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCC---ceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccc-----e
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNS---PLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRD-----I   71 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~-----~   71 (197)
                      +++++++++ .++.|.+|++...+.   ....+. +.....+++++|+++++++++ .++.|.+||+.+...+.     .
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            566666654 478899999964232   222222 233467788999999886554 56899999997632221     1


Q ss_pred             eecccccceeEEEEccCCCEEEEEeC-CCcEEEEEcCC--Cc--eeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASD-EMNLRVWKAHA--SE--KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      ........+..++|+|+|++++++.. ++.|.+|++..  +.  .+..+...... .. .......+.++|+++++.++.
T Consensus       169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-~~-~~~~~~~i~~~pdg~~lyv~~  246 (330)
T PRK11028        169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-FS-DTRWAADIHITPDGRHLYACD  246 (330)
T ss_pred             eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-CC-CCccceeEEECCCCCEEEEec
Confidence            11111245678999999999987765 89999999973  22  22222111100 00 011123588999999888654


Q ss_pred             --CcceEEeecch
Q psy18074        147 --QVPRHIYNAQA  157 (197)
Q Consensus       147 --~~~~~i~~~~~  157 (197)
                        .+.+.+|+...
T Consensus       247 ~~~~~I~v~~i~~  259 (330)
T PRK11028        247 RTASLISVFSVSE  259 (330)
T ss_pred             CCCCeEEEEEEeC
Confidence              34678888754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.1e-10  Score=86.44  Aligned_cols=133  Identities=20%  Similarity=0.159  Sum_probs=84.6

Q ss_pred             CccEEE-EEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEE--ECCCCcccceeecccc
Q psy18074          2 EAFVFT-AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLY--LAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~--d~~~~~~~~~~~~~~~   77 (197)
                      ||..++ +.+.++...+|.+...+.....+..+.+......|+|||+.|+..+. ++...+|  ++.++........+  
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--  327 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--  327 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--
Confidence            666565 56777776666554223335555555556677899999998876553 4555555  44555433332122  


Q ss_pred             cceeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         78 QHVTHTVWSLDNKFVISASDEM---NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      ......+|+|+|++++..+.++   .|.+||+.+++... +.....         ...+.|+|||+.|+...
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~---------~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTR---------DESPSFAPNGRYILYAT  389 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCC---------ccCceECCCCCEEEEEE
Confidence            3345688999999998666543   69999998776443 322211         25789999999988443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=6e-10  Score=85.54  Aligned_cols=131  Identities=16%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCcccceeecccccceeEEEEccCC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD---KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN   89 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~   89 (197)
                      ..|.++|..  +.....+..+...+.+.+|+|+|+.|+..+.+   ..|++||+.++......  ...+.+..++|+|||
T Consensus       176 ~~L~~~D~d--G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDAD--GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCC--CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCCC
Confidence            356677764  34444555677889999999999999876643   46999999988754432  222456789999999


Q ss_pred             CEEE-EEeCCCcEEEEE--cCCCceeeeeccccccccccccccceecccCcccceeeeecC--cceEEeecc
Q psy18074         90 KFVI-SASDEMNLRVWK--AHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--VPRHIYNAQ  156 (197)
Q Consensus        90 ~~l~-~~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~~~i~~~~  156 (197)
                      +.|+ +.+.++...+|.  +.++. ...+..+..        ....+.|+|||+.|+..++  +...||...
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCC--------CCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence            9887 566777766664  44443 333332221        1356789999998874432  345666653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=4.9e-10  Score=86.29  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             CccEEEEEc---CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAAN---EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.|+..+   .+..|++||+.+ +. ...+..+.+.+....|+|+|+.|+ +.+.++  .|++||+.++.....  ..
T Consensus       212 DG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L--t~  287 (435)
T PRK05137        212 NRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL--TD  287 (435)
T ss_pred             CCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc--cC
Confidence            677666543   346799999975 33 344555667788899999999876 445554  488889988765443  23


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC----c
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ----V  148 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~  148 (197)
                      +.......+|+|||+.++..+. +|  .|+++|+.+++... +.....        .+..+.|+|||++|+....    .
T Consensus       288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~--------~~~~~~~SpdG~~ia~~~~~~~~~  358 (435)
T PRK05137        288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG--------RYSTPVWSPRGDLIAFTKQGGGQF  358 (435)
T ss_pred             CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC--------cccCeEECCCCCEEEEEEcCCCce
Confidence            3345678999999999886654 33  68888887655432 322211        1356789999999985332    2


Q ss_pred             ceEEeec
Q psy18074        149 PRHIYNA  155 (197)
Q Consensus       149 ~~~i~~~  155 (197)
                      .+.+|+.
T Consensus       359 ~i~~~d~  365 (435)
T PRK05137        359 SIGVMKP  365 (435)
T ss_pred             EEEEEEC
Confidence            3556665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.25  E-value=1.2e-09  Score=81.12  Aligned_cols=143  Identities=15%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             EEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECC-CCcccceeecccccce
Q psy18074          5 VFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAH-QGHSRDIYHTKRMQHV   80 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~-~~~~~~~~~~~~~~~v   80 (197)
                      ++++...++.|++||+...+.  .+..+. +.+....+.++|+++.|++++ .++.|.+|++. ++.............+
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            456667789999999964232  334443 345678899999999887654 57889999986 3433211111122456


Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEEcCCCc-e---eeeeccccccccccccccceecccCcccceee-eecC-cceEEe
Q psy18074         81 THTVWSLDNKFVISAS-DEMNLRVWKAHASE-K---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQ-VPRHIY  153 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-~~~~i~  153 (197)
                      ..++|+|+++++++++ .++.|.+|++.+.. .   +..+...         .....++++|+++++. ++.. +.+.+|
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~p~g~~l~v~~~~~~~v~v~  153 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL---------EGCHSANIDPDNRTLWVPCLKEDRIRLF  153 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC---------CcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence            7899999999988765 48899999996422 1   1111111         1136778999998885 4443 578999


Q ss_pred             ecch
Q psy18074        154 NAQA  157 (197)
Q Consensus       154 ~~~~  157 (197)
                      +...
T Consensus       154 d~~~  157 (330)
T PRK11028        154 TLSD  157 (330)
T ss_pred             EECC
Confidence            9865

>KOG1240|consensus

Probab=99.24  E-value=5.5e-10  Score=91.13  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=108.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--ccc----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG--HSR----   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~--~~~----   69 (197)
                      ++.+|++|+.||+|++|+.++..      +...++....+.+..+.+.+.+..+|+++.||.|.+..+...  ...    
T Consensus      1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred             CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence            35799999999999999987432      122233334678999999999999999999999999887631  000    


Q ss_pred             -------------c-------------ee----------------------ecccccceeEEEEccCCCEEEEEeCCCcE
Q psy18074         70 -------------D-------------IY----------------------HTKRMQHVTHTVWSLDNKFVISASDEMNL  101 (197)
Q Consensus        70 -------------~-------------~~----------------------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i  101 (197)
                                   .             ..                      ....++.|++++.+|.+++++.|+..|.+
T Consensus      1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred             eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE
Confidence                         0             00                      00025889999999999999999999999


Q ss_pred             EEEEcCCCceeeeeccccccccccccccceecccCc---ccceee-ee--cCcceEEeecchhhHH
Q psy18074        102 RVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP---QIRRIA-RH--RQVPRHIYNAQAEHRA  161 (197)
Q Consensus       102 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~-~~--~~~~~~i~~~~~~~~~  161 (197)
                      .+||++-+.++..+......       ++..++.+|   ....++ ++  +.+.+.+|++..+.+.
T Consensus      1220 ~lWDLRF~~~i~sw~~P~~~-------~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1220 VLWDLRFRVPILSWEHPARA-------PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             EEEEeecCceeecccCcccC-------CcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            99999988888766554432       234554444   223333 22  3457899998877543

>KOG1963|consensus

Probab=99.24  E-value=3.2e-10  Score=89.31  Aligned_cols=140  Identities=15%  Similarity=0.152  Sum_probs=101.6

Q ss_pred             CCCcEEEEEccCCCCce---eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--C-cccceeecccccceeEEE
Q psy18074         11 EDFNLYSYDIRQLNSPL---NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ--G-HSRDIYHTKRMQHVTHTV   84 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~--~-~~~~~~~~~~~~~v~~v~   84 (197)
                      .+..+++|+..+.....   ..-..|...+++.++||.+.+++++..||.|.+|.-..  + ........-|...|.+++
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~  258 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS  258 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence            34567788876522111   11234566789999999999999999999999996433  2 222222344668999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCcceEEeecchhh
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQAEH  159 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~~~  159 (197)
                      |+++|.+|++|+.+|.+.+|.+.+++  ..+.+.-.       +++..+.+|||+...+ ...|+.+.+..+....
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLg-------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLG-------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCC--cccccccC-------CeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            99999999999999999999999887  33444333       3468999999998777 5556788888775543

>KOG0280|consensus

Probab=99.24  E-value=1.5e-10  Score=80.96  Aligned_cols=149  Identities=13%  Similarity=0.031  Sum_probs=107.0

Q ss_pred             cEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECC-CCcccceeecccccce
Q psy18074          4 FVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAH-QGHSRDIYHTKRMQHV   80 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~v   80 (197)
                      .-++++..+|.+.+-+.... -+.++..+.|+-+++...|+.. .+.+++|+.|+.+..||++ .++.+..-...|...|
T Consensus       134 ~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV  213 (339)
T KOG0280|consen  134 TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV  213 (339)
T ss_pred             ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence            34677777888875444321 1335577889999999999774 4678899999999999999 4444444345677899


Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEEcCC-CceeeeeccccccccccccccceecccCc--ccceeeeecCcceEEeecc
Q psy18074         81 THTVWSL-DNKFVISASDEMNLRVWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHP--QIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~i~~~~  156 (197)
                      .++.-+| .+.++++|+.|..|++||.++ ++++..-.-. +        .|..+.++|  .+..++++.+....|.+..
T Consensus       214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G--------GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G--------GVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             EEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c--------ceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence            9998877 578899999999999999995 4554332222 1        267888888  4566777788888887776


Q ss_pred             hhhHH
Q psy18074        157 AEHRA  161 (197)
Q Consensus       157 ~~~~~  161 (197)
                      ....+
T Consensus       285 ~~~~e  289 (339)
T KOG0280|consen  285 DKVLE  289 (339)
T ss_pred             ccccc
Confidence            55443

>KOG1538|consensus

Probab=99.23  E-value=4.6e-11  Score=92.06  Aligned_cols=110  Identities=13%  Similarity=0.253  Sum_probs=90.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .|..++|-|||+.|+.+..+ .+.+||...|..+..+ .+|...|++++|+.||+.+++|+.|..|.+|...-..   .+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence            78999999999998877644 5899999999988887 7899999999999999999999999999999754222   22


Q ss_pred             ccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074        116 NNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus       116 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      ...+       .+.|.|+.|+|-...+++++-...-+|...+
T Consensus        89 kYSH-------~D~IQCMsFNP~~h~LasCsLsdFglWS~~q  123 (1081)
T KOG1538|consen   89 KYSH-------NDAIQCMSFNPITHQLASCSLSDFGLWSPEQ  123 (1081)
T ss_pred             eecc-------CCeeeEeecCchHHHhhhcchhhccccChhh
Confidence            2222       2346899999999999998888888997643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.2e-09  Score=82.64  Aligned_cols=131  Identities=11%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             CccEEE-EEcCCC--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFT-AANEDF--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||..++ +.+.++  .|++||+.. +. ...+..+......+.|+|+|+.|+.++. ++  .|+++++.++........+
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g  335 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG  335 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC
Confidence            566554 444444  589999875 33 4455555555678899999998887663 44  4777787776644332222


Q ss_pred             cccceeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEM---NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                        .....++|+|+|++++..+.++   .|.+||+.+++.. .+.....         ...+.|+|||++|+...
T Consensus       336 --~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~---------~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        336 --NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSL---------DESPSFAPNGSMVLYAT  397 (433)
T ss_pred             --CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCC---------CCCceECCCCCEEEEEE
Confidence              3455789999999998654432   5999999877654 3322111         24678999999887443

>KOG1587|consensus

Probab=99.20  E-value=4.3e-10  Score=87.37  Aligned_cols=171  Identities=12%  Similarity=0.077  Sum_probs=112.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc-ee----ecccCCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCcc------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP-LN----VHKDMTSAVTSVDYSPTG--REFVAGGYDKSLRLYLAHQGHS------   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~----~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~~~~~~------   68 (197)
                      ++++++.|+.+|+|.+||++..... ..    ....|..+++.+.|-.+-  .-|++++.||.|..|+++.-..      
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~  333 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL  333 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence            6789999999999999999864432 11    224578899999996643  4599999999999998871100      


Q ss_pred             ---------------------------------------cc-----------------eeecccccceeEEEEccCCCEE
Q psy18074         69 ---------------------------------------RD-----------------IYHTKRMQHVTHTVWSLDNKFV   92 (197)
Q Consensus        69 ---------------------------------------~~-----------------~~~~~~~~~v~~v~~~~~~~~l   92 (197)
                                                             ..                 .....|.+.|+++.++|-+..+
T Consensus       334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence                                                   00                 0012256889999999977666


Q ss_pred             EEEeCCCcEEEEEcC-CCceeeeeccccccccccccccceecccCccc-ceeeeec-CcceEEeecchhhHHHHh--HhH
Q psy18074         93 ISASDEMNLRVWKAH-ASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QVPRHIYNAQAEHRAIRS--KQK  167 (197)
Q Consensus        93 ~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~~~i~~~~~~~~~~~~--~~~  167 (197)
                      +..+.|-.+++|.-. ...++..+.....        .+.+++|||.- ..++++. ++.+.|||+.........  ...
T Consensus       414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~--------~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~  485 (555)
T KOG1587|consen  414 FLSVGDWTVRIWSEDVIASPLLSLDSSPD--------YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC  485 (555)
T ss_pred             eeeeccceeEeccccCCCCcchhhhhccc--------eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc
Confidence            655558999999876 4444433333222        26899999943 4555555 668999999876553322  223


Q ss_pred             hhhhhhhcCCCCC
Q psy18074        168 RKESNKRTHSAPG  180 (197)
Q Consensus       168 ~~~~~~~~~~~~~  180 (197)
                      ..-.+++.++.++
T Consensus       486 ~~~l~~~~~s~~g  498 (555)
T KOG1587|consen  486 SPALTRVRWSPNG  498 (555)
T ss_pred             ccccceeecCCCC
Confidence            3334444444434

>KOG0322|consensus

Probab=99.20  E-value=7.2e-11  Score=81.48  Aligned_cols=99  Identities=19%  Similarity=0.340  Sum_probs=79.1

Q ss_pred             EEEcCCCcEEEEEccCC-CC-cee-ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          7 TAANEDFNLYSYDIRQL-NS-PLN-VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~-~~-~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ++|+.+..+..|++... +. ++. .+.-..-.+..+...||++.+++++-|+.+++|..++...+.++ .-|...|+++
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyHsagvn~v  299 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYHSAGVNAV  299 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhhhcceeEE
Confidence            34566667888887632 11 111 12222346888999999999999999999999999999988877 5577999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEc
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      +|+|+...+|.++.|+.|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999986

>KOG2315|consensus

Probab=99.19  E-value=1.1e-09  Score=82.70  Aligned_cols=129  Identities=13%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE--EeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA--GGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .+++++++.. ......+ .-.++|.++.|+|+++.+++  |-.-..+.|||++- ..+..+   ..++-+++-|+|.|+
T Consensus       251 q~Lyll~t~g-~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df---~egpRN~~~fnp~g~  324 (566)
T KOG2315|consen  251 QTLYLLATQG-ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF---PEGPRNTAFFNPHGN  324 (566)
T ss_pred             ceEEEEEecC-ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC---CCCCccceEECCCCC
Confidence            3577777762 2333333 33799999999999987764  55677999999884 333333   225678899999999


Q ss_pred             EEEEEeC---CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-------CcceEEeecch
Q psy18074         91 FVISASD---EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-------QVPRHIYNAQA  157 (197)
Q Consensus        91 ~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~i~~~~~  157 (197)
                      +++.++.   .|.|.+||+.+.+.+..+.....          +-+.|+|||+++.++.       ++.+.||+...
T Consensus       325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----------t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEEEeecCCCCCceEEEeccchhhccccccCCc----------eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9987664   58899999999888877765443          5678999999998543       34568888753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.16  E-value=5e-09  Score=80.27  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             CccEEEEEcCC---CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCC--CcEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANED---FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYD--KSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d--~~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.++....+   ..|++||+.+ +. ...+..+.+.+.++.|+|+|..|+. .+.+  ..|++|++.++......  .
T Consensus       200 dg~~la~~~~~~~~~~i~v~d~~~-g~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~--~  275 (417)
T TIGR02800       200 DGQKLAYVSFESGKPEIYVQDLAT-GQ-REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT--N  275 (417)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCC-CC-EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC--C
Confidence            56666665433   4799999975 33 2334445566778999999997764 3433  36889999877644332  2


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc----
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV----  148 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----  148 (197)
                      +.......+|+|+|++|+..+. .+  .|+++|+.+++.. .+.....        ....+.|+|+|++|+.....    
T Consensus       276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~--------~~~~~~~spdg~~i~~~~~~~~~~  346 (417)
T TIGR02800       276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG--------YNASPSWSPDGDLIAFVHREGGGF  346 (417)
T ss_pred             CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC--------CccCeEECCCCCEEEEEEccCCce
Confidence            3244557789999999876554 33  5888888766533 2222211        23577899999988854432    


Q ss_pred             ceEEeecch
Q psy18074        149 PRHIYNAQA  157 (197)
Q Consensus       149 ~~~i~~~~~  157 (197)
                      .+.++++..
T Consensus       347 ~i~~~d~~~  355 (417)
T TIGR02800       347 NIAVMDLDG  355 (417)
T ss_pred             EEEEEeCCC
Confidence            456666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3914|consensus

Probab=99.15  E-value=3.9e-10  Score=81.81  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy18074         25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW  104 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vw  104 (197)
                      .+...+.+|.+.++.++|+||++.++++..|..|++-.......+..+..+|...|..++.-++ ..|++++.|+++++|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            3444556899999999999999999999999999998877666666676789999999998764 458999999999999


Q ss_pred             EcCCCceeeeec
Q psy18074        105 KAHASEKLGYVN  116 (197)
Q Consensus       105 d~~~~~~~~~~~  116 (197)
                      |+.+|+.+.++.
T Consensus       221 d~~sgk~L~t~d  232 (390)
T KOG3914|consen  221 DITSGKLLDTCD  232 (390)
T ss_pred             ecccCCcccccc
Confidence            999999876654

>KOG2321|consensus

Probab=99.14  E-value=1e-09  Score=83.22  Aligned_cols=143  Identities=12%  Similarity=0.112  Sum_probs=107.1

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-----ccc-----cce
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-----KRM-----QHV   80 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~-----~~v   80 (197)
                      ....|+-+++.. +.-+..+....+.++++..++-..+|++|+.+|.|-.||.+.......+..     .|.     ..|
T Consensus       153 sg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~sv  231 (703)
T KOG2321|consen  153 SGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSV  231 (703)
T ss_pred             cCcceEEEEccc-cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcc
Confidence            345688888886 566777766668999999999999999999999999999997655444321     122     349


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc--cceeeeecCcceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ--IRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~i~~~~~~  158 (197)
                      +++.|+.+|-.+++|+.+|.+.+||+++.+++..- .|..      ..++..+.|.+.  ...+++....-+.||+-...
T Consensus       232 Tal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~------e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  232 TALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGY------ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG  304 (703)
T ss_pred             eEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCC------ccceeeecccccCCCceEEecchHHhhhcccccC
Confidence            99999999999999999999999999988776432 2222      123678888764  56677766667788887665


Q ss_pred             hHH
Q psy18074        159 HRA  161 (197)
Q Consensus       159 ~~~  161 (197)
                      +..
T Consensus       305 k~~  307 (703)
T KOG2321|consen  305 KPM  307 (703)
T ss_pred             Cce
Confidence            543

>KOG4547|consensus

Probab=99.13  E-value=3e-09  Score=80.68  Aligned_cols=144  Identities=10%  Similarity=0.063  Sum_probs=116.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH--KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      |...++-|...|.|.+|+... ++....+  ..|.+.|.++.++.+...|++++.|+.+..|+.......+.. ......
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~  146 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPL  146 (541)
T ss_pred             CceEEEeecCCccEEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCc
Confidence            456788899999999999986 4544444  368899999999998899999999999999999988776665 334467


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc-----cceeeeecC--cceEE
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ-----IRRIARHRQ--VPRHI  152 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~--~~~~i  152 (197)
                      +.+++.+|||..+++++  +.|.+||+.+++.+.++++|...        |.+++|..+     |.++.++..  ..+.+
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~--------v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP--------VRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc--------eEEEEEEEeccccccceeeeccccccceeE
Confidence            89999999999998875  57999999999999999888764        788888766     677765543  35677


Q ss_pred             eecch
Q psy18074        153 YNAQA  157 (197)
Q Consensus       153 ~~~~~  157 (197)
                      |....
T Consensus       217 w~v~~  221 (541)
T KOG4547|consen  217 WVVEK  221 (541)
T ss_pred             EEEEc
Confidence            77654

>KOG1334|consensus

Probab=99.13  E-value=2e-10  Score=85.38  Aligned_cols=152  Identities=18%  Similarity=0.287  Sum_probs=110.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC-----ceeeccc------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS-----PLNVHKD------MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~--   68 (197)
                      +.+.+++|+.|..+++||.+....     ++..+..      ..-.|++++|+.++.-|+++..|-.|++|.-.-+..  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            456899999999999999874221     1222222      224699999998888777778888899995442211  


Q ss_pred             ----------cceeecccc--cceeEEEE-ccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         69 ----------RDIYHTKRM--QHVTHTVW-SLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        69 ----------~~~~~~~~~--~~v~~v~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                                +...+.+|.  ..|..+.| -|...|+++|++.|.|++|+-.+++.+..+.+...        .|+||.-
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--------VVNCLEp  444 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--------VVNCLEP  444 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--------eEeccCC
Confidence                      122235564  34777765 78899999999999999999999988877766554        2789999


Q ss_pred             Ccccceeee-ecCcceEEeecchhhHH
Q psy18074        136 HPQIRRIAR-HRQVPRHIYNAQAEHRA  161 (197)
Q Consensus       136 s~~~~~l~~-~~~~~~~i~~~~~~~~~  161 (197)
                      +|---.||+ |-+..+.||.....++.
T Consensus       445 HP~~PvLAsSGid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  445 HPHLPVLASSGIDHDVKIWTPLTAERA  471 (559)
T ss_pred             CCCCchhhccCCccceeeecCCccccc
Confidence            998888885 55679999988554443

>KOG0642|consensus

Probab=99.12  E-value=2.8e-10  Score=85.79  Aligned_cols=130  Identities=11%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---C---cccce-eecccccceeEEEEccCCCEEEEEeCCCcE
Q psy18074         29 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ---G---HSRDI-YHTKRMQHVTHTVWSLDNKFVISASDEMNL  101 (197)
Q Consensus        29 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~---~---~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i  101 (197)
                      .+..|...++.+.|.|....|++++.|+.+.+|++..   .   ..... ...+|.++|.|+++.+++.++++|+-||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            4556778899999999999999999999999999932   1   11111 146799999999999999999999999999


Q ss_pred             EEEEcCCCceeeeeccc----cccccccccccceecccCcccceee-eecCcceEEeecchhhH
Q psy18074        102 RVWKAHASEKLGYVNNK----QRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQAEHR  160 (197)
Q Consensus       102 ~vwd~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~~~~  160 (197)
                      +.|++....  ......    ....+.++.+.++.+++|+....|+ ++.++.+.+|+......
T Consensus       369 ~~w~~p~n~--dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  369 RCWNLPPNQ--DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             eeeccCCCC--CcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            999775211  111111    1245566677789999999776666 55677999998765544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=7.1e-09  Score=79.82  Aligned_cols=120  Identities=13%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD---KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .|.++|...  .....+..+...+....|+|+|+.|+..+.+   ..|++|++.++......  ...+.+..++|+|||+
T Consensus       180 ~l~~~d~~g--~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDG--ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCC--CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCC
Confidence            367777763  3344455667788999999999998876533   36999999988654432  1123455789999999


Q ss_pred             EEE-EEeCCC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         91 FVI-SASDEM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        91 ~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      .|+ +.+.+|  .|++||+.++.... +.....        ......|+|||+.|+..+
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~--------~~~~~~~spDg~~i~f~s  305 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA--------IDTEPFWGKDGRTLYFTS  305 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEE-cccCCC--------CcCCeEECCCCCEEEEEE
Confidence            887 444444  58888998776432 322221        135678999999887443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.4e-08  Score=78.19  Aligned_cols=144  Identities=7%  Similarity=0.023  Sum_probs=89.7

Q ss_pred             CccEEEEEcCC---CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANED---FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.|+..+.+   ..|++||+.+ +. ...+....+.+....|+|+|+.|+. .+.++  .|++||+.++......  .
T Consensus       209 DG~~la~~s~~~~~~~l~~~~l~~-g~-~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt--~  284 (430)
T PRK00178        209 DGKRIAYVSFEQKRPRIFVQNLDT-GR-REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT--N  284 (430)
T ss_pred             CCCEEEEEEcCCCCCEEEEEECCC-CC-EEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc--c
Confidence            67766554322   3588899875 33 2334344455667899999998874 44444  6888899887654332  3


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--c--
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--V--  148 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~--  148 (197)
                      +........|+|||+.++..+. ++  .|+++|+.+++.........         ......|+|||++|+....  .  
T Consensus       285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~---------~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN---------YNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---------CccceEECCCCCEEEEEEccCCce
Confidence            3345667899999998876553 33  57778887766433221111         1235679999999984332  2  


Q ss_pred             ceEEeecchh
Q psy18074        149 PRHIYNAQAE  158 (197)
Q Consensus       149 ~~~i~~~~~~  158 (197)
                      .+.++++...
T Consensus       356 ~l~~~dl~tg  365 (430)
T PRK00178        356 HVAAQDLQRG  365 (430)
T ss_pred             EEEEEECCCC
Confidence            3456666543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=8.6e-09  Score=79.58  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=79.4

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD---KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .|.++|...  ...+.+..+...+.+..|+|||+.|+..+.+   ..|++||+.++........  .......+|+|||+
T Consensus       199 ~l~i~d~dG--~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDG--YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCC--CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCC
Confidence            566677653  2234455667788999999999998876532   3688999988765333211  13345789999999


Q ss_pred             EEEE-EeCCCc--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         91 FVIS-ASDEMN--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        91 ~l~~-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      .|+. .+.++.  |+++|+.+++... +..+..        ....++|+|||++|+..+
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~--------~~~~p~wSpDG~~I~f~s  324 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRA--------IDTEPSWHPDGKSLIFTS  324 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC--------CccceEECCCCCEEEEEE
Confidence            8874 555664  7788887765432 322211        135788999999887443

>KOG1272|consensus

Probab=99.08  E-value=1.4e-10  Score=85.63  Aligned_cols=134  Identities=15%  Similarity=0.112  Sum_probs=106.2

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEE
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI   93 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~   93 (197)
                      .+++||-.  +..+..+.. ...|..+.|-|..-+|++++..|.+..-|+++|.++..+..+ .+.+..++-+|-.-.+-
T Consensus       192 y~yvYD~~--GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~NaVih  267 (545)
T KOG1272|consen  192 YVYVYDNN--GTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYNAVIH  267 (545)
T ss_pred             eEEEecCC--CcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCccceEE
Confidence            34555543  334444443 356788889898888899999999999999999998877443 46777788889887888


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecCcceEEeecchhh
Q psy18074         94 SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEH  159 (197)
Q Consensus        94 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~  159 (197)
                      +|...|+|.+|.....+++..+..|...        |.++++.++|+++|+ |-+..+.|||++...
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~--------V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGP--------VSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCC--------cceEEECCCCcEEeecccccceeEeeecccc
Confidence            9999999999999988888777777654        789999999999995 556799999998765

>KOG4547|consensus

Probab=99.07  E-value=8.9e-09  Score=78.19  Aligned_cols=153  Identities=12%  Similarity=0.110  Sum_probs=117.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeeccc---CCCCeEEEEE------CC--------------CCCEEEEEeCCCcEE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKD---MTSAVTSVDY------SP--------------TGREFVAGGYDKSLR   59 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~------sp--------------~~~~l~~~~~d~~v~   59 (197)
                      +.++|....||.+++||..+ ++....+..   -.+..++..|      +|              +...++-|...|.|.
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            46889999999999999876 333333322   1234445554      22              233567788999999


Q ss_pred             EEECCCCcccceee-cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc
Q psy18074         60 LYLAHQGHSRDIYH-TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ  138 (197)
Q Consensus        60 i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  138 (197)
                      +|++..|+....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.+..+......        +.+++.+||
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~--------~~sl~is~D  155 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL--------VSSLCISPD  155 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc--------cceEEEcCC
Confidence            99999999877764 678899999999999999999999999999999999888888776654        679999999


Q ss_pred             cceeeeecCcceEEeecchhhHHHHhH
Q psy18074        139 IRRIARHRQVPRHIYNAQAEHRAIRSK  165 (197)
Q Consensus       139 ~~~l~~~~~~~~~i~~~~~~~~~~~~~  165 (197)
                      |..+++++ ..+.+|+....+..+.+.
T Consensus       156 ~~~l~~as-~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  156 GKILLTAS-RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             CCEEEecc-ceEEEEEccCceEEEEec
Confidence            99998776 567788877665554443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.3e-08  Score=77.25  Aligned_cols=131  Identities=11%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             CccEEEEEcC-C--CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANE-D--FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||..|+..+. +  ..|++||+.. +.. ..+....+......|+|||+.|+. .+.++  .|+++|+.++......  .
T Consensus       228 DG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt--~  303 (448)
T PRK04792        228 DGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT--R  303 (448)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCC-CCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc--c
Confidence            6666665432 2  3588888875 332 223333344557899999998865 45555  4888898877654332  2


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +.......+|+|||++++..+. ++  .|+++|+.+++... +.....        .....+|+|||++|+..
T Consensus       304 ~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~--------~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        304 HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE--------QNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC--------CCcCeeECCCCCEEEEE
Confidence            3345677899999998875543 33  46677877666433 221111        12356899999998743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=1.7e-08  Score=77.34  Aligned_cols=131  Identities=16%  Similarity=0.192  Sum_probs=85.6

Q ss_pred             CccEEE-EEcCCC--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFT-AANEDF--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.|+ +.+.++  .|++||+.+  .....+..+........|+|+|+.|+..+.. +  .|+++++.++......  .
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~--~  319 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDG--KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT--F  319 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCC--CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--c
Confidence            565444 444444  588888875  2344454555555678999999988766543 3  6888888876643332  2


Q ss_pred             cccceeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEM---NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      +...+..++|+|+|++++.++.++   .|.+||+.++... .+.....         .....|+|+|++|+...
T Consensus       320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~---------~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGL---------DESPSFAPNGRMILYAT  383 (417)
T ss_pred             CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCC---------CCCceECCCCCEEEEEE
Confidence            235667889999999998777665   7889998875432 2221111         24568999999887543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.9e-08  Score=76.18  Aligned_cols=147  Identities=12%  Similarity=0.150  Sum_probs=83.7

Q ss_pred             CCccEEEEEc-CCC--cEEE--EEccCC--CCceeecccCCCCeEEEEECCCCCEEEEEe-CCCc--EEEEECCC-Cccc
Q psy18074          1 MEAFVFTAAN-EDF--NLYS--YDIRQL--NSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKS--LRLYLAHQ-GHSR   69 (197)
Q Consensus         1 ~~~~~l~~~~-~d~--~i~i--~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~--v~i~d~~~-~~~~   69 (197)
                      .||+.|+..+ .+|  .+++  |++...  +.+........+......|+|||+.|+..+ .+|.  |+++++.. +...
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence            3676665533 222  3444  665531  233333333334456789999999887655 4554  44445542 2222


Q ss_pred             ceeecccccceeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-e
Q psy18074         70 DIYHTKRMQHVTHTVWSLDNKFVISASDE---MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-H  145 (197)
Q Consensus        70 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~  145 (197)
                      ..+ ..+...+...+|+|||++|+..+.+   ..|.+||+.+++....... ..        .+..+.|+|||++|+. .
T Consensus       320 ~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~--------~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        320 RLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PE--------NKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CC--------CccceEECCCCCEEEEEE
Confidence            222 2223466789999999998865443   4689999988765433222 11        1357889999998873 2


Q ss_pred             c-C--cceEEeecch
Q psy18074        146 R-Q--VPRHIYNAQA  157 (197)
Q Consensus       146 ~-~--~~~~i~~~~~  157 (197)
                      . .  ..+.++++..
T Consensus       390 ~~~g~~~L~~vdl~~  404 (428)
T PRK01029        390 GNSNESELYLISLIT  404 (428)
T ss_pred             CCCCCceEEEEECCC
Confidence            2 2  2345555543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=2.3e-08  Score=74.75  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             CccEEEEEcCCC-cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDF-NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +++-++.|..|| .+-+||.+.  ..+..+...-+.|.++..+|+|..++.+.....+.+.|+.+|..... .....+-|
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-dkS~~~lI  446 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-DKSEYGLI  446 (668)
T ss_pred             CCcceEEeccCCceEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-ccccccee
Confidence            445678888888 799999985  44566667788999999999999999999999999999999875333 23444779


Q ss_pred             eEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         81 THTVWSLDNKFVISASDE----MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      +...|||+++++|-+--+    -.|+++|..+++.....+....         -.+.+|.||+++|.
T Consensus       447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---------DfsPaFD~d~ryLY  504 (668)
T COG4946         447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---------DFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc---------ccCcccCCCCcEEE
Confidence            999999999999865434    4599999998776554433222         25788999998775

>KOG4497|consensus

Probab=99.03  E-value=1.5e-08  Score=72.48  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .++.+...++.|.+|++.. ..-...+.....++.+++|||+|+.+ .+...+-.|.+|.+.+.......+..  ..+..
T Consensus        62 ~ilC~~yk~~~vqvwsl~Q-pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--~~~kg  138 (447)
T KOG4497|consen   62 HILCVAYKDPKVQVWSLVQ-PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--TNVKG  138 (447)
T ss_pred             eeeeeeeccceEEEEEeec-ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc--cCcee
Confidence            3566678889999999975 23344455567889999999999655 56778889999999876654443333  35688


Q ss_pred             EEEccCCCEEEEEe
Q psy18074         83 TVWSLDNKFVISAS   96 (197)
Q Consensus        83 v~~~~~~~~l~~~~   96 (197)
                      ++|+|||++.+..+
T Consensus       139 ~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen  139 YAFHPDGQFCAILS  152 (447)
T ss_pred             EEECCCCceeeeee
Confidence            89999999877543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.99  E-value=8.4e-08  Score=72.14  Aligned_cols=150  Identities=13%  Similarity=0.055  Sum_probs=96.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccceeecc-----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIYHTK-----   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~-----   75 (197)
                      ||+++++++.||.|.++|+.+ .+.+..+.. .....++++|+||+++++++ ..+.+.++|..+.+.+.....+     
T Consensus        47 Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~  124 (369)
T PF02239_consen   47 DGRYLYVANRDGTVSVIDLAT-GKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD  124 (369)
T ss_dssp             -SSEEEEEETTSEEEEEETTS-SSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred             CCCEEEEEcCCCeEEEEECCc-ccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc
Confidence            688888888999999999987 566777755 44568899999999998765 6889999999998877665332     


Q ss_pred             -cccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee--cCcceE
Q psy18074         76 -RMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH--RQVPRH  151 (197)
Q Consensus        76 -~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~~  151 (197)
                       ....+..+..+|....++ +.-+.+.|.+.|......+..-......       ......|+|+++++..+  ..+.+.
T Consensus       125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~-------~~~D~~~dpdgry~~va~~~sn~i~  197 (369)
T PF02239_consen  125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR-------FPHDGGFDPDGRYFLVAANGSNKIA  197 (369)
T ss_dssp             TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T-------TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred             ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc-------cccccccCcccceeeecccccceeE
Confidence             224677887888877554 5555688888887765443221111111       13678899999877543  334567


Q ss_pred             EeecchhhH
Q psy18074        152 IYNAQAEHR  160 (197)
Q Consensus       152 i~~~~~~~~  160 (197)
                      +++....+.
T Consensus       198 viD~~~~k~  206 (369)
T PF02239_consen  198 VIDTKTGKL  206 (369)
T ss_dssp             EEETTTTEE
T ss_pred             EEeeccceE
Confidence            777665543

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.6e-09  Score=54.21  Aligned_cols=38  Identities=21%  Similarity=0.471  Sum_probs=35.6

Q ss_pred             CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy18074         25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL   62 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d   62 (197)
                      +++..+.+|.+.|.+++|+|++..|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.96  E-value=5.2e-09  Score=74.72  Aligned_cols=167  Identities=11%  Similarity=0.108  Sum_probs=110.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|+++|+.+.- .+.+-|..+. +..+.+ ..-..|..+.|..+..+++++ ..++.|.+|++...+-...+..+ ..++
T Consensus        19 ~g~yiAs~~~y-rlviRd~~tl-q~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agl   94 (447)
T KOG4497|consen   19 CGNYIASLSRY-RLVIRDSETL-QLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGL   94 (447)
T ss_pred             CCCeeeeeeee-EEEEeccchh-hHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcc
Confidence            68889988754 6667776652 333333 224678889999888777664 57789999999987765555443 4778


Q ss_pred             eEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchh
Q psy18074         81 THTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~  158 (197)
                      .+++|||||+.++ +...+-.|.||.+.+........+...         +..++|+|||++.|..+.. .+..+.....
T Consensus        95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~---------~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN---------VKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC---------ceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            9999999998766 667799999999988765543333322         4788999999999865543 3333333322


Q ss_pred             hH---HHHhHhHhhhhhhhcCCCCCC
Q psy18074        159 HR---AIRSKQKRKESNKRTHSAPGT  181 (197)
Q Consensus       159 ~~---~~~~~~~~~~~~~~~~~~~~~  181 (197)
                      +.   ....+....+...+.+++.+.
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~  191 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGN  191 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCc
Confidence            22   222233334444555555544

>KOG0974|consensus

Probab=98.91  E-value=5.6e-08  Score=78.35  Aligned_cols=143  Identities=17%  Similarity=0.203  Sum_probs=101.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC----CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS----AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      +...++.++.++.+.+||... ......+.....    ...-+-.+++.-++++|+.-+.|.+|..... .......+|.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~-~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~GHe  175 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKN-SSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKGHE  175 (967)
T ss_pred             hcceEEEEEcCceEEEEeccc-CceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecccC
Confidence            456677888888999999875 233333322111    1222334666668889999999999998732 2223447899


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-eeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-YVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      +.+.++.|+-||+++++.++|..+++|++.+.+... ..-+|        ...+..++|+|. ..+..+.+..+.+|..
T Consensus       176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH--------saRvw~~~~~~n-~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH--------SARVWACCFLPN-RIITVGEDCTCRVWGV  245 (967)
T ss_pred             CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc--------cceeEEEEeccc-eeEEeccceEEEEEec
Confidence            999999999999999999999999999999877654 22233        344788899998 4444556668899943

>KOG0280|consensus

Probab=98.91  E-value=1.5e-08  Score=71.28  Aligned_cols=105  Identities=19%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCce-eecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCC-Ccccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPL-NVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQ-GHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~   77 (197)
                      .+++++.+|+.|+.+..||++-.+..+ .....|...|.++.-+| .+..+++|++|..+++||.++ ++++...  .-.
T Consensus       176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~  253 (339)
T KOG0280|consen  176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVG  253 (339)
T ss_pred             CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--ccc
Confidence            367899999999999999999434333 33567888999998887 577999999999999999995 4444433  333


Q ss_pred             cceeEEEEccCC--CEEEEEeCCCcEEEEEcCC
Q psy18074         78 QHVTHTVWSLDN--KFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        78 ~~v~~v~~~~~~--~~l~~~~~dg~i~vwd~~~  108 (197)
                      +.|..+.++|.-  +.++++..+| .+|-+...
T Consensus       254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             cceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            899999999964  3444555454 56666654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1.9e-07  Score=71.73  Aligned_cols=136  Identities=11%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CC----cEEEEECCCC---cccceeecccccceeEEE
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DK----SLRLYLAHQG---HSRDIYHTKRMQHVTHTV   84 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~----~v~i~d~~~~---~~~~~~~~~~~~~v~~v~   84 (197)
                      ..|++.++.. +. ...+....+......|||||+.|+..+. +|    .+.+|++..+   ...... ..+.......+
T Consensus       211 ~~I~~~~l~~-g~-~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~  287 (428)
T PRK01029        211 PKIFLGSLEN-PA-GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGTQGNPS  287 (428)
T ss_pred             ceEEEEECCC-CC-ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-cCCCCCcCCeE
Confidence            3577778774 33 2333344556667899999998886542 22    3344676653   222222 22223456789


Q ss_pred             EccCCCEEEEEe-CCCcEEEE--EcCC-CceeeeeccccccccccccccceecccCcccceeeeecC----cceEEeecc
Q psy18074         85 WSLDNKFVISAS-DEMNLRVW--KAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ----VPRHIYNAQ  156 (197)
Q Consensus        85 ~~~~~~~l~~~~-~dg~i~vw--d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~~i~~~~  156 (197)
                      |+|||+.|+..+ .+|...+|  ++.. +.....+.....        .+..+.|||||++|+....    ..+.+|++.
T Consensus       288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--------~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--------NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--------CccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            999999888654 45654555  4432 222222322211        2457889999999984332    246777765


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ..+
T Consensus       360 ~g~  362 (428)
T PRK01029        360 TGR  362 (428)
T ss_pred             CCC
Confidence            443

>KOG2066|consensus

Probab=98.89  E-value=1.1e-07  Score=75.14  Aligned_cols=146  Identities=14%  Similarity=0.216  Sum_probs=102.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEECCC-Ccccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT-----GREFVAGGYDKSLRLYLAHQ-GHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~   75 (197)
                      +|.++++++.||+|.+..+.+. +....+ ....++.+++++|+     ..++++|+..| +.++.-.- |.........
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~-~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTD-DEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCC-ccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence            7999999999999999888753 323333 44678999999997     45789999888 77776542 1111112234


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      ..++|.++.|.  |+++|-++++| |+|||+.+++.+..+......  ...+.....+.|.++. .++.|..+.+.|...
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~--~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I  232 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS--VRPELFPPHLHWQDED-RLVIGWGDSVKICSI  232 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC--CCcccCCCceEecCCC-eEEEecCCeEEEEEE
Confidence            45899999995  77898888777 899999998887766554421  1112224567787764 455667778888887


Q ss_pred             c
Q psy18074        156 Q  156 (197)
Q Consensus       156 ~  156 (197)
                      +
T Consensus       233 ~  233 (846)
T KOG2066|consen  233 K  233 (846)
T ss_pred             e
Confidence            6

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=3e-07  Score=68.97  Aligned_cols=143  Identities=17%  Similarity=0.121  Sum_probs=107.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC-cEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK-SLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.+++..+. |++.+.+... +. ...+ ++.+.|.-..+..++..++.|..|| .+-+||..+++.....  +.-+.|
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~-~~-~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I  404 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWD-GY-SIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNI  404 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCC-Ce-eEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccce
Confidence            5677777764 6788877653 22 2222 5677799888988888899999999 9999999998865543  334789


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-----CcceEEeec
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-----QVPRHIYNA  155 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~~~~i~~~  155 (197)
                      .++..+|+|++++.+.....+.+.|+.+++....-.....        .|..+.|||++++||-+-     ...+.+|++
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~--------lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG--------LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc--------eeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            9999999999999999999999999999886543332222        278999999999999332     235677777


Q ss_pred             chh
Q psy18074        156 QAE  158 (197)
Q Consensus       156 ~~~  158 (197)
                      ...
T Consensus       477 ~~~  479 (668)
T COG4946         477 DGG  479 (668)
T ss_pred             CCC
Confidence            553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=7.4e-09  Score=51.71  Aligned_cols=32  Identities=28%  Similarity=0.620  Sum_probs=30.6

Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEE
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWK  105 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd  105 (197)
                      .+|...|.+++|+|++++|++++.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1240|consensus

Probab=98.87  E-value=3.7e-08  Score=80.88  Aligned_cols=139  Identities=14%  Similarity=0.134  Sum_probs=95.5

Q ss_pred             EEccCCCCceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCc-------ccceeecccccceeEEEEccCC
Q psy18074         18 YDIRQLNSPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGH-------SRDIYHTKRMQHVTHTVWSLDN   89 (197)
Q Consensus        18 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~~~   89 (197)
                      |+++  +..+..+..|...+..++.++. +.+|++|+.||+|++|+++.-.       ...++ ..-.+.+..+.+.+.+
T Consensus      1034 W~p~--G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR--GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCcc--ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCC
Confidence            5555  5677778888888888888775 4899999999999999997421       11122 1123678999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc--eee-----eec--------------ccccc-cc------------------------
Q psy18074         90 KFVISASDEMNLRVWKAHASE--KLG-----YVN--------------NKQRQ-AL------------------------  123 (197)
Q Consensus        90 ~~l~~~~~dg~i~vwd~~~~~--~~~-----~~~--------------~~~~~-~~------------------------  123 (197)
                      ..+|.++.||.|.+.++....  ...     ...              .+... .+                        
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            999999999999999886411  100     000              00000 00                        


Q ss_pred             -ccccccceecccCcccceeeeecCc-ceEEeecchhh
Q psy18074        124 -DYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus       124 -~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~  159 (197)
                       ......|++++.+|.+++++.|... ...+|+++-..
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence             0112268899999999999977654 66899987543

>KOG3914|consensus

Probab=98.83  E-value=1.5e-07  Score=68.75  Aligned_cols=150  Identities=12%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC---ceeecccCCCCeEEEEECCCCCEEEEEeCCC---cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS---PLNVHKDMTSAVTSVDYSPTGREFVAGGYDK---SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~   75 (197)
                      ++.++|++..+....+++.+...+   +...... ...-+++.+-.+......+...|   .+.+|....+.+...  .+
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~--lG  149 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI--LG  149 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh--hh
Confidence            577888888888877777764221   2222211 22334444444444444444444   444555444554444  58


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      |...+..|+|+||+++++++..|..|++-....--.+..+-.+       |...|..++.-++-.++.++.|..+.+|+.
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-------H~eFVS~isl~~~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-------HKEFVSTISLTDNYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-------cHhheeeeeeccCceeeecCCCCcEEEEec
Confidence            8899999999999999999999999999877654444433322       233477888777655555667779999999


Q ss_pred             chhhHH
Q psy18074        156 QAEHRA  161 (197)
Q Consensus       156 ~~~~~~  161 (197)
                      ...+.-
T Consensus       223 ~sgk~L  228 (390)
T KOG3914|consen  223 TSGKLL  228 (390)
T ss_pred             ccCCcc
Confidence            887654

>KOG4714|consensus

Probab=98.82  E-value=2.3e-08  Score=69.30  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      +.+++++|+.||.+.+||.+....+...+..|+.+++-+-|+| ++..|++++.||.+.-||..+
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            5678999999999999999987788888999999999999999 568999999999999999874

>KOG2695|consensus

Probab=98.79  E-value=5.3e-08  Score=70.01  Aligned_cols=116  Identities=13%  Similarity=0.127  Sum_probs=85.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCC----CCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcc---cceeec
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL----NSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHS---RDIYHT   74 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~   74 (197)
                      ++++..|+.+|.|..+|++..    +.+...+ -|.+.|+++..-. ++++|.+.+.+|.|.+||++.-++   +..+ .
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-e  341 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY-E  341 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee-e
Confidence            678999999999999999853    2333333 4788888887655 688999999999999999986555   3333 4


Q ss_pred             ccccceeE--EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         75 KRMQHVTH--TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        75 ~~~~~v~~--v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      +|.+.-..  +-.++....++++++|...++|.+..|..+.+++....
T Consensus       342 GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  342 GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            55332222  22345667788899999999999999998887765443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=9.9e-07  Score=67.58  Aligned_cols=127  Identities=10%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             CccEEE-EEcC--CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFT-AANE--DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~-~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||..++ +.+.  +..|+++|+.. +. ...+..+.+......|+|||+.|+..+.. +  .|++.|+.++........+
T Consensus       243 DG~~la~~~~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g  320 (419)
T PRK04043        243 DGSKLLLTMAPKGQPDIYLYDTNT-KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG  320 (419)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCC-Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence            554443 3333  35678888764 33 44454444444566899999988776532 2  7888899887764443222


Q ss_pred             cccceeEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDE---------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      .    ....|+|+|++++.....         ..|.+.|+.++... .+.....         .....|+|||+.|+-
T Consensus       321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~---------~~~p~~SPDG~~I~f  384 (419)
T PRK04043        321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGV---------NQFPRFSSDGGSIMF  384 (419)
T ss_pred             C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCC---------cCCeEECCCCCEEEE
Confidence            1    124899999998855433         36788888777643 3332211         246889999998873

>KOG2041|consensus

Probab=98.77  E-value=1.2e-07  Score=74.45  Aligned_cols=147  Identities=11%  Similarity=0.144  Sum_probs=109.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--------------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--------------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~   67 (197)
                      +..++++|+.||.+++..+.+..              ..-+.+.+|.+.|.-+.|+.+.+.|-++..+|.|.+|-+-.|.
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS  104 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence            56789999999999998765311              1123578999999999999999999999999999999998876


Q ss_pred             cccee-ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-eeccccccccccccccceecccCcccceeeee
Q psy18074         68 SRDIY-HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-YVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        68 ~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      -...+ .....+.|.+++|+.||+.+...-.||.|.|=.+...+.-. .+.+..          ...+.|++|.+.+..+
T Consensus       105 W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~----------l~hv~ws~D~~~~Lf~  174 (1189)
T KOG2041|consen  105 WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL----------LAHVLWSEDLEQALFK  174 (1189)
T ss_pred             HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe----------ccceeecccHHHHHhh
Confidence            43333 23344779999999999999999999999888776333211 122211          2578899998877654


Q ss_pred             c-CcceEEeecchh
Q psy18074        146 R-QVPRHIYNAQAE  158 (197)
Q Consensus       146 ~-~~~~~i~~~~~~  158 (197)
                      - ++..++|+....
T Consensus       175 ~ange~hlydnqgn  188 (1189)
T KOG2041|consen  175 KANGETHLYDNQGN  188 (1189)
T ss_pred             hcCCcEEEeccccc
Confidence            4 457788886544

>KOG2066|consensus

Probab=98.77  E-value=1.4e-07  Score=74.46  Aligned_cols=142  Identities=14%  Similarity=0.086  Sum_probs=101.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      +..|+-|+.+|.|++++..  +.+ .....|...      ..+|.++++|+.||.|.|..+-+......+...  .++.+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~--~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~--rpiks  117 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ--GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK--RPIKS  117 (846)
T ss_pred             cceeeeccccceEEEEecC--Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC--Cccee
Confidence            5688999999999999987  444 333344333      568999999999999999998887766555333  68999


Q ss_pred             EEEccC-----CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         83 TVWSLD-----NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        83 v~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      ++++|+     .+.+++|+..| +.++.-.--......      .+.-.+.+|.+++|.  |.+||+..+..+.+|+...
T Consensus       118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~  188 (846)
T KOG2066|consen  118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT  188 (846)
T ss_pred             EEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc
Confidence            999998     56788999888 766643321111111      122223457888884  7789999999999999987


Q ss_pred             hhHHHHh
Q psy18074        158 EHRAIRS  164 (197)
Q Consensus       158 ~~~~~~~  164 (197)
                      .++....
T Consensus       189 ~~~l~~i  195 (846)
T KOG2066|consen  189 RQRLTNI  195 (846)
T ss_pred             cceeecc
Confidence            7665433

>KOG1354|consensus

Probab=98.76  E-value=1.6e-07  Score=67.64  Aligned_cols=153  Identities=12%  Similarity=0.238  Sum_probs=101.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC----ceeecccCC------------CCeEEEEECCCC--CEEEEEeCCCcEEEEEC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS----PLNVHKDMT------------SAVTSVDYSPTG--REFVAGGYDKSLRLYLA   63 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~------------~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~   63 (197)
                      .|.+|++|..+|.|.+|.-.....    ....++.|+            ..|..+.|.+++  ..++..+.|.++++|-+
T Consensus        36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi  115 (433)
T KOG1354|consen   36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI  115 (433)
T ss_pred             ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence            589999999999999997653222    122233332            358889998865  46778889999999987


Q ss_pred             CCCcc-----------------------------------cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         64 HQGHS-----------------------------------RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        64 ~~~~~-----------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      .....                                   .+.+...|...+++++++.|+..++++. |=.|.+|++.-
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei  194 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEI  194 (433)
T ss_pred             eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccc
Confidence            63111                                   1112345788899999999999887754 77899999863


Q ss_pred             C-ceee--eeccccccccccccccceecccCcc--cceeeeecCcceEEeecchh
Q psy18074        109 S-EKLG--YVNNKQRQALDYSESLKQKYAHHPQ--IRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       109 ~-~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~i~~~~~~  158 (197)
                      - +...  -+.+.....+   ...|++-.|||.  .-++.+++.+.+.+.++++.
T Consensus       195 ~d~sFnIVDIKP~nmEeL---teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  195 IDQSFNIVDIKPANMEEL---TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             cCCceeEEEccccCHHHH---HHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            2 2222  2222222111   123678889993  34445888889999998744

>KOG2314|consensus

Probab=98.76  E-value=1e-07  Score=72.53  Aligned_cols=133  Identities=15%  Similarity=0.142  Sum_probs=95.3

Q ss_pred             EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEE
Q psy18074         15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVIS   94 (197)
Q Consensus        15 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~   94 (197)
                      ...|+... ..+...-......-+.+.|||.|++|++-...| |.+|--.+-.....+  .| ..|..+.|||..+||++
T Consensus       192 svfwN~~~-n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~H-p~Vq~idfSP~EkYLVT  266 (698)
T KOG2314|consen  192 SVFWNSKF-NEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YH-PGVQFIDFSPNEKYLVT  266 (698)
T ss_pred             EEEccccC-CchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cC-CCceeeecCCccceEEE
Confidence            34466543 233333333345678899999999999988777 889986654444444  23 57999999999999998


Q ss_pred             EeC-----------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         95 ASD-----------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        95 ~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      -+.           ...+.|||+++|.....+.......+     ...-+.||.|++++|.-..+.+.||....
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~-----~WP~frWS~DdKy~Arm~~~sisIyEtps  335 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL-----KWPIFRWSHDDKYFARMTGNSISIYETPS  335 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc-----ccceEEeccCCceeEEeccceEEEEecCc
Confidence            642           24699999999998877765322211     13456899999999988889999998865

>KOG1275|consensus

Probab=98.75  E-value=1.1e-07  Score=76.22  Aligned_cols=141  Identities=9%  Similarity=0.070  Sum_probs=104.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEECCCCccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---------DKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~i~d~~~~~~~~~~   72 (197)
                      ++.++.+|...|+|.+-|+++ .+.+..+..|.+.+.++..  .|+.|++++.         |..|.+||++.-+.+..+
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             cCcEEEeecccceEEeecCCc-Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            578899999999999999997 6889999999999987766  7899998763         678999999987765554


Q ss_pred             ecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcC---CCc-eeeeeccccccccccccccceecccCcccceeeeecC
Q psy18074         73 HTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAH---ASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~---~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      ...  .....+.|+|. ...++..+..|...+-|..   +.. .+..+....        +.+..+++|++|+.+|.+..
T Consensus       263 ~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~--------s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  263 QFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG--------SGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             ccc--cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC--------CcceeEEecCCCceEEEecc
Confidence            221  33467889996 4556777888999888833   221 122222222        22678999999999997765


Q ss_pred             -cceEEeec
Q psy18074        148 -VPRHIYNA  155 (197)
Q Consensus       148 -~~~~i~~~  155 (197)
                       +.+.+|.-
T Consensus       333 ~g~v~~wa~  341 (1118)
T KOG1275|consen  333 EGHVNLWAD  341 (1118)
T ss_pred             cCcEeeecC
Confidence             47789973

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.72  E-value=1.9e-06  Score=73.06  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=99.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc---------------CCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD---------------MTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~   65 (197)
                      ++.++++...++.|++||.... . +..+.+               .......++++|++..|+ +-+.++.|++||+.+
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g-~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDG-V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCC-e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            4667788888889999998642 1 211111               112456799999998554 556678999999987


Q ss_pred             Cccccee-----------ecc---------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-----
Q psy18074         66 GHSRDIY-----------HTK---------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-----  120 (197)
Q Consensus        66 ~~~~~~~-----------~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----  120 (197)
                      +......           ..+         .-.....++++++|..+++-..++.|++||..++...........     
T Consensus       772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG  851 (1057)
T PLN02919        772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG  851 (1057)
T ss_pred             CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence            5432110           000         012356899999999888888899999999987665432211100     


Q ss_pred             cccccccccceecccCcccceeeeecC-cceEEeecchhh
Q psy18074        121 QALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus       121 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~  159 (197)
                      ......-.....++++++|+.+++... +.+.+|++...+
T Consensus       852 ~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        852 KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            001111224578899999987776554 478899986654

>KOG1064|consensus

Probab=98.72  E-value=4.3e-08  Score=83.34  Aligned_cols=139  Identities=9%  Similarity=0.068  Sum_probs=106.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE---eCCCcEEEEECCCCcccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG---GYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      .+|+-+..+..||.+.+|...  ..+....+-|.....++.|-.  +.++++   +.++.+.+||..-.......+..|.
T Consensus      2261 ~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             ccCCceeeeccCCceeecccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            368888889999999999987  466777778888888888853  666664   4678999999876555555557888


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      +.++++++-|..+.+++|+.+|.|.+||+++.+.++++..                 +.....++.....+.+.||.+..
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------------~~~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LDTREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------hhhhheeeccCcccceEEEEccc
Confidence            9999999999999999999999999999998777665542                 22222333345567899999876


Q ss_pred             hhH
Q psy18074        158 EHR  160 (197)
Q Consensus       158 ~~~  160 (197)
                      ..-
T Consensus      2400 ~~l 2402 (2439)
T KOG1064|consen 2400 FGL 2402 (2439)
T ss_pred             cch
Confidence            643

>KOG4532|consensus

Probab=98.71  E-value=2.5e-06  Score=59.76  Aligned_cols=148  Identities=7%  Similarity=-0.036  Sum_probs=94.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCc-eeec-ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ec
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSP-LNVH-KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HT   74 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~   74 (197)
                      .|+.++++.+....|..|.+...+.. +... ......-.+..|+.....+|++..||.+.|||++....+...    ..
T Consensus       168 nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp  247 (344)
T KOG4532|consen  168 NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP  247 (344)
T ss_pred             CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC
Confidence            37888999999999999999753332 2212 222334467789998999999999999999999864432221    23


Q ss_pred             ccccceeEEEEccCCC--EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074         75 KRMQHVTHTVWSLDNK--FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                      .|.+.+..+.|++.|.  +|+..-.-+.+.+.|++++.....+.............-+..-.|+.++..+-.....
T Consensus       248 ~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  248 HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            4678899999998664  3445555678999999988766554433321111111123445555555444433333

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.70  E-value=5.3e-06  Score=62.18  Aligned_cols=153  Identities=12%  Similarity=0.098  Sum_probs=93.0

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCCceee--cc-----------cCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCC
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNSPLNV--HK-----------DMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~--~~-----------~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~   66 (197)
                      ++.+++++. .+|.|.+|++...+.....  ..           .......++.++|+++++++.. ....|++|++...
T Consensus        97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~  176 (345)
T PF10282_consen   97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD  176 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred             CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence            456666654 5899999999763332221  11           1124578999999999887754 3447999998765


Q ss_pred             c--ccc--eeecccccceeEEEEccCCCEEEE-EeCCCcEEEEEcC--CCce--eeeeccccccccccccccceecccCc
Q psy18074         67 H--SRD--IYHTKRMQHVTHTVWSLDNKFVIS-ASDEMNLRVWKAH--ASEK--LGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        67 ~--~~~--~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      .  +..  .+........+.++|+|++++++. ...++.|.++++.  ++..  +......... .. .......++++|
T Consensus       177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~i~isp  254 (345)
T PF10282_consen  177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-FT-GENAPAEIAISP  254 (345)
T ss_dssp             S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-SC-SSSSEEEEEE-T
T ss_pred             CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-cc-ccCCceeEEEec
Confidence            4  311  222333467899999999998864 4568889999988  3322  1111111100 00 011356889999


Q ss_pred             ccceeeeec--CcceEEeecc
Q psy18074        138 QIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus       138 ~~~~l~~~~--~~~~~i~~~~  156 (197)
                      ||++|..+.  .+.+.+|++.
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEEC
T ss_pred             CCCEEEEEeccCCEEEEEEEe
Confidence            999887543  3478888883

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714|consensus

Probab=98.70  E-value=3.6e-08  Score=68.32  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEcc-CCCE
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL-DNKF   91 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~   91 (197)
                      ..++|+++........... ...|.+++-+|..+ .+++|+.||.+-+||.+.......+...|...++.+-|+| ++..
T Consensus       160 ~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            4556666543222222222 34499999999655 5567889999999999998777666778889999999999 5778


Q ss_pred             EEEEeCCCcEEEEEcCC
Q psy18074         92 VISASDEMNLRVWKAHA  108 (197)
Q Consensus        92 l~~~~~dg~i~vwd~~~  108 (197)
                      |++++.||.+--||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999874

>KOG4190|consensus

Probab=98.69  E-value=1.7e-07  Score=71.61  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=105.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~   74 (197)
                      +.+-|++++.|.+|++|.++..+      .+..+++.|..+|.++.|-.+.+.++  +.||.+.+||.--++.+..+ ..
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcC
Confidence            34668899999999999987432      35667889999999999987776665  45899999999888776643 22


Q ss_pred             ccccceeEEEEccC-CC-EEEE-EeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cce
Q psy18074         75 KRMQHVTHTVWSLD-NK-FVIS-ASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPR  150 (197)
Q Consensus        75 ~~~~~v~~v~~~~~-~~-~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~  150 (197)
                      ...+.+..+-.-++ .+ .+.. ++...+|+++|.+.++-...+......   +.+..+.+++..+.|+++|.+-. +.+
T Consensus       824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~---~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP---GPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC---CCchheeEEEeccCcchhhHHhcCCcE
Confidence            22233333333343 33 3333 377899999999987765555433211   11234689999999999996654 467


Q ss_pred             EEeecchhhH
Q psy18074        151 HIYNAQAEHR  160 (197)
Q Consensus       151 ~i~~~~~~~~  160 (197)
                      .+.+++..+.
T Consensus       901 ~~LDaR~G~v  910 (1034)
T KOG4190|consen  901 AILDARNGKV  910 (1034)
T ss_pred             EEEecCCCce
Confidence            8888776653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=5.3e-06  Score=63.64  Aligned_cols=120  Identities=12%  Similarity=0.043  Sum_probs=75.5

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCE-EEEEeC---CCcEEEEECCCCcccceeecccccceeEEEEccC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGRE-FVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD   88 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~   88 (197)
                      ..|.+-|..  +.-.+.+... +......|+|+|+. ++..+.   ...|+++|+.+++......  ..+.....+|+||
T Consensus       169 ~~l~~~d~d--g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYT--LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCC--CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCC
Confidence            355565554  3223333333 37889999999985 554433   3579999998887655432  2245667889999


Q ss_pred             CCEEEE-EeCC--CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         89 NKFVIS-ASDE--MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        89 ~~~l~~-~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      |+.++. .+.+  ..|.++|+.++... .+......        .....|+|||+.|+-.+
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~--------d~~p~~SPDG~~I~F~S  295 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGI--------DVNGNFVEDDKRIVFVS  295 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCc--------cCccEECCCCCEEEEEE
Confidence            988764 3333  46888888776543 33322211        23567999999888443

>KOG2695|consensus

Probab=98.65  E-value=1.6e-07  Score=67.67  Aligned_cols=143  Identities=6%  Similarity=-0.006  Sum_probs=99.3

Q ss_pred             EEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-----cccceeeccccccee
Q psy18074          7 TAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-----HSRDIYHTKRMQHVT   81 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~~~~~v~   81 (197)
                      ++.+.+..|-+-|..+  ...+.+. ..+.|.++.|...+..++.|..+|.|..+|++.+     .+...  .-|.+.|+
T Consensus       228 fs~G~sqqv~L~nvet--g~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVET--GHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDSSVT  302 (425)
T ss_pred             ecccccceeEEEEeec--ccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCcchh
Confidence            3344566677777775  2334443 5678889999888899999999999999999864     22222  24668899


Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEEcCCCce---eeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecc
Q psy18074         82 HTVWSL-DNKFVISASDEMNLRVWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~  156 (197)
                      ++..-. ++++|.+++.+|.|.+||++.-++   +..+.+|....-      ...+-..+....|+++.++ --.||.+.
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a------~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA------YLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc------ccccccccccceEEEccCeeEEEEEecc
Confidence            988766 789999999999999999987666   667776654211      1233345544455544444 56999987


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ..+-
T Consensus       377 ~ghL  380 (425)
T KOG2695|consen  377 SGHL  380 (425)
T ss_pred             cCce
Confidence            5544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.63  E-value=5.4e-06  Score=61.64  Aligned_cols=102  Identities=11%  Similarity=0.003  Sum_probs=75.2

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcccceeeccc------
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY----------DKSLRLYLAHQGHSRDIYHTKR------   76 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~~~~~------   76 (197)
                      ++|.+.|..+ .+.+..+.....+- .+ +|||++.++.+..          +..|.+||..+.+....+..+.      
T Consensus        27 ~~v~ViD~~~-~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEA-GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCC-CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            8899999987 45566665433333 34 9999998877654          7899999999998776653321      


Q ss_pred             ccceeEEEEccCCCEEEEEe-C-CCcEEEEEcCCCceeeeecc
Q psy18074         77 MQHVTHTVWSLDNKFVISAS-D-EMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~  117 (197)
                      .......+++|||++++... . +..|.+.|+.+++.+..+..
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            12344788999999998665 3 78899999999888775543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1e-05  Score=58.72  Aligned_cols=156  Identities=14%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCCcee--ecccCCCC----------eEEEEECCCCCEEEEEe-CCCcEEEEECCCCc
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNSPLN--VHKDMTSA----------VTSVDYSPTGREFVAGG-YDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~--~~~~~~~~----------v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~   67 (197)
                      +|.+++++. ..|.|.++-++..+.+..  ....|.+.          +-...+.|++++|++.. ..-.|.+|++..|.
T Consensus        99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706          99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence            565665554 457799998875343221  22345554          88899999999988764 23359999999876


Q ss_pred             cccee--ecccccceeEEEEccCCCEEEE-EeCCCcEEEEEcCCC-ceeeeeccccc--cccccccccceecccCcccce
Q psy18074         68 SRDIY--HTKRMQHVTHTVWSLDNKFVIS-ASDEMNLRVWKAHAS-EKLGYVNNKQR--QALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        68 ~~~~~--~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~vwd~~~~-~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      +....  ........+.+.|+|++++... .-.+++|.+|..... ..+..++....  ..+ ....+...+..++||++
T Consensus       179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-~g~~~~aaIhis~dGrF  257 (346)
T COG2706         179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF-TGTNWAAAIHISPDGRF  257 (346)
T ss_pred             cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc-CCCCceeEEEECCCCCE
Confidence            54332  1233367899999999999874 456999999998763 22333222111  111 11234567889999999


Q ss_pred             eeeecCc--ceEEeecchh
Q psy18074        142 IARHRQV--PRHIYNAQAE  158 (197)
Q Consensus       142 l~~~~~~--~~~i~~~~~~  158 (197)
                      |..+...  .+.+|.....
T Consensus       258 LYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         258 LYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEEecCCCCeEEEEEEcCC
Confidence            9865543  5666665544

>KOG4532|consensus

Probab=98.61  E-value=4.6e-06  Score=58.45  Aligned_cols=153  Identities=8%  Similarity=-0.027  Sum_probs=96.8

Q ss_pred             EEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-cc-cceeecccccceeEEEE
Q psy18074          8 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-HS-RDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         8 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-~~-~~~~~~~~~~~v~~v~~   85 (197)
                      .++.|.+++++++..... ...+.-..-.+.++.++++++++++.+....|..|.+... +. +......-...-.+.+|
T Consensus       133 i~sndht~k~~~~~~~s~-~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~  211 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSN-KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF  211 (344)
T ss_pred             eccCCcceeEEEEecCcc-cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence            445667777777653111 1111111123788999999999999999999999998653 22 22222222345578899


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc--ceeeeecC-cceEEeecchhhHHH
Q psy18074         86 SLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI--RRIARHRQ-VPRHIYNAQAEHRAI  162 (197)
Q Consensus        86 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~-~~~~i~~~~~~~~~~  162 (197)
                      +.....+|++..||.+.|||++..............   .+...+..+.|++-|  .+|....+ ....+.+++..++.+
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp---~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP---HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhhhcccCC---CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            999999999999999999999975433222211111   123446788888744  33333343 467888888776654


Q ss_pred             Hh
Q psy18074        163 RS  164 (197)
Q Consensus       163 ~~  164 (197)
                      ..
T Consensus       289 ~I  290 (344)
T KOG4532|consen  289 VI  290 (344)
T ss_pred             EE
Confidence            43

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=7.4e-07  Score=68.44  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=63.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         32 DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        32 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      ...+.+.+++++|+...++.|+.||.|.+||...+.....   ...-.++.++|+|+|..+++|+..|.+.+||..-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            4567899999999999999999999999999987643322   22245789999999999999999999999998643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=3.3e-06  Score=64.97  Aligned_cols=114  Identities=8%  Similarity=0.048  Sum_probs=76.1

Q ss_pred             CCeEEEEECC-CCCEEEEE----eCCC----cEEEEECCCCcccce--eecccccceeEEEEccCCCEEEEEeCCCcEEE
Q psy18074         35 SAVTSVDYSP-TGREFVAG----GYDK----SLRLYLAHQGHSRDI--YHTKRMQHVTHTVWSLDNKFVISASDEMNLRV  103 (197)
Q Consensus        35 ~~v~~~~~sp-~~~~l~~~----~~d~----~v~i~d~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~v  103 (197)
                      ....++.||- +...+.+.    +.+|    ...+|+...++....  ........|.+.+++|+...++.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3446667766 33444442    3344    334566655543322  23345578999999999999999999999999


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      ||...+.....-  ..  .      .++.++|||+|..++.+++ +.+.+||..-.
T Consensus       286 yD~~~~~t~~~k--a~--~------~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRGVTLLAK--AE--F------IPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCCeeeeee--ec--c------cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            998765433221  11  1      1478999999999987766 58899998633

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.48  E-value=4.8e-05  Score=53.83  Aligned_cols=163  Identities=13%  Similarity=0.167  Sum_probs=102.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeeccc-------CCCCeEEEEECCC------CCEEEEEeCCCcEEEEECCCCc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKD-------MTSAVTSVDYSPT------GREFVAGGYDKSLRLYLAHQGH   67 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~sp~------~~~l~~~~~d~~v~i~d~~~~~   67 (197)
                      .|+.+||.+...|+|++||+..  ..+..+..       ....|.++.|-+.      ...|++.+..|.++-|-+..+.
T Consensus        53 pD~tlLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt  130 (282)
T PF15492_consen   53 PDCTLLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGT  130 (282)
T ss_pred             CCCcEEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEccc
Confidence            4788999999999999999873  22222221       1245666666432      2256777888888877764321


Q ss_pred             -----ccce--eecccccceeEEEEccCCCEEEEEeCC-----------CcEEEEEcCCCceeeeeccccc---------
Q psy18074         68 -----SRDI--YHTKRMQHVTHTVWSLDNKFVISASDE-----------MNLRVWKAHASEKLGYVNNKQR---------  120 (197)
Q Consensus        68 -----~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~---------  120 (197)
                           ....  +...+...|.++.|+|..++|+.|+..           .-+.-|.+-++.+-........         
T Consensus       131 ~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~  210 (282)
T PF15492_consen  131 NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR  210 (282)
T ss_pred             CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence                 1111  122335689999999998988766431           1267787765544332211100         


Q ss_pred             ----ccc--------ccccccceecccCcccceeee-ecCcceEEeecchhhHHHHhH
Q psy18074        121 ----QAL--------DYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQAEHRAIRSK  165 (197)
Q Consensus       121 ----~~~--------~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~  165 (197)
                          ..+        .-..+.|..+..||||+.||+ +..+.+.+|.+...+......
T Consensus       211 ~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  211 RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                000        112557889999999999985 456689999998776655443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.47  E-value=9.5e-06  Score=67.85  Aligned_cols=171  Identities=11%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             CccEEEEEcCCCcEEEE----EccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-------------
Q psy18074          2 EAFVFTAANEDFNLYSY----DIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH-------------   64 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~----d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~-------------   64 (197)
                      |...++.+..+|.|.++    +..  ...+...-.-...|.+++||||+..|+..+.++++.+....             
T Consensus        86 d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   86 DSESLCIALASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDD  163 (928)
T ss_pred             CCCcEEEEECCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence            44566777778888888    443  23344444456799999999999999999888888776443             


Q ss_pred             ----------CCcccceee--------------------cc---cccceeEEEEccCCCEEEEEeC------CCcEEEEE
Q psy18074         65 ----------QGHSRDIYH--------------------TK---RMQHVTHTVWSLDNKFVISASD------EMNLRVWK  105 (197)
Q Consensus        65 ----------~~~~~~~~~--------------------~~---~~~~v~~v~~~~~~~~l~~~~~------dg~i~vwd  105 (197)
                                -|+....|+                    .+   ....-..++|-.||.|+|+.+.      ...++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                      010000000                    00   1224567899999999997653      25799998


Q ss_pred             cCCCceeeeeccccccccccccccceecccCcccceeeeecC----cceEEeecchhhHHHHh---HhHhhhhhhhcCCC
Q psy18074        106 AHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ----VPRHIYNAQAEHRAIRS---KQKRKESNKRTHSA  178 (197)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~  178 (197)
                      -. |....+-....  .+      -.+++|-|.|++||+...    ..+.+|.....+.....   ...........|+.
T Consensus       244 Re-G~L~stSE~v~--gL------e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  244 RE-GELQSTSEPVD--GL------EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS  314 (928)
T ss_pred             CC-ceEEeccccCC--Cc------cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence            65 54333322111  11      258999999999996543    35566665433332211   12233345566666


Q ss_pred             CCCCC
Q psy18074        179 PGTVP  183 (197)
Q Consensus       179 ~~~~~  183 (197)
                      .+.+.
T Consensus       315 ds~iL  319 (928)
T PF04762_consen  315 DSEIL  319 (928)
T ss_pred             CCCEE
Confidence            65544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.45  E-value=6.6e-05  Score=56.34  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             CccEEEEEcC----CCcEEEEEccCC-C--CceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCC-Cccccee
Q psy18074          2 EAFVFTAANE----DFNLYSYDIRQL-N--SPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQ-GHSRDIY   72 (197)
Q Consensus         2 ~~~~l~~~~~----d~~i~i~d~~~~-~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~-~~~~~~~   72 (197)
                      ++.+|.+...    ++.|..|++... +  ..+............++++|++.+|+++. .+|.|.++++.. +......
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence            4556666544    578999988753 2  22333332345567899999999998887 488999999986 4432221


Q ss_pred             e-c-----------ccccceeEEEEccCCCEEEEEeC-CCcEEEEEcCCCce-ee---eeccccccccccccccceeccc
Q psy18074         73 H-T-----------KRMQHVTHTVWSLDNKFVISASD-EMNLRVWKAHASEK-LG---YVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        73 ~-~-----------~~~~~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-~~---~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      . .           .....+.++.|+|+++++++... ...|.+|++..... +.   .+....       .+....+.|
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-------G~GPRh~~f  199 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-------GSGPRHLAF  199 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-------TSSEEEEEE
T ss_pred             eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-------CCCCcEEEE
Confidence            0 0           11256789999999999886543 45699999876541 21   111111       122478999


Q ss_pred             Ccccceeeeec--CcceEEeecc
Q psy18074        136 HPQIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus       136 s~~~~~l~~~~--~~~~~i~~~~  156 (197)
                      +|+++++....  ...+.+++..
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCcCEEEEecCCCCcEEEEeec
Confidence            99998886443  3356777665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315|consensus

Probab=98.45  E-value=4.7e-06  Score=63.60  Aligned_cols=92  Identities=12%  Similarity=0.336  Sum_probs=69.5

Q ss_pred             EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074          9 ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      |-.=.++.+||++  +.++..+.  +++=.++-|+|.|+.++.++.   .|.+-+||+.+.+++..+..   ...+-..|
T Consensus       290 GfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW  362 (566)
T KOG2315|consen  290 GFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEW  362 (566)
T ss_pred             ecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEE
Confidence            3334567788887  56666553  577788999999999887654   58999999998776666533   35567789


Q ss_pred             ccCCCEEEEEeC------CCcEEEEEcC
Q psy18074         86 SLDNKFVISASD------EMNLRVWKAH  107 (197)
Q Consensus        86 ~~~~~~l~~~~~------dg~i~vwd~~  107 (197)
                      +|||+++++++.      |+.++||+..
T Consensus       363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  363 SPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             cCCCcEEEEEeccccEEecCCeEEEEec
Confidence            999999998753      6789999985

>KOG0882|consensus

Probab=98.43  E-value=1.8e-05  Score=59.31  Aligned_cols=165  Identities=7%  Similarity=0.085  Sum_probs=105.1

Q ss_pred             CCccEEEEEcC-CCcEEEEEccCCCCceeec--ccCCCCeEEEEECCC-C-CEEEE-EeCCCcEEEEECCCCcc-cceee
Q psy18074          1 MEAFVFTAANE-DFNLYSYDIRQLNSPLNVH--KDMTSAVTSVDYSPT-G-REFVA-GGYDKSLRLYLAHQGHS-RDIYH   73 (197)
Q Consensus         1 ~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~-~-~~l~~-~~~d~~v~i~d~~~~~~-~~~~~   73 (197)
                      +|+.++++.+. |..+++||+.+. ..+..+  ....+.+ ++..+|. - ..++. .-.++.+.++|-....+ ...+.
T Consensus        63 ~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   63 YDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             ccceeEeeccCcccceeEEEeecc-chhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            47888999777 999999999763 222222  1222222 2222332 1 13433 34678999999876553 33445


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCC------Cceeeeeccccc-cccccccccceecccCcccceeee-e
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA------SEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRIAR-H  145 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~-~  145 (197)
                      .-|..+|..+.++|.+..+++....|.|.-|....      .+....+..... ..+.-......++.|+|+|..+++ +
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            66889999999999999999999999999998762      101111111100 111112345689999999999984 5


Q ss_pred             cCcceEEeecchhhHHHHhHhH
Q psy18074        146 RQVPRHIYNAQAEHRAIRSKQK  167 (197)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~  167 (197)
                      ++..+.++....++..+..++.
T Consensus       221 ~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cccEEEEEEeccchhhhhhhcc
Confidence            5667888888877776666443

>KOG1354|consensus

Probab=98.41  E-value=2.1e-06  Score=62.02  Aligned_cols=156  Identities=14%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc----------------------------------eeec-ccCCCCeEEEEECCCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP----------------------------------LNVH-KDMTSAVTSVDYSPTG   46 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~----------------------------------~~~~-~~~~~~v~~~~~sp~~   46 (197)
                      ++..|+..+.|.+|++|.+...+..                                  .+.+ .+|.-.|.++.++.|+
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            3456777788999999987532111                                  1111 2344568899999998


Q ss_pred             CEEEEEeCCCcEEEEECCCC-cccceee-cc-----cccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCce----eee
Q psy18074         47 REFVAGGYDKSLRLYLAHQG-HSRDIYH-TK-----RMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEK----LGY  114 (197)
Q Consensus        47 ~~l~~~~~d~~v~i~d~~~~-~~~~~~~-~~-----~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~----~~~  114 (197)
                      ..++++. |-.|-+|++.-. ....... .+     -..-|++.-|+|. .+.++-++..|.|++.|+++...    ...
T Consensus       177 Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  177 ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            8888765 667889988632 1111111 11     1245788899995 67777788899999999984321    001


Q ss_pred             ec----cccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074        115 VN----NKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       115 ~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      +.    +.....+..--+.|..+.|+++|++|++-.-..+.+|+....
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence            11    111122222234578899999999999987789999998533

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.41  E-value=7.3e-05  Score=53.32  Aligned_cols=138  Identities=7%  Similarity=0.061  Sum_probs=83.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcccceeec---c-c
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYS-PTGREFVAGGYDKSLRLYLAHQGHSRDIYHT---K-R   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~-~   76 (197)
                      ++.++++-...+.|+.|+...  .....+.. .. ..++++. ++ ..++.+...+ +.++|..++........   . .
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~--~~~~~~~~-~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~   84 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDT--GEVEVIDL-PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVP   84 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTT--TEEEEEES-SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSC
T ss_pred             CCEEEEEEcCCCEEEEEECCC--CeEEEEec-CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcc
Confidence            577888888889999999875  22333322 22 6677777 56 4455555444 55669988865444322   1 3


Q ss_pred             ccceeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074         77 MQHVTHTVWSLDNKFVISASDE--------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                      ....+.+++.|+|++.++....        |.+..++.. ++.......-.         ..+.++|+|+++.|......
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---------~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---------FPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---------SEEEEEEETTSSEEEEEETT
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---------cccceEECCcchheeecccc
Confidence            3678899999999977766543        456667766 44333222211         14789999999877644333


Q ss_pred             --ceEEeec
Q psy18074        149 --PRHIYNA  155 (197)
Q Consensus       149 --~~~i~~~  155 (197)
                        .+..++.
T Consensus       155 ~~~i~~~~~  163 (246)
T PF08450_consen  155 NGRIWRFDL  163 (246)
T ss_dssp             TTEEEEEEE
T ss_pred             cceeEEEec
Confidence              3444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314|consensus

Probab=98.41  E-value=2e-05  Score=60.45  Aligned_cols=131  Identities=17%  Similarity=0.301  Sum_probs=86.0

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCC-c---ccceeecccccceeEEEEc
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQG-H---SRDIYHTKRMQHVTHTVWS   86 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~-~---~~~~~~~~~~~~v~~v~~~   86 (197)
                      .+.|+.++...-++..+. ....|...+|-|.|..+++-+.   ..++.+|.+.+. .   ++..+..   ...+.+.|+
T Consensus       426 n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfws  501 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWS  501 (698)
T ss_pred             eEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEc
Confidence            456677775455665553 3678899999999998876443   347888888742 2   2222222   467889999


Q ss_pred             cCCCEEEEE---eCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-------cceEEeecc
Q psy18074         87 LDNKFVISA---SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-------VPRHIYNAQ  156 (197)
Q Consensus        87 ~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~~~i~~~~  156 (197)
                      |.|++++.+   +..|.+.++|+.......+-...+..        .+.+.|.|.|+++.+++.       ....||+.+
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--------at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--------ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecchhhhhhccCccccc--------cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            999998755   55788999998743322222111111        368889999999986542       234677654

>KOG1064|consensus

Probab=98.40  E-value=2.5e-06  Score=73.23  Aligned_cols=150  Identities=12%  Similarity=0.120  Sum_probs=105.2

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .+.++|+.||.|++|.-.. ++.+..+. .....|+.+.|+.+|..+..+..||.+.+|..... .. .....|.-....
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-~~-~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-PY-TSWQCHNKALSD 2297 (2439)
T ss_pred             ceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-ce-eccccCCccccc
Confidence            4678999999999998875 34444443 33478999999999999999999999999998822 11 112445555566


Q ss_pred             EEEccCCCEEEEE---eCCCcEEEEEcCCCceeeee-ccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         83 TVWSLDNKFVISA---SDEMNLRVWKAHASEKLGYV-NNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        83 v~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .+|-.  ..++++   ++++.+.+||..-......+ ..|..        .++++++.|.-+.+.+|+ ++.+.+|++++
T Consensus      2298 f~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~--------gaT~l~~~P~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2298 FRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG--------GATVLAYAPKHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             eeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC--------CceEEEEcCcceEEEecCCcCcEEEeehHH
Confidence            66644  556654   45788999997643322222 22222        368999999888888665 56899999988


Q ss_pred             hhHHHHhHh
Q psy18074        158 EHRAIRSKQ  166 (197)
Q Consensus       158 ~~~~~~~~~  166 (197)
                      .+.......
T Consensus      2368 rql~h~~~~ 2376 (2439)
T KOG1064|consen 2368 RQLRHTFQA 2376 (2439)
T ss_pred             HHHHHHhhh
Confidence            777665543

>KOG1334|consensus

Probab=98.39  E-value=1.5e-06  Score=65.36  Aligned_cols=155  Identities=12%  Similarity=0.115  Sum_probs=109.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECC-CCcccce-eecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAH-QGHSRDI-YHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~-~~~~~~~-~~~~~~   77 (197)
                      .|..+++|+.|..|.+||-...........+|...|....|-|.  ...+++++.||.+++=.+. ++....+ ....|.
T Consensus       153 ~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~  232 (559)
T KOG1334|consen  153 RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE  232 (559)
T ss_pred             cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc
Confidence            57889999999999999987643444444678888888888874  4678999999999987764 3443322 235688


Q ss_pred             cceeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccc---cccccccccccceecccCcccc-eeeeec-CcceE
Q psy18074         78 QHVTHTVWSLDNKF-VISASDEMNLRVWKAHASEKLGYVNNK---QRQALDYSESLKQKYAHHPQIR-RIARHR-QVPRH  151 (197)
Q Consensus        78 ~~v~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~~~  151 (197)
                      +.|.-++.-|+..+ |.+++.|+.+.-+|++++.+...+...   ....+     ....++..|... .+|.+. +.-..
T Consensus       233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v-----~L~~Ia~~P~nt~~faVgG~dqf~R  307 (559)
T KOG1334|consen  233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV-----GLYTIAVDPRNTNEFAVGGSDQFAR  307 (559)
T ss_pred             CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce-----eeeeEecCCCCccccccCChhhhhh
Confidence            99999999998655 679999999999999987665444321   11111     136777888544 555444 44668


Q ss_pred             EeecchhhHH
Q psy18074        152 IYNAQAEHRA  161 (197)
Q Consensus       152 i~~~~~~~~~  161 (197)
                      +|+.++-+..
T Consensus       308 vYD~R~~~~e  317 (559)
T KOG1334|consen  308 VYDQRRIDKE  317 (559)
T ss_pred             hhcccchhhc
Confidence            8887655443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.38  E-value=4.3e-05  Score=56.93  Aligned_cols=111  Identities=13%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCC----CCceeeccc-------CCCCeEEEEECCCCCEEEEEe----------CCCcEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL----NSPLNVHKD-------MTSAVTSVDYSPTGREFVAGG----------YDKSLRL   60 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i   60 (197)
                      +|.++.+... |.|++.|+...    ..++..+..       ..+...-++++|++..++...          ..+.|.+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            5667766665 99999996431    122222211       123345599999999888743          2247999


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-FVISAS-DEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~  115 (197)
                      +|..+++.+..+..+  ..+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus       284 iD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       284 VDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999999988877666  5889999999999 777554 6788999999999988877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409|consensus

Probab=98.37  E-value=3.6e-06  Score=60.82  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             EEEEEcCCCcEEEEEccC-CCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          5 VFTAANEDFNLYSYDIRQ-LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      +...|...|.|.+..+.. .-.++..+.+|.+.+.+++|.|....|++|..|..+.+||+--.........+|...|..+
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            344566666666655532 2366778899999999999999999999999999999999976555444456788889999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      +.-+--+.+.+++.||.|.+|+...
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccc
Confidence            8888888899999999999999863

>KOG3621|consensus

Probab=98.37  E-value=2.9e-06  Score=66.47  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce-----eecccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI-----YHTKRM   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~-----~~~~~~   77 (197)
                      +.+++.|+..|.+++|+-...........+..+.+..+..|++..+++.|+..|.|.++.+..+.....     ....|.
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            578999999999999997742222222233456677788899888889999999999998876432221     234467


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      ..|++++|++++..+++|...|.|..-.+.+
T Consensus       125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceEEEEEecccccEEeecCCCceEEEEEech
Confidence            8899999999999999999999998887765

>KOG1008|consensus

Probab=98.35  E-value=1.5e-07  Score=72.83  Aligned_cols=142  Identities=15%  Similarity=0.237  Sum_probs=102.2

Q ss_pred             cEEEEEcCCCcEEEEEccCCCC-ceeecccCCCCeEEEEECC-CCCEEEEEe----CCCcEEEEECCCCcc----cceee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNS-PLNVHKDMTSAVTSVDYSP-TGREFVAGG----YDKSLRLYLAHQGHS----RDIYH   73 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp-~~~~l~~~~----~d~~v~i~d~~~~~~----~~~~~   73 (197)
                      .++++|..+|.|-+-..+.... ......++..++++++|++ |.+.|+.|-    .|..+.|||+.++-.    ...+.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            5678899999999988874322 2455678889999999998 455666653    467899999987621    11222


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-eeccccccccccccccceecccCc-ccceeeeecCcceE
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-YVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQVPRH  151 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~  151 (197)
                      .+-.....+++|-.+.+++.+|.....+.++|++...... .+...          .+..+...| .+.++++..++.+.
T Consensus       151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk----------~vqG~tVdp~~~nY~cs~~dg~iA  220 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK----------YVQGITVDPFSPNYFCSNSDGDIA  220 (783)
T ss_pred             cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh----------hcccceecCCCCCceeccccCcee
Confidence            2233567799999888999999999999999998433221 11111          145677788 88899999999999


Q ss_pred             Eeec
Q psy18074        152 IYNA  155 (197)
Q Consensus       152 i~~~  155 (197)
                      +|+.
T Consensus       221 iwD~  224 (783)
T KOG1008|consen  221 IWDT  224 (783)
T ss_pred             eccc
Confidence            9994

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.35  E-value=2e-05  Score=59.83  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=90.2

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE--eCCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG--GYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      .+++|++++.  ..+....+..++|...+|.|.+..+++.  -.+..+.++|++.+ ....+   ....-+.+.|+|.++
T Consensus       255 snLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r  328 (561)
T COG5354         255 SNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHER  328 (561)
T ss_pred             ceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCccc
Confidence            4688888874  3233333567899999999999887654  47788999999976 22222   224456788999999


Q ss_pred             EEEEEeCC---CcEEEEEcCCCceee-eeccccccccccccccceecccCcccceeeeec-------CcceEEeecchhh
Q psy18074         91 FVISASDE---MNLRVWKAHASEKLG-YVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-------QVPRHIYNAQAEH  159 (197)
Q Consensus        91 ~l~~~~~d---g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~i~~~~~~~  159 (197)
                      +++.++-+   |.+.+||........ .+.+...          .-+.|+||++++.+..       |..+.||+.....
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~----------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT----------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEeecCCc----------eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            99987654   779999987554433 4443332          4567999999887432       3356888876443


Q ss_pred             H
Q psy18074        160 R  160 (197)
Q Consensus       160 ~  160 (197)
                      -
T Consensus       399 ~  399 (561)
T COG5354         399 V  399 (561)
T ss_pred             h
Confidence            3

>KOG0309|consensus

Probab=98.35  E-value=2.2e-06  Score=67.77  Aligned_cols=145  Identities=8%  Similarity=0.159  Sum_probs=101.0

Q ss_pred             EEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          6 FTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      -++........+|++....  .....+.+|...++.+.|+|+.. .+++++.|..+..||+++.....-...........
T Consensus        84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq  163 (1081)
T KOG0309|consen   84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ  163 (1081)
T ss_pred             eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence            3445555667789886422  33455678999999999999754 77899999999999999865433322223356778


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCc--ccceeeeecCcceEEeecchh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHP--QIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      |.|+-....++..+..+.|++||++.|. ++..+.++...        ++.+.|..  .+..+.+..++.+..|+-.+.
T Consensus       164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~--------vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS--------VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eeecccCcchhhhccCCceEEEeccCCCcceEEeccccee--------eehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9998765555666777889999999764 45566554332        56777765  445556677778888886544

>KOG0309|consensus

Probab=98.32  E-value=1.7e-06  Score=68.31  Aligned_cols=108  Identities=14%  Similarity=0.212  Sum_probs=87.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .+-++++++-|..+..||++....++............++|+-....+.+.+....+++||++.|........+|...|+
T Consensus       126 ~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  126 HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN  205 (1081)
T ss_pred             CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence            34578999999999999999877888888877888899999886666666677888999999988765555566888899


Q ss_pred             EEEEccC-CCEEEEEeCCCcEEEEEcCCC
Q psy18074         82 HTVWSLD-NKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        82 ~v~~~~~-~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      .++|+.- ...+.+++.|++|+.||....
T Consensus       206 ~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  206 SIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9998763 445678899999999998743

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.31  E-value=6.1e-06  Score=62.45  Aligned_cols=134  Identities=14%  Similarity=0.046  Sum_probs=95.6

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEE
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFV   92 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l   92 (197)
                      ..|.++........-..+..-..++..++|||.|.+|++....+ |.+|+......+..+  .| ..|..+.|+|.++||
T Consensus        11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~~kYL   86 (561)
T COG5354          11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RH-PDVKYLDFSPNEKYL   86 (561)
T ss_pred             ceEEEeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeee--ec-CCceecccCccccee
Confidence            34555443322333334443567899999999999998876555 888987766544443  22 689999999999999


Q ss_pred             EEEeCCC---------------cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         93 ISASDEM---------------NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        93 ~~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      .+-+..+               .+.+||..+|..+..+......-+     ...-+.|+.+.+++|.-..+.+.|+++
T Consensus        87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~-----~Wp~~k~s~~D~y~ARvv~~sl~i~e~  159 (561)
T COG5354          87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL-----GWPVLKFSIDDKYVARVVGSSLYIHEI  159 (561)
T ss_pred             eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc-----ccceeeeeecchhhhhhccCeEEEEec
Confidence            9865433               499999999998887766544311     123678999999999777788899986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.29  E-value=3.2e-05  Score=65.78  Aligned_cols=110  Identities=13%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCCcee------------eccc--------CCCCeEEEEECCCCCEEEEEeCCCcEEE
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNSPLN------------VHKD--------MTSAVTSVDYSPTGREFVAGGYDKSLRL   60 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~------------~~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~v~i   60 (197)
                      ++. ++++...++.|++||+.+......            .+-.        ......+++++++|..+++-+.++.|++
T Consensus       750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv  829 (1057)
T PLN02919        750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK  829 (1057)
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence            344 667777788999999875221100            0000        0113468899999998888889999999


Q ss_pred             EECCCCcccceeecc------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         61 YLAHQGHSRDIYHTK------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      ||..++......-.+            .-..+..++++++|+.+++-+.++.|++||+.++..
T Consensus       830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        830 LDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999877654332111            113578899999999888888899999999988764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.26  E-value=6.2e-05  Score=57.17  Aligned_cols=109  Identities=9%  Similarity=-0.010  Sum_probs=71.6

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ..+++++.++.++.||..+ ++.......  .....+.  ..+..++.++.+|.++.+|..+++.+............+.
T Consensus       242 ~~vy~~~~~g~l~a~d~~t-G~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRS-GRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CEEEEEEcCCEEEEEECCC-CcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            3556667789999999986 444333321  1111222  2467788888999999999999987654311111122222


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      ..  .+..+++++.+|.++++|..+|+.+..+..+.
T Consensus       317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            22  46688899999999999999999988776443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912|consensus

Probab=98.23  E-value=5e-05  Score=60.68  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC------------CEEEEEeCCCcEEEEECCCCcccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG------------REFVAGGYDKSLRLYLAHQGHSRD   70 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~~~~~d~~v~i~d~~~~~~~~   70 (197)
                      +.+||-|+. ..|.+-|.+. .+.++.+..|...|+.+.|.|..            -.|+++...|.|.+||...+....
T Consensus        26 ~GLiAygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   26 SGLIAYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             cceEEEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            345566654 4688899887 47788999999999999998731            145677788999999999877655


Q ss_pred             eeecccccceeEEEEcc---CCC-EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc
Q psy18074         71 IYHTKRMQHVTHTVWSL---DNK-FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~---~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      .+ ..|..++..++|-+   +.+ .|+.......+.+|+..+|+.+.........        ..|+.+.|
T Consensus       104 ~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i--------Ls~f~~DP  165 (1062)
T KOG1912|consen  104 WL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI--------LSCFRVDP  165 (1062)
T ss_pred             hh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc--------eeeeeeCC
Confidence            55 45667888888866   343 4556667788999999999998877655442        34555555

>KOG1409|consensus

Probab=98.18  E-value=9.7e-05  Score=53.67  Aligned_cols=149  Identities=11%  Similarity=0.143  Sum_probs=100.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCC---CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL---NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH-----------   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~-----------   67 (197)
                      +...|++|-.+|++.-+.+...   -...+....|...+..+.|+....++++.+.|..+.---.+.+.           
T Consensus        79 e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~  158 (404)
T KOG1409|consen   79 ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA  158 (404)
T ss_pred             cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC
Confidence            3467888888899988876421   23455667889999999998878888887766543211111100           


Q ss_pred             -----------------------------ccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-eecc
Q psy18074         68 -----------------------------SRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-YVNN  117 (197)
Q Consensus        68 -----------------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~  117 (197)
                                                   .+..-..+|.+.+.+++|.|..+.+.+|..|..+.+||+--.+.+. .+.+
T Consensus       159 t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  159 SALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             CCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence                                         0001134688999999999999999999999999999997544433 3333


Q ss_pred             ccccccccccccceecccCccc-ceeeeecCcceEEeecchh
Q psy18074        118 KQRQALDYSESLKQKYAHHPQI-RRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       118 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~i~~~~~~  158 (197)
                      +..        .|..+++.+-- +.++++.|+.+.+|++.-.
T Consensus       239 h~~--------kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  239 HND--------KVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             chh--------hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            333        35677766644 4455677778899987644

>KOG1645|consensus

Probab=98.17  E-value=1.1e-05  Score=59.50  Aligned_cols=93  Identities=10%  Similarity=0.194  Sum_probs=73.2

Q ss_pred             EEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCC-CEE
Q psy18074         15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN-KFV   92 (197)
Q Consensus        15 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l   92 (197)
                      +++++..+. .+...+..+...|.+++|||... .+..++.+..|.+.|+++......+...  ..+++.+|.-|. .++
T Consensus       175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCccee
Confidence            555555542 34556677788899999999877 6778899999999999998777666443  789999998875 567


Q ss_pred             EEEeCCCcEEEEEcCCCc
Q psy18074         93 ISASDEMNLRVWKAHASE  110 (197)
Q Consensus        93 ~~~~~dg~i~vwd~~~~~  110 (197)
                      +.|...|.|.+||+++.+
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            788999999999998643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.16  E-value=2e-05  Score=56.48  Aligned_cols=152  Identities=9%  Similarity=0.253  Sum_probs=97.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCc----eeecccCC------------CCeEEEEECCCC--CEEEEEeCCCcEEEEECC
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSP----LNVHKDMT------------SAVTSVDYSPTG--REFVAGGYDKSLRLYLAH   64 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~------------~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~~   64 (197)
                      |.++++|...|.|.+|.-.....+    ...++.|+            ..|..+.|-.++  ..++..+.|.+|++|.+.
T Consensus        38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            688999988899999986542211    22244543            357888886543  467778889999999875


Q ss_pred             CCccc------------------------------------------ceeecccccceeEEEEccCCCEEEEEeCCCcEE
Q psy18074         65 QGHSR------------------------------------------DIYHTKRMQHVTHTVWSLDNKFVISASDEMNLR  102 (197)
Q Consensus        65 ~~~~~------------------------------------------~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  102 (197)
                      .....                                          +.....|...+++++|+.|...++++ +|=.|.
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrIN  196 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRIN  196 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeee
Confidence            32000                                          00112366778999999988887765 477899


Q ss_pred             EEEcCCCce---eeeeccccccccccccccceecccCccc--ceeeeecCcceEEeecchh
Q psy18074        103 VWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQI--RRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       103 vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~i~~~~~~  158 (197)
                      +|++.-...   +.-+.++...-+   ...|++..|+|..  -++.+++.+.+.+.++++.
T Consensus       197 LWnl~i~D~sFnIVDiKP~nmeeL---teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         197 LWNLEIIDGSFNIVDIKPHNMEEL---TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eccccccCCceEEEeccCccHHHH---HHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            998863221   222233322111   1236788899944  4455888889999988744

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=0.00059  Score=49.89  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             CCcEEEEEccCCCCce--eecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCC--Ccccceee-cccccceeEE
Q psy18074         12 DFNLYSYDIRQLNSPL--NVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQ--GHSRDIYH-TKRMQHVTHT   83 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~--~~~~~~~~-~~~~~~v~~v   83 (197)
                      +.-|+.|++.+....+  ..+-...+.++-++|+|+++.|+++..   +|.+--|.+..  |++...-. .....+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            5669999997322212  222345678899999999999988754   46676666653  55433221 1111344899


Q ss_pred             EEccCCCEEEEEeC-CCcEEEEEcCCCceeeee---cccccccc-cccccc-ceecccCcccceeeeecC--cceEEeec
Q psy18074         84 VWSLDNKFVISASD-EMNLRVWKAHASEKLGYV---NNKQRQAL-DYSESL-KQKYAHHPQIRRIARHRQ--VPRHIYNA  155 (197)
Q Consensus        84 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~--~~~~i~~~  155 (197)
                      +++++|++++++.. .|.|.++-++....+...   ..+..... .....+ +....+.|++++|++..-  +.+.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999998765 578999988652222111   11111111 111122 567789999999886543  46788888


Q ss_pred             chhh
Q psy18074        156 QAEH  159 (197)
Q Consensus       156 ~~~~  159 (197)
                      ...+
T Consensus       175 ~dg~  178 (346)
T COG2706         175 DDGK  178 (346)
T ss_pred             ccCc
Confidence            7443

>KOG4640|consensus

Probab=98.13  E-value=2.4e-05  Score=60.90  Aligned_cols=79  Identities=11%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee-EEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT-HTVWSLDNKFVISASDEMNLRVWKAHASEKL  112 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  112 (197)
                      .-.+..+.|+|.-..+|++..+|.|-++-+. ...++.+.. |...++ +++|.|||+.++.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            4567889999999999999999999998888 444455432 334455 9999999999999999999999999988877


Q ss_pred             ee
Q psy18074        113 GY  114 (197)
Q Consensus       113 ~~  114 (197)
                      ..
T Consensus        98 ~~   99 (665)
T KOG4640|consen   98 VS   99 (665)
T ss_pred             ec
Confidence            65

>KOG3621|consensus

Probab=98.11  E-value=2.2e-05  Score=61.71  Aligned_cols=116  Identities=10%  Similarity=0.020  Sum_probs=83.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-e
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-Y  114 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~  114 (197)
                      .+.--+++..+.+++.|+..|.|++|+-..+.+......+..+.+...+.+++..++|.|+..|.|.++-+..+.+.. .
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            344445666789999999999999999988877655433334566777789999899999999999999876543321 1


Q ss_pred             eccccccccccccccceecccCcccceeeeecCcceEEee
Q psy18074        115 VNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus       115 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      +..+..   ..|...|++++|++++..+.+|.+..+..+.
T Consensus       115 ~~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen  115 YVTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             eecccc---ccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            111111   1144568999999999999998877554443

>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery []

Probab=98.10  E-value=7e-08  Score=56.22  Aligned_cols=81  Identities=52%  Similarity=0.883  Sum_probs=70.5

Q ss_pred             eeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhHHHHhHhHhhhhhhhcCCCCCCCCCchhhHhhh
Q psy18074        113 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAV  192 (197)
Q Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (197)
                      ..+...+...+.|.+....-+...|+-..|+-..+.|..|+.....++++.....+++.|+++++.++..+++++|+++|
T Consensus         8 G~ls~REr~~l~Y~~~Lkekyk~~pEIrRI~rhRhvPK~I~~a~~~k~~~~~a~~RKe~nrr~hsk~~~~~~~~erkk~v   87 (88)
T PF04158_consen    8 GVLSPRERAALEYREALKEKYKHMPEIRRIARHRHVPKAIKKAQKIKREMKEAEKRKEENRRKHSKPGAVPPKPERKKHV   87 (88)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCccccccCC
Confidence            33444455556666666778888999999999999999999999999999999999999999999999999999999988


Q ss_pred             h
Q psy18074        193 V  193 (197)
Q Consensus       193 ~  193 (197)
                      |
T Consensus        88 v   88 (88)
T PF04158_consen   88 V   88 (88)
T ss_pred             C
Confidence            6

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.10  E-value=0.00043  Score=50.29  Aligned_cols=155  Identities=12%  Similarity=0.075  Sum_probs=98.8

Q ss_pred             CccEEEEE-----cCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe------------------CCCcE
Q psy18074          2 EAFVFTAA-----NEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG------------------YDKSL   58 (197)
Q Consensus         2 ~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------------~d~~v   58 (197)
                      ||.+|++.     +..|.|-+||....-..+..+..|.-..-.+.+.|||..|+.+.                  .+..+
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            67777775     33578999999843456677777666667788999998777653                  23467


Q ss_pred             EEEECCCCcccceee---cccccceeEEEEccCCCEEEEEeCCCc-------EEEEEcCCCceeeeeccccccccccccc
Q psy18074         59 RLYLAHQGHSRDIYH---TKRMQHVTHTVWSLDNKFVISASDEMN-------LRVWKAHASEKLGYVNNKQRQALDYSES  128 (197)
Q Consensus        59 ~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~  128 (197)
                      .+.|..+|.++....   ..|...+..+++.++|..++..-..|.       +.+++.  ++.+..+...... ...-..
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~-~~~l~~  217 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ-WRRLNG  217 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH-HHhhCC
Confidence            777788888766531   335678999999999987665433322       333332  3323323222111 111123


Q ss_pred             cceecccCcccceee-eecCc-ceEEeecchhh
Q psy18074        129 LKQKYAHHPQIRRIA-RHRQV-PRHIYNAQAEH  159 (197)
Q Consensus       129 ~v~~~~~s~~~~~l~-~~~~~-~~~i~~~~~~~  159 (197)
                      .+-++++++++..++ +++.. .+.+|+.....
T Consensus       218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence            467999999998776 55554 66899776553

>KOG1832|consensus

Probab=98.09  E-value=7.8e-06  Score=66.13  Aligned_cols=152  Identities=14%  Similarity=0.101  Sum_probs=106.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCC-Ccccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK--SLRLYLAHQ-GHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~i~d~~~-~~~~~~~~~~~~~   78 (197)
                      +.+.|++|+..|.|++|+..+ +........|.++|+-+.-+-+|..+++.+.-.  -..+|++.. +.....+     .
T Consensus      1112 ~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----~ 1185 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-----D 1185 (1516)
T ss_pred             CCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc-----c
Confidence            356789999999999999987 566778889999999999999999877655333  466899865 2333333     2


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      .-.++.|+...+.-+.|+......+||+.++..+.++...... ..|.   -++..|+|+...|....    .+|+.+..
T Consensus      1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~-~~y~---~n~a~FsP~D~LIlndG----vLWDvR~~ 1257 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT-SSYS---NNLAHFSPCDTLILNDG----VLWDVRIP 1257 (1516)
T ss_pred             ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh-hhhh---ccccccCCCcceEeeCc----eeeeeccH
Confidence            3457788776555566666677889999998887764332211 1111   25778999888876433    68998877


Q ss_pred             hHHHHhHhH
Q psy18074        159 HRAIRSKQK  167 (197)
Q Consensus       159 ~~~~~~~~~  167 (197)
                      +.+..+.+.
T Consensus      1258 ~aIh~FD~f 1266 (1516)
T KOG1832|consen 1258 EAIHRFDQF 1266 (1516)
T ss_pred             HHHhhhhhh
Confidence            666555443

>KOG1275|consensus

Probab=98.08  E-value=5.5e-05  Score=61.38  Aligned_cols=112  Identities=12%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +++..++.|+....+..+|+++. ...+...-..+.|.-++.  +++.+.+|...|+|.+-|..+.+....+ ..|.+.+
T Consensus       145 ~~~~~~i~Gg~Q~~li~~Dl~~~-~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~si  220 (1118)
T KOG1275|consen  145 MGPSTLIMGGLQEKLIHIDLNTE-KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSI  220 (1118)
T ss_pred             cCCcceeecchhhheeeeecccc-eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccce
Confidence            35667788888888888999863 333333332334666655  6789999999999999999998887777 5577777


Q ss_pred             eEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeccc
Q psy18074         81 THTVWSLDNKFVISASD---------EMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      ..  |+-.|+.|++++.         |..|+|||++..+.+..+..+
T Consensus       221 SD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~  265 (1118)
T KOG1275|consen  221 SD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP  265 (1118)
T ss_pred             ee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence            65  5567899998764         556899999987776655443

>KOG1920|consensus

Probab=98.08  E-value=0.00024  Score=59.43  Aligned_cols=171  Identities=10%  Similarity=0.148  Sum_probs=103.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC----C------------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH----Q------------   65 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~----~------------   65 (197)
                      |++.++.+..+|.|.+-|..+  ..+.....-...|.+++||||+..++..+..+++.+-+-.    .            
T Consensus        79 d~~~i~v~~~~G~iilvd~et--~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~s  156 (1265)
T KOG1920|consen   79 DTNSICVITALGDIILVDPET--LELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKS  156 (1265)
T ss_pred             ccceEEEEecCCcEEEEcccc--cceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccc
Confidence            566778888889999988774  3344444456889999999999999988888877665431    0            


Q ss_pred             -------Ccccceee--c---------------c---cccceeEEEEccCCCEEEEE-----eCCCcEEEEEcCCCceee
Q psy18074         66 -------GHSRDIYH--T---------------K---RMQHVTHTVWSLDNKFVISA-----SDEMNLRVWKAHASEKLG  113 (197)
Q Consensus        66 -------~~~~~~~~--~---------------~---~~~~v~~v~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~  113 (197)
                             |+....+.  .               +   -.+.-.+++|-.||.++++.     .....|+|||.. |..-.
T Consensus       157 k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns  235 (1265)
T KOG1920|consen  157 KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS  235 (1265)
T ss_pred             ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc
Confidence                   11000110  0               0   01223459999999999873     333789999976 33222


Q ss_pred             eeccccccccccccccceecccCcccceeee----ecCcceEEeecchhhHH---HHhHhHhhhhhhhcCCCCCCCC
Q psy18074        114 YVNNKQRQALDYSESLKQKYAHHPQIRRIAR----HRQVPRHIYNAQAEHRA---IRSKQKRKESNKRTHSAPGTVP  183 (197)
Q Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  183 (197)
                      +-.+....        -.+++|-|.|.++|+    .+++.+.+|........   ...-...++.+...|+....+.
T Consensus       236 ~se~~~~l--------~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  236 TSEPVEGL--------QHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             ccCccccc--------ccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            11111111        268999999999984    23345777765443332   1122223335666777665544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.07  E-value=0.00064  Score=48.51  Aligned_cols=129  Identities=11%  Similarity=0.168  Sum_probs=80.5

Q ss_pred             CccEEEEEcCC--------CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcc----
Q psy18074          2 EAFVFTAANED--------FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHS----   68 (197)
Q Consensus         2 ~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~----   68 (197)
                      +|+++++....        |.|+.++..  +. ...+.........++|+|+++.|+ +-+..+.|..|++.....    
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~  172 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN  172 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence            56666665433        345555554  23 222323345678999999998776 556778899999863221    


Q ss_pred             cceeec-cc-ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccC-ccccee
Q psy18074         69 RDIYHT-KR-MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH-PQIRRI  142 (197)
Q Consensus        69 ~~~~~~-~~-~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l  142 (197)
                      ...+.. .. .+..-.+++..+|++.++....+.|.++|.. |+.+..+......        +++++|. ++.+.|
T Consensus       173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~--------~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR--------PTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS--------EEEEEEESTTSSEE
T ss_pred             eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC--------EEEEEEECCCCCEE
Confidence            112211 11 1247889999999988888889999999987 7777666544222        5788884 454443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00013  Score=56.04  Aligned_cols=111  Identities=13%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             CceeecccCCCCeEEEEECCCCCEEEEEe---CC-CcEEEEECCCCcccceeecccccceeEEEEccCCCEEE-EEeCCC
Q psy18074         25 SPLNVHKDMTSAVTSVDYSPTGREFVAGG---YD-KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI-SASDEM   99 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d-~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg   99 (197)
                      .....+......+...+|+|++..++...   .. ..++++++.++.........  +.-...+|+|||+.|+ +...||
T Consensus       183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--CccCCccCCCCCCEEEEEECCCC
Confidence            33444545556788889999998765432   22 46999999988766655322  4455678999999987 445555


Q ss_pred             c--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074        100 N--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       100 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      .  |++.|+.+++... +.....        .-....|+|||++|+-.+
T Consensus       261 ~~~iy~~dl~~~~~~~-Lt~~~g--------i~~~Ps~spdG~~ivf~S  300 (425)
T COG0823         261 SPDIYLMDLDGKNLPR-LTNGFG--------INTSPSWSPDGSKIVFTS  300 (425)
T ss_pred             CccEEEEcCCCCccee-cccCCc--------cccCccCCCCCCEEEEEe
Confidence            4  6777887766332 322221        124778999999998433

>KOG2041|consensus

Probab=98.04  E-value=2.8e-05  Score=61.69  Aligned_cols=109  Identities=11%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc----c----------cceeecccccceeEEEEccCCCEEEEEeCCC
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH----S----------RDIYHTKRMQHVTHTVWSLDNKFVISASDEM   99 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~----~----------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg   99 (197)
                      .....++.|+....++++|+.||.+++..+.+..    .          ......+|...|.-+.|+-..+.|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999998775321    0          1112367899999999999999999999999


Q ss_pred             cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074        100 NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus       100 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                      .|.||-+-.|.=...+..      ....+.|.+++|..||+.|+....+
T Consensus        94 lIiVWmlykgsW~EEMiN------nRnKSvV~SmsWn~dG~kIcIvYeD  136 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMIN------NRNKSVVVSMSWNLDGTKICIVYED  136 (1189)
T ss_pred             eEEEEeeecccHHHHHhh------CcCccEEEEEEEcCCCcEEEEEEcc
Confidence            999998876542221111      1123457899999999988754433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.00017  Score=55.35  Aligned_cols=131  Identities=16%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             CccE-EEEEcCCCc--EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFV-FTAANEDFN--LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~-l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+. +++...||.  |+++|+.. .. ...+....+.-..-.|+|+|+.++..+. .|  .|++++...+.........
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~-~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~  325 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDG-KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG  325 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCC-Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence            3444 444555666  56667664 23 4445554555567889999999886553 33  6777777766553333222


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CCc--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EMN--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                        +.-....|+|||++++..+. +|.  |.+.|+.++.....+.....         ....+|.++++.+...
T Consensus       326 --~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~---------~e~ps~~~ng~~i~~~  387 (425)
T COG0823         326 --GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL---------NESPSWAPNGRMIMFS  387 (425)
T ss_pred             --CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc---------CCCCCcCCCCceEEEe
Confidence              22237889999999986554 344  66667666554333333222         2567788888888743

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00034  Score=57.24  Aligned_cols=144  Identities=11%  Similarity=0.047  Sum_probs=90.9

Q ss_pred             ccEEEEE-cCCCcEEEEEccCCCCceeecccCCCC-eEEEEECC-----CCCEEEEEeCCCcEEEEECCCCc--cccee-
Q psy18074          3 AFVFTAA-NEDFNLYSYDIRQLNSPLNVHKDMTSA-VTSVDYSP-----TGREFVAGGYDKSLRLYLAHQGH--SRDIY-   72 (197)
Q Consensus         3 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp-----~~~~l~~~~~d~~v~i~d~~~~~--~~~~~-   72 (197)
                      .++|+.. .....|+-.|+.. ++.+.....+... |..++-..     .....+.|-.+..++.||.+-..  ++... 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             cceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            3444443 3457788899987 6777777665533 55554321     12345667778889999998532  22111 


Q ss_pred             -ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceE
Q psy18074         73 -HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRH  151 (197)
Q Consensus        73 -~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  151 (197)
                       .-.....-.|++-+.+| +||.|+.+|.|++||-...+....+++        -+.+|..+..+.||+||++.....+.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~--------lG~pI~~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPG--------LGDPIIGIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCC--------CCCCeeEEEecCCCcEEEEeecceEE
Confidence             00122445677666666 678999999999999543222222222        23457899999999999977777777


Q ss_pred             Eeecc
Q psy18074        152 IYNAQ  156 (197)
Q Consensus       152 i~~~~  156 (197)
                      ++++.
T Consensus       643 Li~t~  647 (794)
T PF08553_consen  643 LIDTL  647 (794)
T ss_pred             EEEEe
Confidence            77653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.00  E-value=4.6e-05  Score=54.73  Aligned_cols=127  Identities=9%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc-cee-eccc-----ccceeEEEEccC-CCEEEEEeCCCcEEEE
Q psy18074         33 MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR-DIY-HTKR-----MQHVTHTVWSLD-NKFVISASDEMNLRVW  104 (197)
Q Consensus        33 ~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~-~~~-~~~~-----~~~v~~v~~~~~-~~~l~~~~~dg~i~vw  104 (197)
                      |.-.+.++.++.|...++++. |-.|-+|++.-.... ... ..+|     ..-|++..|+|. ...+.-++..|.|++-
T Consensus       171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            334577888888777777654 667888987632211 111 1122     245788899996 4555667779999999


Q ss_pred             EcCCCce----ee----eeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074        105 KAHASEK----LG----YVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus       105 d~~~~~~----~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      |+++...    ..    ++.+.....+..--+.|..+.|++.|++|++-.-..+.||+....+.
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~  313 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN  313 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence            9984321    00    11111112222223457889999999999998878999999875544

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=2.5e-05  Score=37.61  Aligned_cols=38  Identities=32%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy18074         25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL   62 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d   62 (197)
                      .+...+..|...+.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34555667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645|consensus

Probab=97.97  E-value=0.00049  Score=51.13  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCC
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~   65 (197)
                      ++..++.+.+|.+.|+++ ...+..+..+ ..+++++|.-+.. .++.|..+|.|.+||++.
T Consensus       208 Ll~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  208 LLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             eeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            677788899999999997 4556666665 8999999988654 667788999999999984

>KOG4640|consensus

Probab=97.96  E-value=4.6e-05  Score=59.38  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeE-EEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVT-SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .++|.+..+|.|-++.+.  -+.+..+.-+...++ +++|.|||+.|+.|-.||+|++.|+.++..+..........|.+
T Consensus        33 dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~  110 (665)
T KOG4640|consen   33 DLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISK  110 (665)
T ss_pred             chhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchhe
Confidence            367888888988888776  355666765666666 99999999999999999999999999988766633333467777


Q ss_pred             EEEcc
Q psy18074         83 TVWSL   87 (197)
Q Consensus        83 v~~~~   87 (197)
                      +-|.+
T Consensus       111 ~~w~~  115 (665)
T KOG4640|consen  111 GIWDR  115 (665)
T ss_pred             eeccc
Confidence            77763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.95  E-value=0.00045  Score=58.20  Aligned_cols=104  Identities=9%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             CccEEEEEcC---C---CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCccccee
Q psy18074          2 EAFVFTAANE---D---FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         2 ~~~~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~   72 (197)
                      ||.+||+.+.   +   ..+++|+-.  +......+.-.+--.+++|.|.|+++++.-.   ...|.+|.- +|-....|
T Consensus       220 DG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF  296 (928)
T PF04762_consen  220 DGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEF  296 (928)
T ss_pred             CCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeE
Confidence            7889988764   3   468899876  4433333333445568899999999987653   335555553 34333333


Q ss_pred             ec---ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         73 HT---KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        73 ~~---~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      ..   .....|..++|++|+..||....|. |.+|...+.
T Consensus       297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            11   2346799999999999999866554 999987764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.88  E-value=0.00059  Score=48.23  Aligned_cols=114  Identities=15%  Similarity=0.042  Sum_probs=73.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc---ccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR---MQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---~~~   79 (197)
                      +..+++++.++.|+.||..+ ++.+..... .+.+.... ...+..++.++.++.++.+|..+|+.+.......   ...
T Consensus        36 ~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            45566667899999999976 454444433 22211111 1245667777788899999999999877731211   011


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      ........++..++.+..++.|..+|+.+|+.+.......
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            1222233347788888889999999999999988776533

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.85  E-value=0.0018  Score=49.21  Aligned_cols=108  Identities=16%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      +..+++++.++.|+.+|..+ ++.+............+..  ++..++.++.++.++.+|..+|+........  ..+.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~  139 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAET-GKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLS  139 (377)
T ss_pred             CCEEEEECCCCeEEEEEccC-CcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeec
Confidence            34567777889999999876 4444433322221122222  4677888889999999999999887665332  22221


Q ss_pred             -EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         83 -TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        83 -v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                       ...  .+..++.++.++.+..||..+|+.+.....
T Consensus       140 ~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       140 PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence             111  345667777899999999999998876654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=8.9e-05  Score=55.84  Aligned_cols=100  Identities=13%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             CCCCCEEEEE---------eCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q psy18074         43 SPTGREFVAG---------GYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG  113 (197)
Q Consensus        43 sp~~~~l~~~---------~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  113 (197)
                      |||+++++..         +..+.+++||+.++........  ...+....|+|+|+.++... ++.|.++++.++....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            5777776653         2346899999999876555422  36788999999999998776 5789999988775554


Q ss_pred             eecccccccccccc---------ccceecccCcccceeeee
Q psy18074        114 YVNNKQRQALDYSE---------SLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       114 ~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~  145 (197)
                      .........+.+..         ..-..+.|||||++||..
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            33322222222111         123567899999999843

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832|consensus

Probab=97.79  E-value=6.2e-05  Score=61.22  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC--cEE
Q psy18074         25 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM--NLR  102 (197)
Q Consensus        25 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~  102 (197)
                      ++++.+..|....+|++|+-+.++|+.|+..|.|++|++.+|...... ..|...|+.+.=+.+|..+++.+.-.  -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHH
Confidence            567788888999999999999999999999999999999999877665 67889999998888999887654332  467


Q ss_pred             EEEcCC-CceeeeeccccccccccccccceecccCcccceee-eecCcceEEeecchhhHHHH
Q psy18074        103 VWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQAEHRAIR  163 (197)
Q Consensus       103 vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~~~~~~~  163 (197)
                      +|+... +...+.+...            .++.|+...+.-+ ....+...+|+......-..
T Consensus      1171 LW~~~s~~~~~Hsf~ed------------~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED------------KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HhccccccCcccccccc------------ceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            898764 4444444332            3566766443333 33335678999887755444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.79  E-value=0.0027  Score=45.28  Aligned_cols=143  Identities=11%  Similarity=0.047  Sum_probs=79.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-Cceeec---ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVH---KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-----   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----   72 (197)
                      ||++||+- .|..|.|-..++.- ..+...   .+....=.-++||||+..|+.+...|+|++||+....+....     
T Consensus         8 ~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~   86 (282)
T PF15492_consen    8 DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF   86 (282)
T ss_pred             CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence            67777766 35667766654321 222222   222234578999999999999999999999999854332111     


Q ss_pred             ecccccceeEEEEccC---CC---EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         73 HTKRMQHVTHTVWSLD---NK---FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~---~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ...-...|..+.|-+.   .+   .|+.-..+|.++-|-+..+....-...+.-....+....|.++.++|..+.|..+
T Consensus        87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg  165 (282)
T PF15492_consen   87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG  165 (282)
T ss_pred             CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence            0111235666666442   12   3556677888777765432211111111111111112346888899987766633

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=9.3e-05  Score=35.44  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=28.0

Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEE
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWK  105 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd  105 (197)
                      .|...+.+++|++++..+++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4567899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.75  E-value=0.0054  Score=44.75  Aligned_cols=136  Identities=14%  Similarity=0.035  Sum_probs=82.8

Q ss_pred             ccEEEEEcCCCc-EEEEEccCCCCceeecccCCCC--eEEEEECCCCCEEEEEe-----CCCcEEEEECCCCc-ccceee
Q psy18074          3 AFVFTAANEDFN-LYSYDIRQLNSPLNVHKDMTSA--VTSVDYSPTGREFVAGG-----YDKSLRLYLAHQGH-SRDIYH   73 (197)
Q Consensus         3 ~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~-----~d~~v~i~d~~~~~-~~~~~~   73 (197)
                      +..++.+-.-|. ..+||..+ +.....+....+.  ----.|||||++|++.-     ..|.|-+||...+. .+..+ 
T Consensus        17 ~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-   94 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-   94 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-
Confidence            455666655555 56789886 4444444332322  22458999999999853     45799999999433 33333 


Q ss_pred             cccccceeEEEEccCCCEEEEEe------------------CCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISAS------------------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      ..|.-....+.+.|||+.|+.+-                  ++..+...|..+|+.+....-..    ..+...+..+++
T Consensus        95 ~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~----~~~~lSiRHLa~  170 (305)
T PF07433_consen   95 PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP----DLHQLSIRHLAV  170 (305)
T ss_pred             cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc----cccccceeeEEe
Confidence            33445567888999998877651                  22345555666666554422110    112234688899


Q ss_pred             Ccccceeee
Q psy18074        136 HPQIRRIAR  144 (197)
Q Consensus       136 s~~~~~l~~  144 (197)
                      .++|..+..
T Consensus       171 ~~~G~V~~a  179 (305)
T PF07433_consen  171 DGDGTVAFA  179 (305)
T ss_pred             cCCCcEEEE
Confidence            999877663

>KOG4649|consensus

Probab=97.73  E-value=0.004  Score=44.12  Aligned_cols=110  Identities=11%  Similarity=0.039  Sum_probs=76.2

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      .+++.|+..+.+..-|..++.-......+  ..+.+-+.- -|..++.|...|.+++.+..+|+..+.+.....-.+ ..
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ce
Confidence            45667788888888888764333333322  233322221 367789999999999999999987766633321222 23


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      ...+++..+.+++.|++.+..|..+..++...+.
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            4578899999999999999999999888876543

>KOG2114|consensus

Probab=97.69  E-value=0.0045  Score=50.50  Aligned_cols=149  Identities=15%  Similarity=0.113  Sum_probs=89.3

Q ss_pred             cEEEEEcCCC-----cEEEEEccCC--CC-c--e---eecc----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-
Q psy18074          4 FVFTAANEDF-----NLYSYDIRQL--NS-P--L---NVHK----DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-   65 (197)
Q Consensus         4 ~~l~~~~~d~-----~i~i~d~~~~--~~-~--~---~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-   65 (197)
                      ++|++-+.|+     .|++|++...  +. |  +   +.+.    ....++.+++.+.+-..+++|-.+|.|..+.-.- 
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            4566654444     4889999743  12 2  2   1111    1245789999999989999999999999885431 


Q ss_pred             --CcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         66 --GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        66 --~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                        .............+|+.+++..+++.++.......|.+|.+....+........+       ..+.|..+++....+.
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G-------~~lnCss~~~~t~qfI  230 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG-------ISLNCSSFSDGTYQFI  230 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC-------ccceeeecCCCCccEE
Confidence              1111122223347899999998888755444566788998873332222222222       2246777776544344


Q ss_pred             eecCcceEEeecchhh
Q psy18074        144 RHRQVPRHIYNAQAEH  159 (197)
Q Consensus       144 ~~~~~~~~i~~~~~~~  159 (197)
                      ++....+.+|+....+
T Consensus       231 ca~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  231 CAGSEFLYFYDSDGRG  246 (933)
T ss_pred             EecCceEEEEcCCCcc
Confidence            5555666777665433

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.67  E-value=0.0027  Score=50.61  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             CccEEEEEcCCCcEEEEEccC----CCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcc--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ----LNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHS--------   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~--------   68 (197)
                      ||++...+  ++.|.+.|..+    ....+..+. -......+.++|||+++++++ .+..|.+.|+.+...        
T Consensus       287 dGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            45544443  46799999875    223344443 356678999999999887654 688999999987442        


Q ss_pred             ----cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         69 ----RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        69 ----~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                          ......+  ......+|.++|....+.-.|..|..|++.+
T Consensus       364 ~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                1111122  3456788999998777888899999999875

>KOG3617|consensus

Probab=97.67  E-value=0.00012  Score=59.39  Aligned_cols=112  Identities=13%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CCCeEEEEECCCCCEEEEEe----CCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         34 TSAVTSVDYSPTGREFVAGG----YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~----~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      .+.-+-..|+|....|++++    ..|.|.||- .+|++....  ...-.++++||+|..-.|+.|-.-|.+.+|...+.
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            34445668999988888765    457888874 445543322  11245678999999888889999999999987654


Q ss_pred             ceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecc
Q psy18074        110 EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQ  156 (197)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~  156 (197)
                      + ..+....       +..++..+.||++|..+.++..- .+.+|...
T Consensus        92 e-~htv~~t-------h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 E-THTVVET-------HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             e-eeeeccC-------CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4 3333222       23347899999999999987653 66778765

>KOG2079|consensus

Probab=97.66  E-value=0.00032  Score=58.11  Aligned_cols=101  Identities=16%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--cccccee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--KRMQHVT   81 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~   81 (197)
                      -.++.|+..|.+-..|....-.+...=....++|++++|+.+|..++.|-.+|.|.+||+..+.....+..  .....|-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            35777888888888888631122122223468999999999999999999999999999999887666522  1123455


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      .+.+..++..++++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            5556666677788877776  5544

>KOG1912|consensus

Probab=97.66  E-value=0.00062  Score=54.78  Aligned_cols=102  Identities=13%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC---C-CEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT---G-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~---~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .++|++...|.|.+||... +..+..+..|..++..++|-|.   . ..|+.......+.+|+..+|+..+...-.| ..
T Consensus        80 lliAsaD~~GrIil~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~i  157 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EI  157 (1062)
T ss_pred             eeEEeccccCcEEEEEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cc
Confidence            3688899999999999986 4556677788899999999763   3 356677778899999999999877664443 56


Q ss_pred             eeEEEEcc-CCCEEEEEeCCCcEEEEEcC
Q psy18074         80 VTHTVWSL-DNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        80 v~~v~~~~-~~~~l~~~~~dg~i~vwd~~  107 (197)
                      ..|+.+.| |.+.+...+..|.+.+-+..
T Consensus       158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             eeeeeeCCCCcceEEEEccCceEEEEecc
Confidence            67788888 66777777778887777653

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.65  E-value=0.0027  Score=50.60  Aligned_cols=91  Identities=10%  Similarity=0.003  Sum_probs=58.5

Q ss_pred             CcEEEEECCC----C-cccceeecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCce------------eeeecc
Q psy18074         56 KSLRLYLAHQ----G-HSRDIYHTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEK------------LGYVNN  117 (197)
Q Consensus        56 ~~v~i~d~~~----~-~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~------------~~~~~~  117 (197)
                      +.|.+.|..+    + .....+..+  ..+..++++|||++++ ++..++++.|.|+.+.+.            ......
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            4577777776    2 333333333  5678999999999987 556699999999987553            122221


Q ss_pred             ccccccccccccceecccCcccceeee-ecCcceEEeecch
Q psy18074        118 KQRQALDYSESLKQKYAHHPQIRRIAR-HRQVPRHIYNAQA  157 (197)
Q Consensus       118 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~~~i~~~~~  157 (197)
                      ...         ....+|.++|....+ --+..+..|++..
T Consensus       374 GlG---------PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLG---------PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCC---------cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            111         246678888864443 3355788898765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.63  E-value=0.01  Score=41.89  Aligned_cols=144  Identities=12%  Similarity=-0.009  Sum_probs=80.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceee-cccCC---CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNV-HKDMT---SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~---~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +..+++++.++.++.+|..+ ++.... .....   ...........+..++.+..++.|..+|+.+|..+.........
T Consensus        76 ~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             ccccccccceeeeEecccCC-cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            34455555778999999877 444444 22211   11122222224788888888999999999999887665332111


Q ss_pred             ---------ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCc
Q psy18074         79 ---------HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQV  148 (197)
Q Consensus        79 ---------~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~  148 (197)
                               .+..-....++ .++.++.++.+..+|+.+++.+.... ...         ...+ ...++..+. ...+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---------~~~~-~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---------IYSL-PSVDGGTLYVTSSDG  222 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----------ECEC-EECCCTEEEEEETTT
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---------ccCC-ceeeCCEEEEEeCCC
Confidence                     11122222344 66666777754444999998665333 111         1121 234444444 44466


Q ss_pred             ceEEeecchhh
Q psy18074        149 PRHIYNAQAEH  159 (197)
Q Consensus       149 ~~~i~~~~~~~  159 (197)
                      .+..|++...+
T Consensus       223 ~l~~~d~~tG~  233 (238)
T PF13360_consen  223 RLYALDLKTGK  233 (238)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCC
Confidence            77888876543

...

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.59  E-value=0.0054  Score=37.70  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      +-|++|+.|..|++|+-.   ..+..+.. ...|++++-... ..|+.+..+|+|-+|+-..  .++.....  ..+.++
T Consensus        16 ~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKSK--~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKSK--NQVTSM   86 (111)
T ss_pred             ceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeeccC--CCeEEE
Confidence            578899999999999764   44555654 466777776654 7789999999999997642  22333233  346666


Q ss_pred             EEcc---CC-CEEEEEeCCCcEE
Q psy18074         84 VWSL---DN-KFVISASDEMNLR  102 (197)
Q Consensus        84 ~~~~---~~-~~l~~~~~dg~i~  102 (197)
                      ++..   || ..|++|-.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEE
Confidence            5543   23 3578888888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.59  E-value=0.0062  Score=46.71  Aligned_cols=106  Identities=13%  Similarity=0.023  Sum_probs=66.8

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEE
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTV   84 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~   84 (197)
                      .++.++.++.++.+|+.+. +..-....  +....+..  .+..++.++.+|.++.+|..+|+.+............+..
T Consensus       258 ~vy~~~~~g~l~ald~~tG-~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~  332 (394)
T PRK11138        258 VVYALAYNGNLVALDLRSG-QIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV  332 (394)
T ss_pred             EEEEEEcCCeEEEEECCCC-CEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE
Confidence            4455567889999998873 33322211  11111222  4667888889999999999998765543111111122222


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      .  .+.+++.++.+|.+...|..+|+.+.....
T Consensus       333 v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        333 L--YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            2  255778889999999999999998776643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.57  E-value=0.0017  Score=53.29  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecc----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHK----DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ..-..|-.+..++.||++-.+..+..-.    ......+|++-+.+| +||+|+.+|.|++||-- |..-.+...+-..+
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~p  620 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDP  620 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCC
Confidence            3445666778899999985332222111    123456777666544 68899999999999953 33222222333489


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      |.+|+.+.||+|++..+ +..+.++++
T Consensus       621 I~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  621 IIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eeEEEecCCCcEEEEee-cceEEEEEE
Confidence            99999999999987655 455677775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0882|consensus

Probab=97.56  E-value=0.0023  Score=48.48  Aligned_cols=154  Identities=10%  Similarity=0.017  Sum_probs=104.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC------Cccccee----
Q psy18074          4 FVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ------GHSRDIY----   72 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~------~~~~~~~----   72 (197)
                      .+-++.-.++.+.++|-.... +....-.-|..+|..+.+++.+..+++....|.|.-|....      ......+    
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            344555678899999987533 33333356889999999999999999999999999998873      1111110    


Q ss_pred             ----ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc---------c---------------ccc
Q psy18074         73 ----HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR---------Q---------------ALD  124 (197)
Q Consensus        73 ----~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~---------------~~~  124 (197)
                          .........++.|+|+|..+.+...|..|+++++.+|+.+..+.....         .               -+.
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence                111235678999999999999989999999999998876554431100         0               000


Q ss_pred             ccc-ccceecccCcccceeeeecCcceEEeecch
Q psy18074        125 YSE-SLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus       125 ~~~-~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      -++ ..-....|...|++|.-+.-..+.+.++..
T Consensus       273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t  306 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT  306 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence            011 123456788888988877766776666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.0027  Score=45.62  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=86.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         32 DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        32 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      +-...+.++.|+|+.+.|++..+.+.-.++-...|..+..+....-...-.+.+..+++++++--.++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            33456999999999999988888887778877788887776333234556788888899988888899999998875533


Q ss_pred             eeeeccccc--cccccccccceecccCcc-cceeeeecCcceEEeecchhh
Q psy18074        112 LGYVNNKQR--QALDYSESLKQKYAHHPQ-IRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       112 ~~~~~~~~~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~i~~~~~~~  159 (197)
                      ........-  ......+..-..++|.|. ..+++.....|+.||......
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            222211000  000000122478999994 556667778899999887443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.55  E-value=0.00042  Score=35.71  Aligned_cols=34  Identities=9%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL  112 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  112 (197)
                      ..|.+++|+|...++|.++.+|.|.++.+ +++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            57999999999999999999999999998 55543

>KOG2444|consensus

Probab=97.52  E-value=0.00054  Score=47.26  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=59.6

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccc-ccee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM-QHVT   81 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-~~v~   81 (197)
                      .-+++|+.+|.|++|.....+.....+..-...+.++--.. ++.+..++..+|.++.|++..++.+... ..|. .+..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e  149 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGE  149 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcc
Confidence            34678899999999988744444443333334444333322 3456778999999999999887765543 2232 2333


Q ss_pred             EEEEccCCCEEEEE--eCCCcEEEEEcC
Q psy18074         82 HTVWSLDNKFVISA--SDEMNLRVWKAH  107 (197)
Q Consensus        82 ~v~~~~~~~~l~~~--~~dg~i~vwd~~  107 (197)
                      ....+..++.++.+  +.+..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            33333344444444  445555555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.52  E-value=0.005  Score=49.58  Aligned_cols=114  Identities=20%  Similarity=0.106  Sum_probs=62.6

Q ss_pred             CCeEEEEECCCCCEEEEEe------CCC--cEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCC-CcEEEEE
Q psy18074         35 SAVTSVDYSPTGREFVAGG------YDK--SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE-MNLRVWK  105 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~------~d~--~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~i~vwd  105 (197)
                      ..+...+++|+|..++...      .|.  .|++++.. +.. ..+..+  .......|+|+|..+.+.... ..+++.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            4678889999999887654      233  55555642 222 222233  247889999999988776543 2233333


Q ss_pred             cCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEE
Q psy18074        106 AHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHI  152 (197)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i  152 (197)
                      ......+..+.......-......|..+.|||||.+||.-....+.+
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~V  472 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYL  472 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEE
Confidence            22211222111111000001123478999999999998544444433

>KOG3617|consensus

Probab=97.51  E-value=0.00019  Score=58.19  Aligned_cols=93  Identities=10%  Similarity=0.140  Sum_probs=71.7

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      ..|.|.||--.  +.|.+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.... ...|..++..+.||++|.
T Consensus        39 r~GSVtIfadt--GEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv-~~th~a~i~~l~wS~~G~  114 (1416)
T KOG3617|consen   39 RGGSVTIFADT--GEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV-VETHPAPIQGLDWSHDGT  114 (1416)
T ss_pred             CCceEEEEecC--CCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee-ccCCCCCceeEEecCCCC
Confidence            34677777433  44443332 234467899999888889999999999999887654333 356889999999999999


Q ss_pred             EEEEEeCCCcEEEEEcC
Q psy18074         91 FVISASDEMNLRVWKAH  107 (197)
Q Consensus        91 ~l~~~~~dg~i~vwd~~  107 (197)
                      .++++..-|.+.+|...
T Consensus       115 ~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  115 VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEcCCCceeEEEEee
Confidence            99999999999999876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.47  E-value=0.0099  Score=42.44  Aligned_cols=128  Identities=11%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             ecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         29 VHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        29 ~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      .+.+-...+.+++|+|+.. .+++....+.|..++.. |+.+..+........-.|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4455566799999999865 55566777888888864 777666543334678889998888888887778999999884


Q ss_pred             CCc-ee--eeeccccccccccccccceecccCcc-cceeeeecCcceEEeecch
Q psy18074        108 ASE-KL--GYVNNKQRQALDYSESLKQKYAHHPQ-IRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus       108 ~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~i~~~~~  157 (197)
                      ... .+  .......-......+.....++|.|. +++++.....|..||....
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            321 11  11000000000111233689999995 5556666677988888765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395|consensus

Probab=97.46  E-value=0.003  Score=48.91  Aligned_cols=139  Identities=11%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC--EE-----EEEeCCCcEEEEECCCCcc-cceeeccc-
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR--EF-----VAGGYDKSLRLYLAHQGHS-RDIYHTKR-   76 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l-----~~~~~d~~v~i~d~~~~~~-~~~~~~~~-   76 (197)
                      |.++..-..++-.|+.. ++.+....-+.. |.-+.+.|+..  .+     +.|-.+..|+-||.+-... .......| 
T Consensus       349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            33455555677778776 566666654444 66667777532  22     3455678899999874322 11111122 


Q ss_pred             ---ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEe
Q psy18074         77 ---MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus        77 ---~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                         ...-.|.+-..+ -+++.|+.+|.|++||- .+..-.+..+..+       ..|..+..+.+|++|++..+....+.
T Consensus       427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG-------~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLG-------DAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             cccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccC-------CceeeEEeeccCcEEEEecccEEEEE
Confidence               123344443334 47899999999999997 3433333322222       34688999999999987766655444


Q ss_pred             ec
Q psy18074        154 NA  155 (197)
Q Consensus       154 ~~  155 (197)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            43

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.43  E-value=0.011  Score=45.99  Aligned_cols=133  Identities=8%  Similarity=0.000  Sum_probs=72.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +|+++++ +.||.-.+|..... .  ...   .+.....+|.+ ...+++-.....|.++.--+......+...  ..+.
T Consensus        43 ngr~v~V-~g~geY~iyt~~~~-r--~k~---~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~  112 (443)
T PF04053_consen   43 NGRFVLV-CGDGEYEIYTALAW-R--NKA---FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVE  112 (443)
T ss_dssp             TSSEEEE-EETTEEEEEETTTT-E--EEE---EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----S--S-EE
T ss_pred             CCCEEEE-EcCCEEEEEEccCC-c--ccc---cCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcCC--cccc
Confidence            5666666 44677777773321 1  111   24456778888 445676666888888633223322222122  1344


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      .+-.   |..|...+.+ .|.+||..+++.+..+....          |..+.|+++|.++|....+.+.|++....
T Consensus       113 ~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~----------vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  113 KIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA----------VKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             EEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-----------EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             eEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC----------CcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            4422   7777766544 79999999999888776442          46888999999999888888888775444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2079|consensus

Probab=97.40  E-value=0.00083  Score=55.82  Aligned_cols=110  Identities=10%  Similarity=0.080  Sum_probs=73.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccc
Q psy18074         45 TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD  124 (197)
Q Consensus        45 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  124 (197)
                      .+..++.|+..|.+-.+|+..+-..........++|++++|+.+|+.++.|-.+|.|.+||...++....+..+....  
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~--  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV--  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc--
Confidence            566788888899999988886522111111224789999999999999999999999999999988877665443321  


Q ss_pred             cccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074        125 YSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus       125 ~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                         ..+-.+.+..++..+.++..+.. +|+..-.+.
T Consensus       176 ---t~vi~v~~t~~nS~llt~D~~Gs-f~~lv~nk~  207 (1206)
T KOG2079|consen  176 ---TGVIFVGRTSQNSKLLTSDTGGS-FWKLVFNKA  207 (1206)
T ss_pred             ---ceEEEEEEeCCCcEEEEccCCCc-eEEEEechh
Confidence               01223344455555555544433 777655544

>KOG4190|consensus

Probab=97.36  E-value=0.00071  Score=52.55  Aligned_cols=111  Identities=9%  Similarity=-0.023  Sum_probs=75.0

Q ss_pred             EcCCCcEEEEEccCCCCceeecc--cCCCCeEEEEECCC--CCEEEE-EeCCCcEEEEECCCCccccee----ecccccc
Q psy18074          9 ANEDFNLYSYDIRQLNSPLNVHK--DMTSAVTSVDYSPT--GREFVA-GGYDKSLRLYLAHQGHSRDIY----HTKRMQH   79 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~--~~~l~~-~~~d~~v~i~d~~~~~~~~~~----~~~~~~~   79 (197)
                      ++.||.|++||.-- +.++..+.  ...+.+..+..-|+  ...++. ++...+|+++|.+.++.....    ..+...-
T Consensus       800 ~ScD~giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  800 ASCDGGIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             eeccCcceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            34578899999754 34433221  11233444444343  334444 477889999999987644333    1233456


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      +.+++..+.|++++.+-..|.|.+.|.++|+.+..+.+-+.
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec  919 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC  919 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc
Confidence            89999999999999999999999999999998876665443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.014  Score=43.03  Aligned_cols=118  Identities=12%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCC--C----cccceeecccccceeEEEEcc
Q psy18074         15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQ--G----HSRDIYHTKRMQHVTHTVWSL   87 (197)
Q Consensus        15 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~--~----~~~~~~~~~~~~~v~~v~~~~   87 (197)
                      |+.+|..  +...+.+..+-..-++++||||++.|+.+.. .+.|+-|++..  +    ...........+..-.++...
T Consensus       145 lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         145 LYRVDPD--GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             EEEEcCC--CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            4444432  4555555555566789999999987776654 47788887752  2    111112122335566777888


Q ss_pred             CCCEEEEEeCCC-cEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceee
Q psy18074         88 DNKFVISASDEM-NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIA  143 (197)
Q Consensus        88 ~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  143 (197)
                      +|.+.+++...| .|..|+.. |+.+..+......        +++++|-. +.+.|.
T Consensus       223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~--------~t~~~FgG~~~~~L~  271 (307)
T COG3386         223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR--------PTNPAFGGPDLNTLY  271 (307)
T ss_pred             CCCEEEecccCCceEEEECCC-CcEEEEEECCCCC--------CccceEeCCCcCEEE
Confidence            888886555444 89999988 7777766554322        46777753 444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.35  E-value=0.021  Score=46.11  Aligned_cols=113  Identities=6%  Similarity=-0.075  Sum_probs=62.8

Q ss_pred             CeEEEEECCCCCEEEEEeCC------------CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEE
Q psy18074         36 AVTSVDYSPTGREFVAGGYD------------KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRV  103 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~v  103 (197)
                      ..+...|+|+|..+++....            +.+++.++..+....    .....|..+.|||||..++... ++.|.+
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            47889999998877766432            233333444433322    1125799999999999988655 467766


Q ss_pred             ---EEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074        104 ---WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       104 ---wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                         -....|.  ..+... ..........+..+.|..++.+++........+|...
T Consensus       473 a~Vvr~~~G~--~~l~~~-~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        473 AVVEQTEDGQ--YALTNP-REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEEeCCCCc--eeeccc-EEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence               3333343  222110 0000001122467889999986654333333445443

>KOG1920|consensus

Probab=97.34  E-value=0.0082  Score=50.82  Aligned_cols=105  Identities=11%  Similarity=0.221  Sum_probs=65.8

Q ss_pred             CccEEEE-----EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE---eCCCcEEEEECCC---Ccccc
Q psy18074          2 EAFVFTA-----ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG---GYDKSLRLYLAHQ---GHSRD   70 (197)
Q Consensus         2 ~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~d~~v~i~d~~~---~~~~~   70 (197)
                      ||.++|+     ......|++||..  +..-..-....+.=.+++|-|.|..+++.   +.|+.|.+|.-..   |+...
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l  283 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL  283 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence            6778887     3333789999976  22221112223334589999999999874   3455788887542   22211


Q ss_pred             eeecccccceeEEEEccCCCEEEE---EeCCCcEEEEEcCCC
Q psy18074         71 IYHTKRMQHVTHTVWSLDNKFVIS---ASDEMNLRVWKAHAS  109 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~~~~~l~~---~~~dg~i~vwd~~~~  109 (197)
                      .+ ......+..++|+.++..|+.   ......|.+|-+.+.
T Consensus       284 ~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  284 PF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CC-cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            11 111234899999999999886   344445999987653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.31  E-value=0.031  Score=39.93  Aligned_cols=146  Identities=11%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc-----eeec----c-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC---Ccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP-----LNVH----K-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ---GHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~----~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~---~~~   68 (197)
                      ++.++++.-.++.+.++++......     ...+    . .+...+-.++|+|.+..|+.+-......+|.+..   +..
T Consensus        75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            3555666656888999888432211     1111    1 2345689999999888887776665566666543   111


Q ss_pred             ccee-------ecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCccc
Q psy18074         69 RDIY-------HTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        69 ~~~~-------~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~  139 (197)
                      ....       .......+.+++++|. +.+++.+..+..+..+| .+|+.+..+.-... ..+...-.....++|.++|
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            1111       0112356789999996 45566777788898999 56776654432221 0000001124689999999


Q ss_pred             ceeeeecCc
Q psy18074        140 RRIARHRQV  148 (197)
Q Consensus       140 ~~l~~~~~~  148 (197)
                      ++.+++..+
T Consensus       234 ~LYIvsEpN  242 (248)
T PF06977_consen  234 NLYIVSEPN  242 (248)
T ss_dssp             -EEEEETTT
T ss_pred             CEEEEcCCc
Confidence            877777644

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.27  E-value=0.0021  Score=33.11  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECC
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAH   64 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~   64 (197)
                      ...|..++|+|....++.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999983

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.21  E-value=0.049  Score=40.59  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceee-cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC--Ccccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNV-HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ--GHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~   78 (197)
                      ++.++++.  ++.|++|++......... .......+.++..  .+.+++.|.....+.++....  .............
T Consensus        98 ~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~  173 (321)
T PF03178_consen   98 NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR  173 (321)
T ss_dssp             TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred             CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence            34544444  368999999863312222 1222335666655  466899998888888775443  2233222222345


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      .++++.|-++++.++.++.+|.+.++...
T Consensus       174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            68888888777788999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2114|consensus

Probab=97.20  E-value=0.026  Score=46.35  Aligned_cols=114  Identities=10%  Similarity=0.016  Sum_probs=75.2

Q ss_pred             CccEEEEEcCCCcEEEEEc---cCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDI---RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +-+.+|+|-.+|.|..+.-   +..+...........+|+++.+..+++.++.+.....|.+|.+....+.......|..
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~  215 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI  215 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence            3467899999999998853   2222323333344679999999988887555555677999999844422222345567


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                      ..+|..+++....+++++ +..+.+|+....+.-..+.
T Consensus       216 ~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  216 SLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            889999987655455554 4568999987554444444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.055  Score=41.42  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=84.6

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeeccccccee
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      .++....++.|.+.|... ........- ......++++|++..++.+..   ++.+.+.|..++........+.  ...
T Consensus        88 vyv~~~~~~~v~vid~~~-~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P~  163 (381)
T COG3391          88 VYVTTGDSNTVSVIDTAT-NTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TPT  163 (381)
T ss_pred             EEEecCCCCeEEEEcCcc-cceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Ccc
Confidence            556666677888888664 233333322 225678999999988876654   6889899988888766653432  238


Q ss_pred             EEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         82 HTVWSLDNKFVISA-SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        82 ~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      .++++|+|..++.. ..++.+.+.|........ -.....   .........+.++|+|.++..
T Consensus       164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~---~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL---VGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc---cccCCCCceEEECCCCCEEEE
Confidence            89999999976644 578899999976554432 110000   000111356778898886653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.14  E-value=0.054  Score=39.28  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee---------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY---------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~---------   72 (197)
                      .+..++.|+.+| +++|+......+.....  ...|..+..-|+-+.+++-+ |+.++++++..-......         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            467888898888 99999943233333332  33499999999877776655 599999998754332210         


Q ss_pred             ----ecccccceeEEE--EccCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeccccccccccccccceecccCcccce
Q psy18074         73 ----HTKRMQHVTHTV--WSLDNKFVISASDEMNLRVWKAHAS-----EKLGYVNNKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        73 ----~~~~~~~v~~v~--~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                          .......+...+  -.+.+...++......|.+|.....     .....+...         ..+..++|.  +..
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---------~~~~~i~~~--~~~  150 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---------DPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---------CCcEEEEEe--CCE
Confidence                011123344444  1123333333344457888876542     222222222         224677777  455


Q ss_pred             eeeecCcceEEeecchh
Q psy18074        142 IARHRQVPRHIYNAQAE  158 (197)
Q Consensus       142 l~~~~~~~~~i~~~~~~  158 (197)
                      |+.+......+.++...
T Consensus       151 i~v~~~~~f~~idl~~~  167 (275)
T PF00780_consen  151 ICVGTSKGFYLIDLNTG  167 (275)
T ss_pred             EEEEeCCceEEEecCCC
Confidence            66555566777777643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.06  E-value=0.027  Score=43.47  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             eEEEEECCCCCEEEEE-eCCC----cEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCC-----------Cc
Q psy18074         37 VTSVDYSPTGREFVAG-GYDK----SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE-----------MN  100 (197)
Q Consensus        37 v~~~~~sp~~~~l~~~-~~d~----~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------g~  100 (197)
                      +....+||+|++++.+ +..|    .++++|+.+|..+......  .....+.|.++++.++....+           ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467899999988754 3333    6999999999765432121  112239999999887754322           23


Q ss_pred             EEEEEcCCCcee--eeeccccccccccccccceecccCcccceee
Q psy18074        101 LRVWKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus       101 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      |+.|.+.+....  ..+.......      ....+..++|+++|.
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~------~~~~~~~s~d~~~l~  242 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPF------WFVSVSRSKDGRYLF  242 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTT------SEEEEEE-TTSSEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCc------EEEEEEecCcccEEE
Confidence            778887765443  2333322221      024677889999877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649|consensus

Probab=97.04  E-value=0.063  Score=38.32  Aligned_cols=83  Identities=8%  Similarity=-0.065  Sum_probs=55.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      |.+++.|+..|.+++.+..+ +.....+...+.-=......+++..++.++.|+..+..|.++..++.....+. +.-.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~s  140 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVS  140 (354)
T ss_pred             CCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-ceecc
Confidence            56788899999999999987 44444443322222234567789999999999999999998776655443331 22234


Q ss_pred             EEEcc
Q psy18074         83 TVWSL   87 (197)
Q Consensus        83 v~~~~   87 (197)
                      .+..|
T Consensus       141 P~i~~  145 (354)
T KOG4649|consen  141 PVIAP  145 (354)
T ss_pred             ceecC
Confidence            45555

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.11  Score=39.86  Aligned_cols=125  Identities=12%  Similarity=-0.022  Sum_probs=80.4

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccc-ee--ecccccceeEEEEcc
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRD-IY--HTKRMQHVTHTVWSL   87 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~-~~--~~~~~~~v~~v~~~~   87 (197)
                      ++.+.+.|..+ .........-..+ ..++++|+|..++... .++.|.+.|........ ..  ...-......+.++|
T Consensus       139 ~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~  216 (381)
T COG3391         139 NNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP  216 (381)
T ss_pred             CceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence            67788888775 3444444332334 8899999999776654 78899999977665442 10  011124567889999


Q ss_pred             CCCEEEEEeCC---CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         88 DNKFVISASDE---MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        88 ~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +|.++......   +.+...|..++.............       ...+..+|+|..+...
T Consensus       217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~-------~~~v~~~p~g~~~yv~  270 (381)
T COG3391         217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA-------PRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC-------CCceeECCCCCEEEEE
Confidence            99977654433   589999998877665422111100       2467788888777644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.075  Score=38.47  Aligned_cols=159  Identities=15%  Similarity=0.071  Sum_probs=95.3

Q ss_pred             CCccEEEEEcCC-----CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC------------------CCc
Q psy18074          1 MEAFVFTAANED-----FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY------------------DKS   57 (197)
Q Consensus         1 ~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------------d~~   57 (197)
                      .||.+|.+.-+|     |.|-+||.+..-+.+-.+..|.-....+.|.+||+.++.++.                  ...
T Consensus       123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS  202 (366)
T COG3490         123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS  202 (366)
T ss_pred             CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence            367777775443     678999998645667778888777788999999999887542                  135


Q ss_pred             EEEEECCCCcccceee---cccccceeEEEEccCCCEEEEEeCCCc-----EEEEEcCCCceeeeecccccccccccccc
Q psy18074         58 LRLYLAHQGHSRDIYH---TKRMQHVTHTVWSLDNKFVISASDEMN-----LRVWKAHASEKLGYVNNKQRQALDYSESL  129 (197)
Q Consensus        58 v~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  129 (197)
                      +.+.|..+|.++....   .-+...+..++..+||+.++.+-..|.     -.+=....++.+..+...+.... .-...
T Consensus       203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~-~~anY  281 (366)
T COG3490         203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA-AFANY  281 (366)
T ss_pred             EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH-HHHhh
Confidence            5556656666543321   124467889999999987765543332     22222334454444433332111 11223


Q ss_pred             ceecccCccccee-eeecCc-ceEEeecchhhH
Q psy18074        130 KQKYAHHPQIRRI-ARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus       130 v~~~~~s~~~~~l-~~~~~~-~~~i~~~~~~~~  160 (197)
                      +-+++.+.+..++ ++++.+ ...||++.....
T Consensus       282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             hhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence            5567776544444 466655 458898876544

>KOG2444|consensus

Probab=96.92  E-value=0.0092  Score=41.39  Aligned_cols=108  Identities=10%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             CCEEEEEeCCCcEEEEECCC-CcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccc
Q psy18074         46 GREFVAGGYDKSLRLYLAHQ-GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD  124 (197)
Q Consensus        46 ~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  124 (197)
                      +..+++|+.+|.|++|+..- +........+-....+.+.-..++.+..++..+|.|+.|+...++.+.....+...   
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~---  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE---  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC---
Confidence            56788999999999998762 22222221221122222322334567789999999999999877776655444421   


Q ss_pred             cccccceecccCcccceeeee---cCcceEEeecchhhH
Q psy18074        125 YSESLKQKYAHHPQIRRIARH---RQVPRHIYNAQAEHR  160 (197)
Q Consensus       125 ~~~~~v~~~~~s~~~~~l~~~---~~~~~~i~~~~~~~~  160 (197)
                          ....+..+..+..++..   .+.....|++.+...
T Consensus       147 ----~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  147 ----SGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             ----CcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence                12344445555555533   333557777765544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.91  E-value=0.0035  Score=47.34  Aligned_cols=82  Identities=18%  Similarity=0.298  Sum_probs=53.7

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc---------------
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR---------------   76 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---------------   76 (197)
                      .+.+.+||+.+ +. ...+......+....|||+|..++... ++.|++++..++........+.               
T Consensus        22 ~~~y~i~d~~~-~~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIET-GE-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTT-TE-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCC-Cc-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            35688999986 23 333433367889999999999998876 5789999987664433322210               


Q ss_pred             -ccceeEEEEccCCCEEEEEe
Q psy18074         77 -MQHVTHTVWSLDNKFVISAS   96 (197)
Q Consensus        77 -~~~v~~v~~~~~~~~l~~~~   96 (197)
                       -+.-..+-|||||++|+...
T Consensus        99 v~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEE
Confidence             12235688999999998653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.90  E-value=0.031  Score=42.92  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEE-ccC----------------CCEE
Q psy18074         30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW-SLD----------------NKFV   92 (197)
Q Consensus        30 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~-~~~----------------~~~l   92 (197)
                      +.+....+.++..+|.+++.++...-|.|.++|+..+..++....-+...+.-+.. ...                ..+|
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            44555668999999999988888888999999999887666542111111110100 000                1122


Q ss_pred             -EEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         93 -ISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        93 -~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                       +-+...|.|.||++++|..+..+....
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence             256778999999999999887775443

>KOG1008|consensus

Probab=96.85  E-value=0.00093  Score=52.66  Aligned_cols=103  Identities=12%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEE-CCCCcc-ccee-ecc--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYL-AHQGHS-RDIY-HTK--   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d-~~~~~~-~~~~-~~~--   75 (197)
                      +.+++.+|.....+.++|++........+  .+..+..+..+| .+.++++ ..||.+-+|| .+.-+. +... ...  
T Consensus       165 d~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~  241 (783)
T KOG1008|consen  165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENK  241 (783)
T ss_pred             Ccchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCC
Confidence            44667788888889999988322222222  234677788888 5566554 5599999999 443222 2211 111  


Q ss_pred             cccceeEEEEccC--CCEEEEEeCCCcEEEEEcC
Q psy18074         76 RMQHVTHTVWSLD--NKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        76 ~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~  107 (197)
                      ....+..++|+|.  |...+...+.++|+++|+.
T Consensus       242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            1134889999995  3333344567889999986

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.84  E-value=0.032  Score=42.84  Aligned_cols=99  Identities=11%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +..++.++.++.++.+|..+ ++.+-...... ....+...  .+..++.++.+|.++..|..+|+.+............
T Consensus       294 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s  370 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS  370 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence            34556667789999999876 33332221111 11122222  3567888899999999999999877665332111112


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      ...+  .+..|+.++.+|.++.+++
T Consensus       371 ~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        371 EPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE--ECCEEEEEeCCceEEEEeC
Confidence            2222  2457788889999887764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.73  E-value=0.091  Score=37.79  Aligned_cols=102  Identities=21%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEE-cCCCceee
Q psy18074         36 AVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK-AHASEKLG  113 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~  113 (197)
                      .+.+.++++++..++... .++.-.+|-...+........+  ..+....|++++...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999887655 2333333333333333332233  4778889999988777766666666663 23332211


Q ss_pred             -eeccccccccccccccceecccCcccceeeee
Q psy18074        114 -YVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       114 -~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                       ........      ..|..|.+||||.++|.-
T Consensus       103 ~~v~~~~~~------~~I~~l~vSpDG~RvA~v  129 (253)
T PF10647_consen  103 VEVDWPGLR------GRITALRVSPDGTRVAVV  129 (253)
T ss_pred             EEecccccC------CceEEEEECCCCcEEEEE
Confidence             11111100      047899999999999843

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.70  E-value=0.13  Score=39.10  Aligned_cols=136  Identities=14%  Similarity=0.162  Sum_probs=60.6

Q ss_pred             EEEEccCCCCceeecccCC--CCeEEEEECCCCCEEEEEe-----CCCcEEEEECCCCcccceeecccccceeEEEEccC
Q psy18074         16 YSYDIRQLNSPLNVHKDMT--SAVTSVDYSPTGREFVAGG-----YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD   88 (197)
Q Consensus        16 ~i~d~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~   88 (197)
                      +||-++..+.-...+..+.  ..+.-=-|.|+|..+..-+     .+..|.-+|+.++........   ......--++|
T Consensus       217 RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~D  293 (386)
T PF14583_consen  217 RIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPD  293 (386)
T ss_dssp             SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TT
T ss_pred             EEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCC
Confidence            6777764444444443332  2355556899998776422     344677788888765433222   23344555789


Q ss_pred             CCEEEEEeCC----------------CcEEEEEcCCCceeeeeccccc--cccccccc-cceecccCcccceee--eecC
Q psy18074         89 NKFVISASDE----------------MNLRVWKAHASEKLGYVNNKQR--QALDYSES-LKQKYAHHPQIRRIA--RHRQ  147 (197)
Q Consensus        89 ~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~-~v~~~~~s~~~~~l~--~~~~  147 (197)
                      |++++.=+.|                -.|+++++..+.... +..+..  .++..+.. .=..+.|+|||++|+  +...
T Consensus       294 g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~  372 (386)
T PF14583_consen  294 GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDME  372 (386)
T ss_dssp             SSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TT
T ss_pred             CCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCC
Confidence            9987643222                146677777655432 111111  00110000 013678999999998  4445


Q ss_pred             cceEEeec
Q psy18074        148 VPRHIYNA  155 (197)
Q Consensus       148 ~~~~i~~~  155 (197)
                      +...||-+
T Consensus       373 G~~~vY~v  380 (386)
T PF14583_consen  373 GPPAVYLV  380 (386)
T ss_dssp             SS-EEEEE
T ss_pred             CCccEEEE
Confidence            56677754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.63  E-value=0.16  Score=38.69  Aligned_cols=121  Identities=8%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             cEEEEEccCC-CC--ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEE-ECCCC-----cccce---eecc---ccc
Q psy18074         14 NLYSYDIRQL-NS--PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY-LAHQG-----HSRDI---YHTK---RMQ   78 (197)
Q Consensus        14 ~i~i~d~~~~-~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~-d~~~~-----~~~~~---~~~~---~~~   78 (197)
                      .|.+++-.+. +.  ....+.........+++.+++  |+++.... |..| +....     +....   +...   +..
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~  124 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHH  124 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence            6766654321 22  223333334456889999888  44444444 4444 44321     11111   1111   123


Q ss_pred             ceeEEEEccCCCEEEEEeCC-------------------CcEEEEEcCCCceeeeeccccccccccccccceecccCccc
Q psy18074         79 HVTHTVWSLDNKFVISASDE-------------------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  139 (197)
                      ....++|.|||.+.++-+..                   |.|.-++..+++. ..+.....        ....++|+++|
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~r--------np~Gl~~d~~G  195 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQ--------NPYGHSVDSWG  195 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcC--------CCccceECCCC
Confidence            47789999999876644421                   3344444443332 22221111        14689999999


Q ss_pred             ceeeeec
Q psy18074        140 RRIARHR  146 (197)
Q Consensus       140 ~~l~~~~  146 (197)
                      +++++..
T Consensus       196 ~l~~tdn  202 (367)
T TIGR02604       196 DVFFCDN  202 (367)
T ss_pred             CEEEEcc
Confidence            8887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395|consensus

Probab=96.60  E-value=0.041  Score=42.99  Aligned_cols=98  Identities=15%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             EEEcCCCcEEEEEccCCCC-ceeecccCC----CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          7 TAANEDFNLYSYDIRQLNS-PLNVHKDMT----SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~~~-~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.|-.|..|+-||++-.+. .+...+.|+    ....|.+-.. .-+++.|+.+|.|++||- .+..-.+...+-...|.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIK  475 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccccCCcee
Confidence            4566788899999984333 222223332    2344444433 347889999999999997 44443333344447899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      .|..+.+|++++..+ +..+.+.++.
T Consensus       476 hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  476 HVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eEEeeccCcEEEEec-ccEEEEEEEe
Confidence            999999999987655 4556666654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.48  E-value=0.15  Score=41.44  Aligned_cols=114  Identities=5%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEc--cCCCEEEEEeCCCcEEEEEcCC-----
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWS--LDNKFVISASDEMNLRVWKAHA-----  108 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~l~~~~~dg~i~vwd~~~-----  108 (197)
                      ...-+.-|.-+..-++-+....+.|||.+.+...-.......+.|..+.|.  |+|+.+++.+..+.|.++.-..     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            334444444344334444556899999998874333222335789999995  6899999999999999985421     


Q ss_pred             -Cc---eeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074        109 -SE---KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus       109 -~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                       +.   .+..+.     .......+|....|.++|..+++. ++.+.|++-
T Consensus       111 ~~p~w~~i~~i~-----i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKID-----ISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEE-----eecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence             11   111110     011112346788899999887654 355666654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4460|consensus

Probab=96.45  E-value=0.17  Score=39.82  Aligned_cols=79  Identities=16%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEC---------CCCcccc----------eeecccccceeEEEEccCC---CEEE
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLA---------HQGHSRD----------IYHTKRMQHVTHTVWSLDN---KFVI   93 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~---------~~~~~~~----------~~~~~~~~~v~~v~~~~~~---~~l~   93 (197)
                      .|..+..++.|..++..+.+|.+.++-.         .+|+...          .+.....-.+..++|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4677788999999998888985544321         1232111          1111112356778999974   6788


Q ss_pred             EEeCCCcEEEEEcCCCceeee
Q psy18074         94 SASDEMNLRVWKAHASEKLGY  114 (197)
Q Consensus        94 ~~~~dg~i~vwd~~~~~~~~~  114 (197)
                      .-+.|+.|++||+.....++.
T Consensus       185 iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             EEecCcEEEEEecCCcchhhc
Confidence            888899999999987766643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.35  E-value=0.18  Score=39.38  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC---------c--ccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG---------H--SRDI   71 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~---------~--~~~~   71 (197)
                      |.+|...+.+ .|.+||..+ ++.++.+..  .+|..+.|+++|++++..+.+ .+++++....         .  ....
T Consensus       117 G~LL~~~~~~-~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~  191 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWET-GKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFEL  191 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred             CcEEEEECCC-CEEEEEhhH-cceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEE
Confidence            5556666544 799999987 567777753  248999999999999888755 4777664422         1  1111


Q ss_pred             eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeecCcce
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHRQVPR  150 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~  150 (197)
                      . ..-...|.+.+|.-+  .++-.+.. .++-  +..|+.         ..+..-+.++.-+.+.|.. +..+...+..+
T Consensus       192 ~-~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~---------~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v  256 (443)
T PF04053_consen  192 I-HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET---------GIIAHLDKPLYLLGYLPKENRLYLIDRDGNV  256 (443)
T ss_dssp             E-EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE---------EEEEE-SS--EEEEEETTTTEEEEE-TT--E
T ss_pred             E-EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc---------ceEEEcCCceEEEEEEccCCEEEEEECCCCE
Confidence            1 111357888888654  33322222 3433  222322         2222222234555666633 33345555677


Q ss_pred             EEeecchhhHHH
Q psy18074        151 HIYNAQAEHRAI  162 (197)
Q Consensus       151 ~i~~~~~~~~~~  162 (197)
                      ..+.+....-.-
T Consensus       257 ~~~~ld~~~~~f  268 (443)
T PF04053_consen  257 ISYELDLSELEF  268 (443)
T ss_dssp             EEEE--HHHHHH
T ss_pred             EEEEECHHHHHH
Confidence            777665444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.33  E-value=0.28  Score=36.60  Aligned_cols=133  Identities=10%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             CcEEEEEccCCC---Cceeec--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-ccceeecccccceeEEEEc
Q psy18074         13 FNLYSYDIRQLN---SPLNVH--KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH-SRDIYHTKRMQHVTHTVWS   86 (197)
Q Consensus        13 ~~i~i~d~~~~~---~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~v~~v~~~   86 (197)
                      |.|.+|++....   ..+..+  ....++|++++-- ++ .|+.+. ++.|++|++.... ............+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            889999998620   122222  2447889988765 34 444443 5889999998777 443332222234555544 


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCC-CceeeeeccccccccccccccceecccCccc-ceeeeecCcceEEeecc
Q psy18074         87 LDNKFVISASDEMNLRVWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        87 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~i~~~~  156 (197)
                       .+++++.|+....+.++.... ...+..+.....      ..++.++.|-+++ .++++...+.+.++...
T Consensus       138 -~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  138 -FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             -cccEEEEEEcccCEEEEEEEccCCEEEEEEecCC------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             466999998877788775543 222322221111      1225667776554 44445556677777664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.3  Score=36.26  Aligned_cols=138  Identities=9%  Similarity=0.080  Sum_probs=69.2

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee---ec-ccccce
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY---HT-KRMQHV   80 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~-~~~~~v   80 (197)
                      ++.+--..+.|.-|+..+..  ...+.. .+.+.++..-..+..|+++. .| +++++..++.....+   .. ......
T Consensus        39 L~w~DI~~~~i~r~~~~~g~--~~~~~~-p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGK--KRVFPS-PGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCc--eEEEEC-CCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCC
Confidence            45555556667777776422  233322 23334443333344444432 33 556676555442221   11 112456


Q ss_pred             eEEEEccCCCEEEEEeC---------CCcEEEEEcC-CCceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         81 THTVWSLDNKFVISASD---------EMNLRVWKAH-ASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      +.+...|+|++.++...         ...-.+|.+. .+..+..+..+-        ..-+.++||||++.+........
T Consensus       114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~--------~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL--------TIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE--------EecCceEECCCCCEEEEEeCCCC
Confidence            77888999998775433         0111344444 344333333311        12479999999987776555444


Q ss_pred             EEeec
Q psy18074        151 HIYNA  155 (197)
Q Consensus       151 ~i~~~  155 (197)
                      .||..
T Consensus       186 ~i~r~  190 (307)
T COG3386         186 RIHRY  190 (307)
T ss_pred             eEEEE
Confidence            44443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.26  E-value=0.26  Score=35.45  Aligned_cols=112  Identities=13%  Similarity=0.051  Sum_probs=63.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEE-CCCCccccee-ecccc-cceeEEEEccCCCEEEEEe---CCCcEEEEEcCC
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDKSLRLYL-AHQGHSRDIY-HTKRM-QHVTHTVWSLDNKFVISAS---DEMNLRVWKAHA  108 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~~v~i~d-~~~~~~~~~~-~~~~~-~~v~~v~~~~~~~~l~~~~---~dg~i~vwd~~~  108 (197)
                      ..+....|++++...+....+....++. ...+...... ..... ..|..++++|||..++...   .++.|.+=-+..
T Consensus        66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen   66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            4788889999987777666666666663 3334332221 11111 2799999999999887544   346666654431


Q ss_pred             C-ce-eeeeccccccccccccccceecccCcccceeeeecC
Q psy18074        109 S-EK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus       109 ~-~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      . .. ...+... ..........+..+.|.+++.+++.+..
T Consensus       146 ~~~g~~~~l~~~-~~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  146 DGDGVPRRLTGP-RRVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             CCCCCcceeccc-eEecccccCcceeeeecCCCEEEEEeCC
Confidence            1 11 1111111 0111111234689999999988875443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.25  E-value=0.21  Score=39.60  Aligned_cols=107  Identities=11%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE------------------eCCCcEEEEECCCC
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG------------------GYDKSLRLYLAHQG   66 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~d~~v~i~d~~~~   66 (197)
                      ++++++.+|.++.+|..+ ++.+-.....   ...+..+|  ..++.+                  ..+|.|.-.|+.+|
T Consensus       303 ~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             EEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence            577788899999999987 4544433211   11233344  223221                  24578888899999


Q ss_pred             cccceeeccc-c------cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         67 HSRDIYHTKR-M------QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        67 ~~~~~~~~~~-~------~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      +.+....... .      .....-.....+..++.++.||.++.+|..+|+.+.....
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8777653320 0      0110001112467788889999999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.24  E-value=0.14  Score=41.51  Aligned_cols=97  Identities=15%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             EEEEcCCCcEEEEEccCCCCce--eecccCCCCeEEEEE--CCCCCEEEEEeCCCcEEEEECC-----CCc----cccee
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPL--NVHKDMTSAVTSVDY--SPTGREFVAGGYDKSLRLYLAH-----QGH----SRDIY   72 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~v~i~d~~-----~~~----~~~~~   72 (197)
                      .++.+....+.|||.+. +...  ..+ ...+.|.++.|  .|+++.+++.+....|.+|.-.     ...    .+..+
T Consensus        44 a~V~~~~~~LtIWD~~~-~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   44 AVVDSSRSELTIWDTRS-GVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             EEEECCCCEEEEEEcCC-cEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            34444455689999985 2211  112 34688999999  4688999999999999988642     111    11111


Q ss_pred             -ecccc-cceeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         73 -HTKRM-QHVTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        73 -~~~~~-~~v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                       ...++ .+|....|.++|..++.+  ++.+.|+|-
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence             11222 468899999999876654  356778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.10  E-value=0.04  Score=27.62  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=26.6

Q ss_pred             CCeEEEEECCCC---CEEEEEeCCCcEEEEECCCC
Q psy18074         35 SAVTSVDYSPTG---REFVAGGYDKSLRLYLAHQG   66 (197)
Q Consensus        35 ~~v~~~~~sp~~---~~l~~~~~d~~v~i~d~~~~   66 (197)
                      +.+.++.|+|..   ..|+.+-..+.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   48888888899999999964

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.07  E-value=0.51  Score=39.26  Aligned_cols=74  Identities=12%  Similarity=0.285  Sum_probs=51.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCC-----C-----cc--c-ce-------eecccccceeEEEEccC---CCEE
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-----G-----HS--R-DI-------YHTKRMQHVTHTVWSLD---NKFV   92 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-----~-----~~--~-~~-------~~~~~~~~v~~v~~~~~---~~~l   92 (197)
                      .|..+.+||+|..++..|..| |.|..+..     +     ..  . +.       +...+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            588899999999999888766 44444321     1     11  0 01       11223457899999996   5889


Q ss_pred             EEEeCCCcEEEEEcCCCc
Q psy18074         93 ISASDEMNLRVWKAHASE  110 (197)
Q Consensus        93 ~~~~~dg~i~vwd~~~~~  110 (197)
                      +.-..|+.+++||+...+
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.03  E-value=0.041  Score=27.57  Aligned_cols=30  Identities=10%  Similarity=0.131  Sum_probs=25.5

Q ss_pred             ceeEEEEccCC---CEEEEEeCCCcEEEEEcCC
Q psy18074         79 HVTHTVWSLDN---KFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        79 ~v~~v~~~~~~---~~l~~~~~dg~i~vwd~~~  108 (197)
                      .+.++.|+|+.   .+|+.+-..|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999854   4888888899999999985

It contains a characteristic DLL sequence motif.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.93  E-value=0.56  Score=36.28  Aligned_cols=105  Identities=12%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             CccEEEEE-cCC----CcEEEEEccCCCCcee-ecccCCCCeEEEEECCCCCEEEEEeCC-----------CcEEEEECC
Q psy18074          2 EAFVFTAA-NED----FNLYSYDIRQLNSPLN-VHKDMTSAVTSVDYSPTGREFVAGGYD-----------KSLRLYLAH   64 (197)
Q Consensus         2 ~~~~l~~~-~~d----~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~~v~i~d~~   64 (197)
                      ||+++|-+ +..    ..++++|+.+ +..+. .+..  .....+.|.++++.|+....+           ..|+.|.+.
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            56666543 222    3488899987 33332 2222  112239999998877665432           247788887


Q ss_pred             CCccc--ceeecccccc-eeEEEEccCCCEEEEE-eC--C-CcEEEEEcCCC
Q psy18074         65 QGHSR--DIYHTKRMQH-VTHTVWSLDNKFVISA-SD--E-MNLRVWKAHAS  109 (197)
Q Consensus        65 ~~~~~--~~~~~~~~~~-v~~v~~~~~~~~l~~~-~~--d-g~i~vwd~~~~  109 (197)
                      ++...  ..+....... ...+..++|+++++.. ..  + ..+.+.|+..+
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            76543  2332222233 5678889999998743 22  2 45777788764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.93  E-value=0.16  Score=40.46  Aligned_cols=120  Identities=9%  Similarity=0.030  Sum_probs=68.8

Q ss_pred             cCCCCeEEEEECCC----CCEEEEEeCCCcEEEEECCC-----Ccccceeecccc--c--ceeEEEEccCCCEEEEEeCC
Q psy18074         32 DMTSAVTSVDYSPT----GREFVAGGYDKSLRLYLAHQ-----GHSRDIYHTKRM--Q--HVTHTVWSLDNKFVISASDE   98 (197)
Q Consensus        32 ~~~~~v~~~~~sp~----~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~--~--~v~~v~~~~~~~~l~~~~~d   98 (197)
                      +....|.++.|.|-    ...|++.-....|.+|.+..     ++.+........  -  -.....|+|....|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            34467999999995    22555566678899999862     222111111110  1  12456799998888766555


Q ss_pred             CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc--ceEEeecchh
Q psy18074         99 MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV--PRHIYNAQAE  158 (197)
Q Consensus        99 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~~~~~  158 (197)
                      ..-.+++++.....-...-...       ..|.|-+|..||++|+.+-+.  -.+||+..+.
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~-------G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTS-------GLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCC-------ceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            4444555543222111111111       127899999999988754444  5578876543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.93  E-value=0.11  Score=38.71  Aligned_cols=78  Identities=12%  Similarity=0.147  Sum_probs=51.7

Q ss_pred             EEEEECCCCCEEEEEeC--------C--CcEEEEECCCCcccceeecccccceeEEEEccCCC-EEEEE-eCCCcEEEEE
Q psy18074         38 TSVDYSPTGREFVAGGY--------D--KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-FVISA-SDEMNLRVWK  105 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~--------d--~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~-~~dg~i~vwd  105 (197)
                      .-+++++....|++...        |  ..|.++|+.+++.+..+..+  ..+.+++.+.+.+ +|+.. ..++.+.+||
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            34566665555544221        1  27888899999888777555  4678999999876 45444 4578999999


Q ss_pred             cCCCceeeeecc
Q psy18074        106 AHASEKLGYVNN  117 (197)
Q Consensus       106 ~~~~~~~~~~~~  117 (197)
                      ..+|+.+..+..
T Consensus       319 ~~tGk~~~~~~~  330 (342)
T PF06433_consen  319 AATGKLVRSIEQ  330 (342)
T ss_dssp             TTT--EEEEE--
T ss_pred             CcCCcEEeehhc
Confidence            999998877754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.84  E-value=0.12  Score=36.31  Aligned_cols=69  Identities=10%  Similarity=0.064  Sum_probs=49.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee------ec-------ccccceeEEEEccCCCEEEEEeCCCcEE
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY------HT-------KRMQHVTHTVWSLDNKFVISASDEMNLR  102 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~-------~~~~~v~~v~~~~~~~~l~~~~~dg~i~  102 (197)
                      ++..+.  .++.++++.+.+|.+++||+.+++.....      ..       .....|..+.++.+|.-+++-+ +|..+
T Consensus        14 ~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y   90 (219)
T PF07569_consen   14 PVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSY   90 (219)
T ss_pred             ceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence            444443  46888999999999999999986543221      11       2346788888898888877765 47788


Q ss_pred             EEEcC
Q psy18074        103 VWKAH  107 (197)
Q Consensus       103 vwd~~  107 (197)
                      .|+..
T Consensus        91 ~y~~~   95 (219)
T PF07569_consen   91 SYSPD   95 (219)
T ss_pred             Eeccc
Confidence            88865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.79  E-value=0.66  Score=36.00  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEE
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK  105 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd  105 (197)
                      .+++..++.||+++.++.-..+|.+.+....-.+....+.......+..+.|..++..++.-  ...+.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            46899999999999999989999998887655444444433333566778887765444333  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.17  Score=36.78  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE
Q psy18074         40 VDYSPTGREFVAGGY-----DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~   95 (197)
                      -.|||||.+|+..-+     -|.|-+||.+.+....--...|.-....+.|.+||+.++.+
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence            368999999887543     37899999986543222234555667889999999998865

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.73  E-value=0.58  Score=37.60  Aligned_cols=61  Identities=13%  Similarity=0.005  Sum_probs=38.6

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      |.|.-+|+.+++......... ....+. +.-.+..++.++.+|.++.+|..+|+.+......
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDF-PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCC-CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            346667777777665542221 111111 1224556677888999999999999999877543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.62  E-value=0.51  Score=37.92  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeeccc-CCCCeE----------EEEECCCCCEEEEEeCCCcEEEEECCCCccccee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKD-MTSAVT----------SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~----------~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      ..++.++.++.|+-+|..+ ++.+-.+.. ....+.          .+++  .+..++.++.++.|.-+|..+|+.+...
T Consensus        70 g~vyv~s~~g~v~AlDa~T-Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKT-GKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CEEEEECCCCcEEEEECCC-CceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            3455566678899999887 444433321 111111          1122  2356777888999999999999987765


Q ss_pred             ecccccceeEEEEcc---CCCEEEEEe-----CCCcEEEEEcCCCceeeeecc
Q psy18074         73 HTKRMQHVTHTVWSL---DNKFVISAS-----DEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~---~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      .......-..+.-+|   ++..++..+     .+|.|.-+|..+|+.+..+..
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            322111001111122   344433222     268899999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.46  E-value=0.088  Score=36.99  Aligned_cols=69  Identities=10%  Similarity=0.058  Sum_probs=42.3

Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccc-------cccccceecccCcccceeeeecCcceEEee
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALD-------YSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      +..++.++++.+.+|.+++||+.+++.+.....- ...+.       .....|..+.++.+|.-|++-+.+....|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si-~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSI-APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccH-HHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            4557889999999999999999987765432111 11111       123345666777777666644444444443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.24  E-value=0.81  Score=35.31  Aligned_cols=78  Identities=18%  Similarity=0.123  Sum_probs=49.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc------------------------------------------eee
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD------------------------------------------IYH   73 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~------------------------------------------~~~   73 (197)
                      .|+.+.|+++..-|+++...|.|-+|....+....                                          .+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            46778888887778888888877777543211000                                          001


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGY  114 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  114 (197)
                      ....+.|++++.|.-| +++.|..+|.+.|.|++....+..
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee
Confidence            1125789999887444 778899999999999987776655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.24  E-value=0.39  Score=29.69  Aligned_cols=76  Identities=18%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy18074         37 VTSVDYSP---TG-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL  112 (197)
Q Consensus        37 v~~~~~sp---~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  112 (197)
                      |+++++..   +| ..|++|+.|..|++|+-.  +.+..+..  ...|.+++-... ..++.+-.+|+|-+|+-  ...+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence            45555543   43 578999999999999755  33333322  267788876665 56788888999888874  3445


Q ss_pred             eeecccc
Q psy18074        113 GYVNNKQ  119 (197)
Q Consensus       113 ~~~~~~~  119 (197)
                      .......
T Consensus        75 WRiKSK~   81 (111)
T PF14783_consen   75 WRIKSKN   81 (111)
T ss_pred             eeeccCC
Confidence            5554443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.20  E-value=1  Score=34.39  Aligned_cols=149  Identities=14%  Similarity=0.129  Sum_probs=73.5

Q ss_pred             Cc-cEEEEEcCCCc--EEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          2 EA-FVFTAANEDFN--LYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~-~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      || ++|.++..||.  +++.|+.+  ..+..|.... ....+..++|+.+.++..-....|+-.|+.+.+....+ ....
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~  122 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPD  122 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--T
T ss_pred             CCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCc
Confidence            45 44555555555  55566664  3344454433 22335677898888776666678999999998765444 2233


Q ss_pred             cceeEEEE--ccCCCEEEEEe---C-------------------CCcEEEEEcCCCceeeeeccccccccccccccceec
Q psy18074         78 QHVTHTVW--SLDNKFVISAS---D-------------------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKY  133 (197)
Q Consensus        78 ~~v~~v~~--~~~~~~l~~~~---~-------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  133 (197)
                      ..+-...|  +.++..++..-   .                   .+.|.-.|+.+|+....+..         ..++..+
T Consensus       123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~---------~~wlgH~  193 (386)
T PF14583_consen  123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED---------TDWLGHV  193 (386)
T ss_dssp             TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE---------SS-EEEE
T ss_pred             ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec---------CccccCc
Confidence            44544555  34566655321   1                   12355556666654433322         2345678


Q ss_pred             ccCc-ccceeeeecCc---c--eEEeecchhhHHH
Q psy18074        134 AHHP-QIRRIARHRQV---P--RHIYNAQAEHRAI  162 (197)
Q Consensus       134 ~~s~-~~~~l~~~~~~---~--~~i~~~~~~~~~~  162 (197)
                      .||| |...|+-+..+   .  ..||-+.......
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~  228 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV  228 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence            8888 55666633322   2  3788877655443

>KOG3630|consensus

Probab=95.13  E-value=0.15  Score=43.60  Aligned_cols=129  Identities=12%  Similarity=0.023  Sum_probs=77.8

Q ss_pred             cCCCcEEEEEccCCCCce----eecc------cCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074         10 NEDFNLYSYDIRQLNSPL----NVHK------DMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus        10 ~~d~~i~i~d~~~~~~~~----~~~~------~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +++-.|..||++......    .-+.      .......++.|+|.- ...+....|+.|.+..+........- ..-..
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~  199 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTN  199 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCccc
Confidence            334468889987532111    1111      112346788898863 34566778888888776543221111 12235


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      .+++++|+|.|+.++.|...|++..|-.. ++....+.....    +.+..|.+++|-..-.+++.
T Consensus       200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~----~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV----EENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc----CCCcceeEEEEecceeEEEE
Confidence            78999999999999999999999888653 333333322211    11345778888776666653

>KOG2377|consensus

Probab=95.07  E-value=0.51  Score=36.66  Aligned_cols=123  Identities=10%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCC--cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         38 TSVDYSPTGREFVAGGYDKSLRLYLAHQG--HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      +.+-|....+.+ .+...|.+.-|-+...  .....+.....+.|.++.|++|.+.+|.-..++.|.+++....+.....
T Consensus        26 ngvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            445454333333 3444455666665532  2233333334579999999999999999999999999988543332222


Q ss_pred             ccccccccccccccceecccCcccceeeeecCcceEEeecchhhHHHHhHh
Q psy18074        116 NNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQ  166 (197)
Q Consensus       116 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~  166 (197)
                      ......    -...|..+.|+.+ .-+|.-.+..+.+|.....++..+..+
T Consensus       105 ~~~ck~----k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk  150 (657)
T KOG2377|consen  105 TQECKT----KNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK  150 (657)
T ss_pred             HHHhcc----CcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh
Confidence            111100    0112567888766 667766677888888887777766543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.01  E-value=0.58  Score=37.46  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q psy18074         37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA-SDEMNLRVWKAHA  108 (197)
Q Consensus        37 v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~  108 (197)
                      -.++.|+|....|+.-.....-.+++++.............+.|.|.+|.+||+.|+.+ +..=.-++||-.+
T Consensus       115 pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  115 PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            35778999988877655444334566654333222223444789999999999988754 3344567898653

>PRK10115 protease 2; Provisional

Probab=94.92  E-value=1.5  Score=36.59  Aligned_cols=71  Identities=8%  Similarity=0.055  Sum_probs=47.2

Q ss_pred             CeEEEEECCCCCEEEEEeC-----CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeC-C-----CcEEEE
Q psy18074         36 AVTSVDYSPTGREFVAGGY-----DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASD-E-----MNLRVW  104 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d-----g~i~vw  104 (197)
                      .+..+.|+|++++|+.+..     .-.+++.|+.+|..+......   .-..++|.+|++.|+-... +     ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3677889999998876432     237888999888643322121   1156999999987764432 2     357778


Q ss_pred             EcCCC
Q psy18074        105 KAHAS  109 (197)
Q Consensus       105 d~~~~  109 (197)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            88777

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.90  E-value=0.84  Score=37.72  Aligned_cols=104  Identities=9%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-------------------CceeecccCCCCeEEEEEC--CCCCEEEEEeCCCcEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-------------------SPLNVHKDMTSAVTSVDYS--PTGREFVAGGYDKSLRL   60 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~v~i   60 (197)
                      +..+|+++..||.|.+|......                   +|...+ .....+++++++  ...+.||++++...|.+
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            35688999999999999752100                   011111 224578999998  66778888888888877


Q ss_pred             EECCC--CcccceeecccccceeEEEEccCC---C---EEEEEeCCCcEEEEEc
Q psy18074         61 YLAHQ--GHSRDIYHTKRMQHVTHTVWSLDN---K---FVISASDEMNLRVWKA  106 (197)
Q Consensus        61 ~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~---~---~l~~~~~dg~i~vwd~  106 (197)
                      |-...  .+........+...|.+|+|-++.   .   ++++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            75543  221111111234578888887643   2   6778888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.78  E-value=0.91  Score=31.64  Aligned_cols=137  Identities=12%  Similarity=0.122  Sum_probs=75.8

Q ss_pred             cCCCcEEEEEccC-CCCceeecccCCCCeEEEEECCCCCEEEEEeC---CC---cEEEE---ECC--CCcccc-------
Q psy18074         10 NEDFNLYSYDIRQ-LNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DK---SLRLY---LAH--QGHSRD-------   70 (197)
Q Consensus        10 ~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~---~v~i~---d~~--~~~~~~-------   70 (197)
                      .....|.+|++.. ...+...+.. -+.|..+.++..|.++++--.   ..   .+++|   ...  ....+.       
T Consensus        35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~  113 (215)
T PF14761_consen   35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR  113 (215)
T ss_pred             cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence            4557799999983 2355555644 588999999999999998421   22   55654   222  111111       


Q ss_pred             --------------eeecccccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCce-e---eeeccccccccccccccce
Q psy18074         71 --------------IYHTKRMQHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEK-L---GYVNNKQRQALDYSESLKQ  131 (197)
Q Consensus        71 --------------~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~---~~~~~~~~~~~~~~~~~v~  131 (197)
                                    ....+-...+.+++..| .|+.++. + ++.+.+|.+..... .   ..+... ...+      ..
T Consensus       114 v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~~~~~~~~~lDFe-~~l~------~~  184 (215)
T PF14761_consen  114 VTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQTIQSEKFSFLDFE-RSLI------DH  184 (215)
T ss_pred             cccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEEEecccccEEech-hhhh------he
Confidence                          11111234677888887 4665543 3 56788888753322 1   111111 1111      11


Q ss_pred             ecccCc-----ccceeeeecCcceEEeecc
Q psy18074        132 KYAHHP-----QIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       132 ~~~~s~-----~~~~l~~~~~~~~~i~~~~  156 (197)
                      ...|.|     .+.++|..++..+.++++.
T Consensus       185 ~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  185 IDNFKPTQVAICEGYIAVMSDLEVLVLKLE  214 (215)
T ss_pred             ecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence            222222     4678888887777777653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.77  E-value=0.66  Score=33.60  Aligned_cols=64  Identities=16%  Similarity=0.183  Sum_probs=44.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         44 PTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        44 p~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      ..++.|+.|+.+| +++++..........  .+...|..+...|+-+.++.-+ |+.+.++++..-..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence            3578899998888 999999333222222  1223599999999877777665 49999999875443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2247|consensus

Probab=94.46  E-value=0.0036  Score=48.13  Aligned_cols=129  Identities=11%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      .-++.++.+..+..||-.  ++..... ...+....++|..++..++ .+-..+.+++||+.+......-..+ ...-.-
T Consensus        47 ~nlavaca~tiv~~YD~a--gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-~~s~sl  122 (615)
T KOG2247|consen   47 HNLAVACANTIVIYYDKA--GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-TSSKSL  122 (615)
T ss_pred             CceehhhhhhHHHhhhhh--cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-cchHHH
Confidence            335666666677777765  3333222 2356677888988887654 4667889999999865432221122 122233


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      +.|++.+..++.+...|.+.+++-.+.+.+...-.+.+.        +.++++.+.+..+..
T Consensus       123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR--------gtq~av~lEd~vil~  176 (615)
T KOG2247|consen  123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR--------GTQIAVTLEDYVILC  176 (615)
T ss_pred             HhhccCCccccccccccceEEEeccchhhhhhhcccccc--------eeEEEecccceeeec
Confidence            789999999998889999999987765544333323332        356666666555543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.45  E-value=1.5  Score=32.86  Aligned_cols=148  Identities=9%  Similarity=0.020  Sum_probs=86.0

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceee----cccCCCC-eEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ec-
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNV----HKDMTSA-VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HT-   74 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~-v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~-   74 (197)
                      -|.+-|.||.+....+...++....    +..-..+ +..-.+...+..++..+.+|.|+-.|+.........    .. 
T Consensus       149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~  228 (342)
T PF06433_consen  149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD  228 (342)
T ss_dssp             EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred             ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence            3667788999998888754544322    2111222 223344445667777899999999888755421110    00 


Q ss_pred             ------ccccceeEEEEccCCCEEEEEeC---C-------CcEEEEEcCCCceeeeeccccccccccccccceecccCcc
Q psy18074         75 ------KRMQHVTHTVWSLDNKFVISASD---E-------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ  138 (197)
Q Consensus        75 ------~~~~~v~~v~~~~~~~~l~~~~~---d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  138 (197)
                            -..+.-.-+++++....|+....   +       ..|-++|+.+++.+..+.....         +.++..+.+
T Consensus       229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~---------~~Si~Vsqd  299 (342)
T PF06433_consen  229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP---------IDSIAVSQD  299 (342)
T ss_dssp             HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE---------ESEEEEESS
T ss_pred             cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc---------cceEEEccC
Confidence                  01234455778876655554321   1       1377779999999888765433         467888876


Q ss_pred             cc-eee-e-ecCcceEEeecchhhHH
Q psy18074        139 IR-RIA-R-HRQVPRHIYNAQAEHRA  161 (197)
Q Consensus       139 ~~-~l~-~-~~~~~~~i~~~~~~~~~  161 (197)
                      .+ +|. . ..+..+.+|++...+..
T Consensus       300 ~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  300 DKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             SS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             CCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            65 443 3 33457899999876543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.34  E-value=1.6  Score=32.44  Aligned_cols=140  Identities=9%  Similarity=0.048  Sum_probs=68.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC-CCCcccce--eec-cc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA-HQGHSRDI--YHT-KR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~-~~~~~~~~--~~~-~~   76 (197)
                      ||.+++++.......-||...  ....... .....|..+.|+|++...+. ...|.|++=+. ...+....  ... ..
T Consensus       155 dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~  231 (302)
T PF14870_consen  155 DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETWSEPIIPIKTN  231 (302)
T ss_dssp             TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred             CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccccccccCCcccC
Confidence            678888886655555677642  2232222 23578999999999776654 47888887762 22221111  101 11


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceE
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRH  151 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  151 (197)
                      ...+..++|.+++...++|+. |.+ +.....|+.=.........     ....+.+.|.++.+-++.+.++-+.
T Consensus       232 ~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~-----~~n~~~i~f~~~~~gf~lG~~G~ll  299 (302)
T PF14870_consen  232 GYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENV-----PSNLYRIVFVNPDKGFVLGQDGVLL  299 (302)
T ss_dssp             -S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTS-----SS---EEEEEETTEEEEE-STTEEE
T ss_pred             ceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCC-----CCceEEEEEcCCCceEEECCCcEEE
Confidence            234789999998888776664 433 3344444432222211110     1123567776666767776665443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.23  E-value=1.5  Score=32.86  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCc------EEEEECCC--Ccc--cce-----eeccc-------ccceeEEEEccCCCE
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKS------LRLYLAHQ--GHS--RDI-----YHTKR-------MQHVTHTVWSLDNKF   91 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~------v~i~d~~~--~~~--~~~-----~~~~~-------~~~v~~v~~~~~~~~   91 (197)
                      -+.+.++.+.|++..+++.+.+|.      ++.+++..  +..  +..     +....       ....-++++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            467889999977777777787887      66666543  110  000     00100       014457888788888


Q ss_pred             EEEEeCC------CcEEEEEcCCCceeeeecccccc-------ccccccccceecccCcccceee
Q psy18074         92 VISASDE------MNLRVWKAHASEKLGYVNNKQRQ-------ALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        92 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      +++.-.+      ..|..++.. |..+..+.....-       .-...+.....++++|+|+.|.
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~  162 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF  162 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence            8887777      788888876 6655444211110       1111234568999999999544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.17  E-value=2.6  Score=35.63  Aligned_cols=110  Identities=10%  Similarity=0.016  Sum_probs=65.0

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCC--------CeEEEEEC----------------CCCCEEEEEeCCCcEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS--------AVTSVDYS----------------PTGREFVAGGYDKSLR   59 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~v~~~~~s----------------p~~~~l~~~~~d~~v~   59 (197)
                      ..+..++.++.|+-.|..+. +.+-.+.....        ....+.+.                ..+..++.++.|+.|.
T Consensus       195 g~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44555667788888888773 43333322110        11223331                1244788889999999


Q ss_pred             EEECCCCcccceeecccccce-------------eEEEEcc--CCCEEEEEeC----------CCcEEEEEcCCCceeee
Q psy18074         60 LYLAHQGHSRDIYHTKRMQHV-------------THTVWSL--DNKFVISASD----------EMNLRVWKAHASEKLGY  114 (197)
Q Consensus        60 i~d~~~~~~~~~~~~~~~~~v-------------~~v~~~~--~~~~l~~~~~----------dg~i~vwd~~~~~~~~~  114 (197)
                      -.|..+|+....+...  +.|             ..+.-.|  .+..++.|+.          +|.|+-+|..+|+.+..
T Consensus       274 ALDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999887654221  111             0111122  1334555532          68899999999999887


Q ss_pred             ec
Q psy18074        115 VN  116 (197)
Q Consensus       115 ~~  116 (197)
                      +.
T Consensus       352 ~~  353 (764)
T TIGR03074       352 WD  353 (764)
T ss_pred             Ee
Confidence            65

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.14  E-value=0.56  Score=37.84  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC----Cccccee-ec--------------------ccccceeEEEEcc----CCCEEEE
Q psy18074         44 PTGREFVAGGYDKSLRLYLAHQ----GHSRDIY-HT--------------------KRMQHVTHTVWSL----DNKFVIS   94 (197)
Q Consensus        44 p~~~~l~~~~~d~~v~i~d~~~----~~~~~~~-~~--------------------~~~~~v~~v~~~~----~~~~l~~   94 (197)
                      ++...++.+..||.+.......    +...... ..                    .....+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3567788888888888777654    1111100 00                    0113456666666    6788999


Q ss_pred             EeCCCcEEEEEcCCCceeeee
Q psy18074         95 ASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        95 ~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.98  E-value=2.6  Score=33.62  Aligned_cols=112  Identities=11%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCC--CeEEEEECC--CCCEEEEEe---------CCCcEEEEECCCCcccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS--AVTSVDYSP--TGREFVAGG---------YDKSLRLYLAHQGHSRD   70 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~sp--~~~~l~~~~---------~d~~v~i~d~~~~~~~~   70 (197)
                      ..++.++.++.|+.+|.++ ++.+-.+.....  .-..+.-+|  .+..++.++         .++.++-+|..+|+.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAET-GKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCC-CCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            4566777889999999987 444444332111  001111122  124454443         36789999999998877


Q ss_pred             eeeccccc-------------------ce-eEEEEccCCCEEEEEeCCC------------------cEEEEEcCCCcee
Q psy18074         71 IYHTKRMQ-------------------HV-THTVWSLDNKFVISASDEM------------------NLRVWKAHASEKL  112 (197)
Q Consensus        71 ~~~~~~~~-------------------~v-~~v~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~  112 (197)
                      .+......                   .+ ...++.+.+..++.++.++                  .|.-+|..+|+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            65332110                   01 1234455556666666554                  6899999999998


Q ss_pred             eeec
Q psy18074        113 GYVN  116 (197)
Q Consensus       113 ~~~~  116 (197)
                      ..+.
T Consensus       270 W~~~  273 (488)
T cd00216         270 WFYQ  273 (488)
T ss_pred             EEee
Confidence            8764

The alignment model contains an 8-bladed beta-propeller.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.90  E-value=0.35  Score=23.40  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=18.3

Q ss_pred             cceeEEEEccCCCEEEEE-eCC--CcEEEE
Q psy18074         78 QHVTHTVWSLDNKFVISA-SDE--MNLRVW  104 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~-~~d--g~i~vw  104 (197)
                      ..-....|+|||++|+.. ..+  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            456788999999998844 444  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4499|consensus

Probab=93.72  E-value=1.8  Score=30.82  Aligned_cols=95  Identities=5%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             CCeEEEEECCCCCEEE-EEeCCCcEEEEE--CCCCcccce---eecc-----cccceeEEEEccCCCEEEEEeCCCcEEE
Q psy18074         35 SAVTSVDYSPTGREFV-AGGYDKSLRLYL--AHQGHSRDI---YHTK-----RMQHVTHTVWSLDNKFVISASDEMNLRV  103 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~-~~~~d~~v~i~d--~~~~~~~~~---~~~~-----~~~~v~~v~~~~~~~~l~~~~~dg~i~v  103 (197)
                      +--..++|+.+...++ +-+.+-.|.-||  ..+|.....   +...     .....-.++...+|++.++.-..++|.-
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            3446788988777665 445566775566  555543211   1000     1122334555667888888888889999


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCc
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      .|+.+|+.+..+.-....        ++++||-.
T Consensus       238 ~dp~tGK~L~eiklPt~q--------itsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPTPQ--------ITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEcCCCc--------eEEEEecC
Confidence            999999998877665544        67888854

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.63  E-value=1  Score=34.74  Aligned_cols=76  Identities=16%  Similarity=0.033  Sum_probs=49.5

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-c------ccccceeEEEEcc-----CC---CEEEEE
Q psy18074         31 KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-T------KRMQHVTHTVWSL-----DN---KFVISA   95 (197)
Q Consensus        31 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~------~~~~~v~~v~~~~-----~~---~~l~~~   95 (197)
                      ....++|++++.| +=-+++.|..+|.+.+.|++....+.... .      .....++++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3346889999997 55678889999999999998655433211 1      1234677888863     22   356788


Q ss_pred             eCCCcEEEEEcC
Q psy18074         96 SDEMNLRVWKAH  107 (197)
Q Consensus        96 ~~dg~i~vwd~~  107 (197)
                      +..|.+.+|.+.
T Consensus       162 Tn~G~v~~fkIl  173 (395)
T PF08596_consen  162 TNSGNVLTFKIL  173 (395)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCCEEEEEEe
Confidence            999999999775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.44  E-value=3.2  Score=33.00  Aligned_cols=42  Identities=7%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             cceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         78 QHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        78 ~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      -.++++.+.+ ++.+++++..-..|...|..+++....+..+.
T Consensus       271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            3588999988 66777777777789999988888887776543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.37  E-value=0.72  Score=37.21  Aligned_cols=69  Identities=14%  Similarity=0.094  Sum_probs=41.6

Q ss_pred             CccEEEEEcCCCcEEEEEccC---CCCceee-----------ccc-----------CCCCeEEEEECC----CCCEEEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ---LNSPLNV-----------HKD-----------MTSAVTSVDYSP----TGREFVAG   52 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~---~~~~~~~-----------~~~-----------~~~~v~~~~~sp----~~~~l~~~   52 (197)
                      +...++.+..||.+.......   .+.....           +.+           ..+.+..+++++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455677777888887776653   1111111           110           013456667766    66788999


Q ss_pred             eCCCcEEEEECCCCcccc
Q psy18074         53 GYDKSLRLYLAHQGHSRD   70 (197)
Q Consensus        53 ~~d~~v~i~d~~~~~~~~   70 (197)
                      +.|+.+++||+.++.++.
T Consensus       237 ~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             ETTSEEEEEETTTTCEEE
T ss_pred             eCCCeEEEEECCCCeEEE
Confidence            999999999999998843

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.36  E-value=1.3  Score=28.36  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             EEEEEcCCCcEEEEEccCCC-------CceeecccCCCCeEEEEECC---C--CCEEEEEeCCCcEEEEECCCCccccee
Q psy18074          5 VFTAANEDFNLYSYDIRQLN-------SPLNVHKDMTSAVTSVDYSP---T--GREFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~sp---~--~~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      .|++++..++|.+++.....       ..+..+ .....|++++-.+   +  ...|+.|+ ...+..||+..+.-+.. 
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fy-   88 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFY-   88 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhh-
Confidence            57788888999999976321       223333 3356677776543   2  34566655 55688999987764333 


Q ss_pred             ecccccceeEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         73 HTKRMQHVTHTVWSL----DNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                       ..-...|+++.+-.    +..+++.| .+..|.-||....+..++.
T Consensus        89 -ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   89 -KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             -hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence             33336777777643    23344444 4566777776554444443

>KOG2377|consensus

Probab=93.36  E-value=3.1  Score=32.60  Aligned_cols=121  Identities=12%  Similarity=0.170  Sum_probs=70.0

Q ss_pred             CcEEEEEccCC--CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee---cccccceeEEEEcc
Q psy18074         13 FNLYSYDIRQL--NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH---TKRMQHVTHTVWSL   87 (197)
Q Consensus        13 ~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~   87 (197)
                      |.+.=|-....  .-+...-....++|.++.||+|.+.++.--.+..|.+++...........   ......|...+|+.
T Consensus        43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~  122 (657)
T KOG2377|consen   43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS  122 (657)
T ss_pred             CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence            34444544322  23333334456899999999999999999999999999885433222221   11224588888976


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCcccceee
Q psy18074         88 DNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        88 ~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      + .-+|..+..| +.+|-...... +.....+.        ..|.-..|.++-+.+.
T Consensus       123 s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~--------~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  123 S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN--------LNVNWYMYCPETAVIL  169 (657)
T ss_pred             C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc--------cCccEEEEccccceEe
Confidence            5 5556555555 55665443222 11111111        2255667777766554

>PHA02713 hypothetical protein; Provisional

Probab=93.33  E-value=0.52  Score=38.16  Aligned_cols=61  Identities=10%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCC------CcEEEEECCC-Ccc--cceeecccccceeEEEEccCCCEEEEEeCCC--cEEEEEcCC
Q psy18074         45 TGREFVAGGYD------KSLRLYLAHQ-GHS--RDIYHTKRMQHVTHTVWSLDNKFVISASDEM--NLRVWKAHA  108 (197)
Q Consensus        45 ~~~~l~~~~~d------~~v~i~d~~~-~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~vwd~~~  108 (197)
                      ++..++.|+.+      ..+..||..+ ++-  ...+.. .......+.+  +|+..+.|+.++  .+..||+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            56666677654      2466788886 332  222211 1122222222  677778888887  455555544

>KOG4441|consensus

Probab=93.01  E-value=3.8  Score=33.47  Aligned_cols=102  Identities=18%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             CccEEEEEcCC------CcEEEEEccCCCCceeecccC---CCCeEEEEECCCCCEEEEEeCCC-----cEEEEECCCCc
Q psy18074          2 EAFVFTAANED------FNLYSYDIRQLNSPLNVHKDM---TSAVTSVDYSPTGREFVAGGYDK-----SLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~-----~v~i~d~~~~~   67 (197)
                      ++.++++|+.|      ..+..||... .+ +..+...   ........+  +|...+.|+.||     .+-.||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~-~~-W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRT-NQ-WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCC-Cc-eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc
Confidence            57889999998      3467788875 22 3332221   122222222  678888898886     56677777654


Q ss_pred             cccee-ecccccceeEEEEccCCCEEEEEeCCC------cEEEEEcCCC
Q psy18074         68 SRDIY-HTKRMQHVTHTVWSLDNKFVISASDEM------NLRVWKAHAS  109 (197)
Q Consensus        68 ~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg------~i~vwd~~~~  109 (197)
                      -.... ..........+.  -+|...+.|+.++      .+..||..++
T Consensus       408 W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  408 WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            22211 011112222222  2577777777554      3667777654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.99  E-value=1.1  Score=26.51  Aligned_cols=41  Identities=17%  Similarity=0.091  Sum_probs=27.8

Q ss_pred             eCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE
Q psy18074         53 GYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        53 ~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~   95 (197)
                      ..+|.+.-||..+++....+..-  ...+.|++++|+.+++.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-TTSSEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC--CccCeEEEcCCCCEEEEE
Confidence            34678888999988765444222  478999999999987754

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.72  E-value=3  Score=33.20  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=74.0

Q ss_pred             EEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC--------CEEEEEeCCCcEEEEECCC-Ccccceeecccc
Q psy18074          7 TAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG--------REFVAGGYDKSLRLYLAHQ-GHSRDIYHTKRM   77 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--------~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~   77 (197)
                      ..|+.-..++-.|+.. ++.+.....|...  -+.|.|..        +.|+ |-.+..|+--|.+- |..+......  
T Consensus       484 ~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esK--  557 (776)
T COG5167         484 LDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESK--  557 (776)
T ss_pred             ecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeeh--
Confidence            3355555566666654 5666666555444  45667642        2333 43444455456543 3222221111  


Q ss_pred             cceeEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEe
Q psy18074         78 QHVTHTVWS----LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus        78 ~~v~~v~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                      ..++--.|+    ...-|++.++..|.|++||--.-+....+++-..        .|-.+..+.+|.+|.+.....+.+-
T Consensus       558 dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--------aIk~idvta~Gk~ilaTCk~yllL~  629 (776)
T COG5167         558 DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--------AIKHIDVTANGKHILATCKNYLLLT  629 (776)
T ss_pred             hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc--------ceeeeEeecCCcEEEEeecceEEEE
Confidence            222222222    3455899999999999999754433333332222        2567888899998887666666555


Q ss_pred             ecc
Q psy18074        154 NAQ  156 (197)
Q Consensus       154 ~~~  156 (197)
                      ++.
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.55  E-value=4.5  Score=32.24  Aligned_cols=141  Identities=13%  Similarity=-0.007  Sum_probs=62.7

Q ss_pred             CccEEEEE---cCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc--
Q psy18074          2 EAFVFTAA---NEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR--   76 (197)
Q Consensus         2 ~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--   76 (197)
                      ++.+++..   .......++|..  +.....+.........+..-++|.+++...  ..+..+|+. |+.........  
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~~--G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~  188 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDNN--GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY  188 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEETT--S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred             CcEEEEeCCCCCCCceEEEECCC--ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence            34455555   334456666665  443333322111111156677888776554  677778876 44433331111  


Q ss_pred             ccceeEEEEccCCCEEEEEeC-------------CCcEEEEEcCCCceeeeecccccc---c----------------cc
Q psy18074         77 MQHVTHTVWSLDNKFVISASD-------------EMNLRVWKAHASEKLGYVNNKQRQ---A----------------LD  124 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~---~----------------~~  124 (197)
                      ...-..+...|+|++|+.+..             ...|..+| .+|+.+..+.....-   .                -.
T Consensus       189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~  267 (477)
T PF05935_consen  189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG  267 (477)
T ss_dssp             E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred             cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence            112356677899999886661             12355566 666666554321110   0                00


Q ss_pred             cccccceecccCc-ccceeeeecCc
Q psy18074        125 YSESLKQKYAHHP-QIRRIARHRQV  148 (197)
Q Consensus       125 ~~~~~v~~~~~s~-~~~~l~~~~~~  148 (197)
                      .+-.-++++.+.+ ++..|+++++.
T Consensus       268 ~DW~H~Nsi~yd~~dd~iivSsR~~  292 (477)
T PF05935_consen  268 RDWLHINSIDYDPSDDSIIVSSRHQ  292 (477)
T ss_dssp             SBS--EEEEEEETTTTEEEEEETTT
T ss_pred             CCccccCccEEeCCCCeEEEEcCcc
Confidence            0011367788877 67777777755

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.35  E-value=4.3  Score=31.61  Aligned_cols=38  Identities=29%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      +++..++.||+|+++|.-..+|.+.+....-.+....+
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            57999999999999999899999988876544444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.32  E-value=0.71  Score=22.52  Aligned_cols=31  Identities=10%  Similarity=0.068  Sum_probs=22.5

Q ss_pred             cCCCEEEE-EeCCCcEEEEEcCCCceeeeecc
Q psy18074         87 LDNKFVIS-ASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        87 ~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      |++++|+. ...++.|.++|+.+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            56776664 44578999999988877766554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02713 hypothetical protein; Provisional

Probab=92.25  E-value=2.9  Score=34.02  Aligned_cols=50  Identities=12%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             CccEEEEEcCCC-----cEEEEEccCCCCceeecccCC---CCeEEEEECCCCCEEEEEeCC
Q psy18074          2 EAFVFTAANEDF-----NLYSYDIRQLNSPLNVHKDMT---SAVTSVDYSPTGREFVAGGYD   55 (197)
Q Consensus         2 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d   55 (197)
                      +|.+++.|+.++     .+..||+.+ . ....+....   .....+.+  ++..++.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~-~-~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGD-D-KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCC-C-eEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence            678888888764     377899874 2 233322211   11222223  56666777654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.18  E-value=0.72  Score=22.26  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CC--CcEEEE
Q psy18074         33 MTSAVTSVDYSPTGREFVAGG-YD--KSLRLY   61 (197)
Q Consensus        33 ~~~~v~~~~~sp~~~~l~~~~-~d--~~v~i~   61 (197)
                      ..+.-....|||||+.|+.++ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345678899999999887654 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.10  E-value=0.77  Score=22.39  Aligned_cols=40  Identities=5%  Similarity=-0.035  Sum_probs=25.5

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074         44 PTGREFVAGG-YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus        44 p~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      |+++.|+++. .++.|.++|..++..+.....+  .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence            5677666554 5789999999887766555333  33344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.03  E-value=3.5  Score=29.87  Aligned_cols=131  Identities=8%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee---c-ccccceeEEEEc
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH---T-KRMQHVTHTVWS   86 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---~-~~~~~v~~v~~~   86 (197)
                      .++...+||..+. +.+..+. ..+.=+.++.  ++..|+.+.....++++|..+-+....+.   . .....++.+-|-
T Consensus       108 k~~~~f~yd~~tl-~~~~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  108 KEGTGFVYDPNTL-KKIGTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             SSSEEEEEETTTT-EEEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             cCCeEEEEccccc-eEEEEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            4677888998863 5555553 2455567764  67888888778889999987655444331   1 112456677775


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-------cccccccccceecccCccc-ceeeeec
Q psy18074         87 LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-------QALDYSESLKQKYAHHPQI-RRIARHR  146 (197)
Q Consensus        87 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~-~~l~~~~  146 (197)
                       +|...|-.-....|...|..+|.....+....-       ..-....+..+.++|.|.. +++++|-
T Consensus       184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence             677777677778899999999988776532110       0001113456899998854 4445654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.96  E-value=4.3  Score=31.00  Aligned_cols=111  Identities=13%  Similarity=0.033  Sum_probs=60.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC--CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM--TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +.+++. ..+|.|..+|..+. ..+.....-  ...+.+-.+..+|. ++.++.++.++.+|.++|+............+
T Consensus        69 g~v~~~-~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          69 GTVYVG-TRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CeEEEe-cCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            344444 67788888888763 322211111  11222222222555 77788888999999988988777633310011


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      .....-.++ .+...+.++.+.-.+..+|........
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEec
Confidence            111122223 333444678888888888887666443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.83  E-value=3.3  Score=31.18  Aligned_cols=51  Identities=16%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce---e---ecccccceeEEEEccC
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI---Y---HTKRMQHVTHTVWSLD   88 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~---~---~~~~~~~v~~v~~~~~   88 (197)
                      ..+.|+|.|+|..|++ ...|.|++++ ..+.....   .   ..........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4578999999877665 5699999999 44433111   1   1223457789999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2247|consensus

Probab=91.50  E-value=0.081  Score=41.12  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      ++.+...+.+++||+.+.....-.+ +....-.-+.|++-+..++.+...|.+.+++..+.+..... ..|...+.+++|
T Consensus        90 avlAek~~piylwd~n~eytqqLE~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av  167 (615)
T KOG2247|consen   90 AVLAEKTGPIYLWDVNSEYTQQLES-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAV  167 (615)
T ss_pred             hhhhhcCCCeeechhhhhhHHHHhc-cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEe
Confidence            3445567889999997522111111 22223334789998888899999999999999887765553 337788999999


Q ss_pred             ccCCCEEEE
Q psy18074         86 SLDNKFVIS   94 (197)
Q Consensus        86 ~~~~~~l~~   94 (197)
                      .+.+..+..
T Consensus       168 ~lEd~vil~  176 (615)
T KOG2247|consen  168 TLEDYVILC  176 (615)
T ss_pred             cccceeeec
Confidence            998765543

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=91.27  E-value=3.1  Score=35.46  Aligned_cols=88  Identities=17%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCC-----cEEEEECCCCcc-cceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDK-----SLRLYLAHQGHS-RDIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~-----~v~i~d~~~~~~-~~~~~~~   75 (197)
                      +++.......+.|.+-|... ..+...-..+..++...+|||||+.|+. .+..+     .|++-++.+... +..+...
T Consensus       319 tkiAfv~~~~~~L~~~D~dG-~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve  397 (912)
T TIGR02171       319 AKLAFRNDVTGNLAYIDYTK-GASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE  397 (912)
T ss_pred             eeEEEEEcCCCeEEEEecCC-CCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc
Confidence            34455554445788888774 2333331355788999999999999987 44333     588889876432 2222111


Q ss_pred             cccceeEEEEccCCCEE
Q psy18074         76 RMQHVTHTVWSLDNKFV   92 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l   92 (197)
                       ...|..-....+|..+
T Consensus       398 -~aaiprwrv~e~gdt~  413 (912)
T TIGR02171       398 -NAAIPRWRVLENGDTV  413 (912)
T ss_pred             -cccccceEecCCCCeE
Confidence             2334444445555543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PHA03098 kelch-like protein; Provisional

Probab=91.21  E-value=2.7  Score=33.86  Aligned_cols=102  Identities=10%  Similarity=0.230  Sum_probs=48.2

Q ss_pred             CccEEEEEcCC------CcEEEEEccCCCCceeecccC---CCCeEEEEECCCCCEEEEEeCC--------CcEEEEECC
Q psy18074          2 EAFVFTAANED------FNLYSYDIRQLNSPLNVHKDM---TSAVTSVDYSPTGREFVAGGYD--------KSLRLYLAH   64 (197)
Q Consensus         2 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d--------~~v~i~d~~   64 (197)
                      ++.+++.|+.+      ..+..||+.+ . ....+...   ......+..  ++..++.|+.+        ..+..||..
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNT-N-KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCC-C-eeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCC
Confidence            46777777632      3577888864 2 22222111   111122222  45566666543        237888887


Q ss_pred             CCcccceeeccc-ccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q psy18074         65 QGHSRDIYHTKR-MQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHAS  109 (197)
Q Consensus        65 ~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~  109 (197)
                      ++.-........ ......+.+  +++.++.|+.+     +.+.+||+.+.
T Consensus       465 ~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        465 TNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            654322110111 111122222  56666666654     35666666543

>PHA03098 kelch-like protein; Provisional

Probab=91.20  E-value=6.5  Score=31.70  Aligned_cols=102  Identities=8%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCCCceeecccC---CCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCc
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLNSPLNVHKDM---TSAVTSVDYSPTGREFVAGGYD------KSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d------~~v~i~d~~~~~   67 (197)
                      ++.+++.|+.+     ..+..||+.+ . ........   ......+.+  ++..++.|+.+      ..+..||..++.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGE-S-KWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCC-C-ceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56778888765     3466788764 2 22222111   111112222  45666666632      357888887654


Q ss_pred             ccce--eecccccceeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCc
Q psy18074         68 SRDI--YHTKRMQHVTHTVWSLDNKFVISASDE--------MNLRVWKAHASE  110 (197)
Q Consensus        68 ~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~vwd~~~~~  110 (197)
                      -...  +..++ ... +. ...++...+.|+.+        ..+..||..+++
T Consensus       418 W~~~~~~p~~r-~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        418 WSKGSPLPISH-YGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             eeecCCCCccc-cCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            2211  11111 111 12 22345555666542        237778876543

>KOG3630|consensus

Probab=91.02  E-value=0.75  Score=39.75  Aligned_cols=86  Identities=17%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             EEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC--cccceeecccccceeEEEE
Q psy18074          8 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG--HSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus         8 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~v~~v~~   85 (197)
                      +...|+.|.+..+......+..+ ......++++|+|.|..++.|-..|.+.-|...--  ..+..........|.+|+|
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence            34445556555544222222222 23457899999999999999999999988865421  1111111112367999999


Q ss_pred             ccCCCEEEE
Q psy18074         86 SLDNKFVIS   94 (197)
Q Consensus        86 ~~~~~~l~~   94 (197)
                      -....++++
T Consensus       252 l~t~eflvv  260 (1405)
T KOG3630|consen  252 LSTQEFLVV  260 (1405)
T ss_pred             ecceeEEEE
Confidence            877666664

>KOG4499|consensus

Probab=90.91  E-value=3.8  Score=29.20  Aligned_cols=48  Identities=10%  Similarity=0.038  Sum_probs=38.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEcc
Q psy18074         39 SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL   87 (197)
Q Consensus        39 ~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~   87 (197)
                      .++...+|..+++.-..++|..+|..+|+.+..+..+ ...++++||-.
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence            4455667888888888999999999999988777443 57899999954

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.90  E-value=1.3  Score=34.42  Aligned_cols=43  Identities=2%  Similarity=-0.079  Sum_probs=36.6

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      ..+.+++.+|++++.++.+.=|.|.++|+.++..+..+++-..
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            4578899999999999888889999999999988887776543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.85  E-value=4.8  Score=29.20  Aligned_cols=109  Identities=11%  Similarity=0.025  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDK--SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL  112 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  112 (197)
                      ....++.|..+|..+-+.+.-|  .|+.+|+.+++............--.++... ++.....-.++...+||..+-+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            4567888866777777776655  8889999999876554333222333444432 333345567899999999988888


Q ss_pred             eeeccccccccccccccceecccCcccceee-eecCcceEEeec
Q psy18074        113 GYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNA  155 (197)
Q Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~  155 (197)
                      ..+......         ..++  .|++.|. +.....+.+++.
T Consensus       124 ~~~~y~~EG---------WGLt--~dg~~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen  124 GTFPYPGEG---------WGLT--SDGKRLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             EEEE-SSS-----------EEE--ECSSCEEEE-SSSEEEEE-T
T ss_pred             EEEecCCcc---------eEEE--cCCCEEEEECCccceEEECC
Confidence            777654322         3444  4555554 333334455553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.84  E-value=5.3  Score=29.70  Aligned_cols=126  Identities=9%  Similarity=-0.001  Sum_probs=60.3

Q ss_pred             EEccCCCCceee-cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEe
Q psy18074         18 YDIRQLNSPLNV-HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS   96 (197)
Q Consensus        18 ~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~   96 (197)
                      |-..+.+..... .....+.+..+.-+++|.++++++....+.-|+--... -..........+..+.|.|++...+.+ 
T Consensus       127 y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-  204 (302)
T PF14870_consen  127 YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-  204 (302)
T ss_dssp             EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-
T ss_pred             EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-
Confidence            333443444443 33445678888889999988877655555556643221 111112234689999999998876654 


Q ss_pred             CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc
Q psy18074         97 DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV  148 (197)
Q Consensus        97 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  148 (197)
                      ..|.|+.=+...  ....+...... +......+..++|.+++...|++..+
T Consensus       205 ~Gg~~~~s~~~~--~~~~w~~~~~~-~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  205 RGGQIQFSDDPD--DGETWSEPIIP-IKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             TTTEEEEEE-TT--EEEEE---B-T-TSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             CCcEEEEccCCC--CccccccccCC-cccCceeeEEEEecCCCCEEEEeCCc
Confidence            778777766211  11122211100 00111225678999888888776655

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.69  E-value=5.2  Score=29.30  Aligned_cols=105  Identities=8%  Similarity=0.005  Sum_probs=59.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-eccc-ccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKR-MQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~-~~~   79 (197)
                      ||.+..++...+.|--.|..+ ++....-.+.......+...|||..-++-+.. -|.-+|-++.+..... ...| ...
T Consensus        72 dG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~n  149 (353)
T COG4257          72 DGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADAN  149 (353)
T ss_pred             CCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCc
Confidence            455556666666666666665 33333223444556677788888766664433 3444565555433222 1222 245


Q ss_pred             eeEEEEccCCCEEEEEeC---------CCcEEEEEcCC
Q psy18074         80 VTHTVWSLDNKFVISASD---------EMNLRVWKAHA  108 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~---------dg~i~vwd~~~  108 (197)
                      .....|.+.|++.+++..         .+.|++|+...
T Consensus       150 let~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq  187 (353)
T COG4257         150 LETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ  187 (353)
T ss_pred             ccceeeCCCccEEEeeccccceecCcccCceeeeccCC
Confidence            678889999999888742         24466666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.52  E-value=5.4  Score=33.51  Aligned_cols=81  Identities=9%  Similarity=0.010  Sum_probs=47.8

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCC--C--------ce--eeeecccccccc-ccccccceecccCcc----cc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHA--S--------EK--LGYVNNKQRQAL-DYSESLKQKYAHHPQ----IR  140 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~--~--------~~--~~~~~~~~~~~~-~~~~~~v~~~~~s~~----~~  140 (197)
                      -.|..+.++|+|++++..+..|. .|-.+..  |        +.  .+....-....+ ......|..+.|+|.    ..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            46889999999999998887664 4443321  1        11  111100000111 111335788999985    34


Q ss_pred             eeeeecCcceEEeecchhh
Q psy18074        141 RIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       141 ~l~~~~~~~~~i~~~~~~~  159 (197)
                      .++-.+++.+.+|+....+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            5556778899999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916|consensus

Probab=90.19  E-value=0.32  Score=40.85  Aligned_cols=58  Identities=17%  Similarity=0.191  Sum_probs=38.5

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEE-----------EECCCCCEEEEEeCCCcEEEEECC
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSV-----------DYSPTGREFVAGGYDKSLRLYLAH   64 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~-----------~~sp~~~~l~~~~~d~~v~i~d~~   64 (197)
                      ++..+-.++.+++.+...  .....+..|...+..+           .+||||+.|+.+..||.+.+|.+.
T Consensus       197 ~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            455566778888876653  1223344454433332           369999999999999998888763

>PRK13684 Ycf48-like protein; Provisional

Probab=90.00  E-value=6.8  Score=29.58  Aligned_cols=109  Identities=10%  Similarity=-0.014  Sum_probs=58.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL  112 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  112 (197)
                      .+.+.++.+.|++..++++ ..|.++. ....+ +........-...++.+.+.++++.++.+ ..|.+.+=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4578899999987665554 4564543 22222 22222222333678899999999877665 4566543223333322


Q ss_pred             eeeccccccccccccccceecccCcccceeeeecCcc
Q psy18074        113 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP  149 (197)
Q Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  149 (197)
                      .........    ....+..+.+.+++..++.+..+.
T Consensus       249 ~~~~~~~~~----~~~~l~~v~~~~~~~~~~~G~~G~  281 (334)
T PRK13684        249 SKPIIPEIT----NGYGYLDLAYRTPGEIWAGGGNGT  281 (334)
T ss_pred             ccccCCccc----cccceeeEEEcCCCCEEEEcCCCe
Confidence            211111000    001145677888888777776553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.80  E-value=11  Score=31.62  Aligned_cols=113  Identities=6%  Similarity=0.042  Sum_probs=65.0

Q ss_pred             eEEEEECC--CCCEEEEEeCCCcEEEEECCC-------C----c-------ccceeecccccceeEEEEc--cCCCEEEE
Q psy18074         37 VTSVDYSP--TGREFVAGGYDKSLRLYLAHQ-------G----H-------SRDIYHTKRMQHVTHTVWS--LDNKFVIS   94 (197)
Q Consensus        37 v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~-------~----~-------~~~~~~~~~~~~v~~v~~~--~~~~~l~~   94 (197)
                      |..+....  ....|+.+..||.|.+|.+..       .    .       ....+.......+++++++  ...++||.
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            45554433  235678889999999997631       0    0       0011222223678999998  78889999


Q ss_pred             EeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCccc-----c-eee-eecCcceEEeec
Q psy18074         95 ASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQI-----R-RIA-RHRQVPRHIYNA  155 (197)
Q Consensus        95 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~-~~~~~~~~i~~~  155 (197)
                      ++....|.||-..... .......+.      +...|.+++|-++.     . +|+ +.-.+.+.+|+.
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQ------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccc------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9888888888654321 111111101      22336778876532     2 454 444556766665

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916|consensus

Probab=89.70  E-value=0.36  Score=40.61  Aligned_cols=92  Identities=17%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             CcEEEEEccCC-CCc-----eeecccCCCCeEEEEECC---CCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE-
Q psy18074         13 FNLYSYDIRQL-NSP-----LNVHKDMTSAVTSVDYSP---TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH-   82 (197)
Q Consensus        13 ~~i~i~d~~~~-~~~-----~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~-   82 (197)
                      |.+.+||+.-. ++.     +.........+.-+.|.|   +..++..+-.++.+++.+......  .+..+|...+.. 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence            56778887521 211     122222334556666766   444555666778888877654322  111223322222 


Q ss_pred             ----------EEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         83 ----------TVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        83 ----------v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                                -..+|||..++..+.||.+++|.+
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence                      236899999999999999888864

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.70  E-value=8.8  Score=30.39  Aligned_cols=58  Identities=7%  Similarity=0.022  Sum_probs=38.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce-----e-ecccccceeEEEEccCC
Q psy18074         32 DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI-----Y-HTKRMQHVTHTVWSLDN   89 (197)
Q Consensus        32 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~-----~-~~~~~~~v~~v~~~~~~   89 (197)
                      ..-...+.|+|.|+|..|++--..|.|++++..++.....     . ..........++++|+-
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3345678999999998777655569999987654432111     1 11124678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.65  E-value=7.2  Score=30.74  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             ccEEEEEcCCCcEEEE-EccCCCCc----eeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          3 AFVFTAANEDFNLYSY-DIRQLNSP----LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~-d~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      |.-+.+++.||.|.-| |.+..+.+    ++.+.-...++..+.-..+.+-+++-+.+|.+..+.....+.+...  .--
T Consensus       280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~  357 (733)
T COG4590         280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAY  357 (733)
T ss_pred             ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhh
Confidence            5567788889988765 66543332    1222222234444433333456777788888888776554432221  112


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      ..+..+++||.+.++++- +.|.++++.+.+..+
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             cCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence            356778999999998764 467799998876544

>KOG4460|consensus

Probab=89.56  E-value=4.7  Score=32.24  Aligned_cols=84  Identities=11%  Similarity=-0.007  Sum_probs=48.9

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEE-----cC----CCcee--eeeccccccccccc-cccceecccCccc----ce
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWK-----AH----ASEKL--GYVNNKQRQALDYS-ESLKQKYAHHPQI----RR  141 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd-----~~----~~~~~--~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~  141 (197)
                      -.|..+..++.|..++..+.+|.+..+=     ..    .|+..  +...+-....+... .-.+...+|+|+.    ..
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3577888999999999888888654332     11    22221  11111111111111 1135677899965    55


Q ss_pred             eeeecCcceEEeecchhhHH
Q psy18074        142 IARHRQVPRHIYNAQAEHRA  161 (197)
Q Consensus       142 l~~~~~~~~~i~~~~~~~~~  161 (197)
                      ++-.++..+.+|+.......
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            55677788899998776554

>KOG4441|consensus

Probab=89.53  E-value=10  Score=31.02  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=56.3

Q ss_pred             CccEEEEEcCCCc-----EEEEEccCCCCceeecccC---CCCeEEEEECCCCCEEEEEeCCC------cEEEEECCCCc
Q psy18074          2 EAFVFTAANEDFN-----LYSYDIRQLNSPLNVHKDM---TSAVTSVDYSPTGREFVAGGYDK------SLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~------~v~i~d~~~~~   67 (197)
                      +|.++|+|+.||.     +..||..+  .........   ........+  +|...++|+.++      .+..||..++.
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCC--CcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            6889999999966     56688764  222222212   222223333  677777877554      67788887764


Q ss_pred             cc--ceeecccccceeEEEEccCCCEEEEEeCCCc-----EEEEEcCCCc
Q psy18074         68 SR--DIYHTKRMQHVTHTVWSLDNKFVISASDEMN-----LRVWKAHASE  110 (197)
Q Consensus        68 ~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-----i~vwd~~~~~  110 (197)
                      -.  ..+.... ... .++. -++...+.|+.|+.     +..||..+.+
T Consensus       456 W~~~~~M~~~R-~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  456 WTLIAPMNTRR-SGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             eeecCCccccc-ccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            32  2222211 111 1222 25666777777763     6667776543

>KOG1897|consensus

Probab=89.19  E-value=11  Score=32.55  Aligned_cols=102  Identities=14%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC--CCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA--HQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~--~~~~~~~~~~~~~~~~   79 (197)
                      +|+++|+-  +..|++|+..+ .+.++.-..+..++..+...-.|..++.|.--+.+.+...  ..|........-+..+
T Consensus       839 ngkllA~I--n~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W  915 (1096)
T KOG1897|consen  839 NGKLLAGI--NQSVRLYEWTT-ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW  915 (1096)
T ss_pred             CCeEEEec--CcEEEEEEccc-cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence            56666665  45899999986 4556666678889999999889999999988887776544  4444544443445567


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      .+.+.+-.+.. .+.+..+|.+++....
T Consensus       916 mtaveil~~d~-ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  916 MTAVEILDDDT-YLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eeeEEEecCce-EEeecccccEEEEEec
Confidence            77777754444 4555667777776554

>KOG2280|consensus

Probab=89.10  E-value=6.9  Score=32.65  Aligned_cols=48  Identities=13%  Similarity=0.148  Sum_probs=34.9

Q ss_pred             EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q psy18074         15 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus        15 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      |+||+..  ++++..+.-..+.+..+.|+. ...|++...+|.+++|++..
T Consensus        66 I~If~~s--G~lL~~~~w~~~~lI~mgWs~-~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   66 IRIFNIS--GQLLGRILWKHGELIGMGWSD-DEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             EEEEecc--ccchHHHHhcCCCeeeecccC-CceEEEEeccceEEEeecch
Confidence            5666665  555555544455888999985 56677889999999999873

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.19  E-value=9.9  Score=29.09  Aligned_cols=106  Identities=14%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEECCC--Cccc--ceeecccccceeEEEEccCCCEEEEEeCC
Q psy18074         35 SAVTSVDYSPTGREFVAGG-----------YDK-SLRLYLAHQ--GHSR--DIYHTKRMQHVTHTVWSLDNKFVISASDE   98 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~-----------~d~-~v~i~d~~~--~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~d   98 (197)
                      .....++|.++|+.+++-.           ..+ .|.+++-.+  |...  ..+.. .......+++.++| .++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence            3457889999999777643           223 677766543  3321  22222 22456889999988 444 3433


Q ss_pred             CcEEEEEcCCC-----ceeeeeccccccccccccccceecccCcccceeee
Q psy18074         99 MNLRVWKAHAS-----EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        99 g~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      ...++.|....     +....+..-.... .........+.|.|||.+.++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQI-NNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCC-CcccccccCceECCCCCEEEe
Confidence            33333344321     1111111110000 001122568889999876553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.99  E-value=11  Score=29.52  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             CCcEEEEEccCCCCceeecccCC-C-CeEEEEE--CCCCCE-EEEEeCCCcEEEEEC-CCCcc--cceeecc--------
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMT-S-AVTSVDY--SPTGRE-FVAGGYDKSLRLYLA-HQGHS--RDIYHTK--------   75 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~-~-~v~~~~~--sp~~~~-l~~~~~d~~v~i~d~-~~~~~--~~~~~~~--------   75 (197)
                      ...+++||+.+ .+.++++.--. + ....+.|  .|+..+ ++.+.-..+|..|-- ..+.-  ..+...+        
T Consensus       221 G~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  221 GHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             --EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             cCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            46799999987 56666664322 2 3456666  444443 333444556666544 33221  1111000        


Q ss_pred             ----------cccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q psy18074         76 ----------RMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHAS  109 (197)
Q Consensus        76 ----------~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~  109 (197)
                                -..-|+.+..|.|+++|. +.-.+|.|+.||+...
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                      024578999999999987 5567999999999753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=87.40  E-value=13  Score=29.76  Aligned_cols=59  Identities=7%  Similarity=0.113  Sum_probs=30.9

Q ss_pred             CccEEEEEcCCC---cEEEEEccCCCCceeecccCC---CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDF---NLYSYDIRQLNSPLNVHKDMT---SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~   67 (197)
                      +|.+++.|+.++   .+..||+.+  ..........   .....+.+  ++..++.|   |.+..||..++.
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~  426 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNT  426 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCC--CEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCc
Confidence            677888887654   366788764  2232221111   11122222  45555555   346778887654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.25  E-value=18  Score=30.91  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCe-------------EEEEECC--CCCEEEEEeC----------CCcE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAV-------------TSVDYSP--TGREFVAGGY----------DKSL   58 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v-------------~~~~~sp--~~~~l~~~~~----------d~~v   58 (197)
                      ..++.++.|+.+.-.|..+ ++.+..+.. .+.+             ..+.-.|  .+..+++|+.          +|.|
T Consensus       261 ~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       261 RRIILPTSDARLIALDADT-GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CEEEEecCCCeEEEEECCC-CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            3566777899999999887 455544321 1111             1111222  2345555542          6889


Q ss_pred             EEEECCCCcccceeecccc----------------cce-eEEEEccCCCEEEEEe------------------CCCcEEE
Q psy18074         59 RLYLAHQGHSRDIYHTKRM----------------QHV-THTVWSLDNKFVISAS------------------DEMNLRV  103 (197)
Q Consensus        59 ~i~d~~~~~~~~~~~~~~~----------------~~v-~~v~~~~~~~~l~~~~------------------~dg~i~v  103 (197)
                      +-+|..+|+.+..+...+.                ..+ ...++++....++.+.                  ..+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            9999999998877643210                011 2234444433433211                  2345777


Q ss_pred             EEcCCCceeeeecc
Q psy18074        104 WKAHASEKLGYVNN  117 (197)
Q Consensus       104 wd~~~~~~~~~~~~  117 (197)
                      .|..+|+....++.
T Consensus       419 LD~~TGk~~W~~Q~  432 (764)
T TIGR03074       419 LDATTGKERWVFQT  432 (764)
T ss_pred             EeCCCCceEEEecc
Confidence            78888888877765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=86.84  E-value=2  Score=19.59  Aligned_cols=24  Identities=25%  Similarity=0.108  Sum_probs=19.5

Q ss_pred             EEEEEeCCCcEEEEEcCCCceeee
Q psy18074         91 FVISASDEMNLRVWKAHASEKLGY  114 (197)
Q Consensus        91 ~l~~~~~dg~i~vwd~~~~~~~~~  114 (197)
                      .++.++.+|.+..+|..+|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            567778899999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.81  E-value=19  Score=30.77  Aligned_cols=83  Identities=6%  Similarity=0.034  Sum_probs=51.2

Q ss_pred             cceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCc----eeeeeccccccccccc---cccceecccCcccceeeeecCcc
Q psy18074         78 QHVTHTVWSLD-NKFVISASDEMNLRVWKAHASE----KLGYVNNKQRQALDYS---ESLKQKYAHHPQIRRIARHRQVP  149 (197)
Q Consensus        78 ~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~  149 (197)
                      .....++|+|. .+.||..+..|...||++....    ....+.......+..+   -+....+.|.++...|+......
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            46678999994 5678899999999999992111    1111111111111011   12344677888877777766777


Q ss_pred             eEEeecchhhH
Q psy18074        150 RHIYNAQAEHR  160 (197)
Q Consensus       150 ~~i~~~~~~~~  160 (197)
                      +.++++.....
T Consensus       226 l~~~d~~~~~~  236 (765)
T PF10214_consen  226 LMLIDFESNWQ  236 (765)
T ss_pred             eEEEECCCCCc
Confidence            78888775544

These proteins are found in fungi.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.69  E-value=5.1  Score=28.06  Aligned_cols=109  Identities=8%  Similarity=0.123  Sum_probs=60.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCc--ccceeecccccceeEEEEccCCCEEEEEeCCC------cEEEE---EcC--CCceee
Q psy18074         47 REFVAGGYDKSLRLYLAHQGH--SRDIYHTKRMQHVTHTVWSLDNKFVISASDEM------NLRVW---KAH--ASEKLG  113 (197)
Q Consensus        47 ~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg------~i~vw---d~~--~~~~~~  113 (197)
                      ..|+.+.....|.+|++....  ....+.+-  +.|..+.++..|.|+++.-.+.      .+++|   +..  ...++.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            334333556789999998433  33344332  7899999999999999874432      45554   222  112222


Q ss_pred             -eecccc------------ccccccc-cccceecccCc-ccceeeeecCcceEEeecchh
Q psy18074        114 -YVNNKQ------------RQALDYS-ESLKQKYAHHP-QIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       114 -~~~~~~------------~~~~~~~-~~~v~~~~~s~-~~~~l~~~~~~~~~i~~~~~~  158 (197)
                       .+.++.            -..+... ...+.+++..| .|+.+ .+.++.+.||.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGCGNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEcCCEEEEEEEEEE
Confidence             222211            0111111 22456777777 55555 455677788877544

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.61  E-value=4.9  Score=23.86  Aligned_cols=46  Identities=9%  Similarity=-0.058  Sum_probs=27.5

Q ss_pred             eCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         96 SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        96 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      ..+|.+.-||..+++....+.+-.-         .+.+++++|+..+..+.....
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~f---------pNGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYF---------PNGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESS---------EEEEEE-TTSSEEEEEEGGGT
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCc---------cCeEEEcCCCCEEEEEeccCc
Confidence            3456788888888765433332221         378999999998876554433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.36  E-value=3.9  Score=32.62  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH   64 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~   64 (197)
                      +..++|+|+..|.|++||.-. ......+++....|..+..+.+|.++++.+ ...+-+-|+.
T Consensus       572 esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            456889999999999999653 233445667777899999999999876544 3445555554

>KOG1897|consensus

Probab=85.57  E-value=24  Score=30.76  Aligned_cols=148  Identities=12%  Similarity=0.067  Sum_probs=75.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC--CC----EEEEEeCCCcEEEEE-CCCCcccceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT--GR----EFVAGGYDKSLRLYL-AHQGHSRDIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~--~~----~l~~~~~d~~v~i~d-~~~~~~~~~~~~~   75 (197)
                      ...++.++.++.+...++...+-....-...+..|.|+.++|-  ++    .++.|.-+..+.+-- ..+.........+
T Consensus       499 ~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~  578 (1096)
T KOG1897|consen  499 ASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS  578 (1096)
T ss_pred             ceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC
Confidence            3455666666666666666432111122234578999999974  22    566676555444332 2222222211111


Q ss_pred             c---ccceeEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeccccccccccccccceecccCc-ccceeeeecCcc
Q psy18074         76 R---MQHVTHTVWSLDNKFVISASDEMNLRVWKAH--ASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHRQVP  149 (197)
Q Consensus        76 ~---~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~  149 (197)
                      .   ...+--..+-.|..+|+++..||.+.-+-+.  ++..-..-..+-+      ..++.-..|+. ..+.+.+.++.|
T Consensus       579 ~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG------t~P~~Lr~f~sk~~t~vfa~sdrP  652 (1096)
T KOG1897|consen  579 GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG------TQPISLRTFSSKSRTAVFALSDRP  652 (1096)
T ss_pred             CCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC------CCCcEEEEEeeCCceEEEEeCCCC
Confidence            1   1234445565668899999999987766544  3332111100000      01123334543 455666777777


Q ss_pred             eEEeecc
Q psy18074        150 RHIYNAQ  156 (197)
Q Consensus       150 ~~i~~~~  156 (197)
                      ..+|...
T Consensus       653 ~viY~~n  659 (1096)
T KOG1897|consen  653 TVIYSSN  659 (1096)
T ss_pred             EEEEecC
Confidence            7777653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.46  E-value=3.9  Score=30.82  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc---eeecccCCCCeEEEEECCCCCEEEEEeCCCcEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP---LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLR   59 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~   59 (197)
                      +|.+|++.-..+.|....+...+..   ...+......+..+++.|||..+++...+|.|+
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            5678888877778888887643221   122334445899999999999988888888775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1898|consensus

Probab=84.61  E-value=27  Score=30.67  Aligned_cols=88  Identities=14%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CCCcEEEEEccCCCCceeecccC--CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc-ccceeEEEEcc
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDM--TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR-MQHVTHTVWSL   87 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~   87 (197)
                      .+|.++.|++-..+..+..+...  .+++.  +..|...++++ +....+++||+-...+++.....+ ...|..+++. 
T Consensus       910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~-  985 (1205)
T KOG1898|consen  910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY-  985 (1205)
T ss_pred             CCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec-
Confidence            35668888875434444444322  33444  45665555554 446789999998777665543332 3567777663 


Q ss_pred             CCCEEEEEeCCCcEEE
Q psy18074         88 DNKFVISASDEMNLRV  103 (197)
Q Consensus        88 ~~~~l~~~~~dg~i~v  103 (197)
                       +..++.|.....+..
T Consensus       986 -~~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen  986 -GARIVVGDIQESVHF 1000 (1205)
T ss_pred             -ceEEEEeeccceEEE
Confidence             455666655444443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.21  E-value=15  Score=27.41  Aligned_cols=64  Identities=13%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             CccEEEEEcC-----CCcEEEEEccCCCCceeecccCC--CCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCc
Q psy18074          2 EAFVFTAANE-----DFNLYSYDIRQLNSPLNVHKDMT--SAVTSVDYSPTGREFVAGGYDK----SLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~----~v~i~d~~~~~   67 (197)
                      ++.+++.|+.     ...+..||+.+  .....+....  ......+...++..++.|+.++    .+..||..+..
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLET--QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCC--CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4667777764     23577888874  2233332111  1111122223566677777653    35678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.17  E-value=15  Score=27.16  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             cEEEEEccCCCCceeec-ccCCCCeEEEEECCCCCEEEEEe------CCCcEEEEECCCCcccceee---cccccceeEE
Q psy18074         14 NLYSYDIRQLNSPLNVH-KDMTSAVTSVDYSPTGREFVAGG------YDKSLRLYLAHQGHSRDIYH---TKRMQHVTHT   83 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~---~~~~~~v~~v   83 (197)
                      .|++||... .+ ...+ .+-.+.|..+.|..+.+.++.|.      ....+..||..+..-.....   ..-.++|..+
T Consensus        17 ~lC~yd~~~-~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   17 GLCLYDTDN-SQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             EEEEEECCC-CE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            489999874 23 3333 34567899999986666666653      35577889988664322211   0112567777


Q ss_pred             EEcc-CC-CEEEEEe-C--CCcEEEEEcC
Q psy18074         84 VWSL-DN-KFVISAS-D--EMNLRVWKAH  107 (197)
Q Consensus        84 ~~~~-~~-~~l~~~~-~--dg~i~vwd~~  107 (197)
                      .+.. |+ +..+.|. .  +..|..||-.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCC
Confidence            6643 33 3443332 2  3346666543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=83.43  E-value=16  Score=27.22  Aligned_cols=106  Identities=9%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCCC--ceeecccCCC---CeEEEEECCCCCEEEEEeC-----CCcEEEEECCCC
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLNS--PLNVHKDMTS---AVTSVDYSPTGREFVAGGY-----DKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~-----d~~v~i~d~~~~   66 (197)
                      ++.+++.|+.+     ..+..||+....-  ....+.....   ......+  ++..++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45666777654     2466677764211  0122211111   1122222  4556666663     236788888765


Q ss_pred             cccceeecccccceeEEEEccCCCEEEEEeCCC----cEEEEEcCCC
Q psy18074         67 HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM----NLRVWKAHAS  109 (197)
Q Consensus        67 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg----~i~vwd~~~~  109 (197)
                      +-...............+...+++..+.|+.++    .+..||+.+.
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            422111011001111122233566667776553    2456777654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.41  E-value=16  Score=27.15  Aligned_cols=40  Identities=13%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      .+++|...++|.+|+++..-..|.+.|..+|+.+..+.+.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            4788888889999999999999999999999999988766

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.38  E-value=20  Score=28.22  Aligned_cols=116  Identities=13%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             cEEEE-EcCCCcEEEEEccCC-CC--ceeeccc---CC----CCeEEEEECCCCCEEEEE--e----CCCcEEEEECCCC
Q psy18074          4 FVFTA-ANEDFNLYSYDIRQL-NS--PLNVHKD---MT----SAVTSVDYSPTGREFVAG--G----YDKSLRLYLAHQG   66 (197)
Q Consensus         4 ~~l~~-~~~d~~i~i~d~~~~-~~--~~~~~~~---~~----~~v~~~~~sp~~~~l~~~--~----~d~~v~i~d~~~~   66 (197)
                      ++|++ |-.++.|+++|..+. .+  ..+.+..   +.    .....+-.-|+|..++++  +    .-|.+.++|-.+-
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            34444 557889999998732 12  2222221   11    122233345788888774  2    2246777777654


Q ss_pred             cccceeec--ccccceeEEEEccCCCEEEEEe--------------------CCCcEEEEEcCCCceeeeecccc
Q psy18074         67 HSRDIYHT--KRMQHVTHTVWSLDNKFVISAS--------------------DEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        67 ~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      +.......  +....-...-|.|..+.++|+.                    ....+.+||+.+.+.++++.-..
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            44333222  1123446677788888888753                    24579999999999998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=83.02  E-value=27  Score=29.43  Aligned_cols=68  Identities=9%  Similarity=0.004  Sum_probs=39.1

Q ss_pred             EEEEECCCCCEEEEEeCC------CcEEEEECCCCc--ccceeeccccccee-EEEEccCCCEEEEEe---CCCcEEEEE
Q psy18074         38 TSVDYSPTGREFVAGGYD------KSLRLYLAHQGH--SRDIYHTKRMQHVT-HTVWSLDNKFVISAS---DEMNLRVWK  105 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~d------~~v~i~d~~~~~--~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~---~dg~i~vwd  105 (197)
                      ..++|++|+..|+....+      ..|+.+++.++.  -...+... ..... .+..+.++++++..+   .++.+.+++
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence            569999999877655432      367888888773  22333221 12222 233344788766332   345688888


Q ss_pred             c
Q psy18074        106 A  106 (197)
Q Consensus       106 ~  106 (197)
                      .
T Consensus       254 ~  254 (686)
T PRK10115        254 A  254 (686)
T ss_pred             C
Confidence            4

>PRK13684 Ycf48-like protein; Provisional

Probab=82.46  E-value=19  Score=27.23  Aligned_cols=113  Identities=8%  Similarity=-0.032  Sum_probs=61.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc---cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK---RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE  110 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~  110 (197)
                      ...+.++.+.|+++.++++ ..|.+.+-....|........+   ....+..+.+.|++..++.+ .+|.+. .....++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC
Confidence            4578899999988876654 4565543233444332211111   12357788999988766554 466554 3334344


Q ss_pred             eeeeeccccccccccccccceecccCcccceeeeecCcceEEee
Q psy18074        111 KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      .-.........     ......+.|..+++.++.|..+.+.-++
T Consensus       291 tW~~~~~~~~~-----~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEV-----PSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCC-----CcceEEEEEeCCCceEEECCCceEEEec
Confidence            32222110100     0113566676777778887766665553

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=82.14  E-value=3.4  Score=18.35  Aligned_cols=24  Identities=13%  Similarity=0.155  Sum_probs=14.0

Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEE
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRV  103 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~v  103 (197)
                      ...++.+++|+.+++=+....|.+
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEE
Confidence            456666666666665555555544

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.98  E-value=12  Score=29.51  Aligned_cols=152  Identities=12%  Similarity=0.036  Sum_probs=77.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec-ccCCC----CeE-EEEECCCCCEEEEEeCCCcEEEE-ECCCCcccceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH-KDMTS----AVT-SVDYSPTGREFVAGGYDKSLRLY-LAHQGHSRDIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~----~v~-~~~~sp~~~~l~~~~~d~~v~i~-d~~~~~~~~~~~~   74 (197)
                      ||+.+..-+. ..+.++++.+..-..+.+ ....+    .|+ .+..-.-|..+..++.||.|.-| |.+.+......+.
T Consensus       231 dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~  309 (733)
T COG4590         231 DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI  309 (733)
T ss_pred             CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceee
Confidence            5666666554 568888876422222222 22122    111 11111235567778889988876 5554332111100


Q ss_pred             ----ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         75 ----KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        75 ----~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                          -....+..+.-..+-+.+++-+..|++.++...+.+.+-.-..-+         ....+++||.+.+++.-..+.+
T Consensus       310 R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~---------~~~~~~~Sp~~~~Ll~e~~gki  380 (733)
T COG4590         310 RNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ---------APQLVAMSPNQAYLLSEDQGKI  380 (733)
T ss_pred             eccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc---------CcceeeeCcccchheeecCCce
Confidence                000222222111223456666777777776654433321111111         2357789999999988777788


Q ss_pred             EEeecchhhHHHH
Q psy18074        151 HIYNAQAEHRAIR  163 (197)
Q Consensus       151 ~i~~~~~~~~~~~  163 (197)
                      .++.+....-+..
T Consensus       381 ~~~~l~Nr~Peis  393 (733)
T COG4590         381 RLAQLENRNPEIS  393 (733)
T ss_pred             EEEEecCCCCCcc
Confidence            8887766554443

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.65  E-value=4.4  Score=19.41  Aligned_cols=28  Identities=14%  Similarity=0.054  Sum_probs=22.7

Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         92 VISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        92 l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      ++.++.+|.++-.|..+|+.+..+....
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            4566889999999999999988776543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=81.64  E-value=20  Score=26.93  Aligned_cols=47  Identities=9%  Similarity=0.136  Sum_probs=35.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE
Q psy18074         45 TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        45 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~   95 (197)
                      +|+..++-+..|.+.-+|..+|.........  +....++|.  |++++.|
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vp--G~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP--GFTRGLAFA--GDFAFVG  258 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECC--CCCccccee--CCEEEEE
Confidence            5777777778889999998888765554333  577888887  8887765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.13  E-value=24  Score=27.52  Aligned_cols=111  Identities=6%  Similarity=-0.014  Sum_probs=61.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc--eee---cc-cccceeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD--IYH---TK-RMQHVTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~---~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      ...++++.+.+++..++++ .+|.+. +....+....  .+.   .. ....+..+.|.+++..+++| ..|.+.... .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence            4568899999988877665 455554 3344443111  111   11 11358889998887766554 567655442 3


Q ss_pred             CCceeeeeccccccccccccccceecccCcccceeeeecCcceEEe
Q psy18074        108 ASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                      .|+.-.........     ....+.+.|.++++.++.+.++.+.-|
T Consensus       356 ~G~tW~~~~~~~~~-----~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNI-----AANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCC-----CcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            34332222111100     112468888888888888877654433

>KOG1520|consensus

Probab=80.59  E-value=24  Score=27.14  Aligned_cols=27  Identities=7%  Similarity=0.027  Sum_probs=18.3

Q ss_pred             ceecccCcccceeeeecCcc---eEEeecc
Q psy18074        130 KQKYAHHPQIRRIARHRQVP---RHIYNAQ  156 (197)
Q Consensus       130 v~~~~~s~~~~~l~~~~~~~---~~i~~~~  156 (197)
                      .+.++.|||+.++..+....   ..+|-..
T Consensus       221 ~NGlaLS~d~sfvl~~Et~~~ri~rywi~g  250 (376)
T KOG1520|consen  221 PNGLALSPDGSFVLVAETTTARIKRYWIKG  250 (376)
T ss_pred             cccccCCCCCCEEEEEeeccceeeeeEecC
Confidence            47889999999988665442   2555443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=80.15  E-value=23  Score=26.65  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=32.4

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEe
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGG   53 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~   53 (197)
                      .||++.++-+..|.+..+|..++. .++.   ...+...+++|.  |.+++++.
T Consensus       211 hdgrLwvldsgtGev~~vD~~~G~~e~Va---~vpG~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       211 YQGKLWLLNSGRGELGYVDPQAGKFQPVA---FLPGFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             eCCeEEEEECCCCEEEEEcCCCCcEEEEE---ECCCCCccccee--CCEEEEEe
Confidence            367888888888888888886422 2232   234567788886  77776653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=80.03  E-value=22  Score=26.32  Aligned_cols=105  Identities=10%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC-------------------CCCeEEEEECC---CCCEEEEEeCCC-cEE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM-------------------TSAVTSVDYSP---TGREFVAGGYDK-SLR   59 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------~~~v~~~~~sp---~~~~l~~~~~d~-~v~   59 (197)
                      +..+++=...+-|.+||+.+ ++..+.+..+                   ...+.+++.+|   +++.|+.....+ .++
T Consensus        78 ~~aYItD~~~~glIV~dl~~-~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly  156 (287)
T PF03022_consen   78 GFAYITDSGGPGLIVYDLAT-GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLY  156 (287)
T ss_dssp             EEEEEEETTTCEEEEEETTT-TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEE
T ss_pred             eEEEEeCCCcCcEEEEEccC-CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEE
Confidence            45666666667789999876 3333332221                   12356666655   556666655433 222


Q ss_pred             EEEC---CCCcc---c---cee-eccc-ccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         60 LYLA---HQGHS---R---DIY-HTKR-MQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        60 i~d~---~~~~~---~---~~~-~~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      --..   ++...   .   ..+ ..+. ......++++++|...++--..+.|..|+..+
T Consensus       157 ~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  157 RVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             EEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             EEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence            2221   11111   0   000 1111 13556788889999888888899999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		3e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-04

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    A   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 26  TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 85  SASDDKTLKIWDVSSGKCL 103

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 103
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 104 SASDDKTLKIWDVSSGKCL 122

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 105
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 106 SASDDKTLKIWDVSSGKCL 124

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 88  SASDDKTLKIWDVSSGKCL 106

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 85  SASDDKTLKIWDVSSGKCL 103

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 40  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 98
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 99  SASDDKTLKIWDVSSGKCL 117

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 85  SASDDKTLKIWDVSSGKCL 103

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 88  SASDDKTLKIWDVSSGKCL 106

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 82  SASDDKTLKIWDVSSGKCL 100

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 81
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 82  SASDDKTLKIWDVSSGKCL 100

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 24  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 82
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 83  SASDDKTLKIWDVSSGKCL 101

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 19  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 77
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 78  SASDDKTLKIWDVSSGKCL 96

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 87
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 88  SASDDKTLKIWDVSSGKCL 106

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 85  SASDDKTLKIWDVSSGKCL 103

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 86
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 87  SASDDKTLKIWDVSSGKCL 105

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 84
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 85  SASDDKTLKIWDVSSGKCL 103

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
           T AV+SV +SP G    +   DK ++++ A+ G         ++  ++   WS D+  ++
Sbjct: 22  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLV 80
Query: 94  SASDEMNLRVWKAHASEKL 112
           SASD+  L++W   + + L
Sbjct: 81  SASDDKTLKIWDVSSGKCL 99

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT------VWSL 87
           T  V SV Y+P G  F + G D ++ LY    G    ++    +++V H+       WS 
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 88  DNKFVISASDEMNLRVW 104
           D   + SAS +  +++W
Sbjct: 250 DGTKIASASADKTIKIW 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2pm7_B	297	Protein transport protein SEC13, protein transport	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.86
3jro_A	753	Fusion protein of protein transport protein SEC13	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.85
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.67
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.67
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.67
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.67
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.67
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.61
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.61
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.59
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.59
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.58
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.57
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.57
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.56
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.51
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.5
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.39
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.35
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.3
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.28
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.27
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.26
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.26
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.21
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.19
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.16
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.16
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.14
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.1
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.09
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.07
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.03
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.03
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.01
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.94
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.86
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.85
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.82
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.82
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.81
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.77
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.72
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.23
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.21
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.04
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.01
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.96
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.81
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.67
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.65
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.39
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.21
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.01
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.99
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.93
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.88
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.84
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.73
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.55
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.51
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.42
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.41
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.11
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.02
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.76
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.73
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.48
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.38
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.87
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.68
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.6
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.29
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.93
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.49
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.2
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	90.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.68
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.54
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.39
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.87
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	87.3
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.41
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	84.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	82.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.99
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.7

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=9.7e-28  Score=175.88  Aligned_cols=145  Identities=15%  Similarity=0.231  Sum_probs=129.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++||+++ ++.+..+.+|..+|.+++|+|++.+|++++.|+.|++||++++.....+ .+|...|
T Consensus       174 pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v  251 (321)
T 3ow8_A          174 PDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWV  251 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCCSSCE
T ss_pred             CCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCCCCce
Confidence            3788999999999999999987 5778888999999999999999999999999999999999988776655 6788899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeec
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNA  155 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~  155 (197)
                      .+++|+|++++|++++.|+.|++||+.+++.+..+..+...        |.+++|+|++++|++++ ++.+.+|+.
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~--------v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ--------VWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc--------EEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            99999999999999999999999999999988888766543        78999999999888665 458899985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=173.79  Aligned_cols=151  Identities=11%  Similarity=0.204  Sum_probs=132.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++||+.. +.....+..+...+.+++|+|++.+|++++.|+.|++||+.++..+..+ .+|...|
T Consensus       132 pdg~~l~~g~~dg~v~i~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~-~~h~~~v  209 (321)
T 3ow8_A          132 PDSQYLATGTHVGKVNIFGVES-GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPI  209 (321)
T ss_dssp             TTSSEEEEECTTSEEEEEETTT-CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCC
T ss_pred             CCCCEEEEEcCCCcEEEEEcCC-CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cccCCce
Confidence            3688999999999999999987 5667778888899999999999999999999999999999999877665 5677899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .+++|+|++++|++++.|+.|++||+++++....+.++...        |.+++|+|++.+|++++ +..+.+|++...+
T Consensus       210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW--------VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC--------EEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc--------eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence            99999999999999999999999999998888777666543        78999999999998766 4589999987654


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       282 ~~  283 (321)
T 3ow8_A          282 CV  283 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.6e-26  Score=170.51  Aligned_cols=144  Identities=17%  Similarity=0.279  Sum_probs=125.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-cccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-TKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~v   80 (197)
                      ++.++++|+.|+.|++||++. +.+...+.+|...|.+++|+|++..|++++.|+.|++||++++..+..+. ..+...|
T Consensus       195 ~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          195 DTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            678999999999999999987 57788889999999999999999999999999999999999887655542 2233579


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      .+++|+|+|+++++|+.|+.|++||+.+++.+..+.+|..        .|.+++|+|+|.+|++++. ..+.||+
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--------~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999888877766654        3789999999999997764 5789995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=1.1e-26  Score=173.93  Aligned_cols=153  Identities=16%  Similarity=0.270  Sum_probs=127.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK------   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------   75 (197)
                      ++++|++|+.|+.|++||++....++..+.+|.+.|.+++|+|++..|++++.|+.|++||++++..+..+...      
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            67899999999999999998545778889999999999999999999999999999999999998876655221      


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      +...|.+++|+|+|+++++|+.||.|++||+.+++.+..+...    ...|...|.+++|+|+|.+|++++. ..+.||+
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            1235899999999999999999999999999988877655221    1123345899999999999998774 5889999


Q ss_pred             cchh
Q psy18074        155 AQAE  158 (197)
Q Consensus       155 ~~~~  158 (197)
                      +...
T Consensus       373 ~~~~  376 (380)
T 3iz6_a          373 FSGH  376 (380)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            8654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=1.2e-26  Score=168.75  Aligned_cols=148  Identities=9%  Similarity=0.105  Sum_probs=127.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.++++|+.|+.|++||+.+ +..+..+..|..+|.+++|+|++..|++|+.|+.|++||+.+++.+..+ .+|...|
T Consensus        23 p~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v  100 (304)
T 2ynn_A           23 PTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYI  100 (304)
T ss_dssp             SSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcE
Confidence            4789999999999999999987 5678888899999999999999999999999999999999999877665 5688999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCc-ccceeeeec-CcceEEeecch
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .+++|+|++++|++++.|+.|++||+.++.. ...+.++..        .|.+++|+| ++..|++++ +..+.+|++..
T Consensus       101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~--------~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--------FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS--------CEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC--------cEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999999999999999987744 344544443        478999999 678888665 55899999864


Q ss_pred             h
Q psy18074        158 E  158 (197)
Q Consensus       158 ~  158 (197)
                      .
T Consensus       173 ~  173 (304)
T 2ynn_A          173 S  173 (304)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=2e-26  Score=174.15  Aligned_cols=148  Identities=12%  Similarity=0.171  Sum_probs=131.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+|++|+.|+.|++||+.+ +.....+.+|...|.+++|+|++..|++|+.|+.|++||+.++.++..+ .+|...|.
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~  196 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVS  196 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEE
Confidence            678999999999999999987 5778889999999999999999999999999999999999988876665 56888999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +++|+|+++++++++.|+.|++||+.++..+..+.++..        .+.+++|+|++.+|++++ +..+.+|+....+
T Consensus       197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--------~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--------WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--------cEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            999999999999999999999999999998888776654        378999999999998766 5589999986543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=7.2e-26  Score=164.67  Aligned_cols=151  Identities=14%  Similarity=0.242  Sum_probs=129.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.+|++|+.|+.|++||++........+.+|...|.+++|+| ++..|++|+.|+.|++||+.++.....+..+|...+
T Consensus       108 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v  187 (304)
T 2ynn_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV  187 (304)
T ss_dssp             SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCE
T ss_pred             CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcE
Confidence            6789999999999999999864455677889999999999999 578999999999999999988776666656666789


Q ss_pred             eEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         81 THTVWSL--DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      ..++|+|  ++++|++++.|+.|++||+.+++.+..+.++...        |.+++|+|++.+|++++ ++.+.+|+...
T Consensus       188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN--------VSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC--------EEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC--------EEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999987  6789999999999999999999988888776654        78999999999998766 45899999876


Q ss_pred             hhH
Q psy18074        158 EHR  160 (197)
Q Consensus       158 ~~~  160 (197)
                      .+.
T Consensus       260 ~~~  262 (304)
T 2ynn_A          260 YKV  262 (304)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=5.8e-26  Score=168.52  Aligned_cols=144  Identities=17%  Similarity=0.304  Sum_probs=124.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-ccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-KRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v   80 (197)
                      ++.+|++|+.|+.|++||+++ +.++..+..|...|.+++|+|++..|++++.|+.|++||++.+.....+.. .+...+
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence            468999999999999999987 577888899999999999999999999999999999999998876554422 223578


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      .+++|+|++++|++++.|+.|++||+.+++.+..+.+|..        .|.+++|+|+|++|++++. +.+.+|+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--------~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--------RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999999988877766654        3789999999999997765 4788884

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=4.3e-26  Score=168.62  Aligned_cols=150  Identities=11%  Similarity=0.113  Sum_probs=124.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccceee-ccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIYH-TKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~   78 (197)
                      .+|.+|++|+.|+.|++||+.+ +.++..+.+|.+.|.+++|+|++. .|++++.|+.|++||+++++....+. ..+..
T Consensus       137 pdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  215 (344)
T 4gqb_B          137 SSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY  215 (344)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred             CCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec
Confidence            3789999999999999999987 678889999999999999999885 78899999999999999988766552 33446


Q ss_pred             ceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeec-CcceEEeec
Q psy18074         79 HVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QVPRHIYNA  155 (197)
Q Consensus        79 ~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~~~i~~~  155 (197)
                      .+.+++|+|+ ++++++|+.||.|++||+++++.+..+.++...        |.+++|+|++ ++|++++ +..+.||+.
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~--------v~~v~fsp~g~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC--------VTGLVFSPHSVPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC--------EEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC--------EEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence            7899999995 578889999999999999999988888766554        7899999998 5677665 568999998


Q ss_pred             chhh
Q psy18074        156 QAEH  159 (197)
Q Consensus       156 ~~~~  159 (197)
                      ...+
T Consensus       288 ~~~~  291 (344)
T 4gqb_B          288 SLSE  291 (344)
T ss_dssp             TCCE
T ss_pred             CCCc
Confidence            6553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.6e-26  Score=170.64  Aligned_cols=149  Identities=17%  Similarity=0.220  Sum_probs=127.2

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ..+++++.|+.|++||+.+ +.+...+.+|.+.|.+++|+|++..+++++.|+.|++||++++.....+ .+|...|.++
T Consensus       155 ~~l~s~s~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v  232 (340)
T 1got_B          155 NQIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAI  232 (340)
T ss_dssp             TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEE
T ss_pred             CcEEEEECCCcEEEEECCC-CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEE
Confidence            4588899999999999987 5778888999999999999999999999999999999999998876665 5688899999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEeecchhhH
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~~~~~~~  160 (197)
                      +|+|++++|++++.|+.|++||+++++.+..+.....      ...+.+++|+|+|++|+++..+ .+.+|+....+.
T Consensus       233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC------CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc------ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE
Confidence            9999999999999999999999998887765543221      1236899999999999977654 789999865543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=8e-26  Score=170.82  Aligned_cols=144  Identities=13%  Similarity=0.294  Sum_probs=127.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC--------------------CCEEEEEeCCCcEEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT--------------------GREFVAGGYDKSLRLY   61 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~~~~d~~v~i~   61 (197)
                      ++.+|++|+.|+.|++||+.. ......+.+|...|.+++|+|+                    +.+|++|+.|+.|++|
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw  323 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  323 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence            688999999999999999987 5677788899999999999996                    6689999999999999


Q ss_pred             ECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccce
Q psy18074         62 LAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        62 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      |++++.++..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+..        .|.+++|+|++.+
T Consensus       324 d~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~  394 (410)
T 1vyh_C          324 DVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--------FVTSLDFHKTAPY  394 (410)
T ss_dssp             ETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--------CEEEEEECSSSSC
T ss_pred             ECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--------cEEEEEEcCCCCE
Confidence            99999877665 56888999999999999999999999999999999888887766654        3789999999999


Q ss_pred             eeeec-CcceEEeec
Q psy18074        142 IARHR-QVPRHIYNA  155 (197)
Q Consensus       142 l~~~~-~~~~~i~~~  155 (197)
                      |++++ ++.+.+|+.
T Consensus       395 l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          395 VVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEETTSEEEEEC-
T ss_pred             EEEEeCCCcEEEEeC
Confidence            99766 458899985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=2.3e-25  Score=162.28  Aligned_cols=149  Identities=11%  Similarity=0.141  Sum_probs=130.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++|++.. +.....+.+|...|.+++|+|++..|++++.|+.|++||+.++..+..+ .+|...|
T Consensus        33 ~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v  110 (312)
T 4ery_A           33 PNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYV  110 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCE
Confidence            3688999999999999999986 5677788899999999999999999999999999999999998876665 5678899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .+++|+|+++++++++.|+.|++||+.+++.+..+..+..        .+.+++|+|++++++++. ++.+.+|+....+
T Consensus       111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--------CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC--------cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999999999999999999999999999988877766544        378999999999988665 5588999987543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=6.9e-26  Score=168.12  Aligned_cols=151  Identities=16%  Similarity=0.216  Sum_probs=128.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++..|++|+.|+.|++||+.+ +.++..+.+|...|.+++|+|  ++..|++|+.|+.|++||++++.+...+ ..|...
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~-~~h~~~  242 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHESD  242 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSC
T ss_pred             CCCEEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCC
Confidence            567899999999999999987 577888999999999999988  4689999999999999999999877665 568889


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      |.+++|+|++.+|++++.|+.|++||+++++.+..+......      ..+.+++|+|++.+|+++.. ..+.+|+....
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc------cceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            999999999999999999999999999988776655433211      12578999999999997764 58999998665


Q ss_pred             hH
Q psy18074        159 HR  160 (197)
Q Consensus       159 ~~  160 (197)
                      +.
T Consensus       317 ~~  318 (354)
T 2pbi_B          317 SR  318 (354)
T ss_dssp             SE
T ss_pred             ce
Confidence            43

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=5.6e-26  Score=168.01  Aligned_cols=169  Identities=14%  Similarity=0.158  Sum_probs=128.7

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCcee----ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLN----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ..|++|+.||.|++||+.+. +...    .+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++..+..+ .+|...
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~  171 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQ  171 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSC
T ss_pred             CeEEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCc
Confidence            46789999999999999863 3332    34589999999999999999999999999999999999887766 678899


Q ss_pred             eeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc-cceeeeec-CcceEEeecc
Q psy18074         80 VTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ-IRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~~~i~~~~  156 (197)
                      |.+++|+|++. ++++++.|+.|++||+++++....+......      ..+.+++|+|+ +++++++. ++.+.+|++.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG------YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C------CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceee------ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            99999999885 6789999999999999998887766433321      23678999995 56777665 5578999997


Q ss_pred             hhhHHHHhHhHhhhhhhhcCCCCC
Q psy18074        157 AEHRAIRSKQKRKESNKRTHSAPG  180 (197)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~  180 (197)
                      ..+.......+........+++.+
T Consensus       246 ~~~~~~~~~~h~~~v~~v~fsp~g  269 (344)
T 4gqb_B          246 STSCVLSSAVHSQCVTGLVFSPHS  269 (344)
T ss_dssp             C--CCEEEECCSSCEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCCEEEEEEccCC
Confidence            665443333334444455555443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=4.7e-25  Score=174.28  Aligned_cols=154  Identities=16%  Similarity=0.215  Sum_probs=129.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec------ccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT------KRM   77 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~   77 (197)
                      ..|++|+.|+.|++||... .+....+.+|...|.+++|+|++.+|++++.|+.|++||+.++.....+..      +|.
T Consensus       161 ~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~  239 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  239 (611)
T ss_dssp             CEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             eEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence            3699999999999999876 566788899999999999999999999999999999999998887665522      688


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc-----------------------------------ccc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ-----------------------------------RQA  122 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------------------~~~  122 (197)
                      ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.                                   ...
T Consensus       240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~  319 (611)
T 1nr0_A          240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV  319 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence            999999999999999999999999999999888766553211                                   012


Q ss_pred             cccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074        123 LDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       123 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      +..|...|.+++|+|+|++|++++ +..+.+|++...
T Consensus       320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            335667799999999999999766 558999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=1.2e-24  Score=158.49  Aligned_cols=150  Identities=15%  Similarity=0.277  Sum_probs=129.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++++|++|+.|+.|++||+.+ +..+..+.+|...|.++.|+|++..|++++.|+.|++||++++.....+ ..|...|
T Consensus        75 ~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v  152 (312)
T 4ery_A           75 SDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPV  152 (312)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCE
T ss_pred             CCCCEEEEECCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcE
Confidence            3688999999999999999987 5778888999999999999999999999999999999999998876665 5577899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .+++|+|+++++++++.|+.|++||+.+++.+..+.....       ..+..++|+|++++|+++. ++.+.+|+....+
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  225 (312)
T 4ery_A          153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK  225 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-------CCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-------CceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999999999999999999999999999887766543332       2367899999999988665 5588999987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=7e-25  Score=162.12  Aligned_cols=148  Identities=17%  Similarity=0.242  Sum_probs=122.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc--eeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD--IYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~   77 (197)
                      .++.+|++|+.|+.|++||+.... .....+.+|...|.+++|+|++.+|++++.|+.|++||+..+....  .....|.
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~  150 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT  150 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence            378999999999999999987532 3567788999999999999999999999999999999998764322  2235688


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      ..|.+++|+|++++|++++.|+.|++||..+++..  ..+.++.        ..|.+++|+|++++|++++. ..+.||+
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~--------~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE--------STVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS--------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC--------CceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            89999999999999999999999999999876533  3444444        34789999999999997664 5889998


Q ss_pred             cc
Q psy18074        155 AQ  156 (197)
Q Consensus       155 ~~  156 (197)
                      ..
T Consensus       223 ~~  224 (345)
T 3fm0_A          223 QY  224 (345)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=1.1e-24  Score=159.43  Aligned_cols=148  Identities=15%  Similarity=0.163  Sum_probs=126.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++||+.+ ++....+.+|...|.+++|+|++..|++++.|+.|++||++.. .+..+ .+|...|
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v  151 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWV  151 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcE
Confidence            3788999999999999999987 5778889999999999999999999999999999999999754 33333 5688899


Q ss_pred             eEEEEccC------CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEe
Q psy18074         81 THTVWSLD------NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIY  153 (197)
Q Consensus        81 ~~v~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~  153 (197)
                      .+++|+|.      +..+++++.|+.|++||+.+++....+.++...        |.+++|+|++++|++++ ++.+.+|
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~--------v~~~~~sp~g~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLW  223 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC--------EEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc--------EEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99999985      448999999999999999988877777665543        78999999999999766 4588999


Q ss_pred             ecchhh
Q psy18074        154 NAQAEH  159 (197)
Q Consensus       154 ~~~~~~  159 (197)
                      ++...+
T Consensus       224 d~~~~~  229 (319)
T 3frx_A          224 NLAAKK  229 (319)
T ss_dssp             ETTTTE
T ss_pred             ECCCCc
Confidence            987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=8.7e-25  Score=161.61  Aligned_cols=150  Identities=12%  Similarity=0.244  Sum_probs=120.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc-eeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD-IYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~   77 (197)
                      .+|.+|++|+.|+.|++||+.....  ......+|...|.+++|+|++.+|++++.|+.+++|++..+.... ....+|.
T Consensus        26 p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~  105 (345)
T 3fm0_A           26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE  105 (345)
T ss_dssp             TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence            3788999999999999999975321  112236899999999999999999999999999999998765321 2236788


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeccccccccccccccceecccCcccceeeeec-CcceEEe
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIY  153 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~  153 (197)
                      ..|.+++|+|++++|++++.|+.|++||+.++..   +..+..+.        ..|.+++|+|++.+|++++ +..+.+|
T Consensus       106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~--------~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A          106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT--------QDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC--------SCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC--------CCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence            9999999999999999999999999999987643   33333333        3478999999999999766 4588999


Q ss_pred             ecchh
Q psy18074        154 NAQAE  158 (197)
Q Consensus       154 ~~~~~  158 (197)
                      +....
T Consensus       178 ~~~~~  182 (345)
T 3fm0_A          178 REEED  182 (345)
T ss_dssp             EEETT
T ss_pred             EecCC
Confidence            87654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=1.6e-24  Score=162.86  Aligned_cols=154  Identities=16%  Similarity=0.259  Sum_probs=126.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ||.+|++|+.|+.|++||+.+ ......+.+|...|.+++|+|++..|++++.|+.|++||++++.....+  .+...+.
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~  210 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVT  210 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--EcCCCcE
Confidence            788999999999999999987 5777888999999999999999999999999999999999998876554  3447899


Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +++|+| +++++++++.|+.|++||+.++..+..+.... .....+...|.+++|+|++++|++++ +..+.+|++....
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            999999 89999999999999999999988776653221 11223445689999999999999776 4588999987543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=1.9e-24  Score=163.02  Aligned_cols=156  Identities=15%  Similarity=0.203  Sum_probs=132.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+|++|+.|+.|++||+.. +.....+.+|.+.|.+++|+|++..|++++.|+.|++||+.++.....+ .+|...|.
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~  185 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVT  185 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEE
T ss_pred             CCCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEE
Confidence            688999999999999999986 5667777899999999999999999999999999999999998877666 56889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc----------------ccccccccceecccCcccceeeee
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ----------------ALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +++|+|++++|++++.|+.|++||+.+++.+..+..+...                ....+...+.+++|+|++++|+++
T Consensus       186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (420)
T 3vl1_A          186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG  265 (420)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence            9999999999999999999999999999888877643210                111123567889999999999976


Q ss_pred             cC-cceEEeecchhh
Q psy18074        146 RQ-VPRHIYNAQAEH  159 (197)
Q Consensus       146 ~~-~~~~i~~~~~~~  159 (197)
                      .. +.+.+|++...+
T Consensus       266 ~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          266 HVSGVITVHNVFSKE  280 (420)
T ss_dssp             ETTSCEEEEETTTCC
T ss_pred             cCCCeEEEEECCCCc
Confidence            64 578999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-24  Score=158.77  Aligned_cols=149  Identities=15%  Similarity=0.244  Sum_probs=116.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-c---ccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-H---SRD   70 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-~---~~~   70 (197)
                      .++.+|++|+.|+.|++||+...      ..+...+.+|...|.+++|+|++.+|++++.|+.|++||+... .   ++.
T Consensus        68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            36889999999999999998531      2345667899999999999999999999999999999999533 2   222


Q ss_pred             eeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccccccccccccccceecccCcc--cceeeeec
Q psy18074         71 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS--EKLGYVNNKQRQALDYSESLKQKYAHHPQ--IRRIARHR  146 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~  146 (197)
                      . ..+|...|.+++|+|++++|++++.|+.|++||..++  +++..+.+|..        .|.+++|+|+  +.+|++++
T Consensus       148 ~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~~l~s~s  218 (330)
T 2hes_X          148 V-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--------TVWSSDFDKTEGVFRLCSGS  218 (330)
T ss_dssp             E-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--------CEEEEEECCSSSSCEEEEEE
T ss_pred             E-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC--------cEEEEEecCCCCeeEEEEEe
Confidence            2 3578889999999999999999999999999998766  45555655544        4789999998  66777655


Q ss_pred             -CcceEEeecchh
Q psy18074        147 -QVPRHIYNAQAE  158 (197)
Q Consensus       147 -~~~~~i~~~~~~  158 (197)
                       +..+.+|+....
T Consensus       219 ~D~~v~iw~~~~~  231 (330)
T 2hes_X          219 DDSTVRVWKYMGD  231 (330)
T ss_dssp             TTSCEEEEEEEEE
T ss_pred             CCCeEEEEEecCC
Confidence             558999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=3.5e-24  Score=156.80  Aligned_cols=145  Identities=14%  Similarity=0.197  Sum_probs=127.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC------CCEEEEEeCCCcEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT------GREFVAGGYDKSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~   75 (197)
                      ++.+|++|+.|+.|++||++  +..+..+.+|...|.++.|+|.      +..+++++.|+.|++||+.++.....+ .+
T Consensus       118 ~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~  194 (319)
T 3frx_A          118 KASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IG  194 (319)
T ss_dssp             TSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CC
T ss_pred             CCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cC
Confidence            67899999999999999997  4667788899999999999995      448999999999999999988765554 57


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      |...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.         .+.+++|+|++.+++++....+.+|+.
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~v~~~~~sp~~~~la~~~~~~i~v~~~  265 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD---------EVFSLAFSPNRYWLAAATATGIKVFSL  265 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---------CEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------cEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence            88999999999999999999999999999999998887776443         268999999999999988888999987


Q ss_pred             chh
Q psy18074        156 QAE  158 (197)
Q Consensus       156 ~~~  158 (197)
                      ...
T Consensus       266 ~~~  268 (319)
T 3frx_A          266 DPQ  268 (319)
T ss_dssp             TTE
T ss_pred             CcC
Confidence            643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=3e-24  Score=161.53  Aligned_cols=151  Identities=12%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC------CceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceee-
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN------SPLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYH-   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~-   73 (197)
                      ++.+|++|+.|+.|++||+....      .+...+.+|...|.+++|+|++ ..|++++.|+.|++||+.++.....+. 
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            68899999999999999998632      5677888999999999999998 699999999999999999988766653 


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccccccccccccccceecccCcccceeeee----cCc
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV-NNKQRQALDYSESLKQKYAHHPQIRRIARH----RQV  148 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~  148 (197)
                      ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..+...       .+..++|+|++++++++    .+.
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-------RPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-------SCCEEEECSTTEEEEEEECTTCCE
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-------cceEEEEcCCCcEEEEeccCCCCc
Confidence            567889999999999999999999999999999999888777 444432       25789999999999987    566


Q ss_pred             ceEEeecchhh
Q psy18074        149 PRHIYNAQAEH  159 (197)
Q Consensus       149 ~~~i~~~~~~~  159 (197)
                      .+.+|+....+
T Consensus       246 ~i~iwd~~~~~  256 (402)
T 2aq5_A          246 QVALWDTKHLE  256 (402)
T ss_dssp             EEEEEETTBCS
T ss_pred             eEEEEcCcccc
Confidence            89999987654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=4e-24  Score=159.99  Aligned_cols=154  Identities=13%  Similarity=0.167  Sum_probs=124.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeec-----ccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCC-cccceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVH-----KDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQG-HSRDIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~   75 (197)
                      +..|++|+.|+.|++||+.+ +..+..+     .+|...|.++.|+| ++..|++|+.|+.|++||++.. .....+ .+
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~  247 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HG  247 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CC
T ss_pred             CCEEEEECCCCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CC
Confidence            45799999999999999987 4555544     57889999999987 7899999999999999999854 444443 67


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYN  154 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~  154 (197)
                      |...|.+++|+|++++|++++.|+.|++||++++..+..+..+... .......+.+++|+|+|++|+++.. +.+.+|+
T Consensus       248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-cccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            8899999999999999999999999999999999888776544321 1111224789999999999997764 5889999


Q ss_pred             cchhh
Q psy18074        155 AQAEH  159 (197)
Q Consensus       155 ~~~~~  159 (197)
                      ....+
T Consensus       327 ~~~~~  331 (380)
T 3iz6_a          327 TLLAE  331 (380)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            76443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=5.3e-24  Score=157.22  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=120.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v   80 (197)
                      ++.++++|+.|+.|++||+++ +.....+.+|...|.+++|+|++..|++++.|+.|++||+......... ...|...|
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            678999999999999999987 5778888999999999999999999999999999999999843322211 23577889


Q ss_pred             eEEEEccCC----------CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cc
Q psy18074         81 THTVWSLDN----------KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VP  149 (197)
Q Consensus        81 ~~v~~~~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  149 (197)
                      .+++|+|++          .++++++.|+.|++||. ..+....+..+..        .|.+++|+|+|++|++++. ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--------~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--------NVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--------CEEEEEECTTSSEEEEEETTCE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--------cceEEEECCCCCEEEEEcCCCe
Confidence            999999987          78999999999999994 4455555554443        4789999999999997764 57


Q ss_pred             eEEeecc
Q psy18074        150 RHIYNAQ  156 (197)
Q Consensus       150 ~~i~~~~  156 (197)
                      +.+|++.
T Consensus       237 v~iwd~~  243 (343)
T 2xzm_R          237 LLIWDIL  243 (343)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            8999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=2.7e-24  Score=168.31  Aligned_cols=141  Identities=20%  Similarity=0.316  Sum_probs=122.2

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .|+.+|++++.|+.|++||..  +..+..+.+|...|.+++|+|++.+|++++.|+.|++||. +++.+..+ .+|...|
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h~~~v  511 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSV  511 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCCCCCE
Confidence            368899999999999999975  5677888899999999999999999999999999999996 46655555 5788999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~  154 (197)
                      ++++|+|++++|++++.|+.|++||. +++.+..+.+|...        |.+++|+|||++|++++ +..+.+|+
T Consensus       512 ~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~--------v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--------VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC--------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC--------EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999996 57777777666543        78999999999999765 45789996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.1e-24  Score=155.83  Aligned_cols=145  Identities=15%  Similarity=0.293  Sum_probs=110.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCC-Cceeec-cc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-------cccceee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLN-SPLNVH-KD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-------HSRDIYH   73 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~-~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~   73 (197)
                      .+|++|+.|+.|++||+.... .....+ .. |...|.+++|+|++.+|++++.|+.|++|++...       ..... .
T Consensus        25 ~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~  103 (330)
T 2hes_X           25 GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-I  103 (330)
T ss_dssp             TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE-E
T ss_pred             CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE-E
Confidence            489999999999999997522 233444 34 8999999999999999999999999999998542       22222 3


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC----ceeeeeccccccccccccccceecccCcccceeeeec-Cc
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS----EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QV  148 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~  148 (197)
                      .+|...|.+++|+|++++|++++.|+.|++||+...    +.+..+..+.        ..|.+++|+|++.+|++++ +.
T Consensus       104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--------~~v~~v~~~p~~~~l~s~s~D~  175 (330)
T 2hes_X          104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--------QDVKHVIWHPSEALLASSSYDD  175 (330)
T ss_dssp             C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--------SCEEEEEECSSSSEEEEEETTS
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--------CceEEEEECCCCCEEEEEcCCC
Confidence            578899999999999999999999999999999532    3344444443        3478999999999999776 45


Q ss_pred             ceEEeecch
Q psy18074        149 PRHIYNAQA  157 (197)
Q Consensus       149 ~~~i~~~~~  157 (197)
                      .+.+|+...
T Consensus       176 ~i~iW~~~~  184 (330)
T 2hes_X          176 TVRIWKDYD  184 (330)
T ss_dssp             CEEEEEEET
T ss_pred             eEEEEECCC
Confidence            889998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=8.7e-24  Score=153.20  Aligned_cols=148  Identities=13%  Similarity=0.225  Sum_probs=119.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCccc-ceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSR-DIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~   77 (197)
                      ++.+|++|+.|++|++||+.... .....+..|...|.+++|+|+  +..|++++.|+.|++||++++... .....+|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            37899999999999999998632 345667789999999999997  889999999999999999876422 23346788


Q ss_pred             cceeEEEEccC-------------CCEEEEEeCCCcEEEEEcCCCc----eeeeeccccccccccccccceecccCccc-
Q psy18074         78 QHVTHTVWSLD-------------NKFVISASDEMNLRVWKAHASE----KLGYVNNKQRQALDYSESLKQKYAHHPQI-  139 (197)
Q Consensus        78 ~~v~~v~~~~~-------------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  139 (197)
                      ..|.+++|+|+             +++|++++.|+.|++||++++.    ....+.+|.        ..|.+++|+|++ 
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~--------~~V~~v~~sp~~~  217 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--------DWVRDVAWSPTVL  217 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--------SCEEEEEECCCCS
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC--------CceEEEEECCCCC
Confidence            89999999997             5799999999999999998765    333444443        458999999984 


Q ss_pred             --ceeeeec-CcceEEeecch
Q psy18074        140 --RRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus       140 --~~l~~~~-~~~~~i~~~~~  157 (197)
                        .+|++++ +..+.||+...
T Consensus       218 ~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESS
T ss_pred             CceEEEEEECCCcEEEEEeCC
Confidence              7888765 55899999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=4.1e-24  Score=158.79  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=126.4

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      .++.+|++|+.|+.|++||+.+ +..+..+.+|...|.+++|+|++. .+++++.|+.|++||++++...... ...+..
T Consensus       149 pdg~~l~sgs~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~  227 (357)
T 4g56_B          149 SDGTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT  227 (357)
T ss_dssp             SSSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred             CCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence            3788999999999999999987 577888999999999999999875 7889999999999999988766554 234557


Q ss_pred             ceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeec-CcceEEeec
Q psy18074         79 HVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QVPRHIYNA  155 (197)
Q Consensus        79 ~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~~~i~~~  155 (197)
                      .+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..+...        |.+++|+|++ ++|++++ +..+.||++
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~--------v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN--------ITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC--------EEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee--------EEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            8999999997 567889999999999999999888777766543        7899999987 5677665 568999998


Q ss_pred             chhh
Q psy18074        156 QAEH  159 (197)
Q Consensus       156 ~~~~  159 (197)
                      ...+
T Consensus       300 ~~~~  303 (357)
T 4g56_B          300 DFSE  303 (357)
T ss_dssp             TSCE
T ss_pred             CCCc
Confidence            6543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=8.7e-24  Score=156.07  Aligned_cols=147  Identities=15%  Similarity=0.209  Sum_probs=119.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCC------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~   75 (197)
                      |+.+|++|+.|+.|++||+...      +.+...+.+|...|.+++|+|++.++++++.|+.|++||++++.....+ .+
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~  116 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VG  116 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-EC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cC
Confidence            7889999999999999998642      2345668899999999999999999999999999999999998876665 56


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc----------ceeeee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI----------RRIARH  145 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~  145 (197)
                      |...|.+++|+|++++|++++.|+.|++||+.... ......     ...+...+.+++|+|++          .+++++
T Consensus       117 h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~  190 (343)
T 2xzm_R          117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAE-----KENHSDWVSCVRYSPIMKSANKVQPFAPYFASV  190 (343)
T ss_dssp             CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCT-----TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeec-----ccCCCceeeeeeeccccccccccCCCCCEEEEE
Confidence            88999999999999999999999999999997432 222211     01223457899999986          567755


Q ss_pred             c-CcceEEeec
Q psy18074        146 R-QVPRHIYNA  155 (197)
Q Consensus       146 ~-~~~~~i~~~  155 (197)
                      . +..+.+|+.
T Consensus       191 ~~d~~i~iwd~  201 (343)
T 2xzm_R          191 GWDGRLKVWNT  201 (343)
T ss_dssp             ETTSEEEEEET
T ss_pred             cCCCEEEEEcC
Confidence            4 568899984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=5.2e-24  Score=158.22  Aligned_cols=147  Identities=19%  Similarity=0.233  Sum_probs=117.3

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceee--cccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNV--HKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++++++.|+.|++||+++ +++...  +..+...+.+++|+|++ ..|++|+.|+.|++||++++.....+ ..|...|
T Consensus       195 ~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v  272 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNI  272 (357)
T ss_dssp             SCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCE
T ss_pred             ceeeeeccCCceEEEECCC-CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeE
Confidence            5789999999999999986 344433  34567789999999975 67889999999999999998877665 5677899


Q ss_pred             eEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc-ccceeeeec-CcceEEeecch
Q psy18074         81 THTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      ++++|+|++ ++|++++.|+.|++||+.+++.+..+ +|.        ..|.+++|+| ++.+|++++ ++.+.+|++..
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~--------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHR--------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCS--------SCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCC--------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999999987 57899999999999999988876544 333        3478999998 788888655 56899999876


Q ss_pred             hhHH
Q psy18074        158 EHRA  161 (197)
Q Consensus       158 ~~~~  161 (197)
                      ..+.
T Consensus       344 ~~~~  347 (357)
T 4g56_B          344 EGRT  347 (357)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            5444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.5e-24  Score=157.08  Aligned_cols=151  Identities=8%  Similarity=0.019  Sum_probs=118.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc-ceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR-DIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~   79 (197)
                      ++.++++|+.|+.|++||++. +....... .+...+.+++|+|++.+|++|+.||.|++||++++... ..+...|...
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK  216 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred             CCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence            678999999999999999986 45554443 44557999999999999999999999999999998876 4443348899


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccc--eecccCcccceeeeec--CcceEEeec
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLK--QKYAHHPQIRRIARHR--QVPRHIYNA  155 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~--~~~~~i~~~  155 (197)
                      |.+++|+|++.+|++++ ++.|++||+++++.+..+........     .+  .+++|+|+|++|+++.  +..+.+|+.
T Consensus       217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF-----KTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC----------CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc-----cccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            99999999999999999 55999999998877655543211111     12  3599999999999744  668899988


Q ss_pred             chhh
Q psy18074        156 QAEH  159 (197)
Q Consensus       156 ~~~~  159 (197)
                      ....
T Consensus       291 ~~~~  294 (343)
T 3lrv_A          291 DKKT  294 (343)
T ss_dssp             CTTT
T ss_pred             cccc
Confidence            5543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.92  E-value=1.8e-23  Score=151.48  Aligned_cols=151  Identities=11%  Similarity=0.180  Sum_probs=120.2

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccc-eeeccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRD-IYHTKR   76 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~   76 (197)
                      .+|.+|++|+.|+.|++||+... ..+...+.+|.++|.+++|+|+  +..|++++.|+.|++||+.++.... .....|
T Consensus        19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h   98 (297)
T 2pm7_B           19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH   98 (297)
T ss_dssp             TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC
Confidence            37899999999999999999742 3567888999999999999874  8999999999999999999875322 223567


Q ss_pred             ccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCce--eeeeccccccccccccccceecccCcc-------------c
Q psy18074         77 MQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEK--LGYVNNKQRQALDYSESLKQKYAHHPQ-------------I  139 (197)
Q Consensus        77 ~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~  139 (197)
                      ...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..+        ...|.+++|+|+             +
T Consensus        99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h--------~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH--------AIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC--------SSCEEEEEECCCC------------C
T ss_pred             CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc--------cCccceEeecCCcccccccCCCCCCc
Confidence            789999999997  89999999999999999986532  2223333        334789999996             4


Q ss_pred             ceeeeec-CcceEEeecchhh
Q psy18074        140 RRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       140 ~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++|++++ +..+.+|+....+
T Consensus       171 ~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          171 RKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             CEEEEEETTSCEEEEEEETTT
T ss_pred             ceEEEEcCCCcEEEEEEcCCC
Confidence            6777655 5589999986543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=155.22  Aligned_cols=147  Identities=7%  Similarity=-0.024  Sum_probs=120.1

Q ss_pred             EEEEcCCCcEEEEEccCC--------CCceeec-ccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          6 FTAANEDFNLYSYDIRQL--------NSPLNVH-KDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~--------~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      +++++.|+.|++|+....        ...+..+ ..|.+.|.+++|+|  ++.++++++.|+.|++||++++........
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            789999999999976521        2223333 35668899999999  999999999999999999999887655544


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-eeecc-ccccccccccccceecccCcccceeeeecCcceEE
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL-GYVNN-KQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHI  152 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i  152 (197)
                      .+...+.+++|+|++.++++|+.||.|++||+++++.+ ..+.. |.        ..|.+++|+|++.+|+++.++.+.+
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~--------~~v~~l~fs~~g~~l~s~~~~~v~i  239 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE--------AKIKEVKFADNGYWMVVECDQTVVC  239 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT--------SCEEEEEECTTSSEEEEEESSBEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC--------CCEEEEEEeCCCCEEEEEeCCeEEE
Confidence            55567999999999999999999999999999998876 55655 33        3479999999999999888889999


Q ss_pred             eecchhhH
Q psy18074        153 YNAQAEHR  160 (197)
Q Consensus       153 ~~~~~~~~  160 (197)
                      |+++..+.
T Consensus       240 wd~~~~~~  247 (343)
T 3lrv_A          240 FDLRKDVG  247 (343)
T ss_dssp             EETTSSTT
T ss_pred             EEcCCCCc
Confidence            99977644

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-24  Score=167.30  Aligned_cols=146  Identities=12%  Similarity=0.036  Sum_probs=121.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEE--EECCCC-CEEEEEeCCCcEEEEECCCCcccceeecccc--
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSV--DYSPTG-REFVAGGYDKSLRLYLAHQGHSRDIYHTKRM--   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~--   77 (197)
                      +..|++|+.||+|++||+++...+...+.+|...|.++  .|+|++ ..|++++.|++|++||++++.+...+ .+|.  
T Consensus       277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-~~~~~~  355 (524)
T 2j04_B          277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-VSRFRG  355 (524)
T ss_dssp             SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-EEECSC
T ss_pred             CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-cccccc
Confidence            35799999999999999986445566788999999999  578888 89999999999999999988776554 2333  


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~  156 (197)
                      ..|.+++|+|+++.+++++.|+.|++||++++..+..+.+|..        .|.+++|+|+|.+|++++. +.+.+|+..
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~--------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET--------TITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS--------CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC--------ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            2478999999999999999999999999999887766665554        4789999999999997764 488999975


Q ss_pred             h
Q psy18074        157 A  157 (197)
Q Consensus       157 ~  157 (197)
                      .
T Consensus       428 ~  428 (524)
T 2j04_B          428 R  428 (524)
T ss_dssp             S
T ss_pred             H
Confidence            4

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.92  E-value=6.3e-24  Score=167.85  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=117.2

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-Ccccce-eecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-GHSRDI-YHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-~~~~~~-~~~~~~   77 (197)
                      .||.+|++|+.|+.|++||+.... ..... .+|...|.+++|+|+|.+|++++.|+.|++|++.+ ++.... ....|.
T Consensus       458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~  536 (611)
T 1nr0_A          458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT  536 (611)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred             CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc
Confidence            378999999999999999997521 11233 67899999999999999999999999999999987 554443 223488


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce-e-eeeccccccccccccccceecccCcccceee-eecCcceEEee
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK-L-GYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYN  154 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~  154 (197)
                      ..|.+++|+|+|++|++++.|+.|++||+.++.. . ..+.+|.       ...|.+++|+|+++ |+ ++.+..+.+|+
T Consensus       537 ~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~-------~~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          537 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA-------MSSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST-------TSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc-------ccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence            9999999999999999999999999999987653 2 3333331       23478999999999 55 45566899998


Q ss_pred             c
Q psy18074        155 A  155 (197)
Q Consensus       155 ~  155 (197)
                      +
T Consensus       609 ~  609 (611)
T 1nr0_A          609 V  609 (611)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=1.7e-23  Score=157.23  Aligned_cols=147  Identities=14%  Similarity=0.259  Sum_probs=118.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec-------ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc-----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH-------KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR-----   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~-----   69 (197)
                      ++.+|++|+.|+.|++||+++ +..+..+       .+|...|.+++|+|++..|++++.|+.|++||+.+....     
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~  296 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  296 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence            688999999999999999986 4444444       578899999999999999999999999999999764321     


Q ss_pred             ------ceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccC------c
Q psy18074         70 ------DIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH------P  137 (197)
Q Consensus        70 ------~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~  137 (197)
                            .....+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...        |.+++|+      |
T Consensus       297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~--------v~~v~~~~~~~~~p  368 (393)
T 1erj_A          297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--------VISVAVANGSSLGP  368 (393)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC--------EEEEEECSSCTTCT
T ss_pred             CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC--------EEEEEecCCcCcCC
Confidence                  1123568889999999999999999999999999999999988888776654        5667665      4


Q ss_pred             ccceeeeec-CcceEEeecch
Q psy18074        138 QIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus       138 ~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      ++.+|++++ ++.+.||+...
T Consensus       369 ~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          369 EYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEECcccc
Confidence            788888766 45889999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=7.5e-24  Score=161.08  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=121.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee--eccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~   78 (197)
                      ++.+|++|+.||.|++||++  +..+..+.+|...|.+++|+|++. .+++++.|+.|++||++++.....+  ..+|..
T Consensus       220 ~~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  297 (435)
T 4e54_B          220 SSRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH  297 (435)
T ss_dssp             TTTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred             CCCEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence            68899999999999999997  456778889999999999999876 6778999999999999887654333  356888


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc---------------------------------------
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ---------------------------------------  119 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------------------  119 (197)
                      .|++++|+|+|++|++++.||.|++||+.++.....+..+.                                       
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  377 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL  377 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence            99999999999999999999999999998765433221110                                       


Q ss_pred             ----------ccc----cccccccceec-ccCcccceeeeecCcceEEeecchhh
Q psy18074        120 ----------RQA----LDYSESLKQKY-AHHPQIRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       120 ----------~~~----~~~~~~~v~~~-~~s~~~~~l~~~~~~~~~i~~~~~~~  159 (197)
                                ...    ...+...|.++ +|+|+|++|+++.++.+.||++...+
T Consensus       378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk  432 (435)
T 4e54_B          378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEAR  432 (435)
T ss_dssp             CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC---
T ss_pred             CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCe
Confidence                      000    11223345565 69999999999998899999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=1.2e-23  Score=168.42  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=128.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee--eccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~   78 (197)
                      .++.+|++|+.|+.|++||+.+ +.....+.+|...|.+++|+|++..|++++.|+.|++||+.........  ..+|..
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD  518 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence            3788999999999999999987 5777888999999999999999999999999999999998754332222  246778


Q ss_pred             ceeEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeec
Q psy18074         79 HVTHTVWSLDN--KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNA  155 (197)
Q Consensus        79 ~v~~v~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~  155 (197)
                      .|.+++|+|++  ..+++++.|+.|++||+.+++....+.+|...        |.+++|+|++++|++++ ++.+.+|++
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~--------v~~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY--------VSTVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC--------EEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC--------EEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            89999999986  57999999999999999998887777666543        78999999999999766 458999998


Q ss_pred             chhhH
Q psy18074        156 QAEHR  160 (197)
Q Consensus       156 ~~~~~  160 (197)
                      ...+.
T Consensus       591 ~~~~~  595 (694)
T 3dm0_A          591 AEGKK  595 (694)
T ss_dssp             TTTEE
T ss_pred             CCCce
Confidence            76543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1e-23  Score=153.33  Aligned_cols=144  Identities=8%  Similarity=0.004  Sum_probs=111.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC---CCeEEEEECCCCCEE------------EEEeCCCcEEEEECCCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT---SAVTSVDYSPTGREF------------VAGGYDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l------------~~~~~d~~v~i~d~~~~   66 (197)
                      ++.+|++|+.|++|++||+.+ ++.+..+.+|.   ..+.+++|+|+|..+            ++|+.|+++++||..++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKT-GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTT-CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCceEEEecCCCcEEEEECCC-CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            468899999999999999998 67788887654   357778999999876            56788999999999999


Q ss_pred             ccccee----ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         67 HSRDIY----HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        67 ~~~~~~----~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ..+..+    ..+|...+.+.++  ++.++++++.|++|+|||+.+++.+.++.++....       +..++|||||++|
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v-------vs~vafSPDG~~L  341 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH-------WSFVKWSGTDSHL  341 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CC-------CCEEEECSSSSEE
T ss_pred             EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe-------EEEEEECCCCCEE
Confidence            876543    2355544444444  48899999999999999999999999988776532       2468999999999


Q ss_pred             eeecCc-ceEEeec
Q psy18074        143 ARHRQV-PRHIYNA  155 (197)
Q Consensus       143 ~~~~~~-~~~i~~~  155 (197)
                      ++++.+ .+.||+.
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            987755 8999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=6.9e-23  Score=150.25  Aligned_cols=153  Identities=10%  Similarity=0.119  Sum_probs=122.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..++++++.|+.|++||++. ......+.+|.+.|.+++|+|++.+|++++.|+.|++||+.+...+..+.  +...+.+
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~  261 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINA  261 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred             CcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEe
Confidence            45788999999999999987 57788888999999999999999999999999999999999988776653  3478999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++|+|++.++ +++.|+.|++||+.++..+..+..... .....+...|.+++|+|+|++|++++ ++.+.||++....
T Consensus       262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9999987655 556699999999998887766654322 12234456689999999999999766 4589999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.1e-24  Score=159.88  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=115.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc---ccceeeccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH---SRDIYHTKR   76 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~   76 (197)
                      .++.+|++|+.|+.|++||+.... .....+.+|...|.+++|+|++.+|++++.|+.|++||+.++.   .... ...|
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-~~~~   99 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV-LLRL   99 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE-CCCC
T ss_pred             CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE-eccc
Confidence            378899999999999999998632 5677888999999999999999999999999999999999876   2222 3567


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce---eeeeccccccccccccccceecccCcccceeeeecC-cceEE
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHI  152 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i  152 (197)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.   ...+...       +...|.+++|+|++++|+++.. ..+.+
T Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C          100 NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP-------LRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS-------CCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc-------cCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            88999999999999999999999999999998763   4444441       2234789999999999997664 57899


Q ss_pred             eecc
Q psy18074        153 YNAQ  156 (197)
Q Consensus       153 ~~~~  156 (197)
                      |++.
T Consensus       173 wd~~  176 (377)
T 3dwl_C          173 LSAY  176 (377)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.8e-24  Score=159.40  Aligned_cols=146  Identities=15%  Similarity=0.073  Sum_probs=118.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC--ceeeccc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-------------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS--PLNVHKD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-------------   65 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-------------   65 (197)
                      ++.+|++|+.|+.|++||++....  ....+.. |...|.+++|+|++.+|++++.|+.|++||+..             
T Consensus       111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  190 (377)
T 3dwl_C          111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG  190 (377)
T ss_dssp             TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred             CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence            678999999999999999986321  4566766 999999999999999999999999999999863             


Q ss_pred             -----CcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce----eeeeccccccccccccccceecccC
Q psy18074         66 -----GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK----LGYVNNKQRQALDYSESLKQKYAHH  136 (197)
Q Consensus        66 -----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s  136 (197)
                           +.+...+  .|...|.+++|+|++++|++++.|+.|++||+.+++.    +..+..+.        ..+.+++|+
T Consensus       191 ~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------~~v~~~~~s  260 (377)
T 3dwl_C          191 SRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--------LPLRSLLWA  260 (377)
T ss_dssp             SCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--------SCEEEEEEE
T ss_pred             cccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--------CceEEEEEc
Confidence                 2232333  7788999999999999999999999999999998876    44554443        347899999


Q ss_pred             cccceeeeecCcceEEeecch
Q psy18074        137 PQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus       137 ~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      |++++|+++.++...+|+...
T Consensus       261 ~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          261 NESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             ETTEEEEEESSSSEEEECCCC
T ss_pred             CCCCEEEEEcCCcEEEEEeCC
Confidence            999999999988888888764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-24  Score=165.88  Aligned_cols=171  Identities=10%  Similarity=0.002  Sum_probs=127.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC----------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN----------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      +.+||+|+.|++|++||+....          .+...+.+|...|++++|+|+ ..|++|+.||.|++||++++......
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~  303 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY  303 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence            5799999999999999997532          123467789999999999985 48999999999999999987544333


Q ss_pred             ecccccceeEE--EEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-c
Q psy18074         73 HTKRMQHVTHT--VWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-V  148 (197)
Q Consensus        73 ~~~~~~~v~~v--~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  148 (197)
                      ...|...|.++  +|+|++ ++|++++.|++|++||+++++....+.++...      ..+.+++|+|+++.++++.. .
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~------~~v~~v~fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG------SNLVPVVYCPQIYSYIYSDGAS  377 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC------CSCCCEEEETTTTEEEEECSSS
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc------CcccceEeCCCcCeEEEeCCCC
Confidence            46788999999  578888 89999999999999999988776665544321      12578999999988886654 4


Q ss_pred             ceEEeecchhhHHHHhHhHhhhhhhhcCCCCC
Q psy18074        149 PRHIYNAQAEHRAIRSKQKRKESNKRTHSAPG  180 (197)
Q Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (197)
                      .+.+|+.+..........+........+++.+
T Consensus       378 tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          378 SLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             EEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             cEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence            79999987654322222233334444555444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.91  E-value=1.4e-23  Score=156.42  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=117.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCce-eecccCCCCeEEEEECCCCCEEEEEeCCC----cEEEEECCCCcccce---e
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPL-NVHKDMTSAVTSVDYSPTGREFVAGGYDK----SLRLYLAHQGHSRDI---Y   72 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~i~d~~~~~~~~~---~   72 (197)
                      .||.++++++.+ .+.+|+..+..... .....|...|.+++|+|++..+++++.++    .+++|++........   .
T Consensus       186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~  264 (365)
T 4h5i_A          186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ  264 (365)
T ss_dssp             TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence            478999999855 56677766533222 33456788899999999999999998777    688898876643221   1


Q ss_pred             ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-ccccccccccccccceecccCcccceeeeecC-cce
Q psy18074         73 HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV-NNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPR  150 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~  150 (197)
                      ..+|...|++++|+|+|++||+|+.|+.|+|||+.+++.+..+ .+|..        .|++++|+|||++||+++. ..+
T Consensus       265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~--------~V~~v~fSpdg~~laS~S~D~tv  336 (365)
T 4h5i_A          265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF--------AITEVTISPDSTYVASVSAANTI  336 (365)
T ss_dssp             EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS--------CEEEEEECTTSCEEEEEETTSEE
T ss_pred             ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC--------CEEEEEECCCCCEEEEEeCCCeE
Confidence            3567789999999999999999999999999999999988765 34443        4799999999999998765 589


Q ss_pred             EEeecchh
Q psy18074        151 HIYNAQAE  158 (197)
Q Consensus       151 ~i~~~~~~  158 (197)
                      .||++...
T Consensus       337 rvw~ip~~  344 (365)
T 4h5i_A          337 HIIKLPLN  344 (365)
T ss_dssp             EEEECCTT
T ss_pred             EEEEcCCC
Confidence            99998543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=4.9e-23  Score=150.82  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=120.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--------CceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--------SPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      |+.+|++|+.|+.|++||+....        .+...+..|...|.+++|+|+  +..|++++.|+.|++||++++.....
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            58899999999999999998632        346677889999999999999  99999999999999999876542211


Q ss_pred             -----------------------------------------------------------eecccccceeEEEEccCC---
Q psy18074         72 -----------------------------------------------------------YHTKRMQHVTHTVWSLDN---   89 (197)
Q Consensus        72 -----------------------------------------------------------~~~~~~~~v~~v~~~~~~---   89 (197)
                                                                                 ...+|...|.+++|+|++   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence                                                                       123477889999999998   


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCceeeeec--------------------------------------cccccccccccccc
Q psy18074         90 -KFVISASDEMNLRVWKAHASEKLGYVN--------------------------------------NKQRQALDYSESLK  130 (197)
Q Consensus        90 -~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~v  130 (197)
                       ++|++++.||.|++||+.++.......                                      ......+..+...|
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence             899999999999999998642111000                                      00011122344568


Q ss_pred             eecccCcccceeeeec-CcceEEeecchhh
Q psy18074        131 QKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       131 ~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .+++|+|++++|++++ ++.+.+|+....+
T Consensus       310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          310 WSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            9999999999999766 5589999987543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=4.3e-23  Score=154.53  Aligned_cols=154  Identities=13%  Similarity=0.168  Sum_probs=127.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc---C---CCCeEEEEECCCCCEEEEEeCC---CcEEEEECCCCccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD---M---TSAVTSVDYSPTGREFVAGGYD---KSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~~v~~~~~sp~~~~l~~~~~d---~~v~i~d~~~~~~~~~~   72 (197)
                      ++ ++++++.|+.|++||++. ..++..+..   |   ...+.+++|+|++..|++++.|   +.|++||+.++..+..+
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             Cc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence            56 899999999999999987 577778887   8   9999999999999999999999   99999999998876665


Q ss_pred             ecc-------------cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec------ccc-------ccccccc
Q psy18074         73 HTK-------------RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN------NKQ-------RQALDYS  126 (197)
Q Consensus        73 ~~~-------------~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~-------~~~~~~~  126 (197)
                       ..             |...|.+++|+|++++|++++.||.|++||+.+++.+..+.      .+.       ......+
T Consensus       275 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          275 -SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             -CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             -ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence             33             77899999999999999999999999999999999888877      330       0001112


Q ss_pred             cccceecccCccc----------ceeeeec-CcceEEeecchh
Q psy18074        127 ESLKQKYAHHPQI----------RRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       127 ~~~v~~~~~s~~~----------~~l~~~~-~~~~~i~~~~~~  158 (197)
                      ...|.+++|+|++          ++|+++. ++.+.+|++...
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            4568999999998          6777655 568899998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2e-23  Score=158.51  Aligned_cols=158  Identities=12%  Similarity=0.077  Sum_probs=129.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc--CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD--MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++.+|++|+.|+.|++||++. ..++..+..  |.+.|.+++|+|++..|++++.||.|++||++++..+..+...|...
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP  259 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence            588999999999999999987 577777877  78999999999999999999999999999999988877664466678


Q ss_pred             eeEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceeeeecccccccc----------------cc--ccccceecccCc
Q psy18074         80 VTHTVWS----LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQAL----------------DY--SESLKQKYAHHP  137 (197)
Q Consensus        80 v~~v~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------~~--~~~~v~~~~~s~  137 (197)
                      |.+++|+    |++.+|++++.||.|++||+.+++.+..+..+.....                ..  +...|.+++|+ 
T Consensus       260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-  338 (437)
T 3gre_A          260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-  338 (437)
T ss_dssp             EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred             eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence            9999665    4678999999999999999999998887775542211                11  45568899999 


Q ss_pred             ccceeeeec-CcceEEeecchhhHH
Q psy18074        138 QIRRIARHR-QVPRHIYNAQAEHRA  161 (197)
Q Consensus       138 ~~~~l~~~~-~~~~~i~~~~~~~~~  161 (197)
                      ++.+|++++ ++.+.+|++...+..
T Consensus       339 ~~~~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          339 NDKILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred             CceEEEecCCCCeEEEEECCCcccc
Confidence            667777665 668999998766543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=4.9e-23  Score=154.95  Aligned_cols=146  Identities=10%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             EEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCc-------ccceee
Q psy18074          5 VFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGH-------SRDIYH   73 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~-------~~~~~~   73 (197)
                      ++++++.||.|++|++...+   .....+.+|.+.|.+++|+| ++..|++++.||.|++||+.++.       ....+ 
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-  127 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-  127 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-
Confidence            34457889999999996532   34556788999999999999 89999999999999999999873       33333 


Q ss_pred             cccccceeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee--ccccccccccccccceecccCcccceeeeec-Ccc
Q psy18074         74 TKRMQHVTHTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYV--NNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVP  149 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~  149 (197)
                      .+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..+  ..+..        .+.+++|+|++.+|+++. ++.
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD--------TIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS--------CEEEEEECTTSSCEEEEETTSE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC--------ceEEEEECCCCCEEEEEecCCc
Confidence            5688999999999998 69999999999999999999888777  44443        378999999999998765 558


Q ss_pred             eEEeecchhh
Q psy18074        150 RHIYNAQAEH  159 (197)
Q Consensus       150 ~~i~~~~~~~  159 (197)
                      +.+|+....+
T Consensus       200 i~iwd~~~~~  209 (402)
T 2aq5_A          200 VRVIEPRKGT  209 (402)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEeCCCCc
Confidence            8999987644

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-22  Score=149.78  Aligned_cols=151  Identities=14%  Similarity=0.114  Sum_probs=131.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.|+.|++||++........+..|...|.+++|+|++..|++++.|+.|++||+.++.....+.  +...+.
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~  263 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLN  263 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCce
Confidence            578999999999999999986456778888899999999999999999999999999999999988777763  557899


Q ss_pred             EEEEccCCCEEEEEeCCC--------------cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-
Q psy18074         82 HTVWSLDNKFVISASDEM--------------NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-  146 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  146 (197)
                      +++|+|+++++++++.++              .+++||+.+++.+..+..+...        |.+++|+|++++|+++. 
T Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP--------LNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC--------EEEEEECTTSSEEEEEET
T ss_pred             eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc--------EEEEEECCCCCEEEEEcC
Confidence            999999999999998888              8999999999888877766543        78999999999999766 


Q ss_pred             CcceEEeecchhhHHH
Q psy18074        147 QVPRHIYNAQAEHRAI  162 (197)
Q Consensus       147 ~~~~~i~~~~~~~~~~  162 (197)
                      ++.+.+|++.......
T Consensus       336 dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          336 DGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             TSEEEEEEECHHHHTC
T ss_pred             CCeEEEEECccccchh
Confidence            5588999998765433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=154.86  Aligned_cols=112  Identities=14%  Similarity=0.279  Sum_probs=97.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCce-eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPL-NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.+|++|+.|+.|++||+...+... ..+.+|...|.+++|+|++.+|++++.|+.|++||+.++.....  ..|...|
T Consensus        53 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v  130 (368)
T 3mmy_A           53 PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPV  130 (368)
T ss_dssp             SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCE
T ss_pred             CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee--ccccCce
Confidence            37999999999999999998633333 67888999999999999999999999999999999999886654  4677899


Q ss_pred             eEEEE--ccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         81 THTVW--SLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        81 ~~v~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .+++|  +|+++++++++.|+.|++||+.+++.+..+
T Consensus       131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  167 (368)
T 3mmy_A          131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL  167 (368)
T ss_dssp             EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred             EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence            99999  899999999999999999999877654433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=2.7e-23  Score=158.01  Aligned_cols=149  Identities=10%  Similarity=0.101  Sum_probs=116.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      ++++||+|+.||.|++||+.... .....+.+|.+.|++++|+| ++.+|++++.|+.|++||++++...... ...+..
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  210 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI  210 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence            56799999999999999997533 23445678999999999998 6889999999999999999876543332 122335


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc-eeeeec-CcceEEeecc
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~~~i~~~~  156 (197)
                      .+.+++|+|++++|++|+.||.|++||+.. +.+..+..+.        ..|.+++|+|++. ++++++ +..+.||++.
T Consensus       211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~--------~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          211 WFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK--------KKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             CCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS--------SCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc--------ceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            678999999999999999999999999864 4444454443        3478999999876 565554 5689999987


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ..+
T Consensus       282 ~~~  284 (435)
T 4e54_B          282 QVR  284 (435)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=3e-23  Score=151.63  Aligned_cols=148  Identities=12%  Similarity=0.175  Sum_probs=117.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccce-eecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDI-YHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~   77 (197)
                      +|.+|++|+.|+.|++||+.... ..+..+.+|.+.|.+++|+|  ++..|++++.|+.|++||+.++..... ...+|.
T Consensus        24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~  103 (316)
T 3bg1_A           24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD  103 (316)
T ss_dssp             GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence            68999999999999999998632 24567889999999999986  489999999999999999998753222 235688


Q ss_pred             cceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCcee---eeeccccccccccccccceecccCcc--------------
Q psy18074         78 QHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKL---GYVNNKQRQALDYSESLKQKYAHHPQ--------------  138 (197)
Q Consensus        78 ~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~--------------  138 (197)
                      ..|.+++|+|+  +.+|++++.|+.|++||+..+...   ..+..        +...+.+++|+|+              
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA--------HTIGCNAVSWAPAVVPGSLIDHPSGQK  175 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS--------SSSCBCCCEECCCCCC------CCSCC
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc--------ccCCcceEEEccccCCccccccccccC
Confidence            89999999998  789999999999999999865321   22222        2334678899987              


Q ss_pred             ---cceeeeec-CcceEEeecch
Q psy18074        139 ---IRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus       139 ---~~~l~~~~-~~~~~i~~~~~  157 (197)
                         +++|++++ +..+.+|+...
T Consensus       176 ~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          176 PNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CCCCCBEECCBTTSBCCEEEECT
T ss_pred             ccccceEEEecCCCeEEEEEeCC
Confidence               46777665 55889999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=1.6e-22  Score=150.01  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=124.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC---ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC--------------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS---PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------------   64 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~--------------   64 (197)
                      ++.+|++++.|+.|++||+.....   .......|...|.+++|+|++..|++++.|+.|++||+.              
T Consensus       107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  186 (372)
T 1k8k_C          107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  186 (372)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence            688999999999999999986321   223336788999999999999999999999999999964              


Q ss_pred             ----CCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         65 ----QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        65 ----~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                          .+.....+ ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+..        .+.+++|+|++.
T Consensus       187 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~v~~~~~~~~~~  257 (372)
T 1k8k_C          187 SKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--------PLLAVTFITESS  257 (372)
T ss_dssp             SCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--------CEEEEEEEETTE
T ss_pred             cccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--------CeEEEEEecCCC
Confidence                34444443 46778999999999999999999999999999999988887766543        378999999999


Q ss_pred             eeeeecCcceEEeecch
Q psy18074        141 RIARHRQVPRHIYNAQA  157 (197)
Q Consensus       141 ~l~~~~~~~~~i~~~~~  157 (197)
                      +++++.++.+.+|+...
T Consensus       258 ~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          258 LVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEETTSSCEEEEEET
T ss_pred             EEEEEeCCeEEEEEccC
Confidence            99999888999999977

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=2.2e-22  Score=151.80  Aligned_cols=150  Identities=12%  Similarity=0.145  Sum_probs=123.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--ccc--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--KRM--   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~--   77 (197)
                      ++.+|++|+.|+.|++||+.. +..+..+.+|...|.+++|+|++..|++++.|+.|++||++++.....+..  .+.  
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  228 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG  228 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTT-CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred             CCCEEEEEeCCCeEEEEeCCC-CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence            678999999999999999987 567788889999999999999999999999999999999999887666522  232  


Q ss_pred             -------------------cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc
Q psy18074         78 -------------------QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ  138 (197)
Q Consensus        78 -------------------~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  138 (197)
                                         ..+.+++|+|+++++++++.||.|++||+++++.+..+.....       ..+.+++|+|+
T Consensus       229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~  301 (420)
T 3vl1_A          229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT-------CSCNSLTVDGN  301 (420)
T ss_dssp             EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS-------SCEEEEEECSS
T ss_pred             ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC-------CCceeEEEeCC
Confidence                               3444555688999999999999999999999887766644322       34789999999


Q ss_pred             cc-eeeeec-CcceEEeecchhh
Q psy18074        139 IR-RIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       139 ~~-~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +. +|+++. ++.+.+|++...+
T Consensus       302 ~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          302 NANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CTTEEEEEETTSEEEEEETTCTT
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCc
Confidence            98 777665 4588999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-22  Score=147.15  Aligned_cols=145  Identities=12%  Similarity=0.137  Sum_probs=125.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++++.|+.|++||..   .....+.. |...+.+++|+|++. +++++.|+.|++||+++++.+..+ ..|...|
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i  228 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-EGHESFV  228 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred             CCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-hcCCceE
Confidence            67899999999999999943   45566665 889999999999988 999999999999999998877666 5677899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      .+++|+|++ .+++++.||.|++||+.+++.+..+..+...        +.+++|+|++++++++.++.+.+|++...+.
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAIS--------IWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSC--------EEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred             EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCce--------EEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence            999999999 5889999999999999999888877665543        7899999999988888888999999876544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=1.5e-22  Score=148.24  Aligned_cols=159  Identities=13%  Similarity=0.171  Sum_probs=124.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcc-------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHS-------   68 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~-------   68 (197)
                      .++.+|++|+.|+.|++||+....   .....+.+|...|.+++|+|  ++..|++++.|+.|++||+.++..       
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  100 (351)
T 3f3f_A           21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW  100 (351)
T ss_dssp             SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred             CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence            368899999999999999998532   34566778999999999999  599999999999999999987642       


Q ss_pred             --cceeecccccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeecc---------------------------
Q psy18074         69 --RDIYHTKRMQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLGYVNN---------------------------  117 (197)
Q Consensus        69 --~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------------  117 (197)
                        ... ...|...|.+++|+|+  ++++++++.||.|++||+.+++.+..+..                           
T Consensus       101 ~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (351)
T 3f3f_A          101 NKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR  179 (351)
T ss_dssp             EEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred             ceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence              222 3567889999999999  99999999999999999987654322110                           


Q ss_pred             ----------------------cc---ccccccccccceecccCccc----ceeeeec-CcceEEeecchhhH
Q psy18074        118 ----------------------KQ---RQALDYSESLKQKYAHHPQI----RRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus       118 ----------------------~~---~~~~~~~~~~v~~~~~s~~~----~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                                            ..   ...+..+...|.+++|+|++    ++|+++. ++.+.+|++.....
T Consensus       180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS  252 (351)
T ss_dssp             SSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred             CCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence                                  00   11223356678999999998    7787665 55899999986533

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=1.4e-22  Score=158.52  Aligned_cols=143  Identities=19%  Similarity=0.296  Sum_probs=122.3

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .|+.+|++++.|+.|++||..  ++.+..+.+|...|.+++|+|++..|++++.|+.|++||.. +..+..+ .+|...|
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~-~~~~~~v  470 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSV  470 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEE-cCCCCCE
Confidence            378899999999999999975  56778888999999999999999999999999999999975 4444444 5688899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~  156 (197)
                      .+++|+|++++|++++.|+.|++||. +++.+..+.++..        .|.+++|+|++++|+++.. ..+.+|+..
T Consensus       471 ~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~--------~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          471 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--------SVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS--------CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC--------CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            99999999999999999999999995 5777777766554        3789999999999997665 578999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=4.1e-22  Score=149.32  Aligned_cols=160  Identities=11%  Similarity=0.128  Sum_probs=124.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY--------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~--------   72 (197)
                      ++.++++|+.|+.|++||++. +.....+..|.+.|.+++|+|++. .+++++.||.|++||++.+......        
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence            456999999999999999987 577788889999999999999998 5889999999999999876521111        


Q ss_pred             -------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc---------------------------
Q psy18074         73 -------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK---------------------------  118 (197)
Q Consensus        73 -------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------  118 (197)
                             ...|...|.+++|+|++++|++++.||.|++||+.+++........                           
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG  313 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence                   1457789999999999999999999999999999876643322110                           


Q ss_pred             ------------cccccccccccceecccCcccceeeeec-CcceEEeecchhhHHH
Q psy18074        119 ------------QRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHRAI  162 (197)
Q Consensus       119 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~~~  162 (197)
                                  ....+..+...|.+++|+|++++|++++ ++.+.+|+....+...
T Consensus       314 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             TEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred             CEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence                        1112234556789999999999999766 5589999998765543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=5e-22  Score=145.27  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=125.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++++.|+.|++||+.... .....+..|...+.+++|+|++..+++++.|+.|++||+.++.....+ ..|...+
T Consensus       108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i  186 (337)
T 1gxr_A          108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGA  186 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-ecccCce
Confidence            67899999999999999998632 145667788999999999999999999999999999999998876665 4577899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .+++|+|+++++++++.|+.|++||+.+++.+..+...         ..+.+++|+|++++++++. ++.+.+|+....+
T Consensus       187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---------SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence            99999999999999999999999999998877665432         2368999999999998766 5588999987653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-22  Score=151.72  Aligned_cols=146  Identities=11%  Similarity=0.045  Sum_probs=124.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+|++++.|+.|++||++. ......+..|...+.+++|+|++ .+++++.|+.|++||+.++..+..+ ..|...+.
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~  334 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVDGVPIF  334 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECTTCCEE
T ss_pred             CCCEEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccCCccEE
Confidence            678999999999999999987 57778888899999999999999 9999999999999999998876665 45678999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCc--------------------eeeeeccccccccccccccceecccCcccce
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASE--------------------KLGYVNNKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      +++|+|++++|++++.||.|++||+.++.                    .+..+..+...      ..|.+++|+|++++
T Consensus       335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN------DYIFDLSWNCAGNK  408 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCC------CCEEEEEECTTSSE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC------CceEEEEccCCCce
Confidence            99999999999999999999999998877                    55555554321      04789999999999


Q ss_pred             eeeec-CcceEEeecc
Q psy18074        142 IARHR-QVPRHIYNAQ  156 (197)
Q Consensus       142 l~~~~-~~~~~i~~~~  156 (197)
                      |+++. ++.+.+|++.
T Consensus       409 l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          409 ISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEESSSCCEEEECC
T ss_pred             EEEEecCceEEEEeec
Confidence            98655 4578999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=2e-22  Score=161.39  Aligned_cols=147  Identities=13%  Similarity=0.202  Sum_probs=124.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee---ecccCCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCcccceeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN---VHKDMTSAVTSVDYSPTG--REFVAGGYDKSLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~   76 (197)
                      ++.+|++|+.|++|++||... .....   ...+|...|.+++|+|++  ..+++++.|+.|++||++++.....+ .+|
T Consensus       483 ~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h  560 (694)
T 3dm0_A          483 DNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGH  560 (694)
T ss_dssp             TSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCC
T ss_pred             CCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-cCC
Confidence            678999999999999999864 22111   124688899999999986  57999999999999999988776655 678


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      ...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.         .+.+++|+|++.+++++.+..+.||++.
T Consensus       561 ~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~---------~v~~~~~sp~~~~l~~~~~~~i~iwd~~  631 (694)
T 3dm0_A          561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS---------VIHALCFSPNRYWLCAATEHGIKIWDLE  631 (694)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS---------CEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC---------cEEEEEEcCCCcEEEEEcCCCEEEEECC
Confidence            8999999999999999999999999999999998876654332         3689999999999999888899999987


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ...
T Consensus       632 ~~~  634 (694)
T 3dm0_A          632 SKS  634 (694)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=3.3e-23  Score=155.70  Aligned_cols=162  Identities=9%  Similarity=-0.045  Sum_probs=114.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC----CceeecccCCCCeEEEEECC--------CCCEEEEEeCCCcEEEEECCCCccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN----SPLNVHKDMTSAVTSVDYSP--------TGREFVAGGYDKSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~sp--------~~~~l~~~~~d~~v~i~d~~~~~~~   69 (197)
                      ++.++++|+.|++|++||.+...    .+...+.+|.+.|.+++|+|        +++.|++++.|++|++||+.++...
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            35689999999999999998632    12345789999999999998        7889999999999999999887665


Q ss_pred             ceeecccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccccc-----------------cccccccccce
Q psy18074         70 DIYHTKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLGYVNNKQR-----------------QALDYSESLKQ  131 (197)
Q Consensus        70 ~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~  131 (197)
                      ... ..|...|.+++|+|++. +|++++.|+.|++||+.+++..........                 .....+...+.
T Consensus       180 ~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          180 LAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            554 45678999999999874 789999999999999998765443321110                 01123344577


Q ss_pred             ecccC-cccceeeeecC-cceEEeecchhhHHHHh
Q psy18074        132 KYAHH-PQIRRIARHRQ-VPRHIYNAQAEHRAIRS  164 (197)
Q Consensus       132 ~~~~s-~~~~~l~~~~~-~~~~i~~~~~~~~~~~~  164 (197)
                      ++.|+ |+++.|+++.. ..+.+|++...+.....
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l  293 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI  293 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence            88876 79999887665 48899998766554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=3.7e-23  Score=151.12  Aligned_cols=148  Identities=15%  Similarity=0.183  Sum_probs=117.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCccc--ceeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSR--DIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~   76 (197)
                      ++.+|++|+.|++|++||+++.. .....+.+|...|.+++|+|+  +..|++++.|+.|++||+..+...  ......|
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            47899999999999999998632 345667789999999999998  789999999999999999876321  2223567


Q ss_pred             ccceeEEEEccC-----------------CCEEEEEeCCCcEEEEEcCCCc---eeeeeccccccccccccccceecccC
Q psy18074         77 MQHVTHTVWSLD-----------------NKFVISASDEMNLRVWKAHASE---KLGYVNNKQRQALDYSESLKQKYAHH  136 (197)
Q Consensus        77 ~~~v~~v~~~~~-----------------~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s  136 (197)
                      ...|.+++|+|+                 +++|++++.|+.|++||+..+.   .+..+.+|        ...|.+++|+
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--------~~~V~~v~~s  221 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--------SDWVRDVAWA  221 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--------SSCEEEEECC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--------CCceEEEEec
Confidence            788999999997                 4789999999999999997542   33344433        3458899999


Q ss_pred             ccc----ceeeeec-CcceEEeecch
Q psy18074        137 PQI----RRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus       137 ~~~----~~l~~~~-~~~~~i~~~~~  157 (197)
                      |++    .+|++++ +..+.||+...
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccC
Confidence            986    7788665 55899998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=3.5e-22  Score=168.48  Aligned_cols=149  Identities=11%  Similarity=0.201  Sum_probs=131.7

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .+|.++++|+.||.|++||+.+ +..+..+.+|.+.|.+++|+|++.++++++.|+.|++||+.++..+..+ .+|...|
T Consensus       625 ~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v  702 (1249)
T 3sfz_A          625 QDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQV  702 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcE
Confidence            3789999999999999999987 5778888999999999999999999999999999999999999887766 5688999


Q ss_pred             eEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecch
Q psy18074         81 THTVWSL--DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~  157 (197)
                      .+++|+|  ++.++++++.|+.|++||+.+++.+..+.++...        |.+++|+|+++++++++. +.+.+|+...
T Consensus       703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~  774 (1249)
T 3sfz_A          703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--------VNHCRFSPDDELLASCSADGTLRLWDVRS  774 (1249)
T ss_dssp             EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC--------EEEEEECSSTTEEEEEESSSEEEEEEGGG
T ss_pred             EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC--------EEEEEEecCCCEEEEEECCCeEEEEeCCC
Confidence            9999999  5568899999999999999999988877766543        789999999999987664 5889999876


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      .+
T Consensus       775 ~~  776 (1249)
T 3sfz_A          775 AN  776 (1249)
T ss_dssp             TE
T ss_pred             Cc
Confidence            53

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=5.4e-22  Score=147.22  Aligned_cols=151  Identities=11%  Similarity=0.044  Sum_probs=114.3

Q ss_pred             EcCCCcEEEEEccCCC--------------Cc-eeecccCCCCeEEEEECCCCCEEEEEeCCCc-EEEEECCCCccccee
Q psy18074          9 ANEDFNLYSYDIRQLN--------------SP-LNVHKDMTSAVTSVDYSPTGREFVAGGYDKS-LRLYLAHQGHSRDIY   72 (197)
Q Consensus         9 ~~~d~~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-v~i~d~~~~~~~~~~   72 (197)
                      |+.||.|++||+....              .+ +..+.+|.+.|.+++|+|++.+|++++.|+. |++||+.+++.+..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            6899999999998632              12 6778899999999999999999999999998 999999999988777


Q ss_pred             ecc-cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eeeccc-----ccc--------ccccccccceecccC
Q psy18074         73 HTK-RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL--GYVNNK-----QRQ--------ALDYSESLKQKYAHH  136 (197)
Q Consensus        73 ~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~-----~~~--------~~~~~~~~v~~~~~s  136 (197)
                      ..+ |...|.+++|+|++++|++++.|+.|++||+..+...  ..+...     ...        ...........++|+
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            534 8899999999999999999999999999999765321  111110     000        000001123568999


Q ss_pred             cccceeeeec-CcceEEeecchhh
Q psy18074        137 PQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       137 ~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++++.|+.+. ++.+.+|+.....
T Consensus       315 ~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CCCCEEEEEeCCCeEEEEEEEcCC
Confidence            9998888655 5577888876544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=153.51  Aligned_cols=157  Identities=13%  Similarity=0.261  Sum_probs=121.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC----------ceeecccCC------------CCeEEEEECCCC--CEEEEEeCCC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS----------PLNVHKDMT------------SAVTSVDYSPTG--REFVAGGYDK   56 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~------------~~v~~~~~sp~~--~~l~~~~~d~   56 (197)
                      .+|.+|++|+.||.|++||+.....          ....+.+|.            ..|.+++|+|++  ..|++++.|+
T Consensus        38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~  117 (447)
T 3dw8_B           38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK  117 (447)
T ss_dssp             SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred             CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence            3789999999999999999985321          466788898            889999999998  7999999999


Q ss_pred             cEEEEECCCCccc---------------------------------------ceeecccccceeEEEEccCCCEEEEEeC
Q psy18074         57 SLRLYLAHQGHSR---------------------------------------DIYHTKRMQHVTHTVWSLDNKFVISASD   97 (197)
Q Consensus        57 ~v~i~d~~~~~~~---------------------------------------~~~~~~~~~~v~~v~~~~~~~~l~~~~~   97 (197)
                      .|++|++.++...                                       ..+..+|...|.+++|+|++++|+++ .
T Consensus       118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  196 (447)
T 3dw8_B          118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D  196 (447)
T ss_dssp             CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred             eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence            9999998764321                                       12235688999999999999999998 7


Q ss_pred             CCcEEEEEcCC-CceeeeeccccccccccccccceecccCccc-ceeeeec-CcceEEeecchhh
Q psy18074         98 EMNLRVWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        98 dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      |+.|++||+.+ ++.+..+... ...+..+...|.+++|+|++ ++|+++. ++.+.+|++...+
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          197 DLRINLWHLEITDRSFNIVDIK-PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             SSEEEEEETTEEEEEEEEEECC-CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             CCeEEEEECCCCCceeeeeecc-cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999999984 3333322111 11233445568999999998 8888665 5589999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=1.6e-22  Score=149.46  Aligned_cols=155  Identities=10%  Similarity=0.108  Sum_probs=124.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceee--cccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYH--TKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~   79 (197)
                      +.+|++|+.|+.|++||+.+ +..+..+.+|...|.+++|+| ++..|++++.||.|++||+.++.....+.  ..|...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            67999999999999999987 577888889999999999999 89999999999999999999988766652  467889


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc--------------------cccccccccccceecccCccc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK--------------------QRQALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------~~~~~~~~~~~v~~~~~s~~~  139 (197)
                      |.+++|+|++++|++++.||.|++||+.+++....+...                    .......+...|.+++|+  +
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            999999999999999999999999999987654433210                    001111245568899998  5


Q ss_pred             ceeeeec-CcceEEeecchhhH
Q psy18074        140 RRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus       140 ~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      .+++++. ++.+.+|+......
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTC
T ss_pred             CEEEEEecCCEEEEEeCCCccc
Confidence            5676554 56889999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=2.9e-22  Score=152.16  Aligned_cols=156  Identities=10%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-------ecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc----c
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-------VHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAHQGHS----R   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~~~~~----~   69 (197)
                      ++.+|++| .|+.|++||++.......       .+.+|...|.+++|+|++ ..|++++.|+.|++||++++..    .
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            68899998 799999999984334333       366899999999999998 8999999999999999998875    3


Q ss_pred             ceeeccccc------------ceeEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeeeeccccccccc----ccccc---
Q psy18074         70 DIYHTKRMQ------------HVTHTVWSLDNKFVISASDEMNLRVWKAHA-SEKLGYVNNKQRQALD----YSESL---  129 (197)
Q Consensus        70 ~~~~~~~~~------------~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~----~~~~~---  129 (197)
                      ..+ ..|..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+..+....-.    +....   
T Consensus       267 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          267 KLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             EEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence            333 34443            8999999999999999998 9999999997 7777777665431100    00011   


Q ss_pred             ceecccCcccceeeeecC-cceEEeecchhhH
Q psy18074        130 KQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHR  160 (197)
Q Consensus       130 v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~  160 (197)
                      +..++|+|++++|++++. +.+.+|+....+.
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            234899999999987765 5789999876544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.89  E-value=3.4e-22  Score=157.15  Aligned_cols=145  Identities=10%  Similarity=0.139  Sum_probs=122.7

Q ss_pred             ccEEEEEcC-CCcEEEEEccCCCCce-eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANE-DFNLYSYDIRQLNSPL-NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +.++++++. |+.|++||+.. .... ..+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+...|...|
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  534 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             CCEEEEeecCCCeEEEEECCC-ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence            678899999 99999999985 3333 66778999999999999999999999999999999999988776633388999


Q ss_pred             eEEEEcc----------CCCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceeeee-cCc
Q psy18074         81 THTVWSL----------DNKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQV  148 (197)
Q Consensus        81 ~~v~~~~----------~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~  148 (197)
                      ++++|+|          ++++|++++.||.|++||+.++ +.+..+.++..        .|.+++|+|+++ |+++ .++
T Consensus       535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~--------~v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--------GVNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--------CEEEEEEEETTE-EEEEETTS
T ss_pred             eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc--------ceEEEEEcCCCC-eEEecCCc
Confidence            9999999          9999999999999999999987 56666655543        478999999999 7654 466


Q ss_pred             ceEEeecch
Q psy18074        149 PRHIYNAQA  157 (197)
Q Consensus       149 ~~~i~~~~~  157 (197)
                      .+.+|++..
T Consensus       606 ~v~iw~~~~  614 (615)
T 1pgu_A          606 CIKRWNVVL  614 (615)
T ss_dssp             CEEEEEEC-
T ss_pred             eEEEEeeec
Confidence            899999753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1e-22  Score=153.23  Aligned_cols=153  Identities=13%  Similarity=0.130  Sum_probs=123.2

Q ss_pred             cEEEEEcCCC---cEEEEEccCCCCceeecc-cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          4 FVFTAANEDF---NLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         4 ~~l~~~~~d~---~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      .++++++.|+   .|++||++....+...+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+ ..|..
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~  306 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PARGN  306 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECSSS
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCCCC
Confidence            6899999998   999999987546777787 8999999999999 8999999999999999999998877666 56778


Q ss_pred             ceeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeecc--------------c------cc-------cccccccccc
Q psy18074         79 HVTHTVWSLDN-KFVISASDEMNLRVWKAHASEKLGYVNN--------------K------QR-------QALDYSESLK  130 (197)
Q Consensus        79 ~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------~------~~-------~~~~~~~~~v  130 (197)
                      .|.+++|+|++ .++++++.|+.|++||+.++........              +      ..       .....+...+
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS  386 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence            99999999998 8999999999999999987654322211              0      00       0011134456


Q ss_pred             eecccCcccceeeeecC-cceEEeecch
Q psy18074        131 QKYAHHPQIRRIARHRQ-VPRHIYNAQA  157 (197)
Q Consensus       131 ~~~~~s~~~~~l~~~~~-~~~~i~~~~~  157 (197)
                      ..++|+|+|++|+++.. ..+.||++..
T Consensus       387 ~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          387 PAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            78999999999998774 5889999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.9e-22  Score=165.42  Aligned_cols=148  Identities=9%  Similarity=-0.036  Sum_probs=116.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCce--ee----cc-----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPL--NV----HK-----DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS--   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~--~~----~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~--   68 (197)
                      |+.+|++|+.|++|++||+... ...  ..    +.     +|...|.+++|+|+++.|++|+.||.|++|++.++..  
T Consensus       446 dg~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          446 YGTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             EEEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             cCcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            6789999999999999999763 211  11    11     7888999999999999999999999999999986631  


Q ss_pred             -------------------------------------------cceeecccccceeEEEEccCCCEEEEEeCCCcEEEEE
Q psy18074         69 -------------------------------------------RDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK  105 (197)
Q Consensus        69 -------------------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd  105 (197)
                                                                 +.. ..+|.+.|++++|+|+| +||+|+.|+.|++||
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE-EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence                                                       122 34588999999999999 999999999999999


Q ss_pred             cCCCceeeeeccccccccc-cccccceecccC-----ccc---ceeeeecC-cceEEeec
Q psy18074        106 AHASEKLGYVNNKQRQALD-YSESLKQKYAHH-----PQI---RRIARHRQ-VPRHIYNA  155 (197)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-----~~~---~~l~~~~~-~~~~i~~~  155 (197)
                      +.++..+.....   ..+. .|...|++++|+     |||   ++|++++. ..+.+|++
T Consensus       603 ~~~~~~~~~~~~---~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          603 RRGPAIIYMENI---REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TTTTEEEEEEEG---GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCCeEEEEeeh---hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            987765432111   1222 455668999999     875   88887665 58899998

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=1.1e-21  Score=143.50  Aligned_cols=147  Identities=12%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.|+.|++||+++ ......+..|...+.+++|+|++..|++++.|+.|++||++++.....+  .+...+.
T Consensus       152 ~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~v~  228 (337)
T 1gxr_A          152 DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIF  228 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCC-CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--cCCCceE
Confidence            678999999999999999987 5777888889999999999999999999999999999999998876665  3557899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      +++|+|+++++++++.++.|++||+.+++.. .+..+.        ..+.+++|+|++++|+++. ++.+.+|+....+.
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE--------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS--------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc--------cceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            9999999999999999999999999887653 333332        3478999999999998766 45789999876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.2e-22  Score=149.88  Aligned_cols=149  Identities=12%  Similarity=0.195  Sum_probs=124.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC------CCCeEEEEECCCC-CEEEEEeCCC---cEEEEECCCCc-ccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM------TSAVTSVDYSPTG-REFVAGGYDK---SLRLYLAHQGH-SRDI   71 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~sp~~-~~l~~~~~d~---~v~i~d~~~~~-~~~~   71 (197)
                      +.+|++++.|+.|++||++. ......+..+      ...+.+++|+|++ ..+++++.|+   .|++||++++. ....
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~  256 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKA-KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT  256 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTT-TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred             CcEEEEEcCCCCEEEEECCC-CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence            68999999999999999987 4666666655      7889999999997 6889999998   99999999864 4444


Q ss_pred             eecccccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccc-ceeeeec-Cc
Q psy18074         72 YHTKRMQHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI-RRIARHR-QV  148 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~  148 (197)
                      +..+|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+..+...        +.+++|+|++ .+|+++. ++
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW--------CFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC--------CCCEEECTTCTTEEEECCSSS
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc--------eEEEEECCCCCCEEEEEecCC
Confidence            4226889999999999 8999999999999999999999888877765543        7899999998 7888666 45


Q ss_pred             ceEEeecchhhH
Q psy18074        149 PRHIYNAQAEHR  160 (197)
Q Consensus       149 ~~~i~~~~~~~~  160 (197)
                      .+.+|++.....
T Consensus       329 ~i~iw~~~~~~~  340 (416)
T 2pm9_A          329 KIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEEESCCCCC
T ss_pred             cEEEEEccCCCC
Confidence            789999876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=2.1e-22  Score=163.27  Aligned_cols=148  Identities=9%  Similarity=0.112  Sum_probs=127.4

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.++++|+.||.|++||+.+ +.....+..|.++|.+++|+|++..|++++.||.|++||+.++.....+ .+|...|
T Consensus        23 p~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v  100 (814)
T 3mkq_A           23 PTEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYI  100 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCE
Confidence            3788999999999999999987 5778888899999999999999999999999999999999999877666 5678899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCc-ccceeeeec-CcceEEeecch
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .+++|+|++++|++++.||.|++||+.++ .....+..+..        .+.+++|+| ++..++++. ++.+.+|+...
T Consensus       101 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--------FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS--------CEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC--------cEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999999999999876 44445544443        378999999 888888665 55889999865


Q ss_pred             h
Q psy18074        158 E  158 (197)
Q Consensus       158 ~  158 (197)
                      .
T Consensus       173 ~  173 (814)
T 3mkq_A          173 S  173 (814)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=6.6e-22  Score=147.70  Aligned_cols=146  Identities=5%  Similarity=0.045  Sum_probs=118.3

Q ss_pred             Cc-cEEEEEcCCCcEEEEEccCCCCceeecc--cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCccccee--ecc
Q psy18074          2 EA-FVFTAANEDFNLYSYDIRQLNSPLNVHK--DMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIY--HTK   75 (197)
Q Consensus         2 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~   75 (197)
                      ++ .+|++|+.|+.|++||+.. ......+.  +|...|.+++|+| ++..|++++.|+.|++||+.... ...+  ...
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~  161 (383)
T 3ei3_B           84 THPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDS  161 (383)
T ss_dssp             SCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCC
T ss_pred             CCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCC
Confidence            45 8999999999999999986 34444443  6999999999999 67899999999999999999643 3333  223


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc-eeeeec-CcceEEe
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIARHR-QVPRHIY  153 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~~~i~  153 (197)
                      |...|.+++|+|++++|++++.|+.|++||+ .++.+..+..+..        .|.+++|+|++. +++++. +..+.+|
T Consensus       162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--------~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--------KVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--------CEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--------cEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence            4477999999999999999999999999999 4666666665544        378999999998 777655 5589999


Q ss_pred             ecchh
Q psy18074        154 NAQAE  158 (197)
Q Consensus       154 ~~~~~  158 (197)
                      ++...
T Consensus       233 d~~~~  237 (383)
T 3ei3_B          233 DLRNI  237 (383)
T ss_dssp             EGGGC
T ss_pred             eCCCC
Confidence            99763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.9e-22  Score=147.09  Aligned_cols=150  Identities=11%  Similarity=0.211  Sum_probs=122.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCc--ccceeecc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGH--SRDIYHTK   75 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~   75 (197)
                      .++.+|++|+.|+.|++||+... ......+.+|...|.+++|+|+  +..|++++.||.|++||+.++.  .... ...
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~   99 (379)
T 3jrp_A           21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV-HAV   99 (379)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-ECC
T ss_pred             CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-ecC
Confidence            36889999999999999999731 3566778899999999999987  8999999999999999999886  3333 355


Q ss_pred             cccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceee--eeccccccccccccccceecccCc-------------c
Q psy18074         76 RMQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLG--YVNNKQRQALDYSESLKQKYAHHP-------------Q  138 (197)
Q Consensus        76 ~~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-------------~  138 (197)
                      |...|.+++|+|+  +.++++++.|+.|++||+.++....  .+..+        ...+.+++|+|             +
T Consensus       100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~  171 (379)
T 3jrp_A          100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH--------AIGVNSASWAPATIEEDGEHNGTKE  171 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC--------TTCEEEEEECCCC----------CT
T ss_pred             CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC--------CCceEEEEEcCccccccccccCCCC
Confidence            7789999999999  9999999999999999998774332  22222        33478999999             6


Q ss_pred             cceeeeec-CcceEEeecchhh
Q psy18074        139 IRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       139 ~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +.+++++. ++.+.+|++....
T Consensus       172 ~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          172 SRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             TCEEEEEETTSCEEEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEEecCCC
Confidence            88888665 5589999987543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=1.2e-21  Score=145.27  Aligned_cols=150  Identities=13%  Similarity=0.183  Sum_probs=121.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc---cceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS---RDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~   77 (197)
                      ++.+|++++.|+.|++||+.... .....+..|...|.+++|+|++..|++++.|+.|++||+..+..   .......|.
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  142 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  142 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence            68899999999999999997632 12333467889999999999999999999999999999988763   233345677


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcC------------------CCceeeeeccccccccccccccceecccCccc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAH------------------ASEKLGYVNNKQRQALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  139 (197)
                      ..|.+++|+|+++++++++.|+.|++||+.                  .++.+..+..+.        ..+.+++|+|++
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~  214 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--------GWVHGVCFSANG  214 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--------SCEEEEEECSSS
T ss_pred             CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC--------CeEEEEEECCCC
Confidence            899999999999999999999999999964                  445555554333        347899999999


Q ss_pred             ceeeeecC-cceEEeecchhh
Q psy18074        140 RRIARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus       140 ~~l~~~~~-~~~~i~~~~~~~  159 (197)
                      .+|+++.. +.+.+|+....+
T Consensus       215 ~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          215 SRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             SEEEEEETTTEEEEEEGGGTT
T ss_pred             CEEEEEeCCCEEEEEECCCCc
Confidence            98887664 578999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=8.3e-22  Score=148.30  Aligned_cols=147  Identities=14%  Similarity=0.258  Sum_probs=123.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++|+.|+.|++||++........+.+|.+.|.+++|+|++..|++++.|+.|++||+.++.....+ ..|...|.
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~  263 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAVK  263 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-CCCSSCCC
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-cCCcceEE
Confidence            46789999999999999998546677888899999999999999999999999999999999988776655 45778999


Q ss_pred             EEEEccCCC-EEEEEe--CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee--e-cCcceEEeec
Q psy18074         82 HTVWSLDNK-FVISAS--DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR--H-RQVPRHIYNA  155 (197)
Q Consensus        82 ~v~~~~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~-~~~~~~i~~~  155 (197)
                      +++|+|++. ++++++  .|+.|++||+.+++.+..+....         .+.+++|+|++..+++  + .++.+.+|+.
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---------CEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---------cEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            999999765 455654  79999999999998887775332         3689999999999987  4 3668899998


Q ss_pred             chh
Q psy18074        156 QAE  158 (197)
Q Consensus       156 ~~~  158 (197)
                      ...
T Consensus       335 ~~~  337 (401)
T 4aez_A          335 SSS  337 (401)
T ss_dssp             ETT
T ss_pred             CCc
Confidence            764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=145.57  Aligned_cols=148  Identities=12%  Similarity=0.230  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccce-eeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRDI-YHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~   76 (197)
                      ++.+|++|+.|+.|++||+.. +.  ....+..|...|.+++|+|+  +..|++++.|+.|++||+..+..... ....|
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  146 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  146 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred             CCCEEEEeccCCEEEEEEcCC-CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence            378999999999999999986 33  56777789999999999999  99999999999999999998754332 23567


Q ss_pred             ccceeEEEEcc-------------CCCEEEEEeCCCcEEEEEcCCCcee----eeeccccccccccccccceecccCcc-
Q psy18074         77 MQHVTHTVWSL-------------DNKFVISASDEMNLRVWKAHASEKL----GYVNNKQRQALDYSESLKQKYAHHPQ-  138 (197)
Q Consensus        77 ~~~v~~v~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~-  138 (197)
                      ...|.+++|+|             ++.++++++.|+.|++||++++...    ..+..+        ...|.+++|+|+ 
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--------~~~v~~~~~sp~~  218 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--------SDWVRDVAWSPTV  218 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--------SSCEEEEEECCCC
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--------cCcEeEEEECCCC
Confidence            78999999999             6999999999999999999876533    233333        344789999999 


Q ss_pred             --cceeeeec-CcceEEeecchh
Q psy18074        139 --IRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       139 --~~~l~~~~-~~~~~i~~~~~~  158 (197)
                        +.+|+++. ++.+.+|+....
T Consensus       219 ~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             SSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCeEEEEeCCCEEEEEeCCCC
Confidence              88888766 558899998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=8.8e-22  Score=147.03  Aligned_cols=146  Identities=13%  Similarity=0.122  Sum_probs=118.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccC---CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDM---TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      ++.+|++++.|+.|++||+..  .....+..+   ...|.+++|+|++..|++++.|+.|++||++ +.....+ ..|..
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~h~~  205 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE-KLHKA  205 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE-ECSSS
T ss_pred             CCCEEEEEeCCCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe-ccCCC
Confidence            568999999999999999984  445555443   4789999999999999999999999999995 5544444 56788


Q ss_pred             ceeEEEEccCCC-EEEEEeCCCcEEEEEcCC----CceeeeeccccccccccccccceecccCc-ccceeeeec-CcceE
Q psy18074         79 HVTHTVWSLDNK-FVISASDEMNLRVWKAHA----SEKLGYVNNKQRQALDYSESLKQKYAHHP-QIRRIARHR-QVPRH  151 (197)
Q Consensus        79 ~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~~~  151 (197)
                      .|.+++|+|+++ ++++++.|+.|++||+++    +..+..+ .+        ...+.+++|+| ++++|+++. ++.+.
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH--------EKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC--------SSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC--------CCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            999999999999 899999999999999987    4444444 22        23478999999 999999766 45889


Q ss_pred             EeecchhhH
Q psy18074        152 IYNAQAEHR  160 (197)
Q Consensus       152 i~~~~~~~~  160 (197)
                      +|++...+.
T Consensus       277 iwd~~~~~~  285 (383)
T 3ei3_B          277 VYSSYDWSK  285 (383)
T ss_dssp             EEETTBTTS
T ss_pred             EEECCCCcc
Confidence            999876544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=8.3e-22  Score=150.60  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=126.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++|+.|+.|++||+.+ ..++..+.+|...|.+++|+|++..+++++.|+.|++||+.++..+..+ .+|...|.
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~  356 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-QGHTALVG  356 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-eCCCCcEE
Confidence            467899999999999999987 5778888899999999999999999999999999999999999877766 56888999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      +++|+  ++++++++.||.|++||+.++..........         .+..++|++++++++++.++.+.+|+....+.
T Consensus       357 ~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          357 LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTN---------LSAITTFYVSDNILVSGSENQFNIYNLRSGKL  424 (464)
T ss_dssp             EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTT---------CCCEEEEEECSSEEEEEETTEEEEEETTTCCE
T ss_pred             EEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCC---------CccEEEEEeCCCEEEEecCCeEEEEECCCCcE
Confidence            99997  5799999999999999999877655443222         24678899999999999888999999876644

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1e-21  Score=145.14  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=125.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++||+.+ +.....+.+|...|.+++|+|++..|++++.|+.|++||+.++.....+.  +...+
T Consensus        42 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v  118 (369)
T 3zwl_B           42 KEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPV  118 (369)
T ss_dssp             TTSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCe
Confidence            3788999999999999999987 57788899999999999999999999999999999999999998877764  56899


Q ss_pred             eEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeccc---cccccccccc--cceecccCcccceeeeecC-cc
Q psy18074         81 THTVWSLDNKFVISASDE-----MNLRVWKAHASEKLGYVNNK---QRQALDYSES--LKQKYAHHPQIRRIARHRQ-VP  149 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~-~~  149 (197)
                      .+++|+|+++++++++.+     +.|.+||+..+.....+...   ....+..+..  .+.+++|+|++++++++.. +.
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  198 (369)
T 3zwl_B          119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK  198 (369)
T ss_dssp             EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred             EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence            999999999999999998     99999999866433222111   1111112222  5789999999999987654 57


Q ss_pred             eEEeecch
Q psy18074        150 RHIYNAQA  157 (197)
Q Consensus       150 ~~i~~~~~  157 (197)
                      +.+|+...
T Consensus       199 i~i~d~~~  206 (369)
T 3zwl_B          199 ISKYDVSN  206 (369)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            89999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1e-21  Score=145.20  Aligned_cols=153  Identities=8%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeeccc-----CCCCeEEEEECCC----CCEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKD-----MTSAVTSVDYSPT----GREFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~sp~----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      ..+++++.++.|++||+.+ +..+..+..     |...|.+++|+|+    +.+|++++.||.|++||+.+++....+ .
T Consensus        35 ~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~  112 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-V  112 (366)
T ss_dssp             CEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-E
T ss_pred             ceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-c
Confidence            3455555567999999986 344444432     5678999999998    668999999999999999998877665 5


Q ss_pred             ccccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEE
Q psy18074         75 KRMQHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHI  152 (197)
Q Consensus        75 ~~~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i  152 (197)
                      +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+...     ..+...|.+++|+|++.+|+++. ++.+.+
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  187 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-----EGHRDEVLSADYDLLGEKIMSCGMDHSLKL  187 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-----TSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-----ccccCceeEEEECCCCCEEEEecCCCCEEE
Confidence            6889999999999 8999999999999999999998887776210     11223478999999999998765 558999


Q ss_pred             eecchhhHHHH
Q psy18074        153 YNAQAEHRAIR  163 (197)
Q Consensus       153 ~~~~~~~~~~~  163 (197)
                      |+....+....
T Consensus       188 ~d~~~~~~~~~  198 (366)
T 3k26_A          188 WRINSKRMMNA  198 (366)
T ss_dssp             EESCSHHHHHH
T ss_pred             EECCCCccccc
Confidence            99987655433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.3e-21  Score=145.92  Aligned_cols=147  Identities=13%  Similarity=0.136  Sum_probs=123.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+|++|+.||.|++||+.+ +..+..+.+|...|.++.|  ++..+++++.|+.|++||++...........|...|.
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  221 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC  221 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             CCCEEEEECCCCeEEEEECcC-CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence            688999999999999999987 5778888899999999999  5679999999999999999954433333467889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc-eeeeec---CcceEEeecch
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIARHR---QVPRHIYNAQA  157 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~~~~i~~~~~  157 (197)
                      +++|+|++++|++++.|+.|++||+.+++.+..+..+..        .|.+++|+|++. +++++.   +..+.+|+...
T Consensus       222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA--------AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS--------CCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc--------eEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            999999999999999999999999999888777765544        378999999765 555543   66899999875


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      .+
T Consensus       294 ~~  295 (401)
T 4aez_A          294 GA  295 (401)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.89  E-value=5.5e-22  Score=146.25  Aligned_cols=156  Identities=13%  Similarity=0.184  Sum_probs=120.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC---CCCEEEEEeCCCcEEEEECCCCcccceee----c
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP---TGREFVAGGYDKSLRLYLAHQGHSRDIYH----T   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~   74 (197)
                      ++.++++++.|+.|++||++. ... .....|...+.+++|+|   ++..+++++.||.|++||++++.....+.    .
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  256 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK  256 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence            678999999999999999986 343 34467889999999999   89999999999999999999877655442    3


Q ss_pred             ccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeecc-----------ccccccccccccceecccCccccee
Q psy18074         75 KRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLGYVNN-----------KQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      .|...|.+++|+|+++ ++++++.||.|++||+.++........           .....+..+...|.+++|+|++++|
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            6889999999999998 799999999999999986543211100           0011223334568999999999998


Q ss_pred             e-eec-CcceEEeecchhh
Q psy18074        143 A-RHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       143 ~-~~~-~~~~~i~~~~~~~  159 (197)
                      + +++ ++.+.+|++.+..
T Consensus       337 ~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          337 CVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEETTSEEEEEEECC--
T ss_pred             EEEecCCCcEEEEECCCcc
Confidence            7 555 6689999987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=9.8e-22  Score=150.00  Aligned_cols=148  Identities=7%  Similarity=0.042  Sum_probs=122.5

Q ss_pred             CccEE-EEEcCCCcEEEEEcc--CCCCceeecc--cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc---eee
Q psy18074          2 EAFVF-TAANEDFNLYSYDIR--QLNSPLNVHK--DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD---IYH   73 (197)
Q Consensus         2 ~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~---~~~   73 (197)
                      ++.+| ++|+.|+.|++||+.  . +.....+.  .|...|.+++|+|++..|++++.+|.+++|++.++....   ...
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~  191 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI  191 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS
T ss_pred             CCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee
Confidence            56775 899999999999998  5 56666665  567899999999999999999999999999998876543   122


Q ss_pred             cccccceeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeec-cccccccccccccceecccCcccceeeeecC-c
Q psy18074         74 TKRMQHVTHTVWSLD---NKFVISASDEMNLRVWKAHASEKLGYVN-NKQRQALDYSESLKQKYAHHPQIRRIARHRQ-V  148 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  148 (197)
                      .+|...|.+++|+|+   +++|++++.|+.|++||+.+++.+..+. ++.        ..|.+++|+ ++++|++++. .
T Consensus       192 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--------~~v~~~~~s-d~~~l~s~~~d~  262 (450)
T 2vdu_B          192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--------HFVSSICCG-KDYLLLSAGGDD  262 (450)
T ss_dssp             EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--------SCEEEEEEC-STTEEEEEESSS
T ss_pred             ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--------CceEEEEEC-CCCEEEEEeCCC
Confidence            567789999999999   9999999999999999999888776633 333        347899999 9999997664 5


Q ss_pred             ceEEeecchhh
Q psy18074        149 PRHIYNAQAEH  159 (197)
Q Consensus       149 ~~~i~~~~~~~  159 (197)
                      .+.+|++...+
T Consensus       263 ~v~vwd~~~~~  273 (450)
T 2vdu_B          263 KIFAWDWKTGK  273 (450)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEECCCCc
Confidence            88999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.8e-22  Score=152.16  Aligned_cols=144  Identities=12%  Similarity=0.100  Sum_probs=115.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCC-----CeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS-----AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS-------   68 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~-------   68 (197)
                      .||..||+++.||.|++||...   .+..+. |..     .+.+++|||+|+.|++|+.||.|++||+.++..       
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~  170 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYF  170 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccccee
Confidence            4789999999999999999542   455555 665     499999999999999999999999999998753       


Q ss_pred             ccee---ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eeec-cccccccccccccceecccCcccce
Q psy18074         69 RDIY---HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL---GYVN-NKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        69 ~~~~---~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      +..+   ..+|...|.+++|+|+|  +++++.|+.+++||+..+...   .++. ++.        ..|.+++|+  |+.
T Consensus       171 l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~--------~~V~svaFs--g~~  238 (588)
T 2j04_A          171 ESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR--------RKITDLKIV--DYK  238 (588)
T ss_dssp             EEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS--------SCCCCEEEE--TTE
T ss_pred             eeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc--------CcEEEEEEE--CCE
Confidence            2333   25677899999999999  788899999999999876632   2342 332        237899999  688


Q ss_pred             eeeecCcceEEeecchhhH
Q psy18074        142 IARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus       142 l~~~~~~~~~i~~~~~~~~  160 (197)
                      ||++.++.+.+|+....+.
T Consensus       239 LASa~~~tIkLWd~~~~~~  257 (588)
T 2j04_A          239 VVLTCPGYVHKIDLKNYSI  257 (588)
T ss_dssp             EEEECSSEEEEEETTTTEE
T ss_pred             EEEEeCCeEEEEECCCCeE
Confidence            8888788999999875544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=2.1e-21  Score=142.37  Aligned_cols=147  Identities=11%  Similarity=0.154  Sum_probs=126.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC--CEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG--REFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++.+|++|+.|+.+++||..........+.+|...+..++|++++  ..+++++.|+.|++||+.++.....+ .+|...
T Consensus       139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~  217 (340)
T 4aow_A          139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-IGHTGY  217 (340)
T ss_dssp             TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-CCCSSC
T ss_pred             cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-cCCCCc
Confidence            567899999999999999976444455667889999999999865  46789999999999999998876665 668899


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      |.+++|+|++++|++++.|+.|++||+.+.+.+..+..+..         +.+++|+|++.+++++.+..+.+|++...
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI---------INALCFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC---------EEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce---------EEeeecCCCCceeeccCCCEEEEEECCCC
Confidence            99999999999999999999999999999988877765432         68999999999999888889999998644

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=2.1e-21  Score=147.39  Aligned_cols=148  Identities=17%  Similarity=0.291  Sum_probs=118.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCc-ccceeecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGH-SRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~   77 (197)
                      ++.+|++++.|+.|++||++...  .+...+..|...|.+++|+|++. .|++|+.||.|++||++... .+..+ ..|.
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~  321 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHK  321 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCC
Confidence            57899999999999999998642  56677788999999999999987 68899999999999999844 33343 5678


Q ss_pred             cceeEEEEccCCC-EEEEEeCCCcEEEEEcCCC--------------ceeeeeccccccccccccccceecccCcccc-e
Q psy18074         78 QHVTHTVWSLDNK-FVISASDEMNLRVWKAHAS--------------EKLGYVNNKQRQALDYSESLKQKYAHHPQIR-R  141 (197)
Q Consensus        78 ~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~  141 (197)
                      ..|.+++|+|+++ ++++++.|+.|++||+...              +.+....+        +...|.+++|+|++. +
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~~  393 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWI  393 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--------CSSCEEEEEECSSSTTE
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--------CCCCceEEEECCCCCCE
Confidence            8999999999985 6889999999999999862              22222222        234589999999998 6


Q ss_pred             eeeec-CcceEEeecchh
Q psy18074        142 IARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       142 l~~~~-~~~~~i~~~~~~  158 (197)
                      |+++. ++.+.||+....
T Consensus       394 l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          394 ICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEETTSEEEEEEECHH
T ss_pred             EEEEECCCCEEEeEcccc
Confidence            66555 557899998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=4.5e-22  Score=149.54  Aligned_cols=154  Identities=11%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccee--------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHSRDIY--------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~~~~~--------   72 (197)
                      |+++||+|+.|++|++||+.. ..+...+..|...+.+++|+|++. +|++++.|+.|++||++++......        
T Consensus       155 d~~~las~s~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCEEEEEECCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence            678999999999999999986 456667778899999999999875 7899999999999999876532211        


Q ss_pred             ----------------ecccccceeEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeecccc----------------
Q psy18074         73 ----------------HTKRMQHVTHTVWS-LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ----------------  119 (197)
Q Consensus        73 ----------------~~~~~~~v~~v~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------------  119 (197)
                                      ..+|...+.++.|+ |+++.+++++.|+.+++||+.+++....+..+.                
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS  313 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence                            13466788899986 799999999999999999986544322211100                


Q ss_pred             --------------------------------------ccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074        120 --------------------------------------RQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       120 --------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                                                            ...+..+...|.+++|+|||++||+++++.+.+|.+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence                                                  0111222336778888888888888888777777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.7e-21  Score=148.65  Aligned_cols=154  Identities=14%  Similarity=0.118  Sum_probs=126.1

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC---ceeecccCCCCeEEEEECCC---CCEEEEEeCCCcEEEEECCCCcccceeec
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS---PLNVHKDMTSAVTSVDYSPT---GREFVAGGYDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      .++.+|++|+.++.|++|++.....   +...+.+|...|.+++|+|+   +.+|++++.|+.|++||+.++..+..+..
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence            3688999999999999999976321   33367889999999999999   88999999999999999999887766556


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-ccc----------------ccccccceecccCc
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QAL----------------DYSESLKQKYAHHP  137 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~----------------~~~~~~v~~~~~s~  137 (197)
                      +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+.. ..+                ......+..++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            788999999999 999999999999999999999988777653321 000                01123578899999


Q ss_pred             ccceeeeec--CcceEEeec
Q psy18074        138 QIRRIARHR--QVPRHIYNA  155 (197)
Q Consensus       138 ~~~~l~~~~--~~~~~i~~~  155 (197)
                      ++++|+++.  +..+.+|++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEe
Confidence            999998664  558899998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=1.8e-21  Score=147.37  Aligned_cols=148  Identities=16%  Similarity=0.239  Sum_probs=121.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECCCCC-EEEE--EeCCCcEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSPTGR-EFVA--GGYDKSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~~-~l~~--~~~d~~v~i~d~~~~~~~~~~~~~   75 (197)
                      ++.++++++.|+.+++|+.....   ..+.....|...|.+++|+|.+. .+++  |+.|+.|++||+.++.+...+.. 
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-  319 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-  319 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-
Confidence            67899999999999999997532   24556678899999999999765 4444  45799999999999988776633 


Q ss_pred             cccceeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEE
Q psy18074         76 RMQHVTHTVWSLDNKFVISAS--DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHI  152 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i  152 (197)
                       ...+.++.|+|+++.+++++  .|+.|++||+.+++.+..+.+|...        |.+++|+|||++|++++. ..+.|
T Consensus       320 -~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~--------V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          320 -HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR--------VLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             -SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC--------EEEEEECTTSSCEEEEETTTEEEE
T ss_pred             -ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC--------EEEEEEcCCCCEEEEEecCCeEEE
Confidence             36899999999999988654  7899999999999999888877654        789999999999997765 58999


Q ss_pred             eecchhh
Q psy18074        153 YNAQAEH  159 (197)
Q Consensus       153 ~~~~~~~  159 (197)
                      |++....
T Consensus       391 Wdv~~~~  397 (420)
T 4gga_A          391 WRCFELD  397 (420)
T ss_dssp             ECCSCSS
T ss_pred             EECCCCC
Confidence            9986543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=9.8e-22  Score=147.11  Aligned_cols=156  Identities=12%  Similarity=0.101  Sum_probs=122.8

Q ss_pred             CccE-EEEEcCCCcEEEEEccC------CCCcee-----ec-------ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q psy18074          2 EAFV-FTAANEDFNLYSYDIRQ------LNSPLN-----VH-------KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL   62 (197)
Q Consensus         2 ~~~~-l~~~~~d~~i~i~d~~~------~~~~~~-----~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d   62 (197)
                      ++.+ |++++.|+.|++||+..      . ..+.     .+       ..|...+.+++|+|++ .+++++.|+.|++||
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            5777 99999999999999985      2 2333     45       4478899999999999 999999999999999


Q ss_pred             CCCCcccceeecc---c---ccceeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeecccccc--cc---ccccc
Q psy18074         63 AHQGHSRDIYHTK---R---MQHVTHTVWSLDNKFVISASDE---MNLRVWKAHASEKLGYVNNKQRQ--AL---DYSES  128 (197)
Q Consensus        63 ~~~~~~~~~~~~~---~---~~~v~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~--~~---~~~~~  128 (197)
                      ++++..+..+ ..   |   ...|.+++|+|++++|++++.|   +.|++||+.+++.+..+......  ..   ..+..
T Consensus       214 ~~~~~~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          214 LSTLRPLYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             TTTTEEEEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             CCCCceeEEE-eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            9998776665 34   6   7899999999999999999999   99999999999888777651000  00   00233


Q ss_pred             cceecccCcccceeeeec-CcceEEeecchhhH
Q psy18074        129 LKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus       129 ~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      .|.+++|+|++++|+++. ++.+.+|++...+.
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  325 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence            478999999999999766 45789999876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-21  Score=145.25  Aligned_cols=145  Identities=15%  Similarity=0.240  Sum_probs=126.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ..+++++.++.|++||+.. ..+...+..|...|.+++|+|++..|++++.|+.|++||+.++.....+ ..|...|.++
T Consensus       218 ~~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~  295 (425)
T 1r5m_A          218 DKFVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF-YGHSQSIVSA  295 (425)
T ss_dssp             TEEEEECGGGCEEEEETTC-SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE-CCCSSCEEEE
T ss_pred             CEEEEEcCCCeEEEEEcCC-CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe-cCCCccEEEE
Confidence            4688899999999999987 5777788899999999999999999999999999999999988776665 4577899999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      +|+|++ ++++++.|+.|++||+.+++.+..+..+..        .+.+++|+|++++|+++. ++.+.+|++...+
T Consensus       296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--------CEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--------cEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999 999999999999999999988877765543        378999999999999766 4589999997665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=3.4e-21  Score=147.25  Aligned_cols=155  Identities=15%  Similarity=0.198  Sum_probs=123.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++|+.||.|++||+.+ +..+..+.+|.+.|.+++|+|++ .+++++.||.|++||+.++.....+ .+|...|.
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~  207 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVR  207 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEE
T ss_pred             CCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccE
Confidence            578999999999999999987 57788899999999999999987 8999999999999999999877665 56888999


Q ss_pred             EEEEc--cCCCEEEEEeCCCcEEEEEcCCCceee-----------------------eecccc-----------------
Q psy18074         82 HTVWS--LDNKFVISASDEMNLRVWKAHASEKLG-----------------------YVNNKQ-----------------  119 (197)
Q Consensus        82 ~v~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------------------~~~~~~-----------------  119 (197)
                      +++|+  ++++++++++.|+.|++||+.++....                       .+.++.                 
T Consensus       208 ~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  287 (464)
T 3v7d_B          208 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS  287 (464)
T ss_dssp             EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence            99998  477889999999999999987654221                       111110                 


Q ss_pred             ---------------ccccccccccceecccCcccceeeeecC-cceEEeecchhh
Q psy18074        120 ---------------RQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus       120 ---------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~  159 (197)
                                     ...+..+...+.+++|+|++.++++++. +.+.+|+....+
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence                           0112234557889999999999987665 588999987553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=1e-20  Score=143.63  Aligned_cols=147  Identities=13%  Similarity=0.188  Sum_probs=117.4

Q ss_pred             cc-EEEEEcCCCcEEEEEccCCCC------ceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCc---ccce
Q psy18074          3 AF-VFTAANEDFNLYSYDIRQLNS------PLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGH---SRDI   71 (197)
Q Consensus         3 ~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~---~~~~   71 (197)
                      +. +|++|+.||.|++||+.....      +...+..|...|.+++|+| ++..|++++.|+.|++||++++.   ....
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            44 899999999999999985221      1455678999999999999 67889999999999999999873   3333


Q ss_pred             eecccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCC-CceeeeeccccccccccccccceecccCcccc-eeeee-cC
Q psy18074         72 YHTKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHA-SEKLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIARH-RQ  147 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~  147 (197)
                      + ..|...|++++|+|++. ++++++.||.|++||+++ +..+..+..+..        .|.+++|+|++. +++++ .+
T Consensus       273 ~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~--------~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          273 V-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD--------EIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             E-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS--------CEEEEEECSSCTTEEEEEETT
T ss_pred             e-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC--------CEEEEEECCCCCCEEEEEeCC
Confidence            3 46778999999999987 588999999999999997 445555555443        478999999985 46554 46


Q ss_pred             cceEEeecchh
Q psy18074        148 VPRHIYNAQAE  158 (197)
Q Consensus       148 ~~~~i~~~~~~  158 (197)
                      +.+.||++...
T Consensus       344 ~~i~iwd~~~~  354 (430)
T 2xyi_A          344 RRLHVWDLSKI  354 (430)
T ss_dssp             SCCEEEEGGGT
T ss_pred             CcEEEEeCCCC
Confidence            68999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.87  E-value=4.9e-22  Score=148.01  Aligned_cols=173  Identities=10%  Similarity=-0.044  Sum_probs=123.3

Q ss_pred             CccEEEE--EcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce-eeccccc
Q psy18074          2 EAFVFTA--ANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI-YHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~   78 (197)
                      ||+++++  ++.|+.|++||+.+ ..+...+ .|.+.|.+++|+|+|.++++++.+ .+.+|+..++..... ....|..
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~-~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSD-LTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTT-TEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred             CCCEEEEEECCCCCEEEEeECCC-CcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence            6777654  45789999999987 4556665 478899999999999999998855 467777777665433 3456778


Q ss_pred             ceeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEe
Q psy18074         79 HVTHTVWSLDNKFVISASDEM----NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIY  153 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~  153 (197)
                      .|.+++|+|+++++++++.++    .+.+|++..........    ..+..+...|.+++|+|||++||+++. ..+.||
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw  296 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS----KQVTNRFKGITSMDVDMKGELAVLASNDNSIALV  296 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE----EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee----eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence            899999999999999988776    58889987654322110    111222344789999999999997765 589999


Q ss_pred             ecchhhHHHHh-HhHhhhhhhhcCCCCCC
Q psy18074        154 NAQAEHRAIRS-KQKRKESNKRTHSAPGT  181 (197)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  181 (197)
                      ++...+..... .-+........+++.+.
T Consensus       297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~  325 (365)
T 4h5i_A          297 KLKDLSMSKIFKQAHSFAITEVTISPDST  325 (365)
T ss_dssp             ETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred             ECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence            99766543322 22344455566666554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.7e-21  Score=150.02  Aligned_cols=148  Identities=5%  Similarity=0.028  Sum_probs=110.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC----------------------------CCceeecc-cCCCCeEEEEECCCCCEEEE
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL----------------------------NSPLNVHK-DMTSAVTSVDYSPTGREFVA   51 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~----------------------------~~~~~~~~-~~~~~v~~~~~sp~~~~l~~   51 (197)
                      .||.++|+++.|++|+  |....                            .+....+. .|...|.+++|||+|..|++
T Consensus        25 pDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs  102 (588)
T 2j04_A           25 RDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAV  102 (588)
T ss_dssp             TTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEE
T ss_pred             CCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEE
Confidence            4899999999999994  32211                            01111122 45678999999999999999


Q ss_pred             EeCCCcEEEEECCCCcccceeeccccc-----ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce-------eeeecccc
Q psy18074         52 GGYDKSLRLYLAHQGHSRDIYHTKRMQ-----HVTHTVWSLDNKFVISASDEMNLRVWKAHASEK-------LGYVNNKQ  119 (197)
Q Consensus        52 ~~~d~~v~i~d~~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~  119 (197)
                      ++.||.|++||...  ++..+ . |..     .+.+++|||||++|++|+.||.|++||+.++..       +.++..+.
T Consensus       103 ~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~  178 (588)
T 2j04_A          103 LSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD  178 (588)
T ss_dssp             EETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC
T ss_pred             EeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc
Confidence            99999999999654  33333 2 433     599999999999999999999999999988752       34442222


Q ss_pred             ccccccccccceecccCcccceeeeecCcceEEeecchhh
Q psy18074        120 RQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       120 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~  159 (197)
                          ..|.++|.+++|+||| .++++.+..+.+|++...+
T Consensus       179 ----~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          179 ----AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             ----TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred             ----ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence                1234568999999999 7777888899999986544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=3.6e-21  Score=141.90  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=121.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC----CeEEEE----ECCCCCEEEEEeCCCcEEEEECCCCcccceee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS----AVTSVD----YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~v~~~~----~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~   73 (197)
                      ++.+|++++.|+.|++||+.....+...+..|.+    .+.+++    |+|++..+++++.|+.|++||++++.....  
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--  205 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--  205 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--
Confidence            5779999999999999999874446777766554    788888    789999999999999999999999876443  


Q ss_pred             cccccceeEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc-eeeeec-Cc
Q psy18074         74 TKRMQHVTHTVWSL---DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR-RIARHR-QV  148 (197)
Q Consensus        74 ~~~~~~v~~v~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~  148 (197)
                      ..|...|.+++|+|   ++.++++++.||.|++||+++++....+...   .+..+...+.+++|+|++. +++++. ++
T Consensus       206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQVRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence            45678999999999   9999999999999999999877655444311   1112334578999999998 677655 55


Q ss_pred             ceEEeecchhh
Q psy18074        149 PRHIYNAQAEH  159 (197)
Q Consensus       149 ~~~i~~~~~~~  159 (197)
                      .+.+|++....
T Consensus       283 ~i~iwd~~~~~  293 (357)
T 3i2n_A          283 GLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEEECCS
T ss_pred             cEEEeecCCCc
Confidence            88999987543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.1e-21  Score=158.29  Aligned_cols=154  Identities=12%  Similarity=0.147  Sum_probs=123.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc----------ee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD----------IY   72 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~----------~~   72 (197)
                      +.+|++++.|+.|++||+.+ ++.+..+. |.+.|++++|+|++.++++|+.||.|++||+.++.+..          ..
T Consensus        69 g~~L~S~s~D~~v~lWd~~~-~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYS-QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTT-CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred             CCEEEEEECcCeEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence            56899999999999999987 46666664 67899999999999999999999999999999876531          11


Q ss_pred             ecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecccccc----------ccccccccceecccCcccce
Q psy18074         73 HTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ----------ALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~  141 (197)
                      ..+|...|.+++|+|+ +..+++++.|+.| +||+.+++.+..+..+...          ....+...|.+++|+|+|++
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            2457789999999996 5788999999999 9999999888777654110          11122356899999999999


Q ss_pred             eeeecC-cceEEeecchhh
Q psy18074        142 IARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus       142 l~~~~~-~~~~i~~~~~~~  159 (197)
                      |++++. +.+.+|+....+
T Consensus       226 lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEEEETTCCEEEEETTTCC
T ss_pred             EEEEECCCeEEEEECCCCc
Confidence            997664 589999987643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=9.1e-21  Score=140.04  Aligned_cols=137  Identities=12%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEE--CCCCCEEEEEeCCCcEEEEECCCCccccee-------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDY--SPTGREFVAGGYDKSLRLYLAHQGHSRDIY-------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------   72 (197)
                      ++.+|++++.|+.|++||+.. .... .+..|...|.+++|  +|++..|++++.|+.|++||++++.....+       
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  174 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSS-NQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY  174 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTT-TEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred             CCCEEEEEcCCCcEEEEEcCC-CCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence            688999999999999999986 3433 46679999999999  999999999999999999999765432111       


Q ss_pred             --------------------------------------------------------------------------------
Q psy18074         73 --------------------------------------------------------------------------------   72 (197)
Q Consensus        73 --------------------------------------------------------------------------------   72 (197)
                                                                                                      
T Consensus       175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          175 CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             EEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence                                                                                            


Q ss_pred             --eccccc------------ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc
Q psy18074         73 --HTKRMQ------------HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ  138 (197)
Q Consensus        73 --~~~~~~------------~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  138 (197)
                        ...|..            .|.+++|+|++++|++++.||.|++||+.+++.+..+..+..        .|.+++|+|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~  326 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--------PISACCFNHN  326 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--------CEEEEEECTT
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--------CceEEEECCC
Confidence              011222            599999999999999999999999999999988887766544        3789999999


Q ss_pred             cceeeeecCc
Q psy18074        139 IRRIARHRQV  148 (197)
Q Consensus       139 ~~~l~~~~~~  148 (197)
                      +++|++++.+
T Consensus       327 g~~l~~~s~d  336 (368)
T 3mmy_A          327 GNIFAYASSY  336 (368)
T ss_dssp             SSCEEEEECC
T ss_pred             CCeEEEEecc
Confidence            9999977643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=9.4e-21  Score=140.56  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=110.6

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC-----------------------------------CEE
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG-----------------------------------REF   49 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-----------------------------------~~l   49 (197)
                      ++++|+.|+.|++||..+ +.++..+. +...|.++.++++.                                   ..+
T Consensus        73 ~~~~~~~d~~v~iWd~~~-~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~l  150 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVK-KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLL  150 (355)
T ss_dssp             EEEECSSTTEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEE
T ss_pred             EEEEECCccEEEEEECCC-CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEE
Confidence            336678889999999986 56666664 56788888887753                                   233


Q ss_pred             EE--EeCCCcEEEEECCCCcc----------------cceeecccccceeEEEEccCCCEEEEEeCCCc-EEEEEcCCCc
Q psy18074         50 VA--GGYDKSLRLYLAHQGHS----------------RDIYHTKRMQHVTHTVWSLDNKFVISASDEMN-LRVWKAHASE  110 (197)
Q Consensus        50 ~~--~~~d~~v~i~d~~~~~~----------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~vwd~~~~~  110 (197)
                      ++  |+.+|.|++||+.++..                ... ..+|...|.+++|+|+|++|++++.|++ |++||+.+++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~-~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL-IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEE-ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE-EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            33  46788899999887541                222 3678899999999999999999999998 9999999999


Q ss_pred             eeeeec-c-ccccccccccccceecccCcccceeeeecC-cceEEeecchh
Q psy18074        111 KLGYVN-N-KQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus       111 ~~~~~~-~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                      .+..+. + +..        .|.+++|+|++++|++++. ..+.||++...
T Consensus       230 ~~~~~~~g~h~~--------~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          230 LVREFRRGLDRA--------DVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEECTTCCS--------CEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEEcCCCCC--------cEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            888876 3 332        3789999999999997765 58899998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.6e-21  Score=143.71  Aligned_cols=150  Identities=9%  Similarity=0.027  Sum_probs=118.7

Q ss_pred             CccEEEEEcCCCcEEEEEccC--CCCceeecc----------c--CCCCeEEEE--ECCCCCEEEEEeCCCcEEEEECCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQ--LNSPLNVHK----------D--MTSAVTSVD--YSPTGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~----------~--~~~~v~~~~--~sp~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      ++.+|++|+.|+.|++||+..  .+.....+.          .  +...+.++.  ++|++..|++++.|+.|++||+++
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            678999999999999999941  123222221          1  455677776  678899999999999999999999


Q ss_pred             Ccccceeecc-cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cccccccccccccceec----ccCccc
Q psy18074         66 GHSRDIYHTK-RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN-NKQRQALDYSESLKQKY----AHHPQI  139 (197)
Q Consensus        66 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~----~~s~~~  139 (197)
                      +..+..+... |...|.+++|+|++++|++++.||.|++||+++++.+..+. .+..        .|.++    .|+|++
T Consensus       202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~s~~~  273 (437)
T 3gre_A          202 LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA--------PITHVEVCQFYGKNS  273 (437)
T ss_dssp             CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE--------EEEEEEECTTTCTTE
T ss_pred             CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC--------ceEEEEeccccCCCc
Confidence            9887776432 77899999999999999999999999999999988887765 3332        25677    677789


Q ss_pred             ceeeeecCc-ceEEeecchhh
Q psy18074        140 RRIARHRQV-PRHIYNAQAEH  159 (197)
Q Consensus       140 ~~l~~~~~~-~~~i~~~~~~~  159 (197)
                      .+|+++..+ .+.+|++...+
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTTE
T ss_pred             cEEEEEcCCCcEEEEEcCCCc
Confidence            899977655 79999997654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1e-20  Score=152.76  Aligned_cols=148  Identities=13%  Similarity=0.242  Sum_probs=122.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcccc-eeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHSRD-IYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~   76 (197)
                      ++.+|++|+.||.|++||+.+ +.  ....+..|...|.+++|+|+  +..+++++.||.|++||+.++.... ....+|
T Consensus        66 ~~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           66 FGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             SCSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence            388999999999999999986 33  56777889999999999999  9999999999999999999874322 224567


Q ss_pred             ccceeEEEEcc-------------CCCEEEEEeCCCcEEEEEcCCCce----eeeeccccccccccccccceecccCcc-
Q psy18074         77 MQHVTHTVWSL-------------DNKFVISASDEMNLRVWKAHASEK----LGYVNNKQRQALDYSESLKQKYAHHPQ-  138 (197)
Q Consensus        77 ~~~v~~v~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~-  138 (197)
                      ...|.+++|+|             ++.++++++.||.|++||++++..    ...+.++.        ..|.+++|+|+ 
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~--------~~V~~l~~sp~~  216 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--------DWVRDVAWSPTV  216 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--------SCEEEEEECCCC
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC--------CcEEEEEeccCC
Confidence            88999999999             589999999999999999987643    33333333        44789999999 


Q ss_pred             --cceeeeec-CcceEEeecchh
Q psy18074        139 --IRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       139 --~~~l~~~~-~~~~~i~~~~~~  158 (197)
                        +.++++++ ++.+.+|+....
T Consensus       217 ~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          217 LLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             SSSEEEEEEESSSCEEEEEESSS
T ss_pred             CCCCEEEEEecCCEEEEecCCCC
Confidence              89888766 458899998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=8.8e-21  Score=153.79  Aligned_cols=151  Identities=14%  Similarity=0.241  Sum_probs=129.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .++.++++++.|+.|++||+.........+.+|...|.+++|+| ++..+++++.||.|++||+.++.....+...+...
T Consensus       107 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~  186 (814)
T 3mkq_A          107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG  186 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence            36789999999999999999864466777889999999999999 88899999999999999999887766665555588


Q ss_pred             eeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         80 VTHTVWSL--DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      +.+++|+|  ++.++++++.||.|++||+.+++.+..+..+...        +.+++|+|++.++++++ ++.+.+|+..
T Consensus       187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN--------VSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC--------EEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC--------EEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            99999999  9999999999999999999999888777665443        78999999999988766 5689999987


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ..+
T Consensus       259 ~~~  261 (814)
T 3mkq_A          259 TYK  261 (814)
T ss_dssp             TCS
T ss_pred             CCc
Confidence            543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.5e-20  Score=136.16  Aligned_cols=145  Identities=12%  Similarity=0.116  Sum_probs=121.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++++.|+.|++||  . ......+..|...+.++.|+| ++..+++++.|+.|++||.  +.....+...|...+
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i  187 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVV  187 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCE
T ss_pred             cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccE
Confidence            467899999999999999  2 566778889999999999988 8999999999999999993  344444434477899


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhhH
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      .+++|+|++. +++++.|+.|++||+.+++.+..+..+...        +.+++|+|++.+++.+.++.+.+|+....+.
T Consensus       188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          188 RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF--------VYCIKLLPNGDIVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC--------EEEEEECTTSCEEEEETTSEEEEECTTTCCE
T ss_pred             EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce--------EEEEEEecCCCEEEEecCCEEEEEECCCCce
Confidence            9999999998 889999999999999999888877665543        7899999999766666777999999876643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1e-20  Score=152.83  Aligned_cols=148  Identities=11%  Similarity=0.208  Sum_probs=121.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCC-CCceeecccCCCCeEEEEECCC--CCEEEEEeCCCcEEEEECCCCcc--cceeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL-NSPLNVHKDMTSAVTSVDYSPT--GREFVAGGYDKSLRLYLAHQGHS--RDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~   76 (197)
                      ++.++++|+.||.|++||+... ......+.+|.++|.+++|+|+  +..|++++.||.|++||+.++..  ... ...|
T Consensus        20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~-~~~h   98 (753)
T 3jro_A           20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV-HAVH   98 (753)
T ss_dssp             SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-ECCC
T ss_pred             CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-ccCC
Confidence            6889999999999999999731 3566778899999999999988  89999999999999999998762  222 3567


Q ss_pred             ccceeEEEEccC--CCEEEEEeCCCcEEEEEcCCCceee--eeccccccccccccccceecccCc-------------cc
Q psy18074         77 MQHVTHTVWSLD--NKFVISASDEMNLRVWKAHASEKLG--YVNNKQRQALDYSESLKQKYAHHP-------------QI  139 (197)
Q Consensus        77 ~~~v~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-------------~~  139 (197)
                      ...|.+++|+|+  ++++++++.||.|++||+.++....  .+..+        ...+.+++|+|             ++
T Consensus        99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~--------~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH--------AIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC--------SSCEEEEEECCCC---------CGGG
T ss_pred             CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC--------CCceEEEEecCcccccccccccCCCC
Confidence            889999999999  9999999999999999998764322  22222        33478999999             58


Q ss_pred             ceeeeec-CcceEEeecchh
Q psy18074        140 RRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus       140 ~~l~~~~-~~~~~i~~~~~~  158 (197)
                      ..++++. ++.+.+|+....
T Consensus       171 ~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          171 RKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             CCEEEEETTSCEEEEEEETT
T ss_pred             CEEEEEECCCeEEEEeccCC
Confidence            8888665 558999998765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=7e-21  Score=144.81  Aligned_cols=154  Identities=10%  Similarity=0.015  Sum_probs=115.1

Q ss_pred             CccEEE----EEcCCCcEEEEEccCC-----C--Cc---eeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCC
Q psy18074          2 EAFVFT----AANEDFNLYSYDIRQL-----N--SP---LNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~----~~~~d~~i~i~d~~~~-----~--~~---~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~   66 (197)
                      +|++|+    +|+.|+.|++||+...     .  .+   ...+.+|...|.+++|+|+ +..|++++.||.|++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            678888    7889999999998642     1  11   3556678899999999998 789999999999999999988


Q ss_pred             cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         67 HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      ...... .+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..+... -..+...+.+++|++++.++++..
T Consensus       183 ~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~-~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          183 VKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY-ESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC-CTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc-CCCCceeEEEEEEecCceEEEEEc
Confidence            554332 4577899999999999999999999999999998 5544444332210 001122478999999988886322


Q ss_pred             --Cc------ceEEeecchh
Q psy18074        147 --QV------PRHIYNAQAE  158 (197)
Q Consensus       147 --~~------~~~i~~~~~~  158 (197)
                        ++      .+.+|++.+.
T Consensus       260 ~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCCT
T ss_pred             cCCCccCCCCceEEEEeccC
Confidence              11      2678888643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=3.6e-20  Score=156.35  Aligned_cols=157  Identities=14%  Similarity=0.209  Sum_probs=130.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP--TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      .++.++++|+.|+.|++||+.+ +..+..+.+|...|.+++|+|  ++..+++++.|+.|++||+.++.....+ .+|..
T Consensus       667 ~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~  744 (1249)
T 3sfz_A          667 SDDSYIATCSADKKVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTN  744 (1249)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSS
T ss_pred             cCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-cCCCC
Confidence            3788999999999999999987 678888999999999999999  4568899999999999999999877665 56889


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-----cccccccccceecccCcccceeeeecCcceEEe
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-----QALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                      .|.+++|+|+++++++++.||.|++||+.+++....+.....     .........+.+++|+|+|+.++++.++.+.+|
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            999999999999999999999999999998877665543221     011111235789999999999999888899999


Q ss_pred             ecchhh
Q psy18074        154 NAQAEH  159 (197)
Q Consensus       154 ~~~~~~  159 (197)
                      +.....
T Consensus       825 d~~~~~  830 (1249)
T 3sfz_A          825 DIHTSG  830 (1249)
T ss_dssp             ETTTCC
T ss_pred             EecCCC
Confidence            986544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.85  E-value=6.7e-20  Score=133.13  Aligned_cols=146  Identities=16%  Similarity=0.239  Sum_probs=118.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECCCCCEE---EEEeCCCcEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSPTGREF---VAGGYDKSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l---~~~~~d~~v~i~d~~~~~~~~~~~~~   75 (197)
                      ++.++++++.|+.|++||+++..   ........+.+.|.++.++|++..+   ++++.++.|++||..........  .
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~  238 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--D  238 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--E
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--c
Confidence            67899999999999999997532   2334456678899999999976643   35678899999999987765554  4


Q ss_pred             cccceeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEE
Q psy18074         76 RMQHVTHTVWSLDNKFVISAS--DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHI  152 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i  152 (197)
                      +...+..++|+|++..+++++  .|+.|++||+.+++.+..+.+|...        |.+++|+|++++|++++. +.+.|
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~--------V~~l~~spdg~~l~S~s~D~~v~i  310 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR--------VLSLTMSPDGATVASAAADETLRL  310 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC--------EEEEEECTTSSCEEEEETTTEEEE
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC--------EEEEEEcCCCCEEEEEecCCeEEE
Confidence            457899999999999887654  7999999999999999888776654        789999999999997665 57899


Q ss_pred             eecch
Q psy18074        153 YNAQA  157 (197)
Q Consensus       153 ~~~~~  157 (197)
                      |++..
T Consensus       311 Wd~~~  315 (318)
T 4ggc_A          311 WRCFE  315 (318)
T ss_dssp             ECCSC
T ss_pred             EECCC
Confidence            99854

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=136.08  Aligned_cols=147  Identities=12%  Similarity=0.180  Sum_probs=120.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec-------------ccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH-------------KDMTSAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~   67 (197)
                      ++.+|++|+.||.|++||+... .....+             .+|...|.+++|+| ++..|++++.|+.|++||+.++.
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  133 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ  133 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred             CCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence            7899999999999999999863 333222             25899999999999 77899999999999999999988


Q ss_pred             ccceeecccccceeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccce-ee
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLD---NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRR-IA  143 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~  143 (197)
                      ....+.  +...+.+++|+|.   +.++++++.++.|++||+.+++.+..+..+...        |.+++|+|++.. ++
T Consensus       134 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~ll~  203 (408)
T 4a11_B          134 TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE--------ILAVSWSPRYDYILA  203 (408)
T ss_dssp             EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC--------EEEEEECSSCTTEEE
T ss_pred             cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc--------EEEEEECCCCCcEEE
Confidence            776653  4578999999985   459999999999999999998888777655543        789999999984 65


Q ss_pred             eec-CcceEEeecchhh
Q psy18074        144 RHR-QVPRHIYNAQAEH  159 (197)
Q Consensus       144 ~~~-~~~~~i~~~~~~~  159 (197)
                      ++. ++.+.+|++....
T Consensus       204 ~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          204 TASADSRVKLWDVRRAS  220 (408)
T ss_dssp             EEETTSCEEEEETTCSS
T ss_pred             EEcCCCcEEEEECCCCC
Confidence            554 5689999987543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=1.6e-20  Score=137.81  Aligned_cols=143  Identities=8%  Similarity=-0.031  Sum_probs=117.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEC-CCCcccceeecc--
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGR-EFVAGGYDKSLRLYLA-HQGHSRDIYHTK--   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~-~~~~~~~~~~~~--   75 (197)
                      ++.+|++|+.|+.|++||+....  .....+..|...|.+++|+|++. .|++++.||.|++||+ .++.....  ..  
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~   99 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNE   99 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCC
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEec--cccC
Confidence            67899999999999999998632  12455668999999999999999 9999999999999999 87765322  45  


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCC---------CceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA---------SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      |...|.+++|+| +.++++++.|+.|++||+.+         ++.+..+. +        ...+.+++|+|++ .++.+.
T Consensus       100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~-l~~~~~  168 (342)
T 1yfq_A          100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V--------KNKIFTMDTNSSR-LIVGMN  168 (342)
T ss_dssp             CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S--------CCCEEEEEECSSE-EEEEES
T ss_pred             CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e--------CCceEEEEecCCc-EEEEeC
Confidence            889999999999 99999999999999999986         55444443 2        2347899999998 555566


Q ss_pred             CcceEEeecch
Q psy18074        147 QVPRHIYNAQA  157 (197)
Q Consensus       147 ~~~~~i~~~~~  157 (197)
                      +..+.+|++..
T Consensus       169 d~~i~i~d~~~  179 (342)
T 1yfq_A          169 NSQVQWFRLPL  179 (342)
T ss_dssp             TTEEEEEESSC
T ss_pred             CCeEEEEECCc
Confidence            66899999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=4.2e-20  Score=145.24  Aligned_cols=150  Identities=7%  Similarity=0.075  Sum_probs=123.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCC-------CCceeecccCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCcccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQL-------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD----KSLRLYLAHQGHSRD   70 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~i~d~~~~~~~~   70 (197)
                      ++.+|++|+.|+.|++||+.+.       ......+..|...|.+++|+|++..|++++.+    +.|++||  .+....
T Consensus        77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~  154 (615)
T 1pgu_A           77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG  154 (615)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred             CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence            7899999999999999999631       25566778899999999999999999999887    6888888  444444


Q ss_pred             eeecccccceeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc-cceeeeec-C
Q psy18074         71 IYHTKRMQHVTHTVWSLDNK-FVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ-IRRIARHR-Q  147 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~  147 (197)
                      .+ .+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+..+...     ...+.+++|+|+ +++|+++. +
T Consensus       155 ~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          155 EV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-----GSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             EC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-----TCCEEEEEECSTTCCEEEEEETT
T ss_pred             ee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC-----CceEEEEEECCCCCCEEEEEeCC
Confidence            44 56889999999999998 7899999999999999999888877765540     013789999999 99998665 5


Q ss_pred             cceEEeecchhh
Q psy18074        148 VPRHIYNAQAEH  159 (197)
Q Consensus       148 ~~~~i~~~~~~~  159 (197)
                      +.+.+|++...+
T Consensus       229 g~i~vwd~~~~~  240 (615)
T 1pgu_A          229 RKISCFDGKSGE  240 (615)
T ss_dssp             CCEEEEETTTCC
T ss_pred             CeEEEEECCCCC
Confidence            689999986543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=4.6e-20  Score=140.17  Aligned_cols=143  Identities=15%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++|+.|+.|++||+++ +..+..+.+|...+.++.+  ++..+++|+.||.|++||++++..+..+ .+|...|.
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~  340 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVR  340 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCcCcEE
Confidence            578899999999999999987 5778888999999999999  5789999999999999999999877766 56788999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCc---------eeeeeccccccccccccccceecccCcccceeeeec-CcceE
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASE---------KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRH  151 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~  151 (197)
                      +++|  ++.++++|+.||.|++||+.++.         .+..+..+..        .|.+++|  ++.+|++++ ++.+.
T Consensus       341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~--~~~~l~s~s~Dg~i~  408 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--------RVFRLQF--DEFQIVSSSHDDTIL  408 (435)
T ss_dssp             EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--------CCCCEEE--CSSCEEECCSSSEEE
T ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--------CeEEEEe--CCCEEEEEeCCCEEE
Confidence            9998  78899999999999999997655         4445544443        4778888  677777666 56899


Q ss_pred             EeecchhhH
Q psy18074        152 IYNAQAEHR  160 (197)
Q Consensus       152 i~~~~~~~~  160 (197)
                      +|++.....
T Consensus       409 iwd~~~~~~  417 (435)
T 1p22_A          409 IWDFLNDPA  417 (435)
T ss_dssp             EEC------
T ss_pred             EEECCCCCC
Confidence            999876544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=2.6e-19  Score=136.33  Aligned_cols=149  Identities=13%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--ccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--KRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~   79 (197)
                      ++.++++|+.|+.|++||+++ +..+..+.+|...+.++.+  ++..+++++.||.|++||+.++.....+..  .|...
T Consensus       288 ~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  364 (445)
T 2ovr_B          288 DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  364 (445)
T ss_dssp             CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence            578899999999999999987 5778888889999998887  467999999999999999998887766532  37788


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-c----eEEee
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-P----RHIYN  154 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~----~~i~~  154 (197)
                      |.+++|+  ++++++++.||.|++||+.+++.+..+.....   ..+...|.+++|+|++.++++++.+ .    +.+|+
T Consensus       365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          365 VTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT---GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc---CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            9999995  67999999999999999999988876632111   1123457899999999999977655 3    78888


Q ss_pred             cchh
Q psy18074        155 AQAE  158 (197)
Q Consensus       155 ~~~~  158 (197)
                      ....
T Consensus       440 f~~~  443 (445)
T 2ovr_B          440 FDVD  443 (445)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=1.7e-19  Score=137.01  Aligned_cols=142  Identities=12%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++|+.||.|++||+.+ +.....+.+|.+.|.+++|  ++..|++|+.||.|++||+.++.....+ ..|...|.
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~  217 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVL  217 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEE
Confidence            678999999999999999987 5778888999999999999  7889999999999999999999877666 56788999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKL---GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      +++|++  .++++++.||.|++||+.++...   ..+.++.        ..|.+++|  ++++++++. ++.+.+|+...
T Consensus       218 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          218 HLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--------AAVNVVDF--DDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             EEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--------SCEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred             EEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC--------CcEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence            999974  58999999999999999887655   3333333        33677777  677777655 55789999865


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      .+
T Consensus       286 ~~  287 (435)
T 1p22_A          286 CE  287 (435)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.84  E-value=7.2e-20  Score=134.32  Aligned_cols=154  Identities=11%  Similarity=-0.003  Sum_probs=119.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCC--------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-Cccc-cee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL--------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-GHSR-DIY   72 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-~~~~-~~~   72 (197)
                      +.++++++.|+.|++||++..        ..++..+. |...+.+++|+|++  +++++.++.|++||+++ +... ...
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~  188 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee
Confidence            578999999999999998741        23445554 88999999999987  99999999999999998 5532 223


Q ss_pred             ecccccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCC------ceeeeeccccccc-cccccccceecccCcccceeee
Q psy18074         73 HTKRMQHVTHTVWSL-DNKFVISASDEMNLRVWKAHAS------EKLGYVNNKQRQA-LDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      ...|...+.+++|+| +++++++++.||.|++|++...      +....+..+.... ...+...+.+++|+|++++|++
T Consensus       189 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence            355678899999999 9999999999999999999876      5555555543210 0011235789999999999987


Q ss_pred             ec-CcceEEeecchhh
Q psy18074        145 HR-QVPRHIYNAQAEH  159 (197)
Q Consensus       145 ~~-~~~~~i~~~~~~~  159 (197)
                      +. ++.+.+|+....+
T Consensus       269 ~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          269 AGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EETTSCEEEEETTTTE
T ss_pred             ecCCceEEEEcCccHh
Confidence            66 4588999987554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=2.1e-19  Score=136.78  Aligned_cols=141  Identities=17%  Similarity=0.210  Sum_probs=118.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +|.++++|+.||.|++||+.+ +.....+.+|.+.|.++.|+  +..+++++.||.|++||+.+++....+ .+|...|.
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~  203 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVR  203 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEE
T ss_pred             cCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEE
Confidence            578999999999999999987 57788899999999999996  679999999999999999999877665 56888999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      +++|+  +..+++++.||.|++||+.+++.+..+..+...        +.+++|  ++.+++++. ++.+.+|+....
T Consensus       204 ~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~--------v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          204 CMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--------VRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--------EEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             EEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc--------EEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            99995  568999999999999999999888777665543        567777  666777555 558899987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=3e-19  Score=135.15  Aligned_cols=144  Identities=14%  Similarity=0.190  Sum_probs=115.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeec--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVH--KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +++|++|. |++|++||..+ +.....+  .+|...|++++|+|+|.+|++|+.||.|++||+.+++.+..+ .+|...+
T Consensus       116 ~n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v  192 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARV  192 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCE
T ss_pred             CCEEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCce
Confidence            45777775 89999999987 4555544  467788999999999999999999999999999999887766 6687888


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      .++++  ++.++++++.|+.+.+||...... +..+.++..        .+..+.++|++++++++. ++.+.+|+....
T Consensus       193 ~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--------~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          193 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEEee--CCCEEEEEeCCCceeEeeecccceeeEEeccccc--------ceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            88776  467999999999999999886443 344444443        367899999999999765 458899998654


Q ss_pred             h
Q psy18074        159 H  159 (197)
Q Consensus       159 ~  159 (197)
                      +
T Consensus       263 ~  263 (420)
T 4gga_A          263 E  263 (420)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=1.1e-18  Score=130.45  Aligned_cols=144  Identities=16%  Similarity=0.144  Sum_probs=115.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++++.|+.|++||+.+ ++....+..| ..+.+++|+|++..+ ++++.++.|++||+.+++....+..+  ..+.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~   77 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQ   77 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEE
T ss_pred             CEEEEEcCCCCEEEEEECCC-CeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCcc
Confidence            56889999999999999986 5666666655 558999999999977 56778999999999999887766333  4899


Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee-eeec-CcceEEeecchh
Q psy18074         82 HTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI-ARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~~~~~i~~~~~~  158 (197)
                      +++|+|++++++ +++.++.|++||+.+++.+..+..+..         +.+++|+|+++.+ +++. +..+.+|+....
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---------PLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---------EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---------cceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            999999999886 555679999999999888776654432         5789999999977 4554 558899998654


Q ss_pred             h
Q psy18074        159 H  159 (197)
Q Consensus       159 ~  159 (197)
                      +
T Consensus       149 ~  149 (391)
T 1l0q_A          149 A  149 (391)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.81  E-value=3.8e-18  Score=123.83  Aligned_cols=143  Identities=14%  Similarity=0.163  Sum_probs=113.0

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeec--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVH--KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++||+|. |++|++||+.+ ++.+..+  .+|...|.+++|+|++++|++|+.|+.|++|++.+++.+..+ .+|...+.
T Consensus        37 ~~lAvg~-D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~  113 (318)
T 4ggc_A           37 NVLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVG  113 (318)
T ss_dssp             SEEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEE
T ss_pred             CEEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEE
Confidence            4677764 89999999987 5655554  467788999999999999999999999999999999887766 56766666


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~  159 (197)
                      ++  ++++..+++++.++.+.+|+...... +..+.++..        .+..+.+++++++++++.. ..+.+|++...+
T Consensus       114 ~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          114 SL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             EE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--------CEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             Ee--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC--------ceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            54  55678999999999999999886543 334444443        3678899999999987664 588999987554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=8.3e-19  Score=127.68  Aligned_cols=151  Identities=9%  Similarity=0.039  Sum_probs=111.5

Q ss_pred             CccEEEEEc--CCCcEEEEEccCCCCceeecccCCCCeEEEEECC---CCCEEEEEeCCCcEEEEECCCCcccceeeccc
Q psy18074          2 EAFVFTAAN--EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP---TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~   76 (197)
                      +++++.+++  .|+.|++|++...++....+..|...+..++|+|   ++..|++++.|++|++||+.+|+++..+..+|
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            355566643  5999999999654677778888999999999999   77999999999999999999999888874332


Q ss_pred             --ccceeEEEEccCCCEE------------EEEeCCCcEEEEEcCCCceeeeec-----cccccccccccccceecccCc
Q psy18074         77 --MQHVTHTVWSLDNKFV------------ISASDEMNLRVWKAHASEKLGYVN-----NKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        77 --~~~v~~v~~~~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~  137 (197)
                        ...+.+++|+|+|.++            ++|+.|++|++||..+++.+..+.     ++..          ..+..+.
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~----------~~lsg~~  293 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG----------RFLEGDV  293 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC----------CEEEEEE
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc----------eeEcccc
Confidence              2467788999999886            567889999999999998776542     2211          1222333


Q ss_pred             ccceeeeec-CcceEEeecchhhHHH
Q psy18074        138 QIRRIARHR-QVPRHIYNAQAEHRAI  162 (197)
Q Consensus       138 ~~~~l~~~~-~~~~~i~~~~~~~~~~  162 (197)
                      ++.++++++ +..+.||++...+...
T Consensus       294 sg~~lASgS~DgTIkIWDl~tGk~l~  319 (356)
T 2w18_A          294 KDHCAAAILTSGTIAIWDLLLGQCTA  319 (356)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            466788765 5689999998765443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=1.1e-18  Score=132.02  Aligned_cols=146  Identities=9%  Similarity=0.015  Sum_probs=119.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-----ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-----VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~   76 (197)
                      ++.++++++.++.|++||+.+ ++...     .+.+|.+.+.+++|+|++..+++++.|+.|++||+.++.....+ ..|
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~  210 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLT  210 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECS
T ss_pred             CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCC
Confidence            567888898999999999986 44444     45678889999999999999999999999999999988876665 356


Q ss_pred             ccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec---------
Q psy18074         77 MQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR---------  146 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------  146 (197)
                      ...+.+++|+|++++++ +++.++.|++||+.+++.+..+..+..         +.+++|+|++++++++.         
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL---------PRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE---------EEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC---------ceEEEEcCCCCEEEEEECCCCccccC
Confidence            67899999999999885 555799999999999887776654332         57899999998887654         


Q ss_pred             CcceEEeecchh
Q psy18074        147 QVPRHIYNAQAE  158 (197)
Q Consensus       147 ~~~~~i~~~~~~  158 (197)
                      ++.+.+|+....
T Consensus       282 dg~i~~~d~~~~  293 (433)
T 3bws_A          282 GGRLGIYSMDKE  293 (433)
T ss_dssp             CEEEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence            457789998654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=2.8e-19  Score=136.02  Aligned_cols=146  Identities=10%  Similarity=0.055  Sum_probs=108.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC---------Ccee-----ecccCCCCeEEEEECCCCCEEE----EEeCCCcEEEEEC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN---------SPLN-----VHKDMTSAVTSVDYSPTGREFV----AGGYDKSLRLYLA   63 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~---------~~~~-----~~~~~~~~v~~~~~sp~~~~l~----~~~~d~~v~i~d~   63 (197)
                      ++.++++++.++ +.+|+.....         ....     ....+...|.+++|+|++.+|+    +++.|+.|++||+
T Consensus        47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~  125 (434)
T 2oit_A           47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDV  125 (434)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEH
T ss_pred             CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEc
Confidence            456778888777 8888753110         0010     1113456799999999999999    7888999999998


Q ss_pred             CCC--------ccc--ceeecccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecccccccccccccccee
Q psy18074         64 HQG--------HSR--DIYHTKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQK  132 (197)
Q Consensus        64 ~~~--------~~~--~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  132 (197)
                      .++        +.+  .....+|...|.+++|+|+ +.+|++++.||.|++||++++.......++.        ..+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~--------~~v~~  197 (434)
T 2oit_A          126 RTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST--------VAVTS  197 (434)
T ss_dssp             HHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG--------GCEEE
T ss_pred             cccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC--------CceeE
Confidence            754        111  1123457889999999998 8899999999999999999886554443332        33789


Q ss_pred             cccCcccceeeeecC-cceEEeecc
Q psy18074        133 YAHHPQIRRIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus       133 ~~~s~~~~~l~~~~~-~~~~i~~~~  156 (197)
                      ++|+|+|++|+++.. +.+.+|+..
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC
Confidence            999999999997664 588999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.79  E-value=1.2e-17  Score=124.86  Aligned_cols=145  Identities=11%  Similarity=0.098  Sum_probs=114.3

Q ss_pred             CccEE-EEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVF-TAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++..+ ++++.|+.|++||+.+ ++....+..+ ..+.+++|+|++..++. ++.++.|++||+.+++....+.  +...
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~  117 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTAT-NNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKS  117 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSS
T ss_pred             CCCEEEEECCCCCeEEEEECCC-CeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCC
Confidence            56654 7788899999999986 5666666544 48999999999998865 4567999999999988766653  3367


Q ss_pred             eeEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee-eeec-CcceEEeecc
Q psy18074         80 VTHTVWSLDNKFV-ISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI-ARHR-QVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~~~~~i~~~~  156 (197)
                      +.+++|+|+++++ ++++.++.|++||+.+++.+..+..+..         +..++|+|+++++ +++. +..+.+|++.
T Consensus       118 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~  188 (391)
T 1l0q_A          118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---------PKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---------cceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            8999999999987 6888899999999999888777655433         4789999999877 4544 4578999986


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ..+
T Consensus       189 ~~~  191 (391)
T 1l0q_A          189 TNS  191 (391)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.77  E-value=2.8e-17  Score=124.32  Aligned_cols=133  Identities=15%  Similarity=0.139  Sum_probs=102.0

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC---cEEEEECCCCcccceeecccccceeEEEEccCC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK---SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN   89 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~   89 (197)
                      +.|++||+..  .....+..|...+.+++|+|+|+.|++++.++   .|++||+.+++....  ..|...+.+++|+|||
T Consensus       159 ~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l--~~~~~~~~~~~~spdg  234 (415)
T 2hqs_A          159 YELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDG  234 (415)
T ss_dssp             EEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTS
T ss_pred             ceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe--ecCCCcccCEEEcCCC
Confidence            6899999973  45677778899999999999999999998775   999999998876543  3456789999999999


Q ss_pred             CEEE-EEeCCCc--EEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--c--ceEEeecchh
Q psy18074         90 KFVI-SASDEMN--LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--V--PRHIYNAQAE  158 (197)
Q Consensus        90 ~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~--~~~i~~~~~~  158 (197)
                      ++|+ +++.++.  |++||+.+++. ..+..+..        .+.+++|+|||++|+..+.  .  .+.+|++...
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~--------~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS--------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS--------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC--------cccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            9888 6666554  99999988765 33433332        3678999999998886553  2  3455565443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.77  E-value=2.1e-17  Score=125.04  Aligned_cols=145  Identities=8%  Similarity=0.017  Sum_probs=116.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++++.|+.|++||+.. ......+..|...+.+++|+|++..+++ ++.++.|++||+.++.....+..  ...+
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~  256 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLP  256 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEE
T ss_pred             CCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCc
Confidence            578999999999999999986 5667777788899999999999998855 45799999999998887665532  3569


Q ss_pred             eEEEEccCCCEEEEEe--------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee-ee-ecCcce
Q psy18074         81 THTVWSLDNKFVISAS--------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI-AR-HRQVPR  150 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~~~~~~  150 (197)
                      .+++|+|+++++++++        .|+.|++||+.+++.+..+....         .+..++|+|+++.+ ++ ..+..+
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---------NKRHIVSGNTENKIYVSDMCCSKI  327 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---------CEEEEEECSSTTEEEEEETTTTEE
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---------CcceEEECCCCCEEEEEecCCCEE
Confidence            9999999999998877        58899999999887766542221         25789999999755 44 445688


Q ss_pred             EEeecchh
Q psy18074        151 HIYNAQAE  158 (197)
Q Consensus       151 ~i~~~~~~  158 (197)
                      .+|+....
T Consensus       328 ~v~d~~~~  335 (433)
T 3bws_A          328 EVYDLKEK  335 (433)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            99998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.75  E-value=1.3e-16  Score=120.73  Aligned_cols=146  Identities=11%  Similarity=0.046  Sum_probs=108.9

Q ss_pred             CCccEEEEEcCCC---cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCC--cEEEEECCCCcccceeec
Q psy18074          1 MEAFVFTAANEDF---NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDK--SLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         1 ~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~   74 (197)
                      .||..|+.++.++   .|++||+.+ ++. ..+..|.+.+.+++|+|+|+.|+ +++.++  .|++||+.++.....  .
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l--~  263 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--T  263 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--C
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--c
Confidence            3788899988775   899999986 343 45667888999999999999887 566555  499999998876333  4


Q ss_pred             ccccceeEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC----
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASD-EM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ----  147 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----  147 (197)
                      .|...+.+++|+|+|++|++++. ++  .|.+||+.+++.. .+..+.        ..+..++|+|+|++|+.+..    
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--------~~~~~~~~spdG~~l~~~~~~~g~  334 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--------SQNQDADVSSDGKFMVMVSSNGGQ  334 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--------SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--------CcccCeEECCCCCEEEEEECcCCc
Confidence            56678999999999999987775 44  6888898877643 222222        22578999999999986543    


Q ss_pred             cceEEeecchhh
Q psy18074        148 VPRHIYNAQAEH  159 (197)
Q Consensus       148 ~~~~i~~~~~~~  159 (197)
                      ..+.+|++...+
T Consensus       335 ~~i~~~d~~~~~  346 (415)
T 2hqs_A          335 QHIAKQDLATGG  346 (415)
T ss_dssp             EEEEEEETTTCC
T ss_pred             eEEEEEECCCCC
Confidence            367888876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=8.7e-16  Score=123.64  Aligned_cols=141  Identities=19%  Similarity=0.159  Sum_probs=102.2

Q ss_pred             CCccEEEEEcC-CC-----cEEEEEccCCCCceeecccCC------------------------CCeEEEEECCCCCEEE
Q psy18074          1 MEAFVFTAANE-DF-----NLYSYDIRQLNSPLNVHKDMT------------------------SAVTSVDYSPTGREFV   50 (197)
Q Consensus         1 ~~~~~l~~~~~-d~-----~i~i~d~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~~~~l~   50 (197)
                      .||..|++++. |+     .|++||+.+ +.....+..+.                        ..+.+++|||||+.|+
T Consensus        46 pdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~  124 (741)
T 2ecf_A           46 PDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL  124 (741)
T ss_dssp             TTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE
T ss_pred             cCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE
Confidence            47899999887 87     899999986 44444443322                        2378999999999999


Q ss_pred             EEeCCCcEEEEECCCC---cccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccc-
Q psy18074         51 AGGYDKSLRLYLAHQG---HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYS-  126 (197)
Q Consensus        51 ~~~~d~~v~i~d~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-  126 (197)
                      +++. +.|++||+.++   .....  ..+...+..++|+|||++|++++ ++.|++||+.+++................ 
T Consensus       125 ~~~~-~~i~~~d~~~~~~~~~~~l--~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~  200 (741)
T 2ecf_A          125 FPLG-GELYLYDLKQEGKAAVRQL--THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIA  200 (741)
T ss_dssp             EEET-TEEEEEESSSCSTTSCCBC--CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCC
T ss_pred             EEeC-CcEEEEECCCCCcceEEEc--ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecccc
Confidence            9886 99999999988   44333  34557899999999999999887 46899999998776544333222111100 


Q ss_pred             -------cccceecccCcccceeeeec
Q psy18074        127 -------ESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       127 -------~~~v~~~~~s~~~~~l~~~~  146 (197)
                             ...+..++|||||++|+...
T Consensus       201 ~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          201 EFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             CHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             ceeeeeccccccceEECCCCCEEEEEE
Confidence                   01146799999999998654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.68  E-value=2.4e-16  Score=126.52  Aligned_cols=142  Identities=8%  Similarity=0.029  Sum_probs=102.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC---CeEEEEECCCCCEEEEEeCC---------CcEEEEECCCCccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS---AVTSVDYSPTGREFVAGGYD---------KSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d---------~~v~i~d~~~~~~~   69 (197)
                      ||.++++ +.|+.|++||+.+ ++....+..|..   .+.+++|||||++|++++.+         +.+++||+.++...
T Consensus        27 dg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  104 (723)
T 1xfd_A           27 DTEFIYR-EQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (723)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             CCcEEEE-eCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence            6776665 6789999999987 455566655554   48999999999999998764         78889999988762


Q ss_pred             cee-ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccc-ccccc---------ccceecccCcc
Q psy18074         70 DIY-HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQA-LDYSE---------SLKQKYAHHPQ  138 (197)
Q Consensus        70 ~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~---------~~v~~~~~s~~  138 (197)
                      ... ...|...+..++|+|||++|++++. +.|++||+.+++.......+.... +....         ..+..++||||
T Consensus       105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD  183 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD  183 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred             eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence            221 1233345889999999999998876 789999999887765544332211 11111         12368999999


Q ss_pred             cceeeeec
Q psy18074        139 IRRIARHR  146 (197)
Q Consensus       139 ~~~l~~~~  146 (197)
                      |++|+...
T Consensus       184 g~~la~~~  191 (723)
T 1xfd_A          184 GTRLAYAA  191 (723)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.67  E-value=4.5e-15  Score=115.84  Aligned_cols=153  Identities=10%  Similarity=0.026  Sum_probs=116.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEEC--CCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA--HQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~--~~~~~~~~~~~~~~~~   79 (197)
                      ++.++++++.|+.|.+||..+ ++.+..+..+.. +..++|+|+|++|++++.|+.|.+||+  .++..+..+.  +...
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~  223 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIE  223 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSE
T ss_pred             CCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCC
Confidence            567899999999999999987 567777763333 889999999999999999999999999  7777766653  3367


Q ss_pred             eeEEEEcc----CCCEEEEEe-CCCcEEEEEcCCCceeeeecccccc--ccccc-cccceecccCcccceee-eec-Ccc
Q psy18074         80 VTHTVWSL----DNKFVISAS-DEMNLRVWKAHASEKLGYVNNKQRQ--ALDYS-ESLKQKYAHHPQIRRIA-RHR-QVP  149 (197)
Q Consensus        80 v~~v~~~~----~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~-~~~-~~~  149 (197)
                      +..++|+|    +|+++++++ .++.|.+||..+++.+..+......  ...++ ...+..+.++|++..++ +.. ++.
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~  303 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  303 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence            89999999    999999887 4899999999999988877543210  00111 22467889999765544 433 346


Q ss_pred             eEEeecchh
Q psy18074        150 RHIYNAQAE  158 (197)
Q Consensus       150 ~~i~~~~~~  158 (197)
                      +.+|+....
T Consensus       304 i~vvd~~~~  312 (543)
T 1nir_A          304 VLLVNYKDI  312 (543)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEecCC
Confidence            788887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.67  E-value=5.9e-15  Score=107.84  Aligned_cols=143  Identities=9%  Similarity=0.018  Sum_probs=106.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCcc-cceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHS-RDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~-~~~~~~~~~~~v   80 (197)
                      +.++++++.++.|.+||+.+ ++....+..+...+ .++|+|+++.+++++. ++.|++||+.++.. .... ..+....
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~   86 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSM   86 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCC
T ss_pred             CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCc
Confidence            45688889999999999987 45566665555666 9999999997766655 88999999998876 4443 3333444


Q ss_pred             eEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecC-cc-eEEee
Q psy18074         81 THTVWSLDNKFVISASDEM---NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQ-VP-RHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-~~-~~i~~  154 (197)
                      .+++|+|+|++++++..++   .|.+||+.+++.+..+.....         ...++|+|+|++++ ++.. .. +.+|+
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---------~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---------AVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---------EEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---------ccceEECCCCCEEEEEecCCCceEEEEE
Confidence            4499999999999555553   899999999887776654332         37899999998665 4333 56 88888


Q ss_pred             cch
Q psy18074        155 AQA  157 (197)
Q Consensus       155 ~~~  157 (197)
                      +..
T Consensus       158 ~~~  160 (331)
T 3u4y_A          158 IDA  160 (331)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=125.62  Aligned_cols=140  Identities=11%  Similarity=0.082  Sum_probs=98.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC---CeEEEEECCCCCEEEEEeC---------CCcEEEEECCCCccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS---AVTSVDYSPTGREFVAGGY---------DKSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~---------d~~v~i~d~~~~~~~   69 (197)
                      ||.+++++ .|+.|++||+.+ +.....+..+..   .+.+++|||||++|++++.         ++.|++||+.+++..
T Consensus        26 dg~~~~~~-~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~  103 (719)
T 1z68_A           26 GQEYLHQS-ADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV  103 (719)
T ss_dssp             SSEEEEEC-TTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             CCeEEEEc-CCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence            56555555 689999999986 454444443322   4889999999999998775         789999999988762


Q ss_pred             ceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc-ccccccccccc---------ceecccCccc
Q psy18074         70 DIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK-QRQALDYSESL---------KQKYAHHPQI  139 (197)
Q Consensus        70 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~---------v~~~~~s~~~  139 (197)
                      ......  ..+..++|||||+.|+++. ++.|++||+.+++........ ...++.++...         ...++|||||
T Consensus       104 ~~~~l~--~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG  180 (719)
T 1z68_A          104 RGNELP--RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG  180 (719)
T ss_dssp             CSSCCC--SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS
T ss_pred             cceecC--cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC
Confidence            111111  4688999999999999876 789999999888765433222 11112121111         2589999999


Q ss_pred             ceeeeec
Q psy18074        140 RRIARHR  146 (197)
Q Consensus       140 ~~l~~~~  146 (197)
                      ++|+.++
T Consensus       181 ~~la~~~  187 (719)
T 1z68_A          181 KFLAYAE  187 (719)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.67  E-value=1.9e-15  Score=110.56  Aligned_cols=145  Identities=16%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCC-CcEEEEECC--CCcccceeecccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-KSLRLYLAH--QGHSRDIYHTKRM   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~i~d~~--~~~~~~~~~~~~~   77 (197)
                      ..++++++.|+.|++||+...+  ..... ..+...+.+++|+|+++.|++++.+ +.|.+|++.  ++...........
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            4566666889999999996322  22222 3467788999999999998888876 899999997  5553322111222


Q ss_pred             cceeEEEEccCCCEEEEEe-CCCcEEEEEcCC---CceeeeeccccccccccccccceecccCcccceeeee--cCcceE
Q psy18074         78 QHVTHTVWSLDNKFVISAS-DEMNLRVWKAHA---SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH--RQVPRH  151 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~~  151 (197)
                      ..+..++|+|+++++++++ .++.|.+||+..   .+....+....         .+.+++|+|++++++.+  .+..+.
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---------GCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---------TBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---------CceEEEECCCCCEEEEecCCCCEEE
Confidence            4789999999999887665 488899999943   33333333222         25789999999877754  456889


Q ss_pred             Eeecch
Q psy18074        152 IYNAQA  157 (197)
Q Consensus       152 i~~~~~  157 (197)
                      +|++..
T Consensus       155 ~~d~~~  160 (343)
T 1ri6_A          155 LFTVSD  160 (343)
T ss_dssp             EEEECT
T ss_pred             EEEecC
Confidence            999865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=3.1e-15  Score=109.18  Aligned_cols=145  Identities=12%  Similarity=0.013  Sum_probs=110.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCC--CeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccc----
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS--AVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKR----   76 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~----   76 (197)
                      .++++++.++.|.+||+.+ ++....+.....  .+..++|+|++..++ +++.++.|.+||+.+++....+..++    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence            5788999999999999986 455555543221  578899999998765 55567899999999988766553332    


Q ss_pred             ccceeEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         77 MQHVTHTVWSLDNKFVISAS------------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      ...+..++|+|+|++++++.            .++.|.+||+.+++.+..+.....         +..++|+|+|++|+.
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~  151 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---------ITMLAWARDGSKLYG  151 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---------CCCEEECTTSSCEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---------cceeEECCCCCEEEE
Confidence            22677899999999988775            579999999998887766544322         468899999998887


Q ss_pred             ecCcceEEeecchhh
Q psy18074        145 HRQVPRHIYNAQAEH  159 (197)
Q Consensus       145 ~~~~~~~i~~~~~~~  159 (197)
                      + +..+.+|+....+
T Consensus       152 ~-~~~i~~~d~~~~~  165 (337)
T 1pby_B          152 L-GRDLHVMDPEAGT  165 (337)
T ss_dssp             E-SSSEEEEETTTTE
T ss_pred             e-CCeEEEEECCCCc
Confidence            6 5678999986543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=2.7e-15  Score=107.32  Aligned_cols=138  Identities=14%  Similarity=0.085  Sum_probs=101.0

Q ss_pred             CccEEE-EEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECC-CCcccceeeccccc
Q psy18074          2 EAFVFT-AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAH-QGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~-~~~~~~~~~~~~~~   78 (197)
                      |+..++ ++..++.+.+|+++........+..+...+.++.|+|++..+++++ .++.+.+|++. .+.....+ ..+..
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~  217 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAY  217 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSE
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCc
Confidence            566665 7778899999987543445566677788999999999999887665 58889999876 33333333 34556


Q ss_pred             ceeEEEEccCCCEEEEEeCC-----------CcEEEEEcCCCceeeeec--cccccccccccccceecccCcccceeeee
Q psy18074         79 HVTHTVWSLDNKFVISASDE-----------MNLRVWKAHASEKLGYVN--NKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      .+.+++|+|+|++|++++.+           +.|.+||+.+++......  .+.        ..+..++|+|++++|+.+
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ--------GTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST--------TTSCSCCBCTTSSEEEEE
T ss_pred             ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC--------cccccceECCCCCEEEEE
Confidence            78999999999999877655           569999998776533222  222        236789999999998866


Q ss_pred             cCc
Q psy18074        146 RQV  148 (197)
Q Consensus       146 ~~~  148 (197)
                      ...
T Consensus       290 ~~~  292 (297)
T 2ojh_A          290 RYF  292 (297)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.64  E-value=8.5e-15  Score=122.16  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=107.6

Q ss_pred             CccEEEEEcCCCcEE-EEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLY-SYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ||..++.++.++.+. +||+.. +. ...+..|...+..++|+|+|+.|++++.++.|++||+.++...... ..|...+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v  423 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRT-GK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMI  423 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTT-CC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCC
T ss_pred             CCCeEEEEECCCceEEEEECCC-CC-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCc
Confidence            456777777777888 889875 33 3444577788999999999999999999999999999998765554 3566788


Q ss_pred             eEEEEccCCCEEEEEeCC----------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cc
Q psy18074         81 THTVWSLDNKFVISASDE----------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VP  149 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  149 (197)
                      .+++|+|||++|++++.+          +.|++||+.+++ ...+..+...        +..++|+|||++|+..+. ..
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~--------~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH--------DYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB--------EEEEEECTTSCEEEEEESCCC
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc--------cCCceEcCCCCEEEEEecccC
Confidence            999999999999877654          489999999876 4444443322        467899999999886554 34


Q ss_pred             eEEee
Q psy18074        150 RHIYN  154 (197)
Q Consensus       150 ~~i~~  154 (197)
                      ..+|+
T Consensus       495 ~~~~~  499 (1045)
T 1k32_A          495 DPSPD  499 (1045)
T ss_dssp             CCEEC
T ss_pred             CcCcc
Confidence            44444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=2.3e-14  Score=105.33  Aligned_cols=147  Identities=7%  Similarity=0.026  Sum_probs=111.2

Q ss_pred             CccEEEEEc--CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec---cc
Q psy18074          2 EAFVFTAAN--EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT---KR   76 (197)
Q Consensus         2 ~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~   76 (197)
                      ++..+++++  .++.|.+||+.+ .+....+..+...+.+++|+|++..+++++.++.+.+||+.+++....+..   ++
T Consensus       151 dg~~l~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          151 ATNTVYISGIGKESVIWVVDGGN-IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             TTTEEEEEEESSSCEEEEEETTT-TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             CCCEEEEEecCCCceEEEEcCCC-CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC
Confidence            556555554  578899999986 455666654556688999999999999999999999999999887665533   23


Q ss_pred             ccceeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-ee-cCcceEEe
Q psy18074         77 MQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RH-RQVPRHIY  153 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~~~~i~  153 (197)
                      ...+..++|+|++++++.++ .++.|.+||+.+++.+..+.....          ..++|+|+|+++. +. .++.+.+|
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES----------LAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----------CCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC----------ceEEECCCCCEEEEEECCCCeEEEE
Confidence            45678899999999877655 458999999999888776654332          4688999998554 44 34578999


Q ss_pred             ecchhh
Q psy18074        154 NAQAEH  159 (197)
Q Consensus       154 ~~~~~~  159 (197)
                      +....+
T Consensus       300 d~~~~~  305 (353)
T 3vgz_A          300 DAKSYK  305 (353)
T ss_dssp             ETTTTE
T ss_pred             ECCCCe
Confidence            876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.7e-14  Score=102.11  Aligned_cols=146  Identities=12%  Similarity=0.171  Sum_probs=99.6

Q ss_pred             CccEEEEEc--CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECC--CCcccceeeccc
Q psy18074          2 EAFVFTAAN--EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAH--QGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~--~~~~~~~~~~~~   76 (197)
                      |+.+|++++  .++...+|.+.........+..+ ..+..++|+|++..|+ +++.++.+.+|++.  ++.....  ..+
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~  171 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--THG  171 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--CCS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--ccC
Confidence            678888887  33455555554222334444443 4588999999999887 67788988888853  3433222  345


Q ss_pred             ccceeEEEEccCCCEEEEEe-CCCcEEEEEcC-CCceeeeeccccccccccccccceecccCcccceeeeecC-------
Q psy18074         77 MQHVTHTVWSLDNKFVISAS-DEMNLRVWKAH-ASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-------  147 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------  147 (197)
                      ...+.+++|+|++++++.++ .++.+.+|++. .+.....+..+..        .+..++|+|+|++|+....       
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY--------GDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE--------EEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc--------ccCCeEECCCCCEEEEEEcCCCCCcc
Confidence            57899999999999888665 58899999886 4444444443332        3578999999998885543       


Q ss_pred             -----cceEEeecchh
Q psy18074        148 -----VPRHIYNAQAE  158 (197)
Q Consensus       148 -----~~~~i~~~~~~  158 (197)
                           ..+.+|++...
T Consensus       244 ~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             CSSEEEEEEEEETTSC
T ss_pred             cccCceEEEEEecCCC
Confidence                 24788887554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.62  E-value=1.1e-14  Score=106.77  Aligned_cols=149  Identities=9%  Similarity=-0.097  Sum_probs=105.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccc---
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKR---   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~---   76 (197)
                      ++.++++++.++.|++||+.+ ++....+..+. ..+..++|+|++..++ +...++.|++||+.+++....+...+   
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            567899999999999999986 45555554332 2578899999998665 45578999999999887765553322   


Q ss_pred             --ccceeEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         77 --MQHVTHTVWSLDNKFVISASDE------------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        77 --~~~v~~v~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                        ...+..++|+|+|+++++++.+            +.|.+||+.+++..........      ...+.+++|+|+|+.+
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~l~  162 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM------PRQVYLMRAADDGSLY  162 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC------CSSCCCEEECTTSCEE
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC------CCcccceeECCCCcEE
Confidence              2337889999999999988755            8999999987543322111100      0125788899999944


Q ss_pred             eeecCcceEEeecchhh
Q psy18074        143 ARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       143 ~~~~~~~~~i~~~~~~~  159 (197)
                      +. . ..+.+|+....+
T Consensus       163 ~~-~-~~i~~~d~~~~~  177 (349)
T 1jmx_B          163 VA-G-PDIYKMDVKTGK  177 (349)
T ss_dssp             EE-S-SSEEEECTTTCC
T ss_pred             Ec-c-CcEEEEeCCCCc
Confidence            43 2 348888876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=6.8e-15  Score=115.60  Aligned_cols=136  Identities=15%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCcccceeecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD----KSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .++++++.+ .+.+||+.+ +...... .+..  .++.|||||+.|++++.+    +.|++||+.++.....  ..|...
T Consensus       124 ~~~~s~~~~-~~~l~d~~~-g~~~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--~~~~~~  196 (582)
T 3o4h_A          124 VVFTGATED-RVALYALDG-GGLRELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--DSGEGS  196 (582)
T ss_dssp             EEEEEECSS-CEEEEEEET-TEEEEEE-EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE--CCSSCE
T ss_pred             EEEEecCCC-CceEEEccC-CcEEEee-cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe--ecCCCc
Confidence            345555544 556999986 3433333 3333  789999999999987766    7899999998876533  456678


Q ss_pred             eeEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccccccccccccccceecc--------cCcccceeeeec-Cc
Q psy18074         80 VTHTVWSLDNKFVISASDEM--NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYA--------HHPQIRRIARHR-QV  148 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~-~~  148 (197)
                      +..++|+|||++|+++..++  .|++||+.+++.. .+..+...        +..++        |+|||..++++. +.
T Consensus       197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD--------FSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH--------HHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC--------hhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            89999999999999888888  8999999988776 44443332        35566        999997766554 45


Q ss_pred             ceEEeec
Q psy18074        149 PRHIYNA  155 (197)
Q Consensus       149 ~~~i~~~  155 (197)
                      ...+|..
T Consensus       268 ~~~l~~~  274 (582)
T 3o4h_A          268 RSAVFID  274 (582)
T ss_dssp             EEEEEET
T ss_pred             cEEEEEE
Confidence            7889987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.61  E-value=8.5e-15  Score=117.54  Aligned_cols=153  Identities=8%  Similarity=-0.028  Sum_probs=105.5

Q ss_pred             CCccEEEEEcCC---------CcEEEEEccCCCCceeec---ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Q psy18074          1 MEAFVFTAANED---------FNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHS   68 (197)
Q Consensus         1 ~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~   68 (197)
                      .||++|++++.+         +.+++||+.+ +.. ..+   ..|...+..++|||||+.|++++. +.|++||+.++..
T Consensus        70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A           70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred             CCCCEEEEEecCccceeecceeeEEEEECCC-Cce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence            378888888764         6788999986 333 233   334445889999999999999885 7899999998876


Q ss_pred             cceeeccccc-----------------ceeEEEEccCCCEEEEEeCCC--------------------------------
Q psy18074         69 RDIYHTKRMQ-----------------HVTHTVWSLDNKFVISASDEM--------------------------------   99 (197)
Q Consensus        69 ~~~~~~~~~~-----------------~v~~v~~~~~~~~l~~~~~dg--------------------------------   99 (197)
                      ......++..                 .+.+++|+|||++|++++.++                                
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            5544222111                 237899999999999876442                                


Q ss_pred             --cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-----cceEEeecchh
Q psy18074        100 --NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-----VPRHIYNAQAE  158 (197)
Q Consensus       100 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----~~~~i~~~~~~  158 (197)
                        .|++||+.+++....+..+..  +..+...+..++|||||++++....     ..+.+|++...
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDD--PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCC--GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             eeEEEEEECCCCceeEEeeCCcc--CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence              789999988775444443210  1112234678999999998864321     24677876544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.61  E-value=7.2e-14  Score=109.06  Aligned_cols=149  Identities=11%  Similarity=0.126  Sum_probs=112.6

Q ss_pred             CCccEEEEEcCCCcEEEEEc--cCCCCceeecccCCCCeEEEEECC----CCCEEEEEeC-CCcEEEEECCCCcccceee
Q psy18074          1 MEAFVFTAANEDFNLYSYDI--RQLNSPLNVHKDMTSAVTSVDYSP----TGREFVAGGY-DKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~   73 (197)
                      .||+++++++.|+.|.+||+  .+ .+.+..+. +...+..++|+|    +|+++++++. ++.|.+||..+++++..+.
T Consensus       188 pdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~  265 (543)
T 1nir_A          188 ASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  265 (543)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec
Confidence            37899999999999999999  55 45666665 455679999999    9999998874 8999999999988776653


Q ss_pred             cc---------c-ccceeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceee--eeccccccccccccccceecccCcccc
Q psy18074         74 TK---------R-MQHVTHTVWSLDNKF-VISASDEMNLRVWKAHASEKLG--YVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        74 ~~---------~-~~~v~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      ..         | ...+..+.++|++.. +++...++.|.+||+.+.+.+.  .+..         ...+..+.|+|+|+
T Consensus       266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------~~~~~~~~~spdg~  336 (543)
T 1nir_A          266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---------APFLHDGGWDSSHR  336 (543)
T ss_dssp             CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---------CSSCCCEEECTTSC
T ss_pred             ccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---------CcCccCceECCCCC
Confidence            21         2 236889999998765 4577789999999998766543  2221         12257899999999


Q ss_pred             eee-eec-CcceEEeecchhhH
Q psy18074        141 RIA-RHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus       141 ~l~-~~~-~~~~~i~~~~~~~~  160 (197)
                      ++. ++. ++.+.+|+....+.
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEEEecCCCeEEEEECCCCeE
Confidence            765 433 45889999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.60  E-value=8.7e-14  Score=102.26  Aligned_cols=151  Identities=5%  Similarity=-0.041  Sum_probs=110.8

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCCceeecccCCC---------CeEEEEECCCCCEEEEEe--CCCcEEEEECCCCccc
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNSPLNVHKDMTS---------AVTSVDYSPTGREFVAGG--YDKSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~l~~~~--~d~~v~i~d~~~~~~~   69 (197)
                      +|. +++++..++.|.+||+.+ ++....+..+..         .+.++.|+|++..+++++  .++.|++||..+++..
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            555 566667789999999986 455555554332         268899999999887765  4788999999998876


Q ss_pred             ceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-C-
Q psy18074         70 DIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-Q-  147 (197)
Q Consensus        70 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-  147 (197)
                      ..+. .+...+.+++|+|+|+++++++.++.|.+||+.+++....+......    ....+..++|+|+++++.... . 
T Consensus       178 ~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          178 TAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDG----KEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             EEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSS----SCCCEEEEEEETTTTEEEEEESSS
T ss_pred             EEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCC----CCcccceEEECCCCCEEEEEeCCC
Confidence            6653 13345789999999999999999999999999998877665542110    011246789999998766433 3 


Q ss_pred             cceEEeecchh
Q psy18074        148 VPRHIYNAQAE  158 (197)
Q Consensus       148 ~~~~i~~~~~~  158 (197)
                      ..+.+|+....
T Consensus       253 ~~v~~~d~~~~  263 (353)
T 3vgz_A          253 AEVLVVDTRNG  263 (353)
T ss_dssp             SEEEEEETTTC
T ss_pred             CEEEEEECCCC
Confidence            57788887554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=1.4e-14  Score=116.85  Aligned_cols=139  Identities=9%  Similarity=0.016  Sum_probs=99.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCC-----eEEEEECCCCCEEEEEeCC---------CcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSA-----VTSVDYSPTGREFVAGGYD---------KSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~~~~~d---------~~v~i~d~~~~~   67 (197)
                      ||.+++++  |+.|++||+.+ +.....+..|...     ...+.|||||+.|+.++.+         +.+++||+.++.
T Consensus        27 dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~  103 (740)
T 4a5s_A           27 DHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (740)
T ss_dssp             SSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCcEEEEc--CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence            67888886  89999999987 4555555555432     2448899999999988765         667899999988


Q ss_pred             ccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec-cccccccccccc---------cceecccCc
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN-NKQRQALDYSES---------LKQKYAHHP  137 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~---------~v~~~~~s~  137 (197)
                      ....  ..+...+..++|||||+.|+.+. ++.|++|++.+++...... +.....+....+         ....+.|||
T Consensus       104 ~~~l--~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp  180 (740)
T 4a5s_A          104 LITE--ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (740)
T ss_dssp             ECCS--SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             EEEc--ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence            6543  34557899999999999999875 6899999998877554222 222212222221         123588999


Q ss_pred             ccceeeeec
Q psy18074        138 QIRRIARHR  146 (197)
Q Consensus       138 ~~~~l~~~~  146 (197)
                      ||++||...
T Consensus       181 Dg~~la~~~  189 (740)
T 4a5s_A          181 NGTFLAYAQ  189 (740)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999998643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.59  E-value=1.2e-13  Score=100.70  Aligned_cols=143  Identities=9%  Similarity=0.009  Sum_probs=104.2

Q ss_pred             CccEEEEEc------------CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Q psy18074          2 EAFVFTAAN------------EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~   69 (197)
                      ||..+++++            .++.|.+||+.+ ......+.. ...+.+++|+|++.+++++  ++.|++||+.++...
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B           92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             CCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence            677777775            578999999976 455555543 4567889999999988877  688999999876543


Q ss_pred             ceeecc-----------------------------------------------------------------cccceeEEE
Q psy18074         70 DIYHTK-----------------------------------------------------------------RMQHVTHTV   84 (197)
Q Consensus        70 ~~~~~~-----------------------------------------------------------------~~~~v~~v~   84 (197)
                      ..+...                                                                 +...+.+++
T Consensus       168 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  247 (337)
T 1pby_B          168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA  247 (337)
T ss_dssp             EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence            222110                                                                 112345689


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      |+|+|++++++  ++.|.+||+.+++.+..+.....         +.+++|+|+|++|+.+. +..+.+|++...+
T Consensus       248 ~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS---------YYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC---------CCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc---------eeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            99999999887  78999999998887766654322         47899999999777544 4578999986554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.59  E-value=1.2e-13  Score=100.89  Aligned_cols=151  Identities=13%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCCc-eeecccCCCCeEEEEECCCCCEEEEEeCCC---cEEEEECCCCcccceeeccc
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNSP-LNVHKDMTSAVTSVDYSPTGREFVAGGYDK---SLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~   76 (197)
                      ||. +++++..++.|++||+.+ +.. ...+..+..+..+++|+|++++++++..++   .|.+||+.+++....+..  
T Consensus        50 dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--  126 (331)
T 3u4y_A           50 DCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--  126 (331)
T ss_dssp             SSCEEEEEESTTCEEEEEECSS-SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--
T ss_pred             CCCEEEEEeCCCCeEEEEECCC-CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--
Confidence            566 445555588999999986 454 666666666665599999999998555443   899999999887666533  


Q ss_pred             ccceeEEEEccCCCEEE-EEeCCCc-EEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eec-CcceEE
Q psy18074         77 MQHVTHTVWSLDNKFVI-SASDEMN-LRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHR-QVPRHI  152 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~-~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~~~~~i  152 (197)
                      ...+.+++|+|+|++++ +...++. +.+|++.....+.... .  ..+ .....+..++|+|+|++++ ++. +..+.+
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~--~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q--EFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E--EEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C--ccc-cCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            25678999999998665 4456688 9999987544332111 0  000 1112257899999998654 443 457899


Q ss_pred             eecchhh
Q psy18074        153 YNAQAEH  159 (197)
Q Consensus       153 ~~~~~~~  159 (197)
                      |+....+
T Consensus       203 ~d~~~~~  209 (331)
T 3u4y_A          203 LETQNPE  209 (331)
T ss_dssp             EECSSTT
T ss_pred             EECCCCc
Confidence            9986544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.58  E-value=2.8e-14  Score=119.09  Aligned_cols=143  Identities=11%  Similarity=0.133  Sum_probs=112.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC-CeEEEEECCCCCEEEEEeCCCcEE-EEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS-AVTSVDYSPTGREFVAGGYDKSLR-LYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~v~-i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ||..++.++ ++.|++|+... +. ...+..|.. .+..+.|+ +|..|++++.+..++ +|++..+......  .|...
T Consensus       307 dG~~la~~~-~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~  380 (1045)
T 1k32_A          307 DGDLIAFVS-RGQAFIQDVSG-TY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGN  380 (1045)
T ss_dssp             GGGCEEEEE-TTEEEEECTTS-SB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCS
T ss_pred             CCCEEEEEE-cCEEEEEcCCC-Cc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec--CCccc
Confidence            677777776 78899999875 33 444666777 89999999 999999988888898 9999877654332  56678


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-----------c
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-----------V  148 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------~  148 (197)
                      +..++|+|||++|++++.++.|++||+.+++.......+..        .+..++|||||++|+.+..           .
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~--------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~  452 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA--------MITDFTISDNSRFIAYGFPLKHGETDGYVMQ  452 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--------CCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC--------CccceEECCCCCeEEEEecCccccccCCCCC
Confidence            99999999999999999999999999998887665544333        2578999999999985543           2


Q ss_pred             ceEEeecchh
Q psy18074        149 PRHIYNAQAE  158 (197)
Q Consensus       149 ~~~i~~~~~~  158 (197)
                      .+.+|++...
T Consensus       453 ~i~l~d~~~g  462 (1045)
T 1k32_A          453 AIHVYDMEGR  462 (1045)
T ss_dssp             EEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            6788987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.57  E-value=6.7e-14  Score=102.35  Aligned_cols=146  Identities=10%  Similarity=0.145  Sum_probs=100.0

Q ss_pred             CccEEEEEcCC-CcEEEEEccCC-CC--ceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCC---cccceee
Q psy18074          2 EAFVFTAANED-FNLYSYDIRQL-NS--PLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQG---HSRDIYH   73 (197)
Q Consensus         2 ~~~~l~~~~~d-~~i~i~d~~~~-~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~---~~~~~~~   73 (197)
                      ++.++++++.+ +.|.+|++... +.  .+..+.. ...+..++|+|+++.+++++. ++.|.+||+..+   ...... 
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-  125 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-  125 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-
Confidence            67777777665 89999999721 22  2333433 347889999999998876664 888999999533   233332 


Q ss_pred             cccccceeEEEEccCCCEEEEEe-CCCcEEEEEcCC-Cceeee----eccccccccccccccceecccCcccceee-ee-
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHA-SEKLGY----VNNKQRQALDYSESLKQKYAHHPQIRRIA-RH-  145 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~-  145 (197)
                       .....+.+++|+|+++++++++ .++.|.+||+.+ ++....    .....       ...+..++|+|++++++ ++ 
T Consensus       126 -~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          126 -EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-------GAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             -CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-------TCCEEEEEECTTSSEEEEEET
T ss_pred             -cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-------CCCcceEEECCCCCEEEEEeC
Confidence             2235688999999999888776 889999999987 543221    11111       12256899999999765 43 


Q ss_pred             cCcceEEeecch
Q psy18074        146 RQVPRHIYNAQA  157 (197)
Q Consensus       146 ~~~~~~i~~~~~  157 (197)
                      .+..+.+|+...
T Consensus       198 ~~~~i~~~~~~~  209 (343)
T 1ri6_A          198 LNSSVDVWELKD  209 (343)
T ss_dssp             TTTEEEEEESSC
T ss_pred             CCCEEEEEEecC
Confidence            345789999853

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.57  E-value=6e-14  Score=112.98  Aligned_cols=148  Identities=14%  Similarity=0.088  Sum_probs=106.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      .||+.|++++. +.|++||+.. +.  ....+..+...+..++|||||+.|++++ ++.|++||+.++........ +..
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~-~~~  193 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQ-EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD-GST  193 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSS-CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC-CCS
T ss_pred             CCCCEEEEEeC-CcEEEEECCC-CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC-Ccc
Confidence            37888888876 8999999986 31  3455667778899999999999999887 46899999998776544322 212


Q ss_pred             ----------------ceeEEEEccCCCEEEEEeCCC---------------------------------cEEEEEcCC-
Q psy18074         79 ----------------HVTHTVWSLDNKFVISASDEM---------------------------------NLRVWKAHA-  108 (197)
Q Consensus        79 ----------------~v~~v~~~~~~~~l~~~~~dg---------------------------------~i~vwd~~~-  108 (197)
                                      .+..++|+|||++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence                            147899999999999887654                                 788999987 


Q ss_pred             CceeeeeccccccccccccccceecccCcccceeeeec------CcceEEeecchhh
Q psy18074        109 SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR------QVPRHIYNAQAEH  159 (197)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~~i~~~~~~~  159 (197)
                      ++........      .+...+..++| |||++|+...      +..+.+|++...+
T Consensus       274 ~~~~~~~~~~------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          274 AQTQWIDLGK------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             CCCEEECCCS------CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             CceEEecCCC------CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence            7654433220      11233678999 9999998443      2356778775543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.57  E-value=3.1e-14  Score=114.10  Aligned_cols=137  Identities=12%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-----Ccccceeecccccc-------
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-----GHSRDIYHTKRMQH-------   79 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~-------   79 (197)
                      ++.|++||+.+ +. ...+..+...+.+++|||+|+.|+++ .++.|++|++.+     +........++ ..       
T Consensus       100 ~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~-~~~~~g~~~  175 (706)
T 2z3z_A          100 QGGLVGFDMLA-RK-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT-ETLVYGQAV  175 (706)
T ss_dssp             TTEEEEEETTT-TE-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB-TTEEESSCC
T ss_pred             CCEEEEEECCC-Cc-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC-CCeEcccch
Confidence            58999999975 33 34445567778899999999999985 679999999988     76554432222 22       


Q ss_pred             -------eeEEEEccCCCEEEEEe---------------------------------CCCcEEEEEcCCCceeeeecccc
Q psy18074         80 -------VTHTVWSLDNKFVISAS---------------------------------DEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        80 -------v~~v~~~~~~~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                             +.+++|+|||++|++++                                 .+..|.+||+.+++.........
T Consensus       176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  255 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP  255 (706)
T ss_dssp             GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred             hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence                   48899999999999886                                 44679999999877544332211


Q ss_pred             ccccccccccceecccCcccceeeeec-Cc-----ceEEeecchh
Q psy18074        120 RQALDYSESLKQKYAHHPQIRRIARHR-QV-----PRHIYNAQAE  158 (197)
Q Consensus       120 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-----~~~i~~~~~~  158 (197)
                            +...+..++|+|||++|+... +.     .+.+|+....
T Consensus       256 ------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          256 ------KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             ------TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             ------CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence                  122367899999999888643 22     5678887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=116.10  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=99.7

Q ss_pred             CCccEEEEEcC---------CCcEEEEEccCCCCce--eecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Q psy18074          1 MEAFVFTAANE---------DFNLYSYDIRQLNSPL--NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR   69 (197)
Q Consensus         1 ~~~~~l~~~~~---------d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~   69 (197)
                      .||++|+.++.         ++.|++||+.+ +...  ..+   ...+..++|||||+.|+++. ++.|++|++.++...
T Consensus        69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~  143 (719)
T 1z68_A           69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSN-GEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF  143 (719)
T ss_dssp             TTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             CCCCeEEEEecCceeEEeecceEEEEEECCC-Cccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE
Confidence            37888888766         68999999986 3331  222   35688999999999999886 789999999887765


Q ss_pred             ceeecccccce-----------------eEEEEccCCCEEEEEeCCC---------------------------------
Q psy18074         70 DIYHTKRMQHV-----------------THTVWSLDNKFVISASDEM---------------------------------   99 (197)
Q Consensus        70 ~~~~~~~~~~v-----------------~~v~~~~~~~~l~~~~~dg---------------------------------   99 (197)
                      .....++...+                 .+++|+|||++|++++.|.                                 
T Consensus       144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~  223 (719)
T 1z68_A          144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV  223 (719)
T ss_dssp             ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred             EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence            43323322222                 4899999999999876542                                 


Q ss_pred             -cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec--Cc---ceEEee
Q psy18074        100 -NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QV---PRHIYN  154 (197)
Q Consensus       100 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~---~~~i~~  154 (197)
                       .|++||+.+++....+.......+..+...+..++||||++++++..  ..   .+.+|+
T Consensus       224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence             78899998776420011001011222334478999999988776532  21   256777

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.56  E-value=7.1e-13  Score=98.08  Aligned_cols=146  Identities=11%  Similarity=0.109  Sum_probs=97.6

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCC------c------eeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCc
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNS------P------LNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~------~------~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~   67 (197)
                      ||+ +++++..++.|.+|++.....      .      ..........+..++|+|+|+++++++ .++.|.+|++.++.
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            676 445555688999999875332      1      111223345678999999999887776 68999999998775


Q ss_pred             ccce--e--ecccccceeEEEEccCCCEEEEEeC--CCcEEEEEcC--CCc--eeeeeccccccccccccccceecccCc
Q psy18074         68 SRDI--Y--HTKRMQHVTHTVWSLDNKFVISASD--EMNLRVWKAH--ASE--KLGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        68 ~~~~--~--~~~~~~~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      ....  .  ...+...+..++|+|+|++|+++..  ++.|.+|++.  ++.  .+..+.. .        ..+..++|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g--------~~~~~~~~sp  315 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G--------IHPRNFIITP  315 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S--------SCCCEEEECT
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C--------CCCceEEECC
Confidence            4222  1  1122345689999999999876655  4889999986  344  2222222 1        1257899999


Q ss_pred             ccceeeeec--CcceEEeecc
Q psy18074        138 QIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus       138 ~~~~l~~~~--~~~~~i~~~~  156 (197)
                      ||++|+.+.  ++.+.+|...
T Consensus       316 dg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          316 NGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEEE
Confidence            999887554  3467886553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=1.5e-13  Score=110.14  Aligned_cols=152  Identities=15%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             CCccEEEEEcCCCcEEEEEccCC----CCceeecccCCCC--------------eEEEEECCCCCEEEEEe---------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQL----NSPLNVHKDMTSA--------------VTSVDYSPTGREFVAGG---------   53 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~--------------v~~~~~sp~~~~l~~~~---------   53 (197)
                      .||+.|+.+ .++.|++||+...    +........+...              +.++.|||||+.|++++         
T Consensus       130 pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~  208 (706)
T 2z3z_A          130 PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPT  208 (706)
T ss_dssp             TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCE
T ss_pred             CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceE
Confidence            378888885 5789999999851    2333333333332              48899999999999887         


Q ss_pred             ------------------------CCCcEEEEECCCCcccceee-cccccceeEEEEccCCCEEEEEeCCC-----cEEE
Q psy18074         54 ------------------------YDKSLRLYLAHQGHSRDIYH-TKRMQHVTHTVWSLDNKFVISASDEM-----NLRV  103 (197)
Q Consensus        54 ------------------------~d~~v~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~v  103 (197)
                                              .+..|++||+.++....... ..|...+.+++|+|||++|++++.++     .|.+
T Consensus       209 ~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~  288 (706)
T 2z3z_A          209 PIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNA  288 (706)
T ss_dssp             EEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             EeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEE
Confidence                                    44689999999887544432 24556789999999999999876664     8999


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCc--ccceeeeecC-cceEEeecc
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP--QIRRIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~-~~~~i~~~~  156 (197)
                      ||+.+++....+........   ...+..++|+|  ||++++++.. +...||...
T Consensus       289 ~d~~~g~~~~~~~~~~~~~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          289 YDAETGRFVRTLFVETDKHY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             EETTTCCEEEEEEEEECSSC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             EECCCCceeeEEEEccCCCe---ECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            99998843333321111100   01235789999  9998886654 467888765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.52  E-value=6.6e-14  Score=110.01  Aligned_cols=136  Identities=12%  Similarity=0.110  Sum_probs=102.8

Q ss_pred             CccEEEEEcCC----CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCcccceeecc
Q psy18074          2 EAFVFTAANED----FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK--SLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         2 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~   75 (197)
                      ||+.+++++.+    ..|++||+.+ +. ...+..|.+.+..++|||||+.|+++..++  .|++||+.++... .+ ..
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~  235 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-EL  235 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CC
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cC
Confidence            78889977766    7799999875 33 446678888899999999999999888888  8999999988766 33 45


Q ss_pred             cccceeEEE--------EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC
Q psy18074         76 RMQHVTHTV--------WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus        76 ~~~~v~~v~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      |...+..++        |+|||.++++++.++.+++|++  ++......           ..+.+++|+ +++++++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~-----------~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQ-----------GNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCS-----------SEEEEEEEE-TTEEEEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCC-----------CceEEEEec-CCEEEEEEcC
Confidence            555566666        9999988889999999999999  55443111           125788999 8888875433


Q ss_pred             --cceEEeec
Q psy18074        148 --VPRHIYNA  155 (197)
Q Consensus       148 --~~~~i~~~  155 (197)
                        .+-.+|..
T Consensus       302 ~~~p~~l~~~  311 (582)
T 3o4h_A          302 LSTPPRIVSL  311 (582)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCCCeEEEE
Confidence              24445543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.51  E-value=2.2e-13  Score=109.93  Aligned_cols=154  Identities=12%  Similarity=0.098  Sum_probs=101.9

Q ss_pred             CCccEEEEEcCC---------CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          1 MEAFVFTAANED---------FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         1 ~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      .||+.++.++.+         +.+++||+.+ ++ ...+..+.+.+..++|||||+.|+.+. ++.|++|++.++.....
T Consensus        71 pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             TTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             CCCCEEEEEECCeeeEEEccceEEEEEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence            378888888765         5667999986 33 445667778899999999999999885 68999999988775543


Q ss_pred             eecccccce-----------------eEEEEccCCCEEEEEeCCC-----------------------------------
Q psy18074         72 YHTKRMQHV-----------------THTVWSLDNKFVISASDEM-----------------------------------   99 (197)
Q Consensus        72 ~~~~~~~~v-----------------~~v~~~~~~~~l~~~~~dg-----------------------------------   99 (197)
                      ...++...+                 ..+.|||||++|+..+.|.                                   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence            322322222                 3589999999999764321                                   


Q ss_pred             -cEEEEEcCC---Cce--eeeeccccccccccccccceecccCcccceeeee--cC---cceEEeecchhh
Q psy18074        100 -NLRVWKAHA---SEK--LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH--RQ---VPRHIYNAQAEH  159 (197)
Q Consensus       100 -~i~vwd~~~---~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~---~~~~i~~~~~~~  159 (197)
                       .|++||+.+   ++.  ...+...  ..+..+...+..++|+|||+.++..  ..   ..+.+|++...+
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAP--ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCC--HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEEEECCCCCCCCcceEEEecCC--ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence             477788776   531  1122211  0011123347889999999966632  11   246788876554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.51  E-value=2.9e-12  Score=94.82  Aligned_cols=150  Identities=11%  Similarity=0.089  Sum_probs=95.9

Q ss_pred             CccEEEEE-cCCCcEEEEEccCCCCce--eec---cc--------CCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCC
Q psy18074          2 EAFVFTAA-NEDFNLYSYDIRQLNSPL--NVH---KD--------MTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~-~~d~~i~i~d~~~~~~~~--~~~---~~--------~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~   66 (197)
                      ++.+++++ ..++.|.+|++...+...  ...   .+        +...+.+++|+|+|+++++++ .++.+.+|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            35545554 468899999997432211  111   11        122358899999999776655 5789999988754


Q ss_pred             cc------c------ceeecccccceeEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee--eeeccccccccccccccce
Q psy18074         67 HS------R------DIYHTKRMQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHASEKL--GYVNNKQRQALDYSESLKQ  131 (197)
Q Consensus        67 ~~------~------~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~  131 (197)
                      ..      +      ......+...+..++|+|+|+++++++ .++.|.+|++.++...  ..+.....     +.....
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~-----~~~~~~  262 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV-----NAQGSG  262 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS-----CCCCEE
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC-----CCCCcc
Confidence            31      1      112223345688999999999887666 6899999999876432  21211110     111246


Q ss_pred             ecccCcccceee-eecC--cceEEeecc
Q psy18074        132 KYAHHPQIRRIA-RHRQ--VPRHIYNAQ  156 (197)
Q Consensus       132 ~~~~s~~~~~l~-~~~~--~~~~i~~~~  156 (197)
                      .++|+|||++|+ +...  ..+.+|++.
T Consensus       263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          263 DIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             cEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            899999999885 4444  468999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=3.3e-12  Score=93.94  Aligned_cols=147  Identities=12%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCce--eecccC-CCCeEEEEECCCCCEEEE-EeCCCcEEEEECCC--Ccccce--ee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPL--NVHKDM-TSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQ--GHSRDI--YH   73 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~-~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~--~~~~~~--~~   73 (197)
                      ||++++++..++.|.+|++...+...  ..+... ...+..++|+|+|+++++ ...++.+.+|++..  +.....  ..
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  230 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK  230 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence            67777777788899999998323322  112222 236788999999996665 56788999999874  443211  11


Q ss_pred             ccc-----ccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCC---ceeeeeccccccccccccccceecccCcccceeee
Q psy18074         74 TKR-----MQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHAS---EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        74 ~~~-----~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      ...     ...+..++|+|+|++|+ +...++.|.+|++...   ..+..+..+.        ..+..++|+|||++|+.
T Consensus       231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--------~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--------DFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS--------SCCCEEEECTTSSEEEE
T ss_pred             ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--------CCcCeEEECCCCCEEEE
Confidence            110     13588999999999875 5667899999998732   2222222211        22578999999998775


Q ss_pred             ec-C-cceEEeecc
Q psy18074        145 HR-Q-VPRHIYNAQ  156 (197)
Q Consensus       145 ~~-~-~~~~i~~~~  156 (197)
                      +. + +.+.+|...
T Consensus       303 ~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          303 VNQNTDNATLYARD  316 (347)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EEcCCCcEEEEEEe
Confidence            43 3 477888553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.50  E-value=1.1e-12  Score=96.20  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=100.6

Q ss_pred             CccEEEEEcCC------------CcEEEEEccCCC--CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Q psy18074          2 EAFVFTAANED------------FNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d------------~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~   67 (197)
                      ||+++++++.+            +.|.+||+.+..  .....+. +...+.+++|+|+|. +++++  +.|++||+.+++
T Consensus       102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCC
T ss_pred             CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCc
Confidence            67788887754            899999997521  2222332 344688999999999 65554  349999998876


Q ss_pred             ccceeeccc-------------------------------------------------------------------ccce
Q psy18074         68 SRDIYHTKR-------------------------------------------------------------------MQHV   80 (197)
Q Consensus        68 ~~~~~~~~~-------------------------------------------------------------------~~~v   80 (197)
                      ....+..+.                                                                   ...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence            544332110                                                                   0134


Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         81 THTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        81 ~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                      ..++|+| ++++++++  ++.|.+||+.+++.+..+.....         +..++|+|+|++|+.+. +..+.+|+....
T Consensus       258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT---------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC---------CCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC---------ccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            5778889 99999887  88999999999887766653322         46899999998777544 457899998654


Q ss_pred             h
Q psy18074        159 H  159 (197)
Q Consensus       159 ~  159 (197)
                      +
T Consensus       327 ~  327 (349)
T 1jmx_B          327 E  327 (349)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=2.6e-12  Score=94.51  Aligned_cols=154  Identities=12%  Similarity=0.046  Sum_probs=97.9

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCC--ceeeccc---------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCcc
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNS--PLNVHKD---------MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH-QGHS   68 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~-~~~~   68 (197)
                      ||.++++++ .++.|.+|++...+.  .+..+..         ....+.+++|+|+|+.+++...++.|++|++. ++..
T Consensus        96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence            677677666 788999999963222  2222211         11248899999999955666678899999998 4543


Q ss_pred             ccee--ecccccceeEEEEccCCCEEEE-EeCCCcEEEEEcCC--Ccee--eeeccccccccccccccceecccCcccce
Q psy18074         69 RDIY--HTKRMQHVTHTVWSLDNKFVIS-ASDEMNLRVWKAHA--SEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        69 ~~~~--~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~vwd~~~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      ....  .......+..++|+|+|+++++ ...++.|.+|++..  ++..  ..+......  ......+..++|+|||++
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD--YTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT--CCSCCEEEEEEECTTSCE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC--CCCCCcceeEEECCCCCE
Confidence            2221  1222246788999999997665 56788999999874  4321  111111100  000123578999999997


Q ss_pred             ee-eec-CcceEEeecch
Q psy18074        142 IA-RHR-QVPRHIYNAQA  157 (197)
Q Consensus       142 l~-~~~-~~~~~i~~~~~  157 (197)
                      |+ +.. +..+.+|++..
T Consensus       254 l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEEEETTTEEEEEEECG
T ss_pred             EEEEeCCCCEEEEEEECC
Confidence            74 443 45789999863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=5.2e-12  Score=93.79  Aligned_cols=145  Identities=3%  Similarity=-0.044  Sum_probs=94.6

Q ss_pred             CCCcEEEEEccCCCCceeecc----cCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECC-CCcccce--eec-cccccee
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHK----DMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAH-QGHSRDI--YHT-KRMQHVT   81 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~-~~~~~~~--~~~-~~~~~v~   81 (197)
                      .++.+.+|++...+.....+.    .+...+.+++|+|+|+++++++ .++.|++|++. +++....  ... .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            688999999974344333332    2456789999999999888765 46799999998 6764322  211 1345689


Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEEcC--CCceee---eeccccccccccccc------cceecc-cCcccceeeeec-C
Q psy18074         82 HTVWSLDNKFVISASD-EMNLRVWKAH--ASEKLG---YVNNKQRQALDYSES------LKQKYA-HHPQIRRIARHR-Q  147 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~---~~~~~~~~~~~~~~~------~v~~~~-~s~~~~~l~~~~-~  147 (197)
                      .++|+|+|+++++++. ++.|.+|++.  +++...   .+..... .+..+..      .+..++ |+|||++|+.+. .
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP-GIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT-TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC-CcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            9999999999887664 7899999865  454321   1111000 0000011      357899 999999886433 2


Q ss_pred             -c-----ceEEeecc
Q psy18074        148 -V-----PRHIYNAQ  156 (197)
Q Consensus       148 -~-----~~~i~~~~  156 (197)
                       +     .+.+|++.
T Consensus       276 ~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          276 NKFELQGYIAGFKLR  290 (365)
T ss_dssp             SSTTSCCEEEEEEEC
T ss_pred             CCCCCCCeEEEEEEC
Confidence             2     57899875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.48  E-value=4.2e-12  Score=91.01  Aligned_cols=146  Identities=8%  Similarity=0.072  Sum_probs=105.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc--cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-ccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK--DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-TKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~   78 (197)
                      +|+++++...++.|.+||..  +.....+.  .+...+.+++++|+|..+++...++.|++|+.. +..+..+. .++..
T Consensus       131 ~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~  207 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITN  207 (286)
T ss_dssp             TSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSC
T ss_pred             CCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccC
Confidence            67888888888899999975  34444443  344568999999999977777788999999975 44433331 22235


Q ss_pred             ceeEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASDEM-NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      .+..++++|+|+++++...++ .|.+||. +++.+..+..+...      ..+..++++|+|+++++..+..+.+|+...
T Consensus       208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~------~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH------AQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC------SCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC------CcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            789999999999888887776 9999996 45555555433211      124689999999988887667889997643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=4.3e-12  Score=100.99  Aligned_cols=154  Identities=14%  Similarity=0.070  Sum_probs=101.4

Q ss_pred             CCccEEEEEcCC----------CcEEEEEccCCC----Cceeecc-cCCCCeEEEEECCCCCEEEEEeCC--------Cc
Q psy18074          1 MEAFVFTAANED----------FNLYSYDIRQLN----SPLNVHK-DMTSAVTSVDYSPTGREFVAGGYD--------KS   57 (197)
Q Consensus         1 ~~~~~l~~~~~d----------~~i~i~d~~~~~----~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d--------~~   57 (197)
                      .||+.|+.++.+          ..|++||+....    .....+. .+...+..+.|||||+.|+.++.+        ..
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            378888887766          579999987510    3344555 556778889999999999877644        37


Q ss_pred             EEEEECC-CCc--ccceeecccccceeEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeccccccccccccc-cce
Q psy18074         58 LRLYLAH-QGH--SRDIYHTKRMQHVTHTVWSLDNKFVISASDEM--NLRVWKAHASEKLGYVNNKQRQALDYSES-LKQ  131 (197)
Q Consensus        58 v~i~d~~-~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~v~  131 (197)
                      |++||+. ++.  ....+...+...+..++|+|||++++++..++  .|.+||+.+++...... ........... .+.
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMR  297 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCC
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCc
Confidence            9999998 562  22233334457899999999999777887788  66677766665443322 22111000000 135


Q ss_pred             ecccCcccceeeeecCcceEEeec
Q psy18074        132 KYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus       132 ~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      .++|+|++++++++......||..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~  321 (662)
T 3azo_A          298 WFAPLANGLIAVVHGKGAAVLGIL  321 (662)
T ss_dssp             SEEECTTSCEEEEEBSSSCEEEEE
T ss_pred             eEeEeCCCEEEEEEEcCccEEEEE
Confidence            678888888887655455677744

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.3e-11  Score=92.04  Aligned_cols=130  Identities=12%  Similarity=0.026  Sum_probs=97.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      |+++|+++ .++.|++||++... .......|...+.++.+.+.  .+++++.||.|.+||+.++....     +...|+
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs  166 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVT  166 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCce
Confidence            56788888 78999999998643 44455677778888887654  38889999999999999877542     235899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCce--eeeeccccccccc---cccccceecccCcccceeee
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEK--LGYVNNKQRQALD---YSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~  144 (197)
                      +++|+|+|  ++.|..||.+++|+...++.  ...+....  .+.   .+...|.+++|.+++.++++
T Consensus       167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp--~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS--ELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCH--HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCc--ccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999999  67788999999999887664  44442211  111   12345889999999998884

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.39  E-value=1.8e-11  Score=91.16  Aligned_cols=135  Identities=10%  Similarity=-0.013  Sum_probs=94.3

Q ss_pred             CCccEEEEEcC-CCc--EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          1 MEAFVFTAANE-DFN--LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      .||..|+.++. ++.  |++||+.. +........+...+..+.|+|+|+.|++++.++.|++||+.+++..... ..+.
T Consensus        45 pDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~  122 (388)
T 3pe7_A           45 RDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPA  122 (388)
T ss_dssp             TTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCT
T ss_pred             CCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echh
Confidence            37887777776 664  88888875 4545555555555556789999999999999999999999998765544 2233


Q ss_pred             cceeEEE--EccCCCEEEEE----------------------eCCCcEEEEEcCCCceeeeeccccccccccccccceec
Q psy18074         78 QHVTHTV--WSLDNKFVISA----------------------SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKY  133 (197)
Q Consensus        78 ~~v~~v~--~~~~~~~l~~~----------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  133 (197)
                      ..+....  ++|++++++..                      ..+..|.+||+.+++...... ...        .+..+
T Consensus       123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~--------~~~~~  193 (388)
T 3pe7_A          123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQ--------WLGHP  193 (388)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESS--------CEEEE
T ss_pred             hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCc--------ccccc
Confidence            3343333  48999988742                      234679999999886543332 211        25788


Q ss_pred             ccCc-ccceeeeec
Q psy18074        134 AHHP-QIRRIARHR  146 (197)
Q Consensus       134 ~~s~-~~~~l~~~~  146 (197)
                      +|+| ||+.|+...
T Consensus       194 ~~sp~dg~~l~~~~  207 (388)
T 3pe7_A          194 IYRPYDDSTVAFCH  207 (388)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EECCCCCCEEEEEE
Confidence            9999 999988544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.39  E-value=7.8e-12  Score=99.54  Aligned_cols=146  Identities=10%  Similarity=-0.015  Sum_probs=94.0

Q ss_pred             CccE-EEEEc-CCCcEEEEEccCCC-Cceeeccc-----CCCCeEEEEECCCCCEEEEEeCC----------CcEEEEEC
Q psy18074          2 EAFV-FTAAN-EDFNLYSYDIRQLN-SPLNVHKD-----MTSAVTSVDYSPTGREFVAGGYD----------KSLRLYLA   63 (197)
Q Consensus         2 ~~~~-l~~~~-~d~~i~i~d~~~~~-~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d----------~~v~i~d~   63 (197)
                      ||.. |+.++ .+..|+++++...+ .....+..     |...+..++|+|||+.|++++.+          ..|++||+
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            5665 55443 35667777664001 22344444     56678999999999999988766          58999999


Q ss_pred             CC------CcccceeecccccceeEEEEccCCCEEEEEeCC--------CcEEEEEcC-CCc--eeeeeccccccccccc
Q psy18074         64 HQ------GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE--------MNLRVWKAH-ASE--KLGYVNNKQRQALDYS  126 (197)
Q Consensus        64 ~~------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~vwd~~-~~~--~~~~~~~~~~~~~~~~  126 (197)
                      .+      +... .+...+...+..++|+|||++|+.++.+        ..|.+||+. ++.  ....+....       
T Consensus       169 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------  240 (662)
T 3azo_A          169 DGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-------  240 (662)
T ss_dssp             TSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-------
T ss_pred             CCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-------
Confidence            87      4433 2220334678889999999999876644        479999998 561  222332221       


Q ss_pred             cccceecccCcccceeeeecC-cceEEeec
Q psy18074        127 ESLKQKYAHHPQIRRIARHRQ-VPRHIYNA  155 (197)
Q Consensus       127 ~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~  155 (197)
                      ...+..+.|+|||++++++.. +...||..
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRV  270 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEE
Confidence            122578999999996665543 33345544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.38  E-value=5.4e-11  Score=88.32  Aligned_cols=148  Identities=14%  Similarity=0.061  Sum_probs=96.9

Q ss_pred             CccEEEEEc-CCCcEEEEEcc-CCCCc--eeecc--cCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECC--CCcccc--
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIR-QLNSP--LNVHK--DMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAH--QGHSRD--   70 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~-~~~~~--~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~--~~~~~~--   70 (197)
                      ||++++++. .++.|++||+. + ++.  +..+.  .+...+..++|+|+|+++++++. ++.+.+|++.  ++....  
T Consensus       155 dG~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  233 (365)
T 1jof_A          155 TETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH  233 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEEECCC-CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence            677666654 46789999997 4 332  22232  23566899999999999887764 6889999765  454321  


Q ss_pred             -ee---ec---cccc------ceeEEE-EccCCCEEEEEeCC-C-----cEEEEEcC-CCceeee---eccccccccccc
Q psy18074         71 -IY---HT---KRMQ------HVTHTV-WSLDNKFVISASDE-M-----NLRVWKAH-ASEKLGY---VNNKQRQALDYS  126 (197)
Q Consensus        71 -~~---~~---~~~~------~v~~v~-~~~~~~~l~~~~~d-g-----~i~vwd~~-~~~~~~~---~~~~~~~~~~~~  126 (197)
                       ..   ..   +|..      .+..++ |+|||++|+++..+ +     .|.+|++. +++....   .....       
T Consensus       234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------  306 (365)
T 1jof_A          234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------  306 (365)
T ss_dssp             EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------
T ss_pred             ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------
Confidence             11   11   1111      588999 99999998766532 2     89999996 4553321   11111       


Q ss_pred             cccceecccCc---ccceeeeecC--cceEEeecchh
Q psy18074        127 ESLKQKYAHHP---QIRRIARHRQ--VPRHIYNAQAE  158 (197)
Q Consensus       127 ~~~v~~~~~s~---~~~~l~~~~~--~~~~i~~~~~~  158 (197)
                       ..+..++|+|   ||++|+.+..  +.+.+|+....
T Consensus       307 -~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          307 -SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             -CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence             1246789999   8999886543  57889987543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.35  E-value=9.2e-11  Score=83.96  Aligned_cols=148  Identities=6%  Similarity=-0.041  Sum_probs=106.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .+++|++++.++.|.+||..+ ++.+..+..+. ..+.++.++|+|+.++  +.++.|+.||. +++.+..+..+....+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            578999999999999999976 67777776655 4688999999999888  45778999999 7888777754333468


Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecc
Q psy18074         81 THTVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~  156 (197)
                      .++.+.|+|+++++.+. ++.+..+|. +|+.+..+.....  ..........+++.++|+++++... ..+..|+..
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            88999999999998877 778888886 6776665542211  0001112345567788888876654 355666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.30  E-value=3.9e-10  Score=82.37  Aligned_cols=145  Identities=10%  Similarity=0.023  Sum_probs=97.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCcccceee-ccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD----KSLRLYLAHQGHSRDIYH-TKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~-~~~   76 (197)
                      +|.+++++..++.|++||... +........+...+.+++++|+|..+++...+    +.|++||..++....... ..+
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  133 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  133 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCEEEEECCCCEEEEEeCCC-CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc
Confidence            678888888889999999875 34333333456789999999999887777666    689999998776542321 123


Q ss_pred             ccceeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-ee-cCc
Q psy18074         77 MQHVTHTVWSLDNKFVISASD------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RH-RQV  148 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~  148 (197)
                      ...+..++++|+|+++++...      .+.|..+|..+++... +....        ..+..++|+|+++.|. +. ...
T Consensus       134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~--------~~~~~i~~~~dg~~l~v~~~~~~  204 (333)
T 2dg1_A          134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNI--------SVANGIALSTDEKVLWVTETTAN  204 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEE--------SSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCC--------CcccceEECCCCCEEEEEeCCCC
Confidence            357899999999998876653      3556666665444322 21111        1246889999998554 33 245


Q ss_pred             ceEEeecc
Q psy18074        149 PRHIYNAQ  156 (197)
Q Consensus       149 ~~~i~~~~  156 (197)
                      .+.+|+..
T Consensus       205 ~i~~~d~~  212 (333)
T 2dg1_A          205 RLHRIALE  212 (333)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            67778764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.29  E-value=8.2e-11  Score=86.37  Aligned_cols=114  Identities=11%  Similarity=0.162  Sum_probs=81.5

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC---C--cEEEEECCCCcccceeecccccceeEEEEc
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD---K--SLRLYLAHQGHSRDIYHTKRMQHVTHTVWS   86 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~--~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~   86 (197)
                      ++.|++||+.. +.. ..+    ..+..+.|+|+|+.|+.++.+   +  .|++|++.+++....... + . +..++|+
T Consensus        42 ~~~l~~~d~~~-~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~ws  112 (347)
T 2gop_A           42 ENTIVIENLKN-NAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWN  112 (347)
T ss_dssp             EEEEEEEETTT-CCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEEC
T ss_pred             cceEEEEeCCC-Cce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeEC
Confidence            56788999875 332 333    567889999999999877643   2  488889888776554422 2 3 8999999


Q ss_pred             cCCCEEEEEeC---------------------------CCcEEEEEcCCCceeeeeccccccccccccccceecccCccc
Q psy18074         87 LDNKFVISASD---------------------------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        87 ~~~~~l~~~~~---------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  139 (197)
                      |+|+.|+.++.                           ...|++||+.+++.+..+.. . .        +..++|+|||
T Consensus       113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~--------~~~~~~spdg  182 (347)
T 2gop_A          113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R--------FSSGIWHRDK  182 (347)
T ss_dssp             TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T--------TCEEEEETTE
T ss_pred             CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C--------cccccCCCCe
Confidence            99999887653                           25699999988876344433 1 1        5788999999


Q ss_pred             ceeeee
Q psy18074        140 RRIARH  145 (197)
Q Consensus       140 ~~l~~~  145 (197)
                       +++++
T Consensus       183 -~~~~~  187 (347)
T 2gop_A          183 -IVVNV  187 (347)
T ss_dssp             -EEEEE
T ss_pred             -EEEEE
Confidence             66554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=8.6e-11  Score=86.07  Aligned_cols=148  Identities=7%  Similarity=0.006  Sum_probs=103.1

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCCceeeccc----------CCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCccc
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNSPLNVHKD----------MTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSR   69 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~   69 (197)
                      ++.++++.+ .++.|++||..  +..+..+..          +.....+++++|+ +..+++...++.|++|+..+++.+
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCeEEEEeCCCCCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            578888886 68999999954  454554422          1234889999998 667777778899999999988776


Q ss_pred             ceee-cccccceeEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccce
Q psy18074         70 DIYH-TKRMQHVTHTVWSLDNKFVIS-------ASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRR  141 (197)
Q Consensus        70 ~~~~-~~~~~~v~~v~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  141 (197)
                      ..+. ..+...+..++|+| +..+++       ...+..|++||+.+++.+..+.....     +...+..++++|+|..
T Consensus       232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-----~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          232 REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-----HFDMPHDIVASEDGTV  305 (329)
T ss_dssp             EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS-----CCSSEEEEEECTTSEE
T ss_pred             EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC-----ccCCeeEEEECCCCCE
Confidence            6552 23446788999999 333333       33455899999999988877642111     1123578999999977


Q ss_pred             eeeecC-cceEEeecch
Q psy18074        142 IARHRQ-VPRHIYNAQA  157 (197)
Q Consensus       142 l~~~~~-~~~~i~~~~~  157 (197)
                      +++... ..+.+|+...
T Consensus       306 yvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          306 YIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEESSSCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            776554 4778887643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.28  E-value=2.8e-10  Score=84.71  Aligned_cols=149  Identities=11%  Similarity=-0.030  Sum_probs=99.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEE--ECCCCCEEEEE----------------------eCCC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVD--YSPTGREFVAG----------------------GYDK   56 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~----------------------~~d~   56 (197)
                      .||..|+.++.++.|++||+.+ +.....+..+...+....  ++|++..++..                      ..+.
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence            3788899988888999999986 444444544455454343  48999988742                      2346


Q ss_pred             cEEEEECCCCcccceeecccccceeEEEEcc-CCCEEEEEeCC------CcEEEEEcCCCceeeeecccccccccccccc
Q psy18074         57 SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL-DNKFVISASDE------MNLRVWKAHASEKLGYVNNKQRQALDYSESL  129 (197)
Q Consensus        57 ~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  129 (197)
                      .|++||+.++......  .+...+..++|+| +|+.|+....+      ..|.++|+..+... .+......      ..
T Consensus       169 ~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~------~~  239 (388)
T 3pe7_A          169 RLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEG------ES  239 (388)
T ss_dssp             EEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTT------EE
T ss_pred             eEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCC------cc
Confidence            8999999988765443  3346789999999 99998876653      36888887655433 33222210      12


Q ss_pred             ceecccCcccceeeeecC--c--c--eEEeecchhh
Q psy18074        130 KQKYAHHPQIRRIARHRQ--V--P--RHIYNAQAEH  159 (197)
Q Consensus       130 v~~~~~s~~~~~l~~~~~--~--~--~~i~~~~~~~  159 (197)
                      +..++|+|||+.|+....  .  .  +.+|++...+
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            467889999998864221  1  2  7788876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.27  E-value=1.1e-10  Score=86.61  Aligned_cols=101  Identities=10%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCCcccceeecc-----
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQGHSRDIYHTK-----   75 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~~~~~~~~~~-----   75 (197)
                      .|+.|++||..+ ++.+..+..+..+  .++|+|+++++++++          .++.|.+||..+++....+...     
T Consensus        29 ~d~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           29 TESRVHVYDYTN-GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GGCEEEEEETTT-CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             ccCeEEEEECCC-CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            367999999876 4666666655444  899999999998876          2567999999988776655322     


Q ss_pred             cccceeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD--EMNLRVWKAHASEKLGY  114 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~  114 (197)
                      +...+..++|+|+|++|+++..  ++.|.+||+.+++.+..
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            1245678999999999987753  68899999999887766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.26  E-value=6.4e-10  Score=87.15  Aligned_cols=110  Identities=12%  Similarity=0.029  Sum_probs=86.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC--CCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--QGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~v   80 (197)
                      +.++++...++.|.++|..+ .+.+..+.. ...+..+.++|+|+++++++.++.|.+||+.  +++.+..+..+  ...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t-~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P  242 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGST-YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEA  242 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTT-CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEE
T ss_pred             ceEEEEeCCCCeEEEEECCC-CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCC
Confidence            45778888899999999987 466666643 3456799999999999999999999999996  66665555443  457


Q ss_pred             eEEEEc----cCCCEEEEEe-CCCcEEEEEcCCCceeeeec
Q psy18074         81 THTVWS----LDNKFVISAS-DEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        81 ~~v~~~----~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  116 (197)
                      ..++|+    |||++++++. .++.+.++|..+.+.+..+.
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            899999    6999988654 46899999998888776554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.26  E-value=6.7e-10  Score=81.34  Aligned_cols=150  Identities=11%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec---------ccCCCCeEEEEECC-CCCEEEEEe-CCCcEEEEECCCCcccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH---------KDMTSAVTSVDYSP-TGREFVAGG-YDKSLRLYLAHQGHSRD   70 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~sp-~~~~l~~~~-~d~~v~i~d~~~~~~~~   70 (197)
                      +|+++++...++.|++||.......+..+         ..+......++++| ++..+++.+ .++.|++|+ .++....
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            67889999889999999986321144444         23445689999999 788778776 689999999 4465554


Q ss_pred             eeec---------ccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCc---
Q psy18074         71 IYHT---------KRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP---  137 (197)
Q Consensus        71 ~~~~---------~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---  137 (197)
                      .+..         .+...+..++++|+ ++++++...++.|++||..+++.+..+.....      ...+..++|+|   
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~------~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF------GRNVFAISYIPGFL  253 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT------TTCEEEEEEETTEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc------CCCcceeeecCCEE
Confidence            4421         12234899999998 77777878889999999988887776643221      11245677777   


Q ss_pred             ---ccceeeeecC-cceEEeecchh
Q psy18074        138 ---QIRRIARHRQ-VPRHIYNAQAE  158 (197)
Q Consensus       138 ---~~~~l~~~~~-~~~~i~~~~~~  158 (197)
                         +|+..++... ..+.+|+....
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCC
Confidence               4443333222 25677775443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.26  E-value=6.2e-10  Score=79.61  Aligned_cols=144  Identities=9%  Similarity=0.098  Sum_probs=100.8

Q ss_pred             CccEEEEEcC-CCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-ccccc
Q psy18074          2 EAFVFTAANE-DFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-TKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~   78 (197)
                      ++.++++... ++.|.+||..  +..+..+. .+...+.+++++|+|..+++...++.|++|+.. +.....+. ..+..
T Consensus        88 ~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           88 SGDIIVTERSPTHQIQIYNQY--GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  164 (286)
T ss_dssp             TTEEEEEECGGGCEEEEECTT--SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             CCeEEEEcCCCCCEEEEECCC--CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence            4566666643 7889999954  44444443 334578999999999977777778999999965 44433332 13335


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc--ceEEeec
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV--PRHIYNA  155 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~~  155 (197)
                      .+..++++|+|+++++...++.|.+||.. ++.+..+.....      ...+..++++++|+++++....  .+.+|+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~------~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGI------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTT------SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCc------cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            68999999999988887888999999974 555544433210      1125789999999888776543  6788874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.23  E-value=7.1e-10  Score=79.80  Aligned_cols=142  Identities=9%  Similarity=0.006  Sum_probs=97.8

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec---ccc
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT---KRM   77 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~   77 (197)
                      +|+ +++++..++.|+.||...  . ...+..+...+.+++++|+|..+++...++.|.+||..++........   ...
T Consensus        38 ~g~~l~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  114 (296)
T 3e5z_A           38 ARSAVIFSDVRQNRTWAWSDDG--Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKL  114 (296)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTS--C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEEC
T ss_pred             CCCEEEEEeCCCCEEEEEECCC--C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCC
Confidence            465 788888899999999985  3 556666677899999999999887777778999999988775433211   112


Q ss_pred             cceeEEEEccCCCEEEE----Ee-------------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         78 QHVTHTVWSLDNKFVIS----AS-------------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      ..+..++++|+|+++++    ++             ..+.|..++.. ++. ..+....        .....++|+|+++
T Consensus       115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~--------~~~~gi~~s~dg~  184 (296)
T 3e5z_A          115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR--------VKPNGLAFLPSGN  184 (296)
T ss_dssp             CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC--------SSEEEEEECTTSC
T ss_pred             CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC--------CCCccEEECCCCC
Confidence            35678999999998887    32             12355555544 332 2222221        1247899999999


Q ss_pred             eeeeecC-cceEEeecc
Q psy18074        141 RIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus       141 ~l~~~~~-~~~~i~~~~  156 (197)
                      .+++... ..+.+|+..
T Consensus       185 ~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          185 LLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCeEEEEEEC
Confidence            8855443 467778764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.21  E-value=4.1e-10  Score=83.96  Aligned_cols=135  Identities=9%  Similarity=-0.013  Sum_probs=94.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC----------CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN----------SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~   71 (197)
                      ...++++|+.++ +.+|++....          ++... ..+.+ |+.++|  ++..|+++ .++.|++||+.+......
T Consensus        48 ~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~  121 (388)
T 1xip_A           48 SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRT  121 (388)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEE
T ss_pred             CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCc
Confidence            356778887774 6679875321          12122 24566 999999  89999988 789999999987553332


Q ss_pred             eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceE
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRH  151 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  151 (197)
                      . ..+...+.++.+.+.  .++.++.||.+.+||+.++.... .   .        ..|.+++|||+| ..+...++.+.
T Consensus       122 ~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---~--------~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          122 V-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---A--------QNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             E-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E---E--------ESEEEEEECSSE-EEEEETTSCEE
T ss_pred             c-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c---c--------CCceEEEEcCCc-eEEEEcCCcEE
Confidence            2 334456777777654  28888999999999998776543 1   1        137899999999 44555667888


Q ss_pred             Eeecchh
Q psy18074        152 IYNAQAE  158 (197)
Q Consensus       152 i~~~~~~  158 (197)
                      +|+....
T Consensus       186 ~~~~~~~  192 (388)
T 1xip_A          186 SFAWRNG  192 (388)
T ss_dssp             EEEEETT
T ss_pred             EEcCCCc
Confidence            9866543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.19  E-value=4.7e-10  Score=90.24  Aligned_cols=146  Identities=8%  Similarity=0.008  Sum_probs=93.6

Q ss_pred             CCccEEEEEcCCC-----cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCc----------------EE
Q psy18074          1 MEAFVFTAANEDF-----NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKS----------------LR   59 (197)
Q Consensus         1 ~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----------------v~   59 (197)
                      .||++|+.+..++     .|++||+.+ +........ ...+..++|+|||+.|+.++.++.                |+
T Consensus       134 PDg~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~  211 (710)
T 2xdw_A          134 EDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY  211 (710)
T ss_dssp             TTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred             CCCCEEEEEEcCCCCceEEEEEEECCC-CCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence            3778777654433     899999986 443332212 223678999999999998887765                99


Q ss_pred             EEECCCCcccc--eee-cccccceeEEEEccCCCEEEEEeC-----CCcEEEEEcCC------Cc-eeeeeccccccccc
Q psy18074         60 LYLAHQGHSRD--IYH-TKRMQHVTHTVWSLDNKFVISASD-----EMNLRVWKAHA------SE-KLGYVNNKQRQALD  124 (197)
Q Consensus        60 i~d~~~~~~~~--~~~-~~~~~~v~~v~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~~~~  124 (197)
                      +|++.++....  .+. ..+...+..++|+|||++|+..+.     +..|++||+.+      +. ....+..+...   
T Consensus       212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---  288 (710)
T 2xdw_A          212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG---  288 (710)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS---
T ss_pred             EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc---
Confidence            99998876432  221 123455789999999999886654     56899999976      43 23344433322   


Q ss_pred             cccccceecccCcccceeeeecC-c----ceEEeecch
Q psy18074        125 YSESLKQKYAHHPQIRRIARHRQ-V----PRHIYNAQA  157 (197)
Q Consensus       125 ~~~~~v~~~~~s~~~~~l~~~~~-~----~~~i~~~~~  157 (197)
                           +.. .|+|+|..|+.... .    .+.+|++..
T Consensus       289 -----~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~  320 (710)
T 2xdw_A          289 -----EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD  320 (710)
T ss_dssp             -----CEE-EEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             -----EEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence                 122 47888887763322 1    356666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.18  E-value=1.8e-09  Score=76.38  Aligned_cols=148  Identities=7%  Similarity=-0.037  Sum_probs=100.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +|+++++...++.|.+|+... .............+.+++++|+|..+++...++.|.+|+.......... ..+...+.
T Consensus       118 ~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~  195 (270)
T 1rwi_B          118 QGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPW  195 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTC-CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEE
T ss_pred             CCCEEEEECCCCEEEEEECCC-ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-ccCCCCce
Confidence            577788877788899997654 2222222222346788999999987777777889999998866543322 22225688


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .++++++|..+++...++.|.+||..............        ..+..++++++|+..++.. ++.+.+++....+
T Consensus       196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL--------NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC--------SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC--------CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            99999999877777778899999986543322111111        2257899999998666654 4477888776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.16  E-value=2.8e-09  Score=76.68  Aligned_cols=126  Identities=13%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC-CCcc---cceeecccccceeEEEEccC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH-QGHS---RDIYHTKRMQHVTHTVWSLD   88 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~-~~~~---~~~~~~~~~~~v~~v~~~~~   88 (197)
                      +.|+.++..  +. ...+..+......++|+|++..+++.+.++.|++|++. ++..   ...+ ..+...+..++++++
T Consensus       153 ~~l~~~~~~--g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          153 RWVFRLAPD--GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAG  228 (296)
T ss_dssp             CEEEEECTT--SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTT
T ss_pred             cEEEEECCC--CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCC
Confidence            345555543  23 34445556778999999999988777778999999987 4544   2233 334456778999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc-CcccceeeeecCcceEEee
Q psy18074         89 NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH-HPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus        89 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~~~i~~  154 (197)
                      |+++++.  ++.|.+||.. ++.+..+..+..         +.+++| +|+++.|..+....+.-++
T Consensus       229 G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---------~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          229 GLIWASA--GDGVHVLTPD-GDELGRVLTPQT---------TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             SCEEEEE--TTEEEEECTT-SCEEEEEECSSC---------CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             CCEEEEc--CCeEEEECCC-CCEEEEEECCCC---------ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            9977666  7889999986 666655543332         367888 6888877765555443333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.16  E-value=1e-09  Score=88.25  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=80.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCc---------
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDK-----SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMN---------  100 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~---------  100 (197)
                      ..+..+.|||||++|+.+..++     .|++||+.+++........  ..+..++|+|||+.|+.++.++.         
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            4588999999999998765433     8999999998876543222  23678999999999998877665         


Q ss_pred             -------EEEEEcCCCcee--eeeccccccccccccccceecccCcccceeeeec------CcceEEeecch
Q psy18074        101 -------LRVWKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR------QVPRHIYNAQA  157 (197)
Q Consensus       101 -------i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~~i~~~~~  157 (197)
                             |++|++.+++..  ..+.....      ...+..+.|||||++|+...      ...+.+|++..
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~------~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDE------PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTC------TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCC------CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence                   999999877632  12222111      11246789999999988543      23556777654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.16  E-value=1.9e-09  Score=78.90  Aligned_cols=144  Identities=4%  Similarity=-0.029  Sum_probs=100.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccceeeccc----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIYHTKR----   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~----   76 (197)
                      ++.++++...++.|.+||..+ .+.+..+. .......++++|++ .++.+. .++.|.+||..+++....+..+.    
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence            356777777789999999987 46666664 34678899999888 455544 88999999999988765553331    


Q ss_pred             ccceeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--------
Q psy18074         77 MQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--------  147 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------  147 (197)
                      ...+..+++ .+++.+++.. .++.|.++|+.+++.+..+.....         ...++++|+|+++++...        
T Consensus       130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~---------p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ---------PTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC---------BCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC---------ccceEEcCCCCEEEEECCCccCCccc
Confidence            015567777 4444444443 488999999999887776654322         367889999987776543        


Q ss_pred             ---cceEEeecchh
Q psy18074        148 ---VPRHIYNAQAE  158 (197)
Q Consensus       148 ---~~~~i~~~~~~  158 (197)
                         ..+.+++....
T Consensus       200 ~~~~~v~~id~~t~  213 (328)
T 3dsm_A          200 YEAPSLYRIDAETF  213 (328)
T ss_dssp             BCCCEEEEEETTTT
T ss_pred             cCCceEEEEECCCC
Confidence               35677776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.15  E-value=1e-09  Score=81.73  Aligned_cols=137  Identities=12%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CcEEEEEccCCCCceeecccCC--CCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcccceeecccccceeEEEE
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMT--SAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      ..|.+||+.. +. ...+..+.  ..+..+.|+|+|+.|+.++.+     +.|++||+.++.........   ... ++|
T Consensus       216 ~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~  289 (396)
T 3c5m_A          216 ARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLM  289 (396)
T ss_dssp             CCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEE
T ss_pred             ceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCc
Confidence            3688888864 23 33333332  357889999999988776543     34999999888654432111   233 889


Q ss_pred             cc-CCCEEEEEe----------------CCCcEEEEEcCCCceeeeeccccccc--cc-cccccceecccCcccceeeee
Q psy18074         86 SL-DNKFVISAS----------------DEMNLRVWKAHASEKLGYVNNKQRQA--LD-YSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        86 ~~-~~~~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +| +|+++++++                .+..|++||+.+++.. .+..+....  +. .....+..++|+|||+.|+..
T Consensus       290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence            99 999888654                3478999999877643 232222100  00 000013567899999988744


Q ss_pred             c--CcceEEeecc
Q psy18074        146 R--QVPRHIYNAQ  156 (197)
Q Consensus       146 ~--~~~~~i~~~~  156 (197)
                      +  .....||...
T Consensus       369 s~~~~~~~l~~~~  381 (396)
T 3c5m_A          369 SDFEGVPAIYIAD  381 (396)
T ss_dssp             ECTTSSCEEEEEE
T ss_pred             ecCCCCceEEEEE
Confidence            3  3355666553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.14  E-value=1.8e-09  Score=80.17  Aligned_cols=124  Identities=8%  Similarity=-0.009  Sum_probs=85.1

Q ss_pred             EEEEEcCCCcEEEEEccCCCCc-eeeccc------CC----CCeEEEEECCCCCEEEEEeC-----------CCcEEEEE
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSP-LNVHKD------MT----SAVTSVDYSPTGREFVAGGY-----------DKSLRLYL   62 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~~------~~----~~v~~~~~sp~~~~l~~~~~-----------d~~v~i~d   62 (197)
                      .++..+.++.|+++|+...... ...+..      ..    .....++++|++..++++..           ...|.+||
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence            4444556788999998642111 111100      00    11123689999888776543           34899999


Q ss_pred             CCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeeeeccccccccccccccceecccCcccc
Q psy18074         63 AHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS--EKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        63 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      +.+++.+..+..+  . +.+++|+|+|++|+++.. +.|.+||..++  +.+..+......        ...++++|+|.
T Consensus       293 ~~t~~~v~~i~~~--~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~--------P~~~~~~p~G~  360 (361)
T 2oiz_A          293 TKTKQRVARIPGR--D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA--------SLQVQFHPVGG  360 (361)
T ss_dssp             TTTTEEEEEEECT--T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSS--------EEEEEECCCSC
T ss_pred             CCCCcEEEEEecC--C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCC--------cEEEEecCCCC
Confidence            9999887776444  3 899999999999998876 99999999999  888776322221        36788999885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.14  E-value=5.4e-10  Score=89.70  Aligned_cols=106  Identities=8%  Similarity=-0.051  Sum_probs=73.8

Q ss_pred             CCCCeEEEEECCCCCEEEEE-----eCCCcEEEEECCCCccc-ceeecccccceeEEEEccCCCEEEEEeCCCc------
Q psy18074         33 MTSAVTSVDYSPTGREFVAG-----GYDKSLRLYLAHQGHSR-DIYHTKRMQHVTHTVWSLDNKFVISASDEMN------  100 (197)
Q Consensus        33 ~~~~v~~~~~sp~~~~l~~~-----~~d~~v~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~------  100 (197)
                      |...+.++.|||||++|+.+     +.+..|++||+.+++.+ ... ... .....++|+|||+.|+.++.+..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSC-CTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCc-ccccceEEecCCCEEEEEEecCCCCCccc
Confidence            44468999999999998843     34468999999998865 211 111 11268999999999998887765      


Q ss_pred             -------EEEEEcCCCcee--eeeccccccccccccccceecccCcccceeeeec
Q psy18074        101 -------LRVWKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       101 -------i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                             |++|++.+++..  ..+.....      ...+..+.|||||++|+...
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~------~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGD------PTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCC------TTCEEEEEECTTSCCEEEEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCC------CEEEEEEEECCCCCEEEEEE
Confidence                   999999887632  22222111      11256889999999988544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.10  E-value=2.8e-10  Score=84.73  Aligned_cols=132  Identities=11%  Similarity=-0.016  Sum_probs=85.2

Q ss_pred             CccEEEEEcC---CCcEEEEEccCCCCceeecccCCCC-eEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccc
Q psy18074          2 EAFVFTAANE---DFNLYSYDIRQLNSPLNVHKDMTSA-VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      ||..|+....   +..|++||+.. +.. ..+..+... ...+.|+|+|+.|+.++.++.|++||+.++....... .+.
T Consensus        46 dG~~l~~~~~~~g~~~l~~~d~~~-~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~  122 (396)
T 3c5m_A           46 DGKKLLFAGDFDGNRNYYLLNLET-QQA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-VDE  122 (396)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTT-TEE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCT
T ss_pred             CCCEEEEEEecCCCceEEEEECCC-CcE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-ccc
Confidence            6777666533   23688888875 333 333333333 3347899999999999989999999999887544432 121


Q ss_pred             cceeE-------------------EEEccCCCEEEEE-----eCCCcEEEEEcCCCceeeeeccccccccccccccceec
Q psy18074         78 QHVTH-------------------TVWSLDNKFVISA-----SDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKY  133 (197)
Q Consensus        78 ~~v~~-------------------v~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  133 (197)
                      .....                   ++|+|++++++..     ..+..|.+||+.+++...... ..        ..+..+
T Consensus       123 ~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~--------~~~~~~  193 (396)
T 3c5m_A          123 EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DT--------AWLGHP  193 (396)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ES--------SCEEEE
T ss_pred             ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CC--------cccccc
Confidence            22212                   3567888776644     356789999998877554332 11        125688


Q ss_pred             ccCc-ccceeeee
Q psy18074        134 AHHP-QIRRIARH  145 (197)
Q Consensus       134 ~~s~-~~~~l~~~  145 (197)
                      .|+| ++..|+..
T Consensus       194 ~~sp~dg~~l~~~  206 (396)
T 3c5m_A          194 IYRPFDDSTVGFC  206 (396)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             eECCCCCCEEEEE
Confidence            9999 88877643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.09  E-value=4.8e-09  Score=76.81  Aligned_cols=144  Identities=8%  Similarity=-0.028  Sum_probs=98.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-----CCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCcccceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-----SAVTSVDYSPTGREFVAGG--YDKSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~   74 (197)
                      ++.++++...++.|.+||+.+ .+....+....     .....+++  ++..++.++  .++.|.++|+.++.....+..
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            455666665789999999986 34444443222     14456777  455555554  488999999999887666533


Q ss_pred             ccccceeEEEEccCCCEEEEEeCC----------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDE----------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      +  ..+..++++|+|++++++..+          +.|.++|..+++....+.....       .....++++|+++++..
T Consensus       171 g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-------~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          171 G--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-------DWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             S--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-------CCCEEEEECTTSCEEEE
T ss_pred             C--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-------CCceeEEEecCCCEEEE
Confidence            3  456788999999977776554          7899999998887655543211       12478999999888875


Q ss_pred             ecCcceEEeecchh
Q psy18074        145 HRQVPRHIYNAQAE  158 (197)
Q Consensus       145 ~~~~~~~i~~~~~~  158 (197)
                      ... .+.+|+....
T Consensus       242 ~~~-~v~~~d~~t~  254 (328)
T 3dsm_A          242 INN-DIWRMPVEAD  254 (328)
T ss_dssp             ESS-SEEEEETTCS
T ss_pred             Ecc-EEEEEECCCC
Confidence            544 6777776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.07  E-value=2.7e-09  Score=85.69  Aligned_cols=107  Identities=11%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             CCccEEE-----EEcCCCcEEEEEccCCCCce-e-ecccCCCCeEEEEECCCCCEEEEEeCCCc-------------EEE
Q psy18074          1 MEAFVFT-----AANEDFNLYSYDIRQLNSPL-N-VHKDMTSAVTSVDYSPTGREFVAGGYDKS-------------LRL   60 (197)
Q Consensus         1 ~~~~~l~-----~~~~d~~i~i~d~~~~~~~~-~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-------------v~i   60 (197)
                      .||++||     .|+.+..|++||+.+ +... . .+..  .....++|+|||+.|+.++.+..             |++
T Consensus       130 PDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~  206 (695)
T 2bkl_A          130 WDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRY  206 (695)
T ss_dssp             TTSSEEEEEEEETTCSCCEEEEEETTT-CCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred             CCCCEEEEEECCCCCceEEEEEEECCC-CCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEE
Confidence            3778887     455567899999986 3332 1 1211  11267899999999999888765             999


Q ss_pred             EECCCCccc--cee-ecccccceeEEEEccCCCEEEEEeCCC----cEEEEEcCCCc
Q psy18074         61 YLAHQGHSR--DIY-HTKRMQHVTHTVWSLDNKFVISASDEM----NLRVWKAHASE  110 (197)
Q Consensus        61 ~d~~~~~~~--~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg----~i~vwd~~~~~  110 (197)
                      |++.++...  ..+ ...+...+..++|+|||++|+..+.++    .|.+|+..+++
T Consensus       207 ~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          207 HTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            999987642  222 122335788999999999998766555    67777665544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.07  E-value=2.6e-09  Score=77.99  Aligned_cols=128  Identities=4%  Similarity=0.018  Sum_probs=90.8

Q ss_pred             EEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEcc
Q psy18074          8 AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL   87 (197)
Q Consensus         8 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~   87 (197)
                      ..+.++.+..|.    ......+..+...+.+++|+|++..++++..++.|++||..++...... ..+...+.+++++|
T Consensus        22 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~   96 (333)
T 2dg1_A           22 PIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHK   96 (333)
T ss_dssp             CCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT
T ss_pred             EEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECC
Confidence            334566677772    3445556666677899999999997778888899999999887754433 23446799999999


Q ss_pred             CCCEEEEEeCC----CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074         88 DNKFVISASDE----MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        88 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      +|+++++...+    +.|.+||..++.....+....      ....+..++++|+|+++++..
T Consensus        97 dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A           97 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS------TAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS------SCCCEEEEEECTTSCEEEEEC
T ss_pred             CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc------cCCcccceEECCCCCEEEEec
Confidence            99988877666    689999988766442322111      112357889999998777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.06  E-value=1.6e-08  Score=71.52  Aligned_cols=143  Identities=8%  Similarity=-0.026  Sum_probs=96.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.++++.. ++.|..||...  .....+. .....+.+++++|+|..+++...++.|.+|+..+....... ......+
T Consensus        77 ~g~l~v~~~-~~~i~~~d~~~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p  152 (270)
T 1rwi_B           77 AGTVYVTDF-NNRVVTLAAGS--NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDP  152 (270)
T ss_dssp             TCCEEEEET-TTEEEEECTTC--SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSC
T ss_pred             CCCEEEEcC-CCEEEEEeCCC--ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCc
Confidence            567777766 78899999874  2233332 22357899999999987777777889999976554332211 2222467


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      ..++++|+|+.+++...++.|.+||..............        ..+..++++++|...++.. ...+.+|+..
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--------TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--------CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC--------CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            889999999977777778899999987655432221111        1257889999987666554 4467777764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.04  E-value=1.1e-08  Score=73.13  Aligned_cols=140  Identities=8%  Similarity=-0.044  Sum_probs=99.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCcccceeec-----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHSRDIYHT-----   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~-----   74 (197)
                      +|+++++  .++.|..||. + ++.+..+.... ..+.++.+.|+|..+++.+. ++.+..++. +|+.+..+..     
T Consensus        47 dG~ilvs--~~~~V~~~d~-~-G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~  121 (276)
T 3no2_A           47 AGEILFS--YSKGAKMITR-D-GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE  121 (276)
T ss_dssp             TSCEEEE--CBSEEEEECT-T-SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred             CCCEEEe--CCCCEEEECC-C-CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence            6788883  4677999998 4 56677776543 46888999999999998877 777887876 5665554421     


Q ss_pred             ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEe
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIY  153 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~  153 (197)
                      .+......+++.++|+++++...++.|..||.. |+.+..+.....         +......++|+.++++.+. .+..+
T Consensus       122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~---------~~~~~~~~~g~~~v~~~~~~~v~~~  191 (276)
T 3no2_A          122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT---------PFSSAFLDNGDCLVACGDAHCFVQL  191 (276)
T ss_dssp             SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC---------CCEEEECTTSCEEEECBTTSEEEEE
T ss_pred             cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC---------ccceeEcCCCCEEEEeCCCCeEEEE
Confidence            122345567789999999999999999999998 998888765422         2455667788777765544 34444


Q ss_pred             ecc
Q psy18074        154 NAQ  156 (197)
Q Consensus       154 ~~~  156 (197)
                      +..
T Consensus       192 d~~  194 (276)
T 3no2_A          192 NLE  194 (276)
T ss_dssp             CTT
T ss_pred             eCc
Confidence            443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.03  E-value=6.9e-09  Score=77.23  Aligned_cols=112  Identities=6%  Similarity=-0.106  Sum_probs=84.5

Q ss_pred             CccEEEEEcC-----CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCC
Q psy18074          2 EAFVFTAANE-----DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~   66 (197)
                      ++..+++...     ++.|.++|..+ .+.+..+.....+ . +.++|+|+++++++          .++.|.+||..++
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            4555666544     67899999987 4666666654455 4 99999999887765          3578999999998


Q ss_pred             cccceeeccc------ccceeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeec
Q psy18074         67 HSRDIYHTKR------MQHVTHTVWSLDNKFVISASD--EMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        67 ~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~  116 (197)
                      +....+..+.      ......++|+|||++++.+..  ++.|.++|+.+++.+.++.
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            8776653321      124677999999999887753  6889999999998887764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.03  E-value=6.5e-09  Score=76.18  Aligned_cols=127  Identities=9%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCccEEEEEcCC---C--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC--------------------
Q psy18074          1 MEAFVFTAANED---F--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD--------------------   55 (197)
Q Consensus         1 ~~~~~l~~~~~d---~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------------   55 (197)
                      .||..|+.++.+   +  .|++||+.. +...... .+.. +..+.|+|+|+.|+.++.+                    
T Consensus        68 pDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           68 PDGKKIAFMRANEEKKVSEIWVADLET-LSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             TTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred             CCCCEEEEEEeccCCCcceEEEEECCC-CceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence            367777766543   2  377788765 3433333 3334 9999999999998887632                    


Q ss_pred             -------CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeeeecccccc
Q psy18074         56 -------KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM-------NLRVWKAHASEKLGYVNNKQRQ  121 (197)
Q Consensus        56 -------~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~  121 (197)
                             ..|++||+.++.....+..  . .+..++|+|+| +++++..++       ...+|.+.+++. ..+..+ ..
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~  218 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS  218 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred             ccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence                   5799999998876333322  2 78899999999 777765442       334444444443 233222 11


Q ss_pred             ccccccccceecccCcccceeeeec
Q psy18074        122 ALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       122 ~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                              +..+  +|||++|+...
T Consensus       219 --------~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          219 --------FYAV--DSDGERILLYG  233 (347)
T ss_dssp             --------EEEE--EECSSCEEEEE
T ss_pred             --------eeeE--CCCCCEEEEEE
Confidence                    2233  89999887543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.01  E-value=7.7e-08  Score=68.74  Aligned_cols=143  Identities=3%  Similarity=-0.092  Sum_probs=98.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.++++...++.|..||..  +.... ........+.+++++++|..+++...++.|..||. ++.............+
T Consensus       109 ~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  185 (299)
T 2z2n_A          109 NGDIWFTEMNGNRIGRITDD--GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGP  185 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             CCCEEEEecCCceEEEECCC--CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc
Confidence            57788887778889999983  33222 22334467899999999987777767789999998 6655433222233568


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee-cCcceEEeec
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYNA  155 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~~  155 (197)
                      ..++++++|+.+++...++.|.+||. ++.... +....      ....+..++++++|+..++. ....+..|+.
T Consensus       186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPT------PNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS------TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             eeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCC------CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            89999999998777767889999998 665332 21110      11235789999999876665 3456777775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.96  E-value=1.4e-07  Score=67.34  Aligned_cols=143  Identities=2%  Similarity=-0.119  Sum_probs=95.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceee-cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNV-HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.++++...++.|..||. + +..... +......+.++++++++..+++...++.|..|+. ++.........+...+
T Consensus       151 ~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  227 (299)
T 2z2n_A          151 DNALWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARP  227 (299)
T ss_dssp             TSCEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             CCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCc
Confidence            5677887777788999998 4 333222 3334456889999999987776666888999999 6654332222234678


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      .+++++++|+.+++...++.|..||. ++. +..+.....      ...+.++++ ++|++.++...+.+..++..
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~------~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK------SAEPHGICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS------SCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             eeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC------CCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence            99999999997777667788999998 444 222211110      122578888 88887776555566666543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.94  E-value=1.5e-08  Score=82.02  Aligned_cols=114  Identities=8%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCc---------
Q psy18074         35 SAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMN---------  100 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~---------  100 (197)
                      ..+..+.|||||++|+.++.+     ..|++||+.+++.+...  .+...+..++|+|| +.|+.++.++.         
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            368899999999999876543     36999999998865432  11122367899999 99887766543         


Q ss_pred             -----EEEEEcCCCcee--eeeccccccccccccccceecccCcccceeeeecC------cceEEeecch
Q psy18074        101 -----LRVWKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ------VPRHIYNAQA  157 (197)
Q Consensus       101 -----i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~i~~~~~  157 (197)
                           |++|++.+++..  ..+.....      ...+..+.|||||++|+....      ..+.+|++..
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPEL------PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTC------TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCC------CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence                 889998776532  12221111      012468899999998884332      2456777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.90  E-value=2.4e-07  Score=69.03  Aligned_cols=111  Identities=6%  Similarity=-0.130  Sum_probs=79.4

Q ss_pred             CccEEEEEcC--CC---cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCC
Q psy18074          2 EAFVFTAANE--DF---NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~--d~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~   66 (197)
                      ++..+.+...  ..   .|.+||..+ .+.+..+.....+  .+.++|||++++.+.          .++.|.+||..+.
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            4555555543  33   789999987 4556666543344  999999999998875          3678999999987


Q ss_pred             cccceeecc------cccceeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeee-ec
Q psy18074         67 HSRDIYHTK------RMQHVTHTVWSLDNKFVISASD--EMNLRVWKAHASEKLGY-VN  116 (197)
Q Consensus        67 ~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~  116 (197)
                      +.......+      +......++|+|||++|+.+..  ++.|.++| .+++.+.. +.
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence            765554322      0124568999999999997764  57899999 98887766 54

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.86  E-value=9.7e-08  Score=68.86  Aligned_cols=144  Identities=9%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             CccEEEEEcCC---------------CcEEEEEccCCCCceeecccCCCCeEEEEEC----CCCCEEEEE-eCCCcEEEE
Q psy18074          2 EAFVFTAANED---------------FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYS----PTGREFVAG-GYDKSLRLY   61 (197)
Q Consensus         2 ~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~~d~~v~i~   61 (197)
                      +|+++++...+               +.|..||..  +... .+..+......++|+    |++..++.+ ..++.|.+|
T Consensus       127 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~  203 (314)
T 1pjx_A          127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence            56677766544               456666654  3322 222333456889999    999766554 567899999


Q ss_pred             ECC-CCcccc--ee--ecccc-cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         62 LAH-QGHSRD--IY--HTKRM-QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        62 d~~-~~~~~~--~~--~~~~~-~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      +.. ++....  .+  ...+. ..+..++++++|+++++...++.|.+||..+++.+..+..+.        ..+.++++
T Consensus       204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--------~~~~~i~~  275 (314)
T 1pjx_A          204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--------EKPSNLHF  275 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--------SCEEEEEE
T ss_pred             ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--------CCceeEEE
Confidence            986 443211  11  11222 457889999999988887778899999998776655443322        22578999


Q ss_pred             CcccceeeeecC--cceEEeecc
Q psy18074        136 HPQIRRIARHRQ--VPRHIYNAQ  156 (197)
Q Consensus       136 s~~~~~l~~~~~--~~~~i~~~~  156 (197)
                      +|+++.|..+..  ..+..|+..
T Consensus       276 ~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          276 KPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEeCCCCeEEEEeCC
Confidence            999985543332  366666654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.86  E-value=5.9e-07  Score=64.14  Aligned_cols=143  Identities=8%  Similarity=-0.054  Sum_probs=95.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +|.++++...++.|.+||..  +.... .+......+.++++++++..+++...++.|..||.. +.............+
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~  106 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGP  106 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred             CCCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCC
Confidence            57788887778889999976  22222 223334678999999999877776667889999988 554322212223578


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeec
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNA  155 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~  155 (197)
                      ..+++.++|+++++...++.|..+|.. ++.........       ...+..+++.++|+..++.. ...+..++.
T Consensus       107 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          107 YGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-------GSYPAFITLGSDNALWFTENQNNSIGRITN  174 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST-------TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             ccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC-------CCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence            999999999988887778889999987 55432211111       11256788888888665554 335556654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.85  E-value=5.6e-07  Score=67.05  Aligned_cols=68  Identities=13%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             CccEEEEEc----------CCCcEEEEEccCCCCceeecccC-------CCCeEEEEECCCCCEEEEEeC--CCcEEEEE
Q psy18074          2 EAFVFTAAN----------EDFNLYSYDIRQLNSPLNVHKDM-------TSAVTSVDYSPTGREFVAGGY--DKSLRLYL   62 (197)
Q Consensus         2 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~~~~~--d~~v~i~d   62 (197)
                      ||+.++++.          .++.|.+||..+ .+.+..+.-.       ......+.|+|+|++|++++.  +..|.++|
T Consensus        76 Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD  154 (373)
T 2mad_H           76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence            677777765          367899999976 3444443221       123458899999999998874  47899999


Q ss_pred             CCCCcccce
Q psy18074         63 AHQGHSRDI   71 (197)
Q Consensus        63 ~~~~~~~~~   71 (197)
                       .+++....
T Consensus       155 -~t~~~~~~  162 (373)
T 2mad_H          155 -QGGSSDDQ  162 (373)
T ss_pred             -CCCCEEeE
Confidence             87765443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.83  E-value=4.5e-08  Score=79.19  Aligned_cols=144  Identities=8%  Similarity=0.037  Sum_probs=87.1

Q ss_pred             CCccEEEEEcCC-----CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCc--------------EEEE
Q psy18074          1 MEAFVFTAANED-----FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKS--------------LRLY   61 (197)
Q Consensus         1 ~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------------v~i~   61 (197)
                      .||+.|+.+..+     ..|++||+.+ +..+.. ..+...+..++|+|| +.|+.++.++.              |++|
T Consensus       172 PDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~  248 (741)
T 1yr2_A          172 DDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH  248 (741)
T ss_dssp             TTSSEEEEEEEETTCSEEEEEEEETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred             CCCCEEEEEEcCCCCceEEEEEEECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence            377877766443     3599999986 343322 111122357899999 98888776554              8999


Q ss_pred             ECCCCcccc--eee-cccccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC--ceeeeeccccccccccccccce
Q psy18074         62 LAHQGHSRD--IYH-TKRMQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHAS--EKLGYVNNKQRQALDYSESLKQ  131 (197)
Q Consensus        62 d~~~~~~~~--~~~-~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~  131 (197)
                      ++.++....  .+. ..+...+..+.|+|||++|+..+.+     ..|++||+.++  +....+......        +.
T Consensus       249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--------~~  320 (741)
T 1yr2_A          249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA--------QW  320 (741)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS--------CE
T ss_pred             ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc--------eE
Confidence            998765322  221 1222358899999999998866543     37999999876  313334333221        12


Q ss_pred             ecccCcccceeeeecC-c----ceEEeecc
Q psy18074        132 KYAHHPQIRRIARHRQ-V----PRHIYNAQ  156 (197)
Q Consensus       132 ~~~~s~~~~~l~~~~~-~----~~~i~~~~  156 (197)
                      .. ++|+|..|+.... .    .+.+|++.
T Consensus       321 ~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          321 DF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            22 3477877764332 1    25555554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.82  E-value=8.6e-07  Score=63.28  Aligned_cols=141  Identities=4%  Similarity=-0.088  Sum_probs=91.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      +++++++...++.|..||..  +.... .+......+.+++++++|..+++....+.|..|+. ++.........+...+
T Consensus       156 ~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  232 (300)
T 2qc5_A          156 DNALWFTENQNNSIGRITNT--GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARP  232 (300)
T ss_dssp             TSSEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             CCCEEEEecCCCeEEEECCC--CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence            56777777667889999883  33222 22233456889999999987776666778999998 4544333222234668


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      .+++++++|+.+++...++.|..||. ++... .+.....      ...+.++++.++|++.++... .+..++
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~------~~~~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTE------NAEPHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCST------TCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             eEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCcc------CCccceeEeCCCCCEEEEccC-ceEEeC
Confidence            89999999997777666789999998 44432 2211100      122578888999987766553 444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.82  E-value=2.5e-07  Score=66.84  Aligned_cols=141  Identities=9%  Similarity=0.025  Sum_probs=92.4

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--cc-cc
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--TK-RM   77 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~-~~   77 (197)
                      +|+ +++++..++.|..|+..  +. ...+......+.+++++++|+.+++...++.|..|+.. +.......  .+ ..
T Consensus        55 ~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~  130 (305)
T 3dr2_A           55 AQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRL  130 (305)
T ss_dssp             GGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEEC
T ss_pred             CCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCcc
Confidence            455 77888888999999874  33 44455556778999999999977666666789999986 55332221  11 12


Q ss_pred             cceeEEEEccCCCEEEE----EeC-------------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         78 QHVTHTVWSLDNKFVIS----ASD-------------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      ..+..++++|+|+++++    |..             .+.|..||..+++.....  ...        ....++|+||++
T Consensus       131 ~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~--------~p~gl~~spdg~  200 (305)
T 3dr2_A          131 NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD--------HPNGLAFSPDEQ  200 (305)
T ss_dssp             SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES--------SEEEEEECTTSS
T ss_pred             CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC--------CCcceEEcCCCC
Confidence            35678999999998886    332             245777777666543322  111        146889999998


Q ss_pred             eeeeec-C------cceEEeecc
Q psy18074        141 RIARHR-Q------VPRHIYNAQ  156 (197)
Q Consensus       141 ~l~~~~-~------~~~~i~~~~  156 (197)
                      .|.... .      ..+.+|+..
T Consensus       201 ~lyv~~~~~~~~~~~~i~~~~~~  223 (305)
T 3dr2_A          201 TLYVSQTPEQGHGSVEITAFAWR  223 (305)
T ss_dssp             EEEEEECCC---CCCEEEEEEEE
T ss_pred             EEEEEecCCcCCCCCEEEEEEec
Confidence            666433 2      345666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.81  E-value=5.5e-07  Score=64.80  Aligned_cols=141  Identities=6%  Similarity=0.019  Sum_probs=87.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec---cccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT---KRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~   78 (197)
                      ++.++++...++.|+.||... +. ...+ .....+.+++++|+|.++++ . +..|.+||..++........   ....
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~-~~-~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~   98 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFT-KQ-VQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNN   98 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTT-CC-EEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSE
T ss_pred             CCEEEEEECCCCEEEEEECCC-Cc-EEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCC
Confidence            456788888889999999875 22 3333 33578999999999995544 4 56799999988765433211   1124


Q ss_pred             ceeEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ec-C
Q psy18074         79 HVTHTVWSLDNKFVISASDE---------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HR-Q  147 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~-~  147 (197)
                      .++.++++|+|+++++....         ..-.+|.+........+....        .....++|+||++.|.. .. .
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~--------~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV--------DISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE--------SBEEEEEECTTSCEEEEEEGGG
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc--------ccccceEEcCCCCEEEEecCCC
Confidence            57899999999977654221         223455444222222221111        12468999999986653 33 3


Q ss_pred             cceEEeec
Q psy18074        148 VPRHIYNA  155 (197)
Q Consensus       148 ~~~~i~~~  155 (197)
                      ..+..|+.
T Consensus       171 ~~i~~~~~  178 (297)
T 3g4e_A          171 YSVDAFDY  178 (297)
T ss_dssp             TEEEEEEE
T ss_pred             CcEEEEec
Confidence            45666664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.81  E-value=7.5e-08  Score=72.76  Aligned_cols=102  Identities=8%  Similarity=-0.106  Sum_probs=78.9

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCCcccceeecc------c
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQGHSRDIYHTK------R   76 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~~~~~~~~~~------~   76 (197)
                      +.|.++|+.+ .+.+..+..-..+  .+.++||++++++++          .++.|.++|..+++....+..+      .
T Consensus        99 ~~VsVID~~t-~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGST-GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCC-CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            6899999987 4666666654455  899999999888775          3678999999998876665332      0


Q ss_pred             ccceeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeecc
Q psy18074         77 MQHVTHTVWSLDNKFVISASD--EMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~  117 (197)
                      ......++|+|||++++.+..  ++.|.+.|+.+++.+..+..
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            134567899999999998764  57899999999988776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=6.2e-10  Score=82.91  Aligned_cols=141  Identities=13%  Similarity=0.051  Sum_probs=68.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++..+++++.|+.|+.||..+ ++....+..  +.+.+..+.+++..+++++.|+.|+.||..+|+.+..........+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            467788899999999999987 565555554  44545555567777888889999999999988875543111101111


Q ss_pred             -EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchh
Q psy18074         82 -HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAE  158 (197)
Q Consensus        82 -~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~  158 (197)
                       +..+. ++..+++++.++.++.||..+|+.+..+..+..            ..++|++..++.+. +..+..|+....
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------------~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------------DSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSS
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------------ccccccCCEEEEEecCCEEEEEECCCC
Confidence             11111 344667788899999999999998876654321            22344555555433 345666665543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.77  E-value=3.4e-07  Score=65.96  Aligned_cols=102  Identities=10%  Similarity=0.058  Sum_probs=73.4

Q ss_pred             CCCeEEEEECCCCCEEEE-EeCCCcEEEEEC--CCCccc--ceee--cccccceeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         34 TSAVTSVDYSPTGREFVA-GGYDKSLRLYLA--HQGHSR--DIYH--TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~--~~~~~~--~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      ......++|+|+++.++. .+.++.|..|++  .++...  ..+.  ..+...+..++++++|++.++....+.|..||.
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            445689999999987654 556788999987  455432  1121  122356789999999998888777888999999


Q ss_pred             CCCceeeeeccccccccccccccceecccC-cccceee
Q psy18074        107 HASEKLGYVNNKQRQALDYSESLKQKYAHH-PQIRRIA  143 (197)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~  143 (197)
                      .+++.+..+......        +++++|. |+++.|.
T Consensus       228 ~tG~~~~~i~~p~~~--------~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          228 VTGKRLQTVKLPVDK--------TTSCCFGGKNYSEMY  257 (297)
T ss_dssp             TTCCEEEEEECSSSB--------EEEEEEESGGGCEEE
T ss_pred             CCceEEEEEECCCCC--------ceEEEEeCCCCCEEE
Confidence            888877766544322        5789998 7877654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.75  E-value=4.8e-07  Score=68.27  Aligned_cols=148  Identities=7%  Similarity=0.035  Sum_probs=90.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCccccee---eccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK--SLRLYLAHQGHSRDIY---HTKR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~i~d~~~~~~~~~~---~~~~   76 (197)
                      +++++++...++.|+.||+.. +........ ..... ++|+|++..|+.+..++  .|++|+...+......   ....
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~  217 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTF  217 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTS
T ss_pred             CCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchh
Confidence            577888888888999999975 333333333 23334 99999999998888765  7888988765542222   0112


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccce-ecccCcc-cceeeeecC-cceEEe
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQ-KYAHHPQ-IRRIARHRQ-VPRHIY  153 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~-~~~l~~~~~-~~~~i~  153 (197)
                      ...+.+++++|++..|+.+..++.|+.||..++... .+.......  ....... .++|+|+ +.+.++... ..+..|
T Consensus       218 ~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g--~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~  294 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSG--SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI  294 (409)
T ss_dssp             CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCS--CCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccC--CCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            356788999995555555777889999999876532 221000000  0000112 8899995 555555443 345555


Q ss_pred             ec
Q psy18074        154 NA  155 (197)
Q Consensus       154 ~~  155 (197)
                      +.
T Consensus       295 ~~  296 (409)
T 3hrp_A          295 TP  296 (409)
T ss_dssp             CT
T ss_pred             ec
Confidence            43

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.75  E-value=9.2e-08  Score=75.01  Aligned_cols=104  Identities=6%  Similarity=-0.046  Sum_probs=79.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeecccccc
Q psy18074         44 PTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH--ASEKLGYVNNKQRQ  121 (197)
Q Consensus        44 p~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~  121 (197)
                      |.+..+++...++.|.++|..+++.+..+..+  ..+..+.|+|||+++++++.++.|.+||+.  +++.+..+..... 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-
Confidence            33445667778899999999999887776444  467799999999999999999999999996  7777666654333 


Q ss_pred             ccccccccceecccC----cccceeeeecC--cceEEeecchh
Q psy18074        122 ALDYSESLKQKYAHH----PQIRRIARHRQ--VPRHIYNAQAE  158 (197)
Q Consensus       122 ~~~~~~~~v~~~~~s----~~~~~l~~~~~--~~~~i~~~~~~  158 (197)
                              ...++|+    |||++++.+..  ..+.+++....
T Consensus       242 --------P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          242 --------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             --------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             --------CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence                    3688999    69998875443  46678876543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.72  E-value=1e-06  Score=64.34  Aligned_cols=138  Identities=8%  Similarity=-0.066  Sum_probs=87.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc---cccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK---RMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~   79 (197)
                      +.++++...++.|..||... +. ...+. ....+.++.|+|+|..+++. .+ .|++||..++.........   ....
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~-~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~  135 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLAS-GR-KTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR  135 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTT-TE-EEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCC-Cc-EEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCC
Confidence            56777887788999999875 22 33332 34679999999998877654 44 4999999887754332111   1245


Q ss_pred             eeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec--CcceE
Q psy18074         80 VTHTVWSLDNKFVISASD------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QVPRH  151 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~~~  151 (197)
                      +..++++|+|+++++...      .+.|..++  +++.. .+....        .....++|+|+++.+....  ...+.
T Consensus       136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~--------~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI--------SIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE--------SSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC--------cccCCeEEcCCCCEEEEEECCCCEEE
Confidence            889999999997765432      24555555  44432 221111        1246889999998665332  34567


Q ss_pred             Eeecc
Q psy18074        152 IYNAQ  156 (197)
Q Consensus       152 i~~~~  156 (197)
                      +|+..
T Consensus       205 ~~d~~  209 (326)
T 2ghs_A          205 RVPLD  209 (326)
T ss_dssp             EEEBC
T ss_pred             EEEcc
Confidence            77653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.67  E-value=8.9e-07  Score=63.95  Aligned_cols=123  Identities=7%  Similarity=0.033  Sum_probs=76.8

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCccc--ceeecccccceeEEE
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD------KSLRLYLAHQGHSR--DIYHTKRMQHVTHTV   84 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~i~d~~~~~~~--~~~~~~~~~~v~~v~   84 (197)
                      +.|+.||..+ +.... +. .......++|+|++..|+.+...      +.|+.|++..+...  ..+.......+..++
T Consensus       169 ~~v~~~d~~~-g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          169 HSVYRLPPDG-SPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             EEEEEECSSS-CCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             CeEEEEcCCC-CcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            4566777654 33222 22 34566889999999988776654      68999998754311  111111224456789


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      ++++|++.++. .+ .|.+|+. .++.+..+.....         +.+++|+++++.|..+....+
T Consensus       246 ~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~~---------~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          246 VDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPGT---------ASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             ECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSSC---------CCEEEECTTSCEEEEEETTEE
T ss_pred             ECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCCc---------eeEEEEeCCCCEEEEEcCCeE
Confidence            99999955543 44 4999998 4666655543332         478889998876665444433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.67  E-value=1.8e-09  Score=80.35  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCC-CeE-EEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTS-AVT-SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~-~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++.++++++.|+.|+.||..+ ++....+..+.. .+. +..+. .+..+++++.++.++.||..+|+.+..+...  . 
T Consensus        48 ~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~-  122 (369)
T 2hz6_A           48 EEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA--F-  122 (369)
T ss_dssp             --CCEEECTTTCCEEEC------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------
T ss_pred             CCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC--C-
Confidence            456778888999999999976 343333322211 010 00111 3456777888999999999999987765332  1 


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                        ...++|++..+++++.++.|+.||..+|+.+..+.
T Consensus       123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          123 --ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             --cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence              23456788889999999999999999998876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.66  E-value=1.1e-06  Score=63.35  Aligned_cols=141  Identities=11%  Similarity=0.138  Sum_probs=87.7

Q ss_pred             CccEEEE-------EcCCCcEEEEEccCCCCceeeccc-----CCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcc
Q psy18074          2 EAFVFTA-------ANEDFNLYSYDIRQLNSPLNVHKD-----MTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~   68 (197)
                      ++.++++       +..++.|..||..+ +.. ..+..     +...+.+++++++ +..+++. ....|.+||.. +..
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~  103 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKT-GKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTF  103 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTT-CCE-EEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCC-CcE-EEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCE
Confidence            5677777       56778899999765 332 22222     3467899999999 6645544 34479999988 665


Q ss_pred             cce-eec---ccccceeEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeecccccccccccccc
Q psy18074         69 RDI-YHT---KRMQHVTHTVWSLDNKFVISASDE---------------MNLRVWKAHASEKLGYVNNKQRQALDYSESL  129 (197)
Q Consensus        69 ~~~-~~~---~~~~~v~~v~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  129 (197)
                      ... ...   .....+.+++++++|+++++...+               +.|..||.. ++...... ..        ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~--------~~  173 (314)
T 1pjx_A          104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF--------QF  173 (314)
T ss_dssp             EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE--------SS
T ss_pred             EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC--------CC
Confidence            333 211   112458899999999988776544               567777765 44322211 11        11


Q ss_pred             ceecccC----cccceee-ee-cCcceEEeecc
Q psy18074        130 KQKYAHH----PQIRRIA-RH-RQVPRHIYNAQ  156 (197)
Q Consensus       130 v~~~~~s----~~~~~l~-~~-~~~~~~i~~~~  156 (197)
                      ...++++    |+++.+. +. ....+.+|+..
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            3678888    9986544 33 34567777754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=2.4e-06  Score=62.74  Aligned_cols=153  Identities=10%  Similarity=0.023  Sum_probs=93.5

Q ss_pred             CccEEEEEc--CCCcEEEEEccCCCCceeec-------ccCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEECCCCc
Q psy18074          2 EAFVFTAAN--EDFNLYSYDIRQLNSPLNVH-------KDMTSAVTSVDYSPTGREFVAGGY-----DKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~i~d~~~~~   67 (197)
                      +|+++++..  .++.+.+|.+.. +. +..+       ..+...+.++++++++..+++-..     ++.|.+||+.+++
T Consensus        27 ~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~  104 (343)
T 2qe8_A           27 DGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ  104 (343)
T ss_dssp             TSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE
T ss_pred             CCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe
Confidence            678888853  234244555432 32 2222       234467999999999876665433     5789999999888


Q ss_pred             ccceeec-----ccccceeEEEEccCCCEE-EEEe---CCCcEEEEEcCCCceeeeeccccc-----ccccc--------
Q psy18074         68 SRDIYHT-----KRMQHVTHTVWSLDNKFV-ISAS---DEMNLRVWKAHASEKLGYVNNKQR-----QALDY--------  125 (197)
Q Consensus        68 ~~~~~~~-----~~~~~v~~v~~~~~~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~--------  125 (197)
                      ....+..     .+...+..++++|++..+ ++..   .++.|.+||+.+++....+..+..     ..+..        
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~  184 (343)
T 2qe8_A          105 LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG  184 (343)
T ss_dssp             EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE
T ss_pred             EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec
Confidence            6554422     122456899999865554 4544   578899999988776554432110     00000        


Q ss_pred             --------ccccceecccCcccceeeeecCcceEEeecc
Q psy18074        126 --------SESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       126 --------~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                              ....+..++|+|+|+.|..+......+|...
T Consensus       185 ~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          185 QPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             CTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             cCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence                    0123578999999988876654444666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.56  E-value=1.1e-06  Score=65.38  Aligned_cols=125  Identities=12%  Similarity=0.079  Sum_probs=85.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-Cceeecc---------c-CCCCeEEEEECCCCCEEEEEeC----------CCcEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHK---------D-MTSAVTSVDYSPTGREFVAGGY----------DKSLRL   60 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~---------~-~~~~v~~~~~sp~~~~l~~~~~----------d~~v~i   60 (197)
                      +|.++++. .+|.|++.|+.... .....+.         + ..+....++++|++..++....          ...|.+
T Consensus       237 dG~~~~vs-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTEEEEEB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCcEEEEe-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            45555544 47899999986421 1111111         0 0123345777999988877643          247999


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCC-EEEE-EeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcc
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-FVIS-ASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQ  138 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  138 (197)
                      +|+.+++.+..+..+  ..+..++++||++ +|++ ...++.|.++|..+++.+.++......         ..+.+++|
T Consensus       316 iD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p---------~~l~~s~d  384 (386)
T 3sjl_D          316 LDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG---------PQVITTAD  384 (386)
T ss_dssp             EETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS---------CCEEEECC
T ss_pred             EECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC---------ceeEECCc
Confidence            999999988887665  4788999999997 6665 455899999999999998887655432         45556655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=2.7e-06  Score=62.55  Aligned_cols=136  Identities=8%  Similarity=0.020  Sum_probs=84.3

Q ss_pred             ccEEEEEc---CCCcEEEEEccCCCCceeecccC-----------------------------CCCeEEEEECCCCCEEE
Q psy18074          3 AFVFTAAN---EDFNLYSYDIRQLNSPLNVHKDM-----------------------------TSAVTSVDYSPTGREFV   50 (197)
Q Consensus         3 ~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~-----------------------------~~~v~~~~~sp~~~~l~   50 (197)
                      +.++++..   .++.|.+||+.+ +...+.+..|                             ...+..++|+|+++.|+
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             CEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence            45566655   678899999875 3333333221                             12368899999999888


Q ss_pred             EEeCCC-cEEEEECC---CCc-----cccee-ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         51 AGGYDK-SLRLYLAH---QGH-----SRDIY-HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        51 ~~~~d~-~v~i~d~~---~~~-----~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      .+..++ .++.++..   .+.     ....+ ..++......++++++|+++++...++.|.+||..+++........ .
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~  289 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-K  289 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-G
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-c
Confidence            877665 55555532   111     00111 1123345678999999999889888999999998556532222111 0


Q ss_pred             cccccccccceecccCcccceeeeec
Q psy18074        121 QALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       121 ~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                            ...+..++|.++++++++..
T Consensus       290 ------~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          290 ------LSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             ------GSCEEEEEECTTSCEEEEEC
T ss_pred             ------eecCCeeEECCCCcEEEEeC
Confidence                  12257889988887666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.54  E-value=9.6e-06  Score=59.17  Aligned_cols=129  Identities=11%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             CccEEEEEcC------CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECC--CC-ccc--
Q psy18074          2 EAFVFTAANE------DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAH--QG-HSR--   69 (197)
Q Consensus         2 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~--~~-~~~--   69 (197)
                      +|.++++...      .+.|+.++  + +.. ..+.........++|+|+++.++.+ +.++.|++|++.  ++ ...  
T Consensus       144 ~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~  219 (326)
T 2ghs_A          144 SGALWIGTMGRKAETGAGSIYHVA--K-GKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA  219 (326)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE--T-TEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred             CCCEEEEeCCCcCCCCceEEEEEe--C-CcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc
Confidence            4666655432      23455555  2 332 2222233456789999999877554 457899999986  55 321  


Q ss_pred             ceee--cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccC-cccceee
Q psy18074         70 DIYH--TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH-PQIRRIA  143 (197)
Q Consensus        70 ~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~  143 (197)
                      ..+.  ......+..++++++|+++++...++.|.+||. +++.+..+.....        .+.+++|+ +++..|.
T Consensus       220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~--------~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--------QTTCPAFIGPDASRLL  287 (326)
T ss_dssp             EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--------BEEEEEEESTTSCEEE
T ss_pred             eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC--------CcEEEEEecCCCCEEE
Confidence            1121  112345788999999998877766788999998 5665555443322        25788998 7876554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.53  E-value=6.3e-06  Score=62.15  Aligned_cols=151  Identities=5%  Similarity=-0.056  Sum_probs=90.3

Q ss_pred             CccEEEEEcCCC--cEEEEEccCCCCceeec----ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee---
Q psy18074          2 EAFVFTAANEDF--NLYSYDIRQLNSPLNVH----KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY---   72 (197)
Q Consensus         2 ~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~---   72 (197)
                      ++..++++..++  .|.+|+.... .....+    ......+.+++++|++..|+.+..++.|+.||..++......   
T Consensus       181 ~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~  259 (409)
T 3hrp_A          181 DKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE  259 (409)
T ss_dssp             TSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC
T ss_pred             CCCcEEEEecCCCceEEEEEcCCC-ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc
Confidence            456677776655  7888887642 222232    213456788999996555666777889999999877543220   


Q ss_pred             ecccccce-e-EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeecccc-c-c-----ccccccccceecccCccccee
Q psy18074         73 HTKRMQHV-T-HTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQ-R-Q-----ALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        73 ~~~~~~~v-~-~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~-~-----~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ..++.... . .++|+|+ +.++++-...+.|+.|+....  ...+.+.. . .     .....-.....++++|+|++.
T Consensus       260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred             ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence            11221222 3 9999995 555556667888999987643  22222221 0 0     000001235789999999866


Q ss_pred             eeec-C-cceEEeec
Q psy18074        143 ARHR-Q-VPRHIYNA  155 (197)
Q Consensus       143 ~~~~-~-~~~~i~~~  155 (197)
                      ++.. . ..+..|+.
T Consensus       338 vad~~~~~~I~~~~~  352 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EEETTTTCEEEEEET
T ss_pred             EEeCCCCCEEEEEEC
Confidence            6654 3 35666764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=1.1e-06  Score=70.51  Aligned_cols=129  Identities=9%  Similarity=0.006  Sum_probs=88.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCC----------C-Ce------------------------EEEEECCCCCE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMT----------S-AV------------------------TSVDYSPTGRE   48 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~-~v------------------------~~~~~sp~~~~   48 (197)
                      .+++.++.+|.++++|..+ ++.+..+....          + ++                        ..++++|++..
T Consensus       328 ~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~  406 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL  406 (677)
T ss_dssp             EEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred             eEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence            6788899999999999987 44443332110          0 01                        14678888887


Q ss_pred             EEEEeC-------------------------------------------CCcEEEEECCCCcccceeecccccceeEEEE
Q psy18074         49 FVAGGY-------------------------------------------DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW   85 (197)
Q Consensus        49 l~~~~~-------------------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~   85 (197)
                      +++...                                           .+.|..||+.+++.+.....+  ..+....+
T Consensus       407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~  484 (677)
T 1kb0_A          407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTL  484 (677)
T ss_dssp             EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEE
T ss_pred             EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcCcce
Confidence            776532                                           267999999999987776332  34455556


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         86 SLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        86 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ..++..++.++.+|.+++||..+++.+..+.......       ...+.|..+|+..
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~-------~~p~~y~~~G~~~  534 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-------AAPSTYMVDGRQY  534 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-------SCCEEEEETTEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc-------cCCEEEEeCCEEE
Confidence            7788888889999999999999999998876543211       1344556676533

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.52  E-value=4.7e-06  Score=62.99  Aligned_cols=153  Identities=7%  Similarity=-0.008  Sum_probs=96.1

Q ss_pred             CccEEEEEcCC------CcEEEEEccCCCCceeecccCC---CCeEEEEECCCCCEEEEEe-------------------
Q psy18074          2 EAFVFTAANED------FNLYSYDIRQLNSPLNVHKDMT---SAVTSVDYSPTGREFVAGG-------------------   53 (197)
Q Consensus         2 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-------------------   53 (197)
                      || +++++..+      +.|.++|..+ .+.+..+..-.   ..-..+-|+|+++.+++..                   
T Consensus       148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          148 DA-IYISALGNEEGEGPGGILMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SC-EEEEEEEETTSCSCCEEEEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             Ce-EEEEcCCCcCCCCCCeEEEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            45 66665554      6799999887 46666664221   2244578899999888874                   


Q ss_pred             CCCcEEEEECCCCcccceeecc-cccceeEEEE--ccCCCEEEEEe------CCCcEEEEEcCCCce--eeee--cccc-
Q psy18074         54 YDKSLRLYLAHQGHSRDIYHTK-RMQHVTHTVW--SLDNKFVISAS------DEMNLRVWKAHASEK--LGYV--NNKQ-  119 (197)
Q Consensus        54 ~d~~v~i~d~~~~~~~~~~~~~-~~~~v~~v~~--~~~~~~l~~~~------~dg~i~vwd~~~~~~--~~~~--~~~~-  119 (197)
                      .+..|.+||+.+++....+..+ .......+.|  +|++++++.++      .+++|.+|....+.-  ...+  .... 
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence            4689999999988766665443 1234556666  99999987655      677888776654321  1111  1100 


Q ss_pred             cccc-------ccccccceecccCcccceeeeec--CcceEEeecc
Q psy18074        120 RQAL-------DYSESLKQKYAHHPQIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus       120 ~~~~-------~~~~~~v~~~~~s~~~~~l~~~~--~~~~~i~~~~  156 (197)
                      ...+       .........+.+|+||++|..+.  ++.+.+|+..
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            0000       00012357888999999887443  3478888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.51  E-value=6.5e-07  Score=71.97  Aligned_cols=116  Identities=9%  Similarity=0.002  Sum_probs=74.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-----CCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC--------
Q psy18074         33 MTSAVTSVDYSPTGREFVAGG-----YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM--------   99 (197)
Q Consensus        33 ~~~~v~~~~~sp~~~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------   99 (197)
                      +...+..+.|||||++|+.+.     ....|++||+.+++.+......  .....++|+ ||+.|+.++.+.        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            344688899999999887532     2357999999999864432111  113578999 999998877664        


Q ss_pred             -----cEEEEEcCCCcee--eeecccc-ccccccccccceecccCcccceeeeec--C---cceEEeecch
Q psy18074        100 -----NLRVWKAHASEKL--GYVNNKQ-RQALDYSESLKQKYAHHPQIRRIARHR--Q---VPRHIYNAQA  157 (197)
Q Consensus       100 -----~i~vwd~~~~~~~--~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~--~---~~~~i~~~~~  157 (197)
                           .|++|++.+++..  ..+.... ..      .....+.|+|||++|+...  .   ..+.++++..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~------~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQH------HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGC------CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCC------eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence                 3999998876532  2222211 11      1135788999999886322  1   2456666543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.51  E-value=4.3e-06  Score=63.24  Aligned_cols=137  Identities=11%  Similarity=0.137  Sum_probs=89.5

Q ss_pred             cEEEEEcCCCcEEEEEccCC-C--Cceeecc------c-CCCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCc
Q psy18074          4 FVFTAANEDFNLYSYDIRQL-N--SPLNVHK------D-MTSAVTSVDYSPTGREFVAGGYD------KSLRLYLAHQGH   67 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~-~--~~~~~~~------~-~~~~v~~~~~sp~~~~l~~~~~d------~~v~i~d~~~~~   67 (197)
                      .++++|..++.|+++|+.+. .  +....+.      . .......+..+|+| .++++..+      +.|.++|..+.+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            35566788899999998632 1  2233331      1 11244567788999 66665444      789999999988


Q ss_pred             ccceeecccc--cceeEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeccccccccccc
Q psy18074         68 SRDIYHTKRM--QHVTHTVWSLDNKFVISAS-------------------DEMNLRVWKAHASEKLGYVNNKQRQALDYS  126 (197)
Q Consensus        68 ~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  126 (197)
                      .+.....+..  .....+.|+|+++.++++.                   ....|.+||+.+++.+.++.......    
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~----  251 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR----  251 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE----
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC----
Confidence            7766532211  2244578899999988874                   46889999999887777665531110    


Q ss_pred             ccccee--cccCcccceeeeecC
Q psy18074        127 ESLKQK--YAHHPQIRRIARHRQ  147 (197)
Q Consensus       127 ~~~v~~--~~~s~~~~~l~~~~~  147 (197)
                        ....  ++|+|+++++.....
T Consensus       252 --~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          252 --MALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             --EEEEEEECSSTTCCEEEEEEE
T ss_pred             --ccceeEeeECCCCCEEEEEEe
Confidence              0123  456999988775544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.49  E-value=1.4e-06  Score=64.78  Aligned_cols=102  Identities=6%  Similarity=-0.140  Sum_probs=76.5

Q ss_pred             cEEEEEcCCC----cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCCccc
Q psy18074          4 FVFTAANEDF----NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQGHSR   69 (197)
Q Consensus         4 ~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~~~~   69 (197)
                      .++++...++    .|.++|..+ .+.+..+.....+  .+.++|+++.+++++          .++.|.+||+.+++..
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t-~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             eEEEECCccCCccceEEEEECCC-CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            4556655555    788999987 5667777654555  799999999888876          3678999999999887


Q ss_pred             ceeeccc------ccceeEEEEccCCCEEEEEeC--CCcEEE--EEcCC
Q psy18074         70 DIYHTKR------MQHVTHTVWSLDNKFVISASD--EMNLRV--WKAHA  108 (197)
Q Consensus        70 ~~~~~~~------~~~v~~v~~~~~~~~l~~~~~--dg~i~v--wd~~~  108 (197)
                      ..+..+.      ......++++|||++++.+..  +..+.+  +|+.+
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            7763320      124678999999999987764  456888  99876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.49  E-value=1.3e-06  Score=70.32  Aligned_cols=105  Identities=13%  Similarity=0.252  Sum_probs=68.6

Q ss_pred             CccEEEE-----EcCCCcEEEEEccCCCCceee-cccCCCCeEEEEECCCCCEEEEEeCCC-------------cEEEEE
Q psy18074          2 EAFVFTA-----ANEDFNLYSYDIRQLNSPLNV-HKDMTSAVTSVDYSPTGREFVAGGYDK-------------SLRLYL   62 (197)
Q Consensus         2 ~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~-------------~v~i~d   62 (197)
                      ||++||-     |+....|++||+.+ ++.+.. +..  .....++|+ |++.|+.++.+.             .|++|+
T Consensus       139 Dg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~  214 (693)
T 3iuj_A          139 DGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHR  214 (693)
T ss_dssp             TSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEE
T ss_pred             CCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEE
Confidence            6777763     33335799999987 343322 211  113567899 999998887764             499999


Q ss_pred             CCCCcccc--eeec-c-cccceeEEEEccCCCEEEEEe----CCCcEEEEEcCCCc
Q psy18074         63 AHQGHSRD--IYHT-K-RMQHVTHTVWSLDNKFVISAS----DEMNLRVWKAHASE  110 (197)
Q Consensus        63 ~~~~~~~~--~~~~-~-~~~~v~~v~~~~~~~~l~~~~----~dg~i~vwd~~~~~  110 (197)
                      +.++....  .+.. . |.....++.|+|||++|+...    ..+.|+++|+.++.
T Consensus       215 lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          215 LGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             TTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             CCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            98765422  2211 2 234577899999999986432    23589999997764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.48  E-value=4.6e-06  Score=59.04  Aligned_cols=151  Identities=9%  Similarity=-0.030  Sum_probs=97.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccc----cc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR----MQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~   78 (197)
                      +.++++.-.++.+.++|..+ .+.+..+......-  ..++++|..++++..++.|.++|..+.+.......+.    ..
T Consensus        76 ~~lyv~t~~~~~v~viD~~t-~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRT-LSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTT-TEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEEecCCEEEEEECCC-CcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence            35666666788999999986 45566664221222  3345578878777778999999999887766653321    12


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc--c---ccccccccceecccCcccceee-eecCc-ceE
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR--Q---ALDYSESLKQKYAHHPQIRRIA-RHRQV-PRH  151 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~s~~~~~l~-~~~~~-~~~  151 (197)
                      .++.+.|. +|...+....++.|.+.|+.+++.+..+.....  .   .-.......+.++|+|+++.+. ++..- .+.
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            46788887 776556666788999999999998887764310  0   0000012357999999886555 44333 444


Q ss_pred             Eeecch
Q psy18074        152 IYNAQA  157 (197)
Q Consensus       152 i~~~~~  157 (197)
                      ..++..
T Consensus       232 ~i~l~~  237 (266)
T 2iwa_A          232 EIKLHL  237 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            444433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.41  E-value=4.6e-06  Score=67.01  Aligned_cols=79  Identities=10%  Similarity=-0.041  Sum_probs=56.5

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      |.|..||+.+++.+.....+  .......+...+..++.++.||.++.||..+|+.+..+.......       ...+.|
T Consensus       455 g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~-------~~p~ty  525 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM-------AAPVTY  525 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-------SCCEEE
T ss_pred             eeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc-------cCceEE
Confidence            77999999999987776332  333444566678889999999999999999999998776543311       134556


Q ss_pred             Ccccc-eee
Q psy18074        136 HPQIR-RIA  143 (197)
Q Consensus       136 s~~~~-~l~  143 (197)
                      ..+|+ +++
T Consensus       526 ~~~G~qyv~  534 (689)
T 1yiq_A          526 SVDGEQYVT  534 (689)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            66765 444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.31  E-value=1.1e-05  Score=61.13  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEECCCCcccceeecccccceeEEEEccCCC-EEEEEe-CCCcEEEEEc
Q psy18074         39 SVDYSPTGREFVAGGY----------DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-FVISAS-DEMNLRVWKA  106 (197)
Q Consensus        39 ~~~~sp~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~-~dg~i~vwd~  106 (197)
                      .++++|++..+++...          .+.|.++|+.+.+.+..+..+  .....++|+|||+ ++++.. .++.|.++|+
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            3689999888776542          357999999999988777554  4689999999999 788776 5899999999


Q ss_pred             CCCceeeee
Q psy18074        107 HASEKLGYV  115 (197)
Q Consensus       107 ~~~~~~~~~  115 (197)
                      .+++.+..+
T Consensus       401 ~t~kvv~tI  409 (426)
T 3c75_H          401 ATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999988876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.30  E-value=3.5e-05  Score=54.16  Aligned_cols=138  Identities=8%  Similarity=0.048  Sum_probs=90.6

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc---c-ccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK---R-MQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~-~~~   79 (197)
                      .++++.-.++.+.+||..+ .+.+..+.- ...-..++  +++..|+.+..++.|.++|..+.+........   . ...
T Consensus        98 ~ly~ltw~~~~v~v~D~~t-~~~~~ti~~-~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~  173 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRN-LRQVRSFNY-DGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE  173 (262)
T ss_dssp             EEEEEESSSSEEEEEETTT-CCEEEEEEC-SSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred             EEEEEEeeCCEEEEEECcc-CcEEEEEEC-CCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence            4555555688899999987 456666643 22223444  47777877777788999999988776665321   1 134


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc--c--cccccccceecccCcccceeeeec
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ--A--LDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~--~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      ++.+.|. +|+..+....++.|.+.|..+++.+..+....-.  .  .....+..+.++|+|+++.|....
T Consensus       174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            5567776 7776666667889999999999998877543110  0  011123468999999776665433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.27  E-value=4.5e-05  Score=53.06  Aligned_cols=139  Identities=6%  Similarity=0.092  Sum_probs=91.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc-c---cc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK-R---MQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~---~~   78 (197)
                      +.++...-.++.+.+||..+ .+.+..+.. .+.-..++  +++..|+.+..++.|.++|..+......+... +   ..
T Consensus        75 ~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           75 DRLIQLTWRNHEGFVYDLAT-LTPRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             TEEEEEESSSSEEEEEETTT-TEEEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEEeeCCEEEEEECCc-CcEEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            34556666788999999987 456666643 22334555  46777777777899999999988776655322 1   13


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc--ccc---ccccccceecccCcccceee-eec
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR--QAL---DYSESLKQKYAHHPQIRRIA-RHR  146 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~---~~~~~~v~~~~~s~~~~~l~-~~~  146 (197)
                      .++.+.|. +|+..+....+..|.+.|..+++.+..+....-  ...   ....+..+.++++|+++.|. +|-
T Consensus       151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          151 NLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            45667765 677666666788999999999998887764321  000   11234568999999765554 543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.26  E-value=6.8e-05  Score=52.79  Aligned_cols=138  Identities=8%  Similarity=0.010  Sum_probs=92.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc-c---cc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK-R---MQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~---~~   78 (197)
                      ..++++.-.++.+.+||..+ .+.+..+.. ...-..++  +++..|+.+..++.|.++|..+.+....+... +   ..
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~  181 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMP-PQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVE  181 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTT-TEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEEccCCEEEEEECCc-CcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccc
Confidence            35556666788999999987 456666643 22224444  47888888878999999999988776655221 1   12


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc--c---cccccccceecccCcccceee-ee
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ--A---LDYSESLKQKYAHHPQIRRIA-RH  145 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~---~~~~~~~v~~~~~s~~~~~l~-~~  145 (197)
                      .++.+.|. +|+..+....++.|.+.|..+++.+..+....-.  .   .....+..+.++|+|+++.|. +|
T Consensus       182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            45677776 7776666667889999999999988877643110  0   011123468999999765554 44

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.25  E-value=4.4e-05  Score=53.74  Aligned_cols=149  Identities=9%  Similarity=-0.033  Sum_probs=92.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++.+.+.+|.|+.+|+.+ ++....+....-.-..+++.. +..++....++.+.+||..+.+.+..+....  .-.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~--eGw  139 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLES-AQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG--EGW  139 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSC-SSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS--CCC
T ss_pred             CCEEEEEcCCCCEEEEEECCC-CcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC--cee
Confidence            356778888889999999987 455555422111223455542 2344445578999999999998887774432  223


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~~  160 (197)
                      .+  +++++.|+.+..++.|.++|..+.+.+..+........   -..++.+.|. +|+..+... .+.+.+.+....+.
T Consensus       140 GL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          140 GL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             CE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred             EE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence            34  35788888777789999999999888877654332100   0012445555 666555443 34566666655443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.25  E-value=2.3e-05  Score=61.26  Aligned_cols=132  Identities=7%  Similarity=-0.062  Sum_probs=85.5

Q ss_pred             CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC-----------------------------------
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK-----------------------------------   56 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----------------------------------   56 (197)
                      ++.+.+.|..+. +....+.- .+....++++|+|.++++.+.+.                                   
T Consensus       174 ~~~vtvID~~t~-~v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          174 VNVFTAVDADKW-EVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEETTTT-EEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             CceEEEEECCCC-eEEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            456888888763 44444432 12456788999999998877442                                   


Q ss_pred             ---cEEEEECCC--Ccc-cceeecccccceeEEEEccCCCEEEE-EeCCCcEEEEEcCCCc------------eeeeecc
Q psy18074         57 ---SLRLYLAHQ--GHS-RDIYHTKRMQHVTHTVWSLDNKFVIS-ASDEMNLRVWKAHASE------------KLGYVNN  117 (197)
Q Consensus        57 ---~v~i~d~~~--~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~vwd~~~~~------------~~~~~~~  117 (197)
                         .|.+.|..+  +.. +..+..+  ....++.++|||++++. +..+..|.++|+.+.+            ....+..
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             EECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence               477777776  433 2333232  45678999999999875 4568899999998653            1222222


Q ss_pred             ccccccccccccceecccCcccceee-ee-cCcceEEeecch
Q psy18074        118 KQRQALDYSESLKQKYAHHPQIRRIA-RH-RQVPRHIYNAQA  157 (197)
Q Consensus       118 ~~~~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~~~~i~~~~~  157 (197)
                      ..         ....++|+|+| .+. +. -+..+..|+...
T Consensus       330 G~---------gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GL---------GPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CS---------CEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CC---------CcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            22         24788999999 443 33 345788898765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.23  E-value=0.00042  Score=48.79  Aligned_cols=144  Identities=6%  Similarity=0.010  Sum_probs=84.3

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++-..++.|..+++.. ......+.........++++|++..++. -...+.|.++++......... ........
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~~~~~~P~  125 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-DTGLVNPR  125 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEE
T ss_pred             CEEEEEECCCCEEEEEecCC-CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-ECCCCCcc
Confidence            45666776778899999874 2322223222356789999997665554 455678999998744322222 21224678


Q ss_pred             EEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--cceEEeecc
Q psy18074         82 HTVWSLDNKFVISASD---EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--VPRHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~~~i~~~~  156 (197)
                      .++++|++..|+.+..   .+.|..+++.. .....+....       ......+++++++..|.....  ..+..++..
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence            9999997666554443   36788888753 2222221110       012468889987665543332  345555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.21  E-value=4.1e-05  Score=55.38  Aligned_cols=133  Identities=11%  Similarity=-0.007  Sum_probs=85.3

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEE
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTV   84 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~   84 (197)
                      .+..++.++.|..+|..  +............+.++...+++. ++.++.++.|+.+|.. +........ ....+.++.
T Consensus       109 ~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~  183 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAAS  183 (330)
T ss_dssp             EEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCE
T ss_pred             EEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeE
Confidence            45667778889999987  344444444444566667776666 5567778899999998 766555432 234567777


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEee
Q psy18074         85 WSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus        85 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      ..+++..++..   +.+..+| .+++..........        .+.++...++|...+...+..+..++
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~--------~~~~~~~~~~g~l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYW--------TVTRPAISEDGTIYVTSLDGHLYAIN  241 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSC--------CCSCCEECTTSCEEEEETTTEEEEEC
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCc--------ceeceEECCCCeEEEEcCCCeEEEEC
Confidence            77788765544   7799999 66766655443221        24566777777666655545555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.00013  Score=55.43  Aligned_cols=140  Identities=5%  Similarity=-0.031  Sum_probs=81.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C----cEEEEECCCCccc--ceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K----SLRLYLAHQGHSR--DIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~----~v~i~d~~~~~~~--~~~~~~   75 (197)
                      +.++++-.. +.|+.+|+..  ..+..+.........++|++++..|+.+... +    .+..++. .+...  ..+.. 
T Consensus       150 g~Lyv~d~~-~~I~~id~~~--~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-  224 (430)
T 3tc9_A          150 NHLYLVGEQ-HPTRLIDFEK--EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-  224 (430)
T ss_dssp             EEEEEEEBT-EEEEEEETTT--TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-
T ss_pred             CeEEEEeCC-CcEEEEECCC--CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-
Confidence            444444433 6788888874  2333443445668899999999966665542 2    2333443 33322  12211 


Q ss_pred             cccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--cceEE
Q psy18074         76 RMQHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--VPRHI  152 (197)
Q Consensus        76 ~~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~~~i  152 (197)
                       ......++++| ++..+++-...+.|..++...+...........       .....++|+|+|++|.....  ..+..
T Consensus       225 -~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~-------~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          225 -GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS-------GWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             -CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS-------SCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC-------CcceeEEEcCCCCEEEEEECCCCEEEE
Confidence             24567889999 677666666778999999876554222111110       12468999999985553332  34444


Q ss_pred             eec
Q psy18074        153 YNA  155 (197)
Q Consensus       153 ~~~  155 (197)
                      ++.
T Consensus       297 ~~~  299 (430)
T 3tc9_A          297 SDY  299 (430)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.21  E-value=4.2e-05  Score=56.79  Aligned_cols=79  Identities=10%  Similarity=0.025  Sum_probs=61.9

Q ss_pred             EEECCCCCEEEEEeC---------CCcEEEEECCCCcccceeecccccceeEEEEccCCCE-EEEEe-CCCcEEEEEcCC
Q psy18074         40 VDYSPTGREFVAGGY---------DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKF-VISAS-DEMNLRVWKAHA  108 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~---------d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~-~dg~i~vwd~~~  108 (197)
                      +.++|++..++.+..         +..+.++|+.+++.+..+..+  .....++|+|||++ +++.. .++.|.++|+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            689999998876543         235669999999887776554  36899999999985 55666 599999999999


Q ss_pred             Cceeeeeccccc
Q psy18074        109 SEKLGYVNNKQR  120 (197)
Q Consensus       109 ~~~~~~~~~~~~  120 (197)
                      ++.+..+.....
T Consensus       347 ~kvv~~I~vg~~  358 (368)
T 1mda_H          347 DQDQSSVELDKG  358 (368)
T ss_dssp             CEEEEECCCCSC
T ss_pred             CcEEEEEECCCC
Confidence            999888765543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.20  E-value=8.8e-05  Score=58.03  Aligned_cols=147  Identities=7%  Similarity=0.037  Sum_probs=96.5

Q ss_pred             CccEEEEEc-CCCcEEEEEccCCCCceeeccc-CCCCeEEEEE-C-CCCCEEEEEe------------------CCCcEE
Q psy18074          2 EAFVFTAAN-EDFNLYSYDIRQLNSPLNVHKD-MTSAVTSVDY-S-PTGREFVAGG------------------YDKSLR   59 (197)
Q Consensus         2 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~-s-p~~~~l~~~~------------------~d~~v~   59 (197)
                      ||.++.... .++.|.+.|+.+. +....+.- .......+++ + |++.++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            556665544 4556999999873 54443321 1245778887 5 9999998874                  345788


Q ss_pred             EEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC--------------------------------------cE
Q psy18074         60 LYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM--------------------------------------NL  101 (197)
Q Consensus        60 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------------------------------------~i  101 (197)
                      +.|..+.+.......+  +....++++|+|+++++.+.+.                                      .|
T Consensus       179 vID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999988776666443  2456788999999998776443                                      35


Q ss_pred             EEEEcCC--Cce-eeeeccccccccccccccceecccCcccceeeeec--CcceEEeecchhhH
Q psy18074        102 RVWKAHA--SEK-LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QVPRHIYNAQAEHR  160 (197)
Q Consensus       102 ~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~~~i~~~~~~~~  160 (197)
                      .|.|..+  +.. +..+....         ...++.++|||+++....  ...+.+++..+.+.
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~---------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~  311 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIAN---------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA  311 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEES---------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EEEeCcccCCceeEEEEecCC---------CceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence            5666655  322 22232221         247899999999887554  34778998876543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.19  E-value=0.00016  Score=53.50  Aligned_cols=136  Identities=11%  Similarity=-0.022  Sum_probs=84.7

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHT   83 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v   83 (197)
                      ..++.++.++.+..+|..+ ++......  ......+..  ++..++.++.++.|..+|..+++.+.............+
T Consensus       240 ~~v~~~~~~g~l~~~d~~t-G~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLRS-GQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TEEEEECTTSCEEEEETTT-CCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred             CEEEEEecCcEEEEEECCC-CcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence            4566667788999999986 44443332  223444444  467788888899999999999987665431111222223


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEee
Q psy18074         84 VWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYN  154 (197)
Q Consensus        84 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~  154 (197)
                      ..  .+..++.++.+|.+..+|..+++.+.........        +.......++..++...++.+..|+
T Consensus       315 ~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~--------~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          315 VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG--------FQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC--------BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc--------ceeCCEEECCEEEEEeCCCEEEEEe
Confidence            22  2567888888999999999999987766542221        1111111355555555555666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.19  E-value=9.1e-05  Score=52.41  Aligned_cols=149  Identities=9%  Similarity=-0.056  Sum_probs=92.4

Q ss_pred             CccEEEEEcC--CCcEEEEEccCCCCceeeccc-CCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccc
Q psy18074          2 EAFVFTAANE--DFNLYSYDIRQLNSPLNVHKD-MTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      |+.++++.+.  ++.|.++|+.+ ++.+..+.- .......+++.  +..++ +...++.+.++|..+.+.+..+..+ .
T Consensus        31 dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~  106 (266)
T 2iwa_A           31 NDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M  106 (266)
T ss_dssp             TTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S
T ss_pred             CCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C
Confidence            3556666543  57899999987 465655432 12223355554  44554 4557889999999998887776433 1


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      ..  ...+++||+.++.+..++.|.++|..+.+.+..+........   -..++.+.|. +|...+... .+.+.+.+..
T Consensus       107 ~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p---~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          107 KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR---VIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc---cccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence            11  233566888777776789999999999887777654322100   0013456666 665555443 4567777776


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ..+.
T Consensus       181 tg~V  184 (266)
T 2iwa_A          181 DGTL  184 (266)
T ss_dssp             TCCE
T ss_pred             CCcE
Confidence            5544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.16  E-value=2.9e-05  Score=61.06  Aligned_cols=63  Identities=11%  Similarity=0.001  Sum_probs=45.9

Q ss_pred             CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         55 DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        55 d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      ++.|..||+.+++.+......  ..+....+...+..++.++.|+.++.||..+|+.+..+....
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence            478999999999887765332  223333333456677788999999999999999998776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.15  E-value=4.5e-05  Score=53.58  Aligned_cols=148  Identities=7%  Similarity=-0.009  Sum_probs=90.5

Q ss_pred             CccEEEEEcCCC--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANEDF--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      ++.++.+.+.+|  .|+.+|+.+ ++....+.- ..........+++..|+. ...++.+.+||..+.+.+..+..+.  
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--  127 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--  127 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             CCEEEEECCCCCCceEEEEECCC-CcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--
Confidence            456677776665  899999987 555555543 223322222334555554 4468899999999998887774432  


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                        ....+++++..|+.+..++.|.++|..+.+.+..+..... ..+    ..++.+.|. +|+..+... .+.+.+.+..
T Consensus       128 --eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~----~~lNELe~~-~G~lyan~w~~~~I~vIDp~  200 (262)
T 3nol_A          128 --EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL----PELNELEWV-DGEIFANVWQTNKIVRIDPE  200 (262)
T ss_dssp             --CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred             --CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc----cccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence              2233446777777666688899999999888777654321 110    012345554 666555443 3456666665


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ..+.
T Consensus       201 tG~V  204 (262)
T 3nol_A          201 TGKV  204 (262)
T ss_dssp             TCBE
T ss_pred             CCcE
Confidence            5543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.14  E-value=5.8e-05  Score=61.30  Aligned_cols=105  Identities=8%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             CccEEEEE-cCC----CcEEEEEccCCCCce-eecccCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCccc-
Q psy18074          2 EAFVFTAA-NED----FNLYSYDIRQLNSPL-NVHKDMTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHSR-   69 (197)
Q Consensus         2 ~~~~l~~~-~~d----~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~~-   69 (197)
                      ||+.||-+ ..+    ..|+++|+.+....+ ..+.   .....+.|+|||+.|+....+     ..|+++++.++... 
T Consensus       185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~  261 (751)
T 2xe4_A          185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED  261 (751)
T ss_dssp             TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC
T ss_pred             CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc
Confidence            67666533 222    249999998630211 1111   123468899999988776654     36888888776533 


Q ss_pred             -ceeecccccceeEEEEccCCCEEEEEe---CCCcEEEEEcCCC
Q psy18074         70 -DIYHTKRMQHVTHTVWSLDNKFVISAS---DEMNLRVWKAHAS  109 (197)
Q Consensus        70 -~~~~~~~~~~v~~v~~~~~~~~l~~~~---~dg~i~vwd~~~~  109 (197)
                       ..+..........+.|+|||++|+..+   ....|.++|+.++
T Consensus       262 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          262 VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence             222222224567889999999988544   2446888898765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.12  E-value=0.00026  Score=51.34  Aligned_cols=144  Identities=7%  Similarity=0.003  Sum_probs=84.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeeccc--------------------CCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKD--------------------MTSAVTSVDYSPTGREFVAGGYDKSLRLY   61 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------------~~~~v~~~~~sp~~~~l~~~~~d~~v~i~   61 (197)
                      ++.++.++..++.|..||... .. ...+..                    ....+.+++++++...|+.+...+.+..+
T Consensus        29 ~g~~l~v~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~  106 (322)
T 2fp8_A           29 TNKGFYTSVQDGRVIKYEGPN-SG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVV  106 (322)
T ss_dssp             TCSSEEEECTTSEEEEECCTT-TC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             CCCEEEEEcCCCeEEEECCCC-Cc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEE
Confidence            566677788888999998764 22 222210                    01357889999833345555445558888


Q ss_pred             ECCCCcccceee--c-ccccceeEEEEcc-CCCEEEEEeC-----------------CCcEEEEEcCCCceeeeeccccc
Q psy18074         62 LAHQGHSRDIYH--T-KRMQHVTHTVWSL-DNKFVISASD-----------------EMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        62 d~~~~~~~~~~~--~-~~~~~v~~v~~~~-~~~~l~~~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      |..++.......  . .....+..+++.+ +|+..++-..                 ++.|..||..+++......... 
T Consensus       107 d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-  185 (322)
T 2fp8_A          107 GSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH-  185 (322)
T ss_dssp             CTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES-
T ss_pred             eCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc-
Confidence            877554322111  1 1113578899999 9987766432                 3678888887665432221111 


Q ss_pred             cccccccccceecccCcccceeeee-c-CcceEEeecc
Q psy18074        121 QALDYSESLKQKYAHHPQIRRIARH-R-QVPRHIYNAQ  156 (197)
Q Consensus       121 ~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~~~~i~~~~  156 (197)
                              ....++++|+++.|... . ...+..|+..
T Consensus       186 --------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          186 --------VPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             --------CCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             --------cCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence                    13678999998755433 2 3456666654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.08  E-value=0.0011  Score=46.71  Aligned_cols=106  Identities=4%  Similarity=-0.028  Sum_probs=67.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeecccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +.++++-...+.|.++++.. ................++++|++..|+.+..   .+.|..+++.... ...+.......
T Consensus        91 ~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~  168 (267)
T 1npe_A           91 RTIFWTDSQLDRIEVAKMDG-TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGL  168 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSC
T ss_pred             CeEEEEECCCCEEEEEEcCC-CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCC
Confidence            45666666677888888863 2222222222246789999997666655543   4688888876432 22222222346


Q ss_pred             eeEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q psy18074         80 VTHTVWSLDNKFVI-SASDEMNLRVWKAHASE  110 (197)
Q Consensus        80 v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~  110 (197)
                      ...++++|++..|+ +-...+.|.++|+....
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            78999999877665 44556789999987543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=0.00016  Score=58.19  Aligned_cols=55  Identities=4%  Similarity=-0.020  Sum_probs=35.9

Q ss_pred             EEEEEccCCCCceeeccc--CC-------CCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCcccc
Q psy18074         15 LYSYDIRQLNSPLNVHKD--MT-------SAVTSVDYSPTGR---EFVAGGYDKSLRLYLAHQGHSRD   70 (197)
Q Consensus        15 i~i~d~~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~~~~~d~~v~i~d~~~~~~~~   70 (197)
                      |..+|..+ ++..-.+..  |.       .++.......+|.   .++.++.+|.++++|..+|+.+.
T Consensus       277 v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          277 IVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             EEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence            89999987 454444432  21       1222222222554   68889999999999999998763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.04  E-value=0.00034  Score=49.16  Aligned_cols=127  Identities=12%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             ecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcC
Q psy18074         29 VHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH  107 (197)
Q Consensus        29 ~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~  107 (197)
                      .+.+-...+..++|+|++..|+ +...++.|...|.. +..+..+........-.+++.+++.++++...++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999876555 57778899999998 776666533323567889999999887777677889999886


Q ss_pred             CCceeeeeccccccc-cccccccceecccCcccceee-eecCcceEEeecc
Q psy18074        108 ASEKLGYVNNKQRQA-LDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQ  156 (197)
Q Consensus       108 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~  156 (197)
                      ....+.......-.. ....+.....++|+|.++.|. +....+..||...
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            544221111100000 001122357999999875444 5555577777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.01  E-value=0.00018  Score=51.96  Aligned_cols=139  Identities=9%  Similarity=-0.028  Sum_probs=81.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+++. +  +.|..|| .+ +.....+......+.++...++|. +..++.++.|..++. ++.....+.. ....+.
T Consensus       187 ~g~l~v~-t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~-~~~~~~  258 (330)
T 3hxj_A          187 DGTIYFG-S--DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT-GKRIES  258 (330)
T ss_dssp             TCCEEEE-S--SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC-SSCCCS
T ss_pred             CCEEEEE-e--CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC-CCCccc
Confidence            3444443 3  6788888 43 344444444445677788887765 455666777888874 4444443322 223344


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      .+.+.+++. |..++.+|.+..+|. +++.+..+....        ..+.++...++|+..+...++-+.+......
T Consensus       259 ~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~--------~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          259 SPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGS--------WIIATPVIDENGTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSS--------CCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred             cceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCC--------ccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence            455655664 556677878999986 566655543322        1245666778888777777666666655433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.00  E-value=8.2e-05  Score=60.42  Aligned_cols=112  Identities=6%  Similarity=0.006  Sum_probs=69.8

Q ss_pred             CeEEEEEC-CCCCEEEEEeC-CC----cEEEEECCCC-cccceeecccccceeEEEEccCCCEEEEEeCC-----CcEEE
Q psy18074         36 AVTSVDYS-PTGREFVAGGY-DK----SLRLYLAHQG-HSRDIYHTKRMQHVTHTVWSLDNKFVISASDE-----MNLRV  103 (197)
Q Consensus        36 ~v~~~~~s-p~~~~l~~~~~-d~----~v~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~v  103 (197)
                      .+....|| |||++|+.+.. +|    .|+++|+.++ +.+.....   .....++|+|||+.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998876432 33    5999999988 63221111   124578999999988866554     35788


Q ss_pred             EEcCCCcee--eeeccccccccccccccceecccCcccceeeeec--Cc--ceEEeecch
Q psy18074        104 WKAHASEKL--GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QV--PRHIYNAQA  157 (197)
Q Consensus       104 wd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~~~i~~~~~  157 (197)
                      +++.+++..  ..+.....       .....+.|||||++|+...  ..  .+.++++..
T Consensus       252 ~~lgt~~~~~~lv~~~~~~-------~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNP-------LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EETTSCGGGCEEEEECCCT-------TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EECCCCchhcEEEEecCCC-------ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            888766432  22211111       1135778999999888433  22  345555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.98  E-value=0.00048  Score=47.95  Aligned_cols=146  Identities=7%  Similarity=-0.004  Sum_probs=87.1

Q ss_pred             ccEEEEEcCC--CcEEEEEccCCCCceeecccCCCC-eEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANED--FNLYSYDIRQLNSPLNVHKDMTSA-VTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++.+.+..  ..|+.+|+.+ ++....+.-.... -..++.  .+..|+ ....++.+.+||..+.+.+..+..+.  
T Consensus        31 ~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~--  105 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLET-GRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG--  105 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS--
T ss_pred             CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC--
Confidence            4556666654  4799999987 5655555332221 123444  345554 45578999999999998887774432  


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc-ccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ-ALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      .-..+  .+++..|+.+..++.|.++|..+.+.+..+...... .+    ..++.+.|. +|+..+... .+.+.+.+..
T Consensus       106 ~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~I~vIDp~  178 (243)
T 3mbr_X          106 EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSRIARIDPA  178 (243)
T ss_dssp             CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTEEEEECTT
T ss_pred             CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCeEEEEECC
Confidence            22344  456777776667889999999998887766543211 00    012334433 555554332 3455666655


Q ss_pred             hhhH
Q psy18074        157 AEHR  160 (197)
Q Consensus       157 ~~~~  160 (197)
                      ..+.
T Consensus       179 tG~V  182 (243)
T 3mbr_X          179 SGKV  182 (243)
T ss_dssp             TCBE
T ss_pred             CCCE
Confidence            5443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.96  E-value=0.0003  Score=56.53  Aligned_cols=58  Identities=7%  Similarity=-0.022  Sum_probs=37.9

Q ss_pred             cEEEEEccCCCCceeeccc--CC-------CCeEEEEECCCC---CEEEEEeCCCcEEEEECCCCccccee
Q psy18074         14 NLYSYDIRQLNSPLNVHKD--MT-------SAVTSVDYSPTG---REFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~--~~-------~~v~~~~~sp~~---~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      .|..+|..+ ++....++.  |.       .....+....+|   ..++.++.+|.++++|..+|+.+...
T Consensus       284 sv~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          284 SIVALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             EEEEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence            488888887 444444322  21       122223333467   57888999999999999999876554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.95  E-value=0.00032  Score=51.88  Aligned_cols=110  Identities=11%  Similarity=0.033  Sum_probs=71.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC---------CCCe-EEEEECCCCCEEEEEeCCCcEEEEECCCCccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM---------TSAV-TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~v-~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      +..+++++.++.|+.||..+ ++....+...         ...+ ..+..  ++..++.++.++.|+.+|..+|+.+...
T Consensus        53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            34566777788999999986 4444333321         1222 22222  4667888889999999999999887665


Q ss_pred             ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         73 HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      .... ........  .+..++.++.++.+..+|..+|+.+......
T Consensus       130 ~~~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          130 KVAG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ECSS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            3321 11111222  2446777888999999999999988766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.93  E-value=0.00016  Score=57.02  Aligned_cols=80  Identities=10%  Similarity=0.037  Sum_probs=53.0

Q ss_pred             CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecc
Q psy18074         55 DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYA  134 (197)
Q Consensus        55 d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  134 (197)
                      +|.|.-||+.+++.+......  ..+..-.....+.+++.++.|+.++.||..+|+.+..+.......       -..+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~-------a~P~~  535 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV-------SPPIT  535 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-------SCCEE
T ss_pred             cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc-------cCceE
Confidence            578999999999887665332  222221222346678889999999999999999998876543210       12345


Q ss_pred             cCcccc-eee
Q psy18074        135 HHPQIR-RIA  143 (197)
Q Consensus       135 ~s~~~~-~l~  143 (197)
                      |..+|+ +++
T Consensus       536 y~~~G~qYv~  545 (582)
T 1flg_A          536 WEQDGEQYLG  545 (582)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            556765 554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.81  E-value=0.0028  Score=44.50  Aligned_cols=152  Identities=11%  Similarity=0.144  Sum_probs=86.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC--ceeecc------cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECC---CCcccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS--PLNVHK------DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH---QGHSRD   70 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~---~~~~~~   70 (197)
                      ++.++++.-.++.+.++++.....  ......      .......+++|+|.+..|+++.......+|.+.   .+..+.
T Consensus        80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~  159 (255)
T 3qqz_A           80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH  159 (255)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence            456666666778899998764332  111111      123456899999998877776655444444443   111111


Q ss_pred             eee------cccccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCccccee
Q psy18074         71 IYH------TKRMQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        71 ~~~------~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                      ...      ..+...+..++++|. +++++.+.....+..+|.. ++.+..+.-... ..+...-.....++|.++|+..
T Consensus       160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly  238 (255)
T 3qqz_A          160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY  238 (255)
T ss_dssp             EEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred             eecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence            110      112346789999996 4555666777888899976 555544432211 0010001124789999999876


Q ss_pred             eeecCcceEEeecc
Q psy18074        143 ARHRQVPRHIYNAQ  156 (197)
Q Consensus       143 ~~~~~~~~~i~~~~  156 (197)
                      +++..+  .+|...
T Consensus       239 IvsE~n--~~y~f~  250 (255)
T 3qqz_A          239 IVSEPN--RFYRFT  250 (255)
T ss_dssp             EEETTT--EEEEEE
T ss_pred             EEcCCc--eEEEEE
Confidence            676554  555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.79  E-value=0.0044  Score=44.51  Aligned_cols=105  Identities=9%  Similarity=0.089  Sum_probs=65.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C-cEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K-SLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++.++++...++.|..||...  .....+ .....+.+++++++|+.+++.... + .|..++..++.............
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g--~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  118 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDG--NQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  118 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTC--CEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             CCCEEEEeCCCCeEEEECCCC--ceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccc
Confidence            567777777788888888763  322222 224568899999999966654332 2 47777877776543322222233


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      ...++..+++..+++-..++.|.++|..++
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            455555565554555556888999987654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.76  E-value=0.002  Score=48.92  Aligned_cols=131  Identities=7%  Similarity=0.040  Sum_probs=74.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC----C-cEEEEECCCCccc-ceeeccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD----K-SLRLYLAHQGHSR-DIYHTKR   76 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~-~v~i~d~~~~~~~-~~~~~~~   76 (197)
                      +.++++-.. +.|+.+|+.. +. +..+........+++++++|. |+.+...    . .+..++...+... ..+  ..
T Consensus       153 g~Lyv~D~~-~~I~~id~~~-g~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~  226 (433)
T 4hw6_A          153 DDLYWVGQR-DAFRHVDFVN-QY-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL--CN  226 (433)
T ss_dssp             CEEEEECBT-SCEEEEETTT-TE-EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--EE
T ss_pred             CEEEEEeCC-CCEEEEECCC-CE-EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--cc
Confidence            455555443 7888888864 33 334434455689999999999 4444332    1 2333333222110 111  11


Q ss_pred             ccceeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         77 MQHVTHTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        77 ~~~v~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ......++++| +|.+.++-..++.|+.+|..++.....+......      .....++|+|++++|...
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~------~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK------GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC------SSCEEEEECTTSSEEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC------CCcccEEEeCCCCEEEEE
Confidence            24567788999 6776666666788999998866652222111111      012469999999855533

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.76  E-value=0.00027  Score=56.72  Aligned_cols=62  Identities=11%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         55 DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        55 d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      +|.|..||+.+++.+......  .......+...+.+++.++.|+.++.||..+++.+..+...
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            377999999999987765332  33333445567888889999999999999999998877654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.75  E-value=0.0039  Score=45.36  Aligned_cols=151  Identities=8%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCcee-eccc----CC--CCeEEEEE---CCCCCEEEEEe-------------CCCcE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLN-VHKD----MT--SAVTSVDY---SPTGREFVAGG-------------YDKSL   58 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~----~~--~~v~~~~~---sp~~~~l~~~~-------------~d~~v   58 (197)
                      ++.++++.-..+.|..||... +.... .+.+    ..  ..+.++.|   .|++..+++..             .+..|
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~-~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v  102 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKT-QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF  102 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTT-CCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred             CCEEEEEeccCCEEEEEcCCC-CeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence            366777777899999999874 22222 2222    11  13689999   68877777543             25779


Q ss_pred             EEEECC---CCcccceeecc------------cccceeEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeeeeccccccc
Q psy18074         59 RLYLAH---QGHSRDIYHTK------------RMQHVTHTVWSLDNKFVISASDE-MNLRVWKAHASEKLGYVNNKQRQA  122 (197)
Q Consensus        59 ~i~d~~---~~~~~~~~~~~------------~~~~v~~v~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~  122 (197)
                      ..||+.   +++.+......            .......++..++|+..++++.. +.|...+... +....+...... 
T Consensus       103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~-  180 (334)
T 2p9w_A          103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGN-  180 (334)
T ss_dssp             EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCC-
T ss_pred             EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCC-
Confidence            999999   77765544211            11347899999999998888877 7777777653 323222111100 


Q ss_pred             cccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074        123 LDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus       123 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                       .......+.++++|+|+.|+... .+.+..+++.
T Consensus       181 -~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          181 -GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             -SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             -cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence             00011146889999998777543 3345555554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.73  E-value=0.0044  Score=45.60  Aligned_cols=104  Identities=4%  Similarity=-0.055  Sum_probs=62.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++-...+.|+.+++.. ......+.........+++.+.+..| ++-...+.|.+.++..... ..+.........
T Consensus        85 ~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~  162 (349)
T 3v64_C           85 ELVFWSDVTLDRILRANLNG-SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPR  162 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEE
T ss_pred             cEEEEEeccCCceEEEecCC-CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcc
Confidence            45555655666777777764 22222222223445788888765555 4555667899999875432 222222335678


Q ss_pred             EEEEccCCCEEEEE-eCC-CcEEEEEcCC
Q psy18074         82 HTVWSLDNKFVISA-SDE-MNLRVWKAHA  108 (197)
Q Consensus        82 ~v~~~~~~~~l~~~-~~d-g~i~vwd~~~  108 (197)
                      .++++|.+..|+.. ... +.|...++..
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            99999976666544 334 6788888763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.73  E-value=0.00051  Score=54.35  Aligned_cols=62  Identities=11%  Similarity=0.010  Sum_probs=43.9

Q ss_pred             CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         55 DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        55 d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      .|.|.-||+.+++.+.....+  .....-.+...+..++.++.|+.++.||..+|+.+..+...
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            467888999999877665322  12221112335677778999999999999999999877543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.72  E-value=0.002  Score=46.57  Aligned_cols=134  Identities=9%  Similarity=-0.031  Sum_probs=74.8

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCCCcc--cceeecccccceeEEEEccCC
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAHQGHS--RDIYHTKRMQHVTHTVWSLDN   89 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~   89 (197)
                      +.|..||... +. ...+.........++++|++..|+.+ +..+.|+.|++.....  ...+.. ..+ ...+++.++|
T Consensus       165 g~v~~~d~~~-~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G  240 (322)
T 2fp8_A          165 GRLIKYDPST-KE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADG  240 (322)
T ss_dssp             EEEEEEETTT-TE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTS
T ss_pred             ceEEEEeCCC-CE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCC
Confidence            5566677653 22 22221112345679999999866655 5568899999875321  112211 113 7889999999


Q ss_pred             CEEEEEeC----------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee-cCcceEEeecc
Q psy18074         90 KFVISASD----------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH-RQVPRHIYNAQ  156 (197)
Q Consensus        90 ~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~i~~~~  156 (197)
                      +++++...          .+.|..+|.. ++.+..+.......+    ..+..+++ .++++.++. ....+..+++.
T Consensus       241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~----~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          241 HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAG----EHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTT----SCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCcc----ccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            87766543          4668888864 665555543321101    12344555 355555443 34466667654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.67  E-value=0.0046  Score=46.16  Aligned_cols=104  Identities=4%  Similarity=-0.038  Sum_probs=62.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++-...+.|+.+++.. ......+.........+++++.+..|+ +-...+.|.+.++..... ..+.........
T Consensus       128 ~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~  205 (386)
T 3v65_B          128 ELVFWSDVTLDRILRANLNG-SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPR  205 (386)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEE
T ss_pred             CeEEEEeCCCCcEEEEecCC-CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCc
Confidence            45566666667777777764 222222222233456788887655554 445567888888764432 222222335678


Q ss_pred             EEEEccCCCEEEEEe-CC-CcEEEEEcCC
Q psy18074         82 HTVWSLDNKFVISAS-DE-MNLRVWKAHA  108 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~-~d-g~i~vwd~~~  108 (197)
                      .++++|.+..|+... .. +.|..+++..
T Consensus       206 giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             EEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            999999777666544 33 6788888764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.65  E-value=0.0078  Score=43.69  Aligned_cols=104  Identities=5%  Similarity=0.017  Sum_probs=62.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++.+-...+.|+.+++.........+........++++.+.+..| ++-...+.|.++++..... ..+.........
T Consensus        47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~  125 (318)
T 3sov_A           47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPR  125 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEE
T ss_pred             CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCcc
Confidence            45566666666777777764211122222223456678888755544 4545677899999875432 222223335678


Q ss_pred             EEEEccCCCEEEEEe--CCCcEEEEEcC
Q psy18074         82 HTVWSLDNKFVISAS--DEMNLRVWKAH  107 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~--~dg~i~vwd~~  107 (197)
                      .++++|.+..|+...  ..+.|...++.
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            999999766666554  25678888775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=0.0033  Score=48.46  Aligned_cols=101  Identities=7%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC----CCCeEEEEE-------CCCCCEEEEEeCCC-------cEEEEECC
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM----TSAVTSVDY-------SPTGREFVAGGYDK-------SLRLYLAH   64 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~-------sp~~~~l~~~~~d~-------~v~i~d~~   64 (197)
                      ++++++....+.|++.|+..  ..+..+...    ......++|       ++++..|+.+...+       .|.+++..
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~  229 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN  229 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred             CEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence            45666655556688888774  233333221    235889999       99999776665443       26666644


Q ss_pred             C-Cccc-----ceeecccccceeEEEEccCC-CEEEEEeCCCcEEEEEcC
Q psy18074         65 Q-GHSR-----DIYHTKRMQHVTHTVWSLDN-KFVISASDEMNLRVWKAH  107 (197)
Q Consensus        65 ~-~~~~-----~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~vwd~~  107 (197)
                      . +...     ..+..  -.....++++|++ .++++-..++.|..+|+.
T Consensus       230 ~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          230 ADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             TTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            3 2322     12211  1345678899954 445566677889999987

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.56  E-value=0.01  Score=44.68  Aligned_cols=128  Identities=10%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             CcEEEEEccCCCCceeecccC----CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccc------------ceeecc-
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDM----TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSR------------DIYHTK-   75 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~------------~~~~~~-   75 (197)
                      +.||..++... ..-+.+...    ...+..+..||+|.+|+..+ +..|.+..+..+...            ..+..+ 
T Consensus        41 n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           41 NIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            56676676632 223333221    23578899999999998876 456888888733211            012111 


Q ss_pred             ----cccceeEEEEccC---CCEEEEEeCCCcEEEEEcCCCc--eeeeecccccc-ccccccccceecccCcccceee
Q psy18074         76 ----RMQHVTHTVWSLD---NKFVISASDEMNLRVWKAHASE--KLGYVNNKQRQ-ALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        76 ----~~~~v~~v~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                          ....|..+.|+|-   +..|++-..|+.|++||+....  +. .+...... .+......+.+++|.+++-.|.
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLY  195 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLY  195 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEE
Confidence                2467999999994   6789999999999999998522  22 23211110 1111123477888988775443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.55  E-value=0.011  Score=42.70  Aligned_cols=104  Identities=6%  Similarity=-0.053  Sum_probs=62.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCC---CCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL---NSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++++-..++.|+.+++...   ......+........++++++.+..|+ +-...+.|.++++......... .....
T Consensus        42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~  120 (316)
T 1ijq_A           42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGS  120 (316)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-ECTTC
T ss_pred             CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-ECCCC
Confidence            456667666778888887631   111222222224557888887555554 4456788999998754332222 22235


Q ss_pred             ceeEEEEccCCCEEEEEeC-C-CcEEEEEcC
Q psy18074         79 HVTHTVWSLDNKFVISASD-E-MNLRVWKAH  107 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~-d-g~i~vwd~~  107 (197)
                      ....++++|.+..++.+.. . +.|...++.
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            6789999997766654443 2 678888775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.53  E-value=0.0092  Score=47.73  Aligned_cols=109  Identities=14%  Similarity=0.026  Sum_probs=68.2

Q ss_pred             CccEEEEEcCCC-----------cEEEEEccCCC-Cceeecc-cCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDF-----------NLYSYDIRQLN-SPLNVHK-DMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~-----------~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~   67 (197)
                      ++++++.|+.+.           .+.+||+.+.. ..+..+. .+.....++++.+++..+++|+. +..+.+||..++.
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            678888886543           47889987522 1222222 22334445777889999999884 4589999988764


Q ss_pred             ccceeecccccceeEEEEccCCCEEEEEe-CC-----CcEEEEEcCCCc
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLDNKFVISAS-DE-----MNLRVWKAHASE  110 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~  110 (197)
                      -...........-.+++..++++.++.|+ .+     ..+.+||..+..
T Consensus       277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            32221111112223455667899988887 34     468999998654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.44  E-value=0.021  Score=42.88  Aligned_cols=134  Identities=6%  Similarity=-0.054  Sum_probs=74.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCC---CceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLN---SPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++++-...+.|+.+++....   .....+.........+++.+.+..| ++-...+.|.+.++........+ .....
T Consensus       124 ~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~  202 (400)
T 3p5b_L          124 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGS  202 (400)
T ss_dssp             TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-ECSSC
T ss_pred             CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-eCCCC
Confidence            4555555556667777765311   1222233234567889998855544 45556778998888755433332 22235


Q ss_pred             ceeEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         79 HVTHTVWSLDNKFVISASD--EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      .+..++++|.+.+|+....  .+.|...++.............        .....+++++++..|...
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l--------~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI--------QWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSC--------SCEEEEEEETTTTEEEEE
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCC--------CceEEEEEEeCCCEEEEE
Confidence            6889999997666665442  3678888876433222222111        113567777666555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.39  E-value=0.0035  Score=50.31  Aligned_cols=114  Identities=9%  Similarity=0.021  Sum_probs=71.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCC-CCeEEEEECC--CCCEEEEEeC------CCcEEEEECCCCcccceee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-SAVTSVDYSP--TGREFVAGGY------DKSLRLYLAHQGHSRDIYH   73 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp--~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~   73 (197)
                      +..++.++.|+.|+.+|..+ ++.+-.+.... .....+..+|  .+..++++..      ++.|+.+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            34567778899999999987 44444433211 0001111112  2344555433      5899999999999877653


Q ss_pred             ccc--c----------------------------cceeEEEEccCCCEEEEEeCCC-------------------cEEEE
Q psy18074         74 TKR--M----------------------------QHVTHTVWSLDNKFVISASDEM-------------------NLRVW  104 (197)
Q Consensus        74 ~~~--~----------------------------~~v~~v~~~~~~~~l~~~~~dg-------------------~i~vw  104 (197)
                      ...  .                            .....++++|+...++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210  0                            0112468888888888777665                   39999


Q ss_pred             EcCCCceeeeecc
Q psy18074        105 KAHASEKLGYVNN  117 (197)
Q Consensus       105 d~~~~~~~~~~~~  117 (197)
                      |..+|+.+..+..
T Consensus       276 D~~tG~~~W~~~~  288 (668)
T 1kv9_A          276 RPDTGKLAWHYQV  288 (668)
T ss_dssp             CTTTCCEEEEEES
T ss_pred             cCCCCceeeEeec
Confidence            9999999887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.38  E-value=0.022  Score=41.89  Aligned_cols=106  Identities=3%  Similarity=-0.083  Sum_probs=66.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCC-CcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYD-KSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d-~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +++++++-...+.|.++++.. ......+.........++++|.+..|+. -... +.|..+++..... ..+.......
T Consensus       127 ~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~  204 (349)
T 3v64_C          127 HDKLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFW  204 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSC
T ss_pred             CCeEEEEcCCCCeEEEEcCCC-CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCC
Confidence            355666666677888888763 2222223333456789999996665554 4444 7888888774332 2221222356


Q ss_pred             eeEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q psy18074         80 VTHTVWSLDNKFVISA-SDEMNLRVWKAHAS  109 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~  109 (197)
                      .+.++++|++..|+.+ ...+.|..+|+...
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            7899999877766654 45678999998643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.38  E-value=0.024  Score=42.28  Aligned_cols=105  Identities=3%  Similarity=-0.076  Sum_probs=65.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YD-KSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d-~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++++++-...+.|.++++.. ......+.........++++|.+..|+.+. .. +.|+.+++..... ..+........
T Consensus       171 g~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~P  248 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWP  248 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCE
T ss_pred             CeEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCe
Confidence            45566666666777777653 222222333345678999999776665543 34 6788888764332 22212223467


Q ss_pred             eEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q psy18074         81 THTVWSLDNKFVISA-SDEMNLRVWKAHAS  109 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~  109 (197)
                      +.++|+|++..|+.+ ...+.|..+|+...
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            899999877766654 45678999988643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.36  E-value=0.0068  Score=43.52  Aligned_cols=127  Identities=8%  Similarity=-0.006  Sum_probs=73.9

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCcee---------ecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCC-Ccc--cc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLN---------VHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAHQ-GHS--RD   70 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~---------~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~~-~~~--~~   70 (197)
                      .++++-..++.|+.+|.......+.         ...........+  +|++..|+.+ ...+.|+.|++.. +..  ..
T Consensus       129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~  206 (306)
T 2p4o_A          129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE  206 (306)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred             cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccE
Confidence            3455555678888888753110111         001111234555  7788766554 4567899999875 332  11


Q ss_pred             eeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--eeccccccccccccccceecccC---cccceee
Q psy18074         71 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG--YVNNKQRQALDYSESLKQKYAHH---PQIRRIA  143 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~  143 (197)
                      .+...  .....++++++|+++++....+.|.++|.. ++...  .+...        .....+++|.   |++..|.
T Consensus       207 ~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~--------~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          207 IFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG--------VIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             EEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT--------CTTEEEEEECCSTTTTTEEE
T ss_pred             EEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc--------cCCceEEEEecccCCCCEEE
Confidence            12111  346778999999887777778889999975 54322  12111        0124788888   7765554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.30  E-value=0.03  Score=45.83  Aligned_cols=106  Identities=6%  Similarity=-0.088  Sum_probs=63.7

Q ss_pred             ccEEEEEcCCCcEEEEEccCC---CCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL---NSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++++-...+.|+.+++...   ......+.........|++.+.+..|+ +-...+.|.+.++..... ..+......
T Consensus       436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~  514 (791)
T 3m0c_C          436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGS  514 (791)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTC
T ss_pred             CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCC
Confidence            455666666666777776531   122233332345567889988776555 445678899999875443 333233335


Q ss_pred             ceeEEEEccCCCEEEEEeC--CCcEEEEEcCCC
Q psy18074         79 HVTHTVWSLDNKFVISASD--EMNLRVWKAHAS  109 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~~~  109 (197)
                      ....|+++|.+.+|+....  .+.|...++...
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            6889999998666665542  267888887643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.27  E-value=0.029  Score=41.37  Aligned_cols=135  Identities=7%  Similarity=0.036  Sum_probs=72.1

Q ss_pred             CCCcEEEEEccCCCCceeec--cc-----CCCCeEEEEECC--CCC-EEEEEe-C--CCcEEEEECCCC--ccc--ceee
Q psy18074         11 EDFNLYSYDIRQLNSPLNVH--KD-----MTSAVTSVDYSP--TGR-EFVAGG-Y--DKSLRLYLAHQG--HSR--DIYH   73 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~--~~-----~~~~v~~~~~sp--~~~-~l~~~~-~--d~~v~i~d~~~~--~~~--~~~~   73 (197)
                      .+|.|.++|+.+.......+  .+     .......+.+.+  +++ +|+.+. .  +..+.+|++...  ...  ..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987422222222  22     123567777755  454 444443 2  456777776543  211  1121


Q ss_pred             cccccceeEEEEccCCCEEEEEeC-----------------CCcEEEEEcCCCceeeeeccccccccccccccceecccC
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASD-----------------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH  136 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  136 (197)
                      ...-...+.+.+.++|++.++...                 .|.+.-+|.  ++. ..+...        -...+.++|+
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~--------l~~pNGia~s  229 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEG--------FDFANGINIS  229 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEE--------ESSEEEEEEC
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecC--------CcccCcceEC
Confidence            122356889999999998776541                 233444443  321 111111        1124789999


Q ss_pred             cccceeeeec--CcceEEeecc
Q psy18074        137 PQIRRIARHR--QVPRHIYNAQ  156 (197)
Q Consensus       137 ~~~~~l~~~~--~~~~~i~~~~  156 (197)
                      ||++.+....  ...+..|+..
T Consensus       230 pDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          230 PDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCeEEEEEEC
Confidence            9998776443  3355666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.21  E-value=0.036  Score=40.76  Aligned_cols=143  Identities=13%  Similarity=0.151  Sum_probs=85.3

Q ss_pred             EEEEcC--CCcEEEEEccCCCCceeeccc------CC-CCeEEEEE--CCC-CC-EEEEEeCCCcEEEEECCC-------
Q psy18074          6 FTAANE--DFNLYSYDIRQLNSPLNVHKD------MT-SAVTSVDY--SPT-GR-EFVAGGYDKSLRLYLAHQ-------   65 (197)
Q Consensus         6 l~~~~~--d~~i~i~d~~~~~~~~~~~~~------~~-~~v~~~~~--sp~-~~-~l~~~~~d~~v~i~d~~~-------   65 (197)
                      +++...  +++|.+|++.....++..+..      .. ..+..+++  +|. +. ++++...+|.+..|++..       
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            344444  578999987532334444421      11 45677787  775 44 567778889999998832       


Q ss_pred             CcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcC-----CCceeeeeccccccccccccccceeccc--Ccc
Q psy18074         66 GHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAH-----ASEKLGYVNNKQRQALDYSESLKQKYAH--HPQ  138 (197)
Q Consensus        66 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~  138 (197)
                      .+.++.+..+  +.+-.+...+....|+.+-.+.-|..++..     +++.+..+....   +   ...+..+++  .++
T Consensus       170 ~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~---l---~aDvEGLai~~~~~  241 (355)
T 3amr_A          170 GKKVRAFKMN--SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH---L---TRDIEGLTIYYAAD  241 (355)
T ss_dssp             EEEEEEEECS--SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS---B---CSCEEEEEEEECGG
T ss_pred             ceEEEEecCC--CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc---c---ccCcceEEEEecCC
Confidence            2444555444  577888888888888888888666666644     233333332110   0   112466666  455


Q ss_pred             cc--eeeeecC-cceEEeecc
Q psy18074        139 IR--RIARHRQ-VPRHIYNAQ  156 (197)
Q Consensus       139 ~~--~l~~~~~-~~~~i~~~~  156 (197)
                      ++  +++++.. +...+|+..
T Consensus       242 g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          242 GKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             GCEEEEEEEGGGTEEEEEESS
T ss_pred             CCEEEEEEcCCCCEEEEEECC
Confidence            44  4555533 477899875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.20  E-value=0.063  Score=43.87  Aligned_cols=142  Identities=10%  Similarity=0.001  Sum_probs=85.5

Q ss_pred             EEEcCCCcEEEEEccCCCCceeeccc-------CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-----
Q psy18074          7 TAANEDFNLYSYDIRQLNSPLNVHKD-------MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-----   74 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----   74 (197)
                      ..|+.++-|..|+... .. ...+..       ....|.++...++|.. ..|+.++-|..|+..++........     
T Consensus       324 Wigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          324 WLGTYFGGLNYYHPIR-NR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             EEEESSSCEEEECGGG-GS-SEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred             EEEECCCCeEEeCCCc-cc-ceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence            3455556688887653 22 222211       2346999999887774 4567776799999887654332211     


Q ss_pred             --ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEE
Q psy18074         75 --KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHI  152 (197)
Q Consensus        75 --~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i  152 (197)
                        -....|.+++..++|+.|..|+.++-+..||..+++... +......   .....|.++...++|.+.+... ..+.+
T Consensus       401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~---l~~~~v~~i~~d~~g~lwigt~-~Gl~~  475 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQ---LVNENVYAILPDGEGNLWLGTL-SALVR  475 (795)
T ss_dssp             -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSC---CSCSCEEEEEECSSSCEEEEES-SCEEE
T ss_pred             cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCC---cCCCeeEEEEECCCCCEEEEec-CceeE
Confidence              113578999988888845566766679999988765433 2211110   1123467777777777665544 55666


Q ss_pred             eecc
Q psy18074        153 YNAQ  156 (197)
Q Consensus       153 ~~~~  156 (197)
                      |+..
T Consensus       476 ~~~~  479 (795)
T 4a2l_A          476 FNPE  479 (795)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            6643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.19  E-value=0.035  Score=40.28  Aligned_cols=105  Identities=5%  Similarity=-0.078  Sum_probs=66.5

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG--YDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      +++++++-...+.|.++++.. ......+.........++++|.+..|+.+.  ..+.|..+++.... ...+....-..
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~  167 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYW  167 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSC
T ss_pred             CCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCC
Confidence            355666666667788888763 222222223345678999999766665554  35788888876432 22221222356


Q ss_pred             eeEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q psy18074         80 VTHTVWSLDNKFVISA-SDEMNLRVWKAHA  108 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~  108 (197)
                      .+.++++|++..|+.+ +..+.|..+|+..
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            7899999977776655 4567899999864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.19  E-value=0.057  Score=44.11  Aligned_cols=144  Identities=8%  Similarity=0.016  Sum_probs=86.7

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecc---------cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHK---------DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--   74 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--   74 (197)
                      |..|+.++-|..||..+ +. ...+.         .....|.++...+++..|..|+.++-|..||..++........  
T Consensus       370 lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~  447 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS  447 (795)
T ss_dssp             EEEEESSSCEEEECTTT-CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred             EEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence            33455666688888764 22 22221         1135689999888888566677777799999987764332210  


Q ss_pred             -ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEe
Q psy18074         75 -KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus        75 -~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                       .....|.++...++|++.+... + -+..||..+++...........  ......|.++...++|+..+... ..+..|
T Consensus       448 ~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~  522 (795)
T 4a2l_A          448 QLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGT--PVVSKQITTLFRDSHKRLWIGGE-EGLSVF  522 (795)
T ss_dssp             CCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCC--BCCCCCEEEEEECTTCCEEEEES-SCEEEE
T ss_pred             CcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEcccccccc--ccCCceEEEEEECCCCCEEEEeC-CceEEE
Confidence             1235789999888888766543 4 4888998766543221110000  01123467787888887666554 556666


Q ss_pred             ecc
Q psy18074        154 NAQ  156 (197)
Q Consensus       154 ~~~  156 (197)
                      +..
T Consensus       523 ~~~  525 (795)
T 4a2l_A          523 KQE  525 (795)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.12  E-value=0.041  Score=39.76  Aligned_cols=103  Identities=7%  Similarity=-0.059  Sum_probs=65.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceee-cccCCCCeEEEEECCCCCEEEEEeC-C-CcEEEEECCCCcccceeecccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNV-HKDMTSAVTSVDYSPTGREFVAGGY-D-KSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~-d-~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++++++-...+.|.++++..  ..... +.........++++|.+..|+.+.. . +.|..+++.. .....+....-..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~  165 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQW  165 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSC
T ss_pred             CeEEEEECCCCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCC
Confidence            45666666677888888763  22222 2323456789999997666655443 3 6788888763 3322221222356


Q ss_pred             eeEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q psy18074         80 VTHTVWSLDNKFVISA-SDEMNLRVWKAHA  108 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~  108 (197)
                      ...++++|++..|+.+ ...+.|..+|+..
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            8899999987777655 4567899999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.02  E-value=0.006  Score=49.25  Aligned_cols=103  Identities=7%  Similarity=-0.088  Sum_probs=62.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeec-ccCCCCeEEEEECCCCCEEEEEe-C-CCcEEEEECCCCcccceeecccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVH-KDMTSAVTSVDYSPTGREFVAGG-Y-DKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~-d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++++++-...+.|.++++..  .....+ .........++++|.+..|+.+. . .+.|..+++.... ...+.......
T Consensus       465 g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~  541 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQW  541 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSS
T ss_pred             CcEEEEeccCCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCC
Confidence            45566655667788888763  223332 22234567889999765555443 2 2678877775332 22221222245


Q ss_pred             eeEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q psy18074         80 VTHTVWSLDNKFVI-SASDEMNLRVWKAHA  108 (197)
Q Consensus        80 v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~  108 (197)
                      .+.|+|+|++..|+ +-...+.|.++++..
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            78899999866555 445567899999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.01  E-value=0.068  Score=40.54  Aligned_cols=107  Identities=13%  Similarity=0.107  Sum_probs=64.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc-eeecc-cCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECC--CCccc--ceeec
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP-LNVHK-DMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAH--QGHSR--DIYHT   74 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~--~~~~~--~~~~~   74 (197)
                      +|.++++-..++.|+.+|... +.. ...+. +.......++|+|++..|+. -...+.|+.++..  ++...  ..+..
T Consensus       239 ~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag  317 (433)
T 4hw6_A          239 NGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG  317 (433)
T ss_dssp             TCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred             CCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence            566777766777888888864 222 11111 11223357999999995554 4556789988765  23221  11100


Q ss_pred             --c------------cccceeEEEE---------ccCCCEEEEEeCCCcEEEEEcCCCc
Q psy18074         75 --K------------RMQHVTHTVW---------SLDNKFVISASDEMNLRVWKAHASE  110 (197)
Q Consensus        75 --~------------~~~~v~~v~~---------~~~~~~l~~~~~dg~i~vwd~~~~~  110 (197)
                        +            .-.....+++         .++|.+.++-...+.|+.++. +|.
T Consensus       318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence              0            1134677899         677777777667788999885 453

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.99  E-value=0.048  Score=42.92  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=35.9

Q ss_pred             cEEEEEccCCCCceeeccc--C--------CCCeEEEEECCCCC---EEEEEeCCCcEEEEECCCCccccee
Q psy18074         14 NLYSYDIRQLNSPLNVHKD--M--------TSAVTSVDYSPTGR---EFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~--~--------~~~v~~~~~sp~~~---~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      .|..+|..+ ++..-.++.  |        ..++. +...++|+   .++.++.+|.++++|..+|+.+...
T Consensus       273 ~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          273 TIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEecCC-CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            488889887 444444321  1        12222 22224664   5677888999999999999876554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.96  E-value=0.031  Score=42.32  Aligned_cols=73  Identities=5%  Similarity=0.073  Sum_probs=51.3

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcC
Q psy18074         35 SAVTSVDYSP-TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAH  107 (197)
Q Consensus        35 ~~v~~~~~sp-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~  107 (197)
                      ....+++++| ++..+++-..++.|+.++...+................++|+|+|++|+ +-...+.|..++..
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            3457788999 6676666667789999999876542222222224578999999999655 44567889998765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.93  E-value=0.0044  Score=50.04  Aligned_cols=104  Identities=6%  Similarity=-0.055  Sum_probs=57.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCC---CCceeecccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQL---NSPLNVHKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      +.++++-...+.|+.+++...   ......+.........+++.+.+..| ++-...+.|.++++........+ .....
T Consensus       418 ~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~  496 (699)
T 1n7d_A          418 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGS  496 (699)
T ss_dssp             TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSC
T ss_pred             CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCC
Confidence            345555555677888887631   11112221112345678888655444 44455678999998755433222 22224


Q ss_pred             ceeEEEEccCCCEEEEEeC--CCcEEEEEcC
Q psy18074         79 HVTHTVWSLDNKFVISASD--EMNLRVWKAH  107 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~--dg~i~vwd~~  107 (197)
                      ....++++|.+.+|+....  .+.|.++++.
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence            5678899997665554432  2677777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.88  E-value=0.14  Score=42.00  Aligned_cols=105  Identities=7%  Similarity=-0.090  Sum_probs=68.1

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeec-ccCCCCeEEEEECCCCCEEEEEe-C-CCcEEEEECCCCcccceeecccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVH-KDMTSAVTSVDYSPTGREFVAGG-Y-DKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~-d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++++++-...+.|.+.++..  .....+ ........+|+++|.+..|+.+. . .+.|...++..... ..+.......
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG--~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~  559 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW  559 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSC
T ss_pred             CcEEEEecCCCeEEEEeCCC--CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCC
Confidence            46677777778888888873  333333 23345688999999766665544 2 36788888874433 3332333357


Q ss_pred             eeEEEEccCCCEEEEE-eCCCcEEEEEcCCCc
Q psy18074         80 VTHTVWSLDNKFVISA-SDEMNLRVWKAHASE  110 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~  110 (197)
                      ...|++++.+..|+.+ ...+.|...++....
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            8899999877777655 445678888886433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.84  E-value=0.064  Score=40.50  Aligned_cols=103  Identities=11%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-Cc----------eeeccc------CCCCeEEEEECCC---CCEEEEEeCCCcEEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SP----------LNVHKD------MTSAVTSVDYSPT---GREFVAGGYDKSLRLY   61 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~----------~~~~~~------~~~~v~~~~~sp~---~~~l~~~~~d~~v~i~   61 (197)
                      +|.++|..+ +..|.+..+.... ..          .+.+.-      ...+|..+.|+|-   +..|++-..|+.|++|
T Consensus        76 sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~y  154 (452)
T 3pbp_A           76 SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMF  154 (452)
T ss_dssp             TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEE
T ss_pred             CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEE
Confidence            678888875 4578888876211 00          111211      2467999999995   5689999999999999


Q ss_pred             ECCCCcccc-ee--------ecccccceeEEEEccCCCEEEEEe--CCCcEEEEE
Q psy18074         62 LAHQGHSRD-IY--------HTKRMQHVTHTVWSLDNKFVISAS--DEMNLRVWK  105 (197)
Q Consensus        62 d~~~~~~~~-~~--------~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~vwd  105 (197)
                      |+....... .+        ...+...|.+++|.+++-.|...+  ..|.|+-..
T Consensus       155 Dl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          155 DILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            998632111 11        011225688999988776666644  667766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.81  E-value=0.14  Score=40.83  Aligned_cols=104  Identities=5%  Similarity=-0.017  Sum_probs=60.4

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEE-EeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA-GGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +.++++-...+.|..+++.........+.........+++++.+..|+. -...+.|.+.++..... ..+....-....
T Consensus        52 ~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~  130 (619)
T 3s94_A           52 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPR  130 (619)
T ss_dssp             TEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCC
T ss_pred             CEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCc
Confidence            4455555555667777765321112233332356889999986665554 45678899999875433 233223335678


Q ss_pred             EEEEccCCCEEEEEeC--CCcEEEEEcC
Q psy18074         82 HTVWSLDNKFVISASD--EMNLRVWKAH  107 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~--dg~i~vwd~~  107 (197)
                      .+++.|.+.+|+....  .+.|...++.
T Consensus       131 ~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A          131 AIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             CEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            9999997666655443  3566666655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.79  E-value=0.058  Score=39.29  Aligned_cols=96  Identities=9%  Similarity=0.089  Sum_probs=65.2

Q ss_pred             CCcEEEEEcc---CCCCceeecc--c-----------CCCCeEEEEECCCCCEEEEEeCC-CcEEEEECCCCcccceeec
Q psy18074         12 DFNLYSYDIR---QLNSPLNVHK--D-----------MTSAVTSVDYSPTGREFVAGGYD-KSLRLYLAHQGHSRDIYHT   74 (197)
Q Consensus        12 d~~i~i~d~~---~~~~~~~~~~--~-----------~~~~v~~~~~sp~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~   74 (197)
                      +..|..||+.   + ++.+....  .           -......++..++|+..++++.. +.|..++............
T Consensus        99 ~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~  177 (334)
T 2p9w_A           99 ASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWE  177 (334)
T ss_dssp             CCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEEC
T ss_pred             CCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeec
Confidence            5678899988   5 33332221  1           12358899999999999988887 8777777664322211111


Q ss_pred             ----ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         75 ----KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        75 ----~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                          ......+.++++|+|+.|+.....|.+..+|+.+
T Consensus       178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence                1123467999999999888776699999999874

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.73  E-value=0.063  Score=39.53  Aligned_cols=92  Identities=4%  Similarity=-0.058  Sum_probs=51.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC-ceeec---ccCCCCeEEEEECCC---CCEEEEEeC----C----CcEEEEECCCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS-PLNVH---KDMTSAVTSVDYSPT---GREFVAGGY----D----KSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~---~~~~~~v~~~~~sp~---~~~l~~~~~----d----~~v~i~d~~~~   66 (197)
                      ||.++++- .++.|+++|..  +. .+..+   .........++++|+   +..|+.+..    +    ..|..|+...+
T Consensus        39 dG~l~V~e-~~g~I~~~d~~--G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~  115 (354)
T 3a9g_A           39 GGRYLVTE-RPGRLVLISPS--GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS  115 (354)
T ss_dssp             TTEEEEEE-TTTEEEEECSS--CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred             CCeEEEEe-CCCEEEEEeCC--CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC
Confidence            56656554 45888888743  22 22211   122356889999997   455544332    2    56777777644


Q ss_pred             --c---ccce---eecccccceeEEEEccCCCEEEEEe
Q psy18074         67 --H---SRDI---YHTKRMQHVTHTVWSLDNKFVISAS   96 (197)
Q Consensus        67 --~---~~~~---~~~~~~~~v~~v~~~~~~~~l~~~~   96 (197)
                        .   ....   +..........++|.|||.+.++.+
T Consensus       116 ~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          116 TFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             SCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             CcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence              1   1111   1111111346799999998766643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.72  E-value=0.09  Score=38.79  Aligned_cols=101  Identities=12%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             cEEEEEcC--CCcEEEEEccCCCCc---eeecccC-CCCeEEEEECCCCCEEEEEe-----------------CCCcEEE
Q psy18074          4 FVFTAANE--DFNLYSYDIRQLNSP---LNVHKDM-TSAVTSVDYSPTGREFVAGG-----------------YDKSLRL   60 (197)
Q Consensus         4 ~~l~~~~~--d~~i~i~d~~~~~~~---~~~~~~~-~~~v~~~~~sp~~~~l~~~~-----------------~d~~v~i   60 (197)
                      .++++-..  +..|.+|++...+..   +..+.+. ......+.+.++|..+++..                 ..|.|+-
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            35555433  467888887643322   2223221 24578999999998777643                 1245555


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA-SDEMNLRVWKAHA  108 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~  108 (197)
                      ++.  ++.....  ..-...+.++|+||++.++.+ +..+.|..|++..
T Consensus       208 ~d~--~~~~~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          208 YSP--NDVRVVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             ECT--TCCEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEC--CeEEEee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            554  3322222  223567999999999988755 4578899999863

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.72  E-value=0.008  Score=41.19  Aligned_cols=107  Identities=10%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccc--------eeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQH--------VTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--------v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      ..+..++|+|+|.+.+.  .+|.++-.+..++.....+..  ...        -.++.|.|+|.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s--~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR--AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc--ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36779999998886666  678787777654332211111  122        378899999988777  4588887775


Q ss_pred             CCCceeeeeccccccccccccccceecccCcccceeeeecCcc
Q psy18074        107 HASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP  149 (197)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  149 (197)
                      .+.....-+ .....+-......+..+.+.|+|.+-+.. +..
T Consensus       115 P~~~~~~Wl-~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A          115 PQSDTDNWI-ARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CCSTTCCHH-HHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             CcCCCCcee-ccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence            432221111 11111101111235788999999988877 443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.71  E-value=0.026  Score=45.12  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEECCCCcccce--eecccccceeEEEEccCCCEEEEEeC-CCcEEE
Q psy18074         39 SVDYSP-TGREFVAGGYDK-----------SLRLYLAHQGHSRDI--YHTKRMQHVTHTVWSLDNKFVISASD-EMNLRV  103 (197)
Q Consensus        39 ~~~~sp-~~~~l~~~~~d~-----------~v~i~d~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~i~v  103 (197)
                      .+++.| ++..++.|+.+.           .+.+||..++.-...  +...+.....++++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556666 777788876542           588899988764332  22223334456778889999998874 557999


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-------cceEEeecch
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-------VPRHIYNAQA  157 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~~~i~~~~~  157 (197)
                      ||..+.+=..........       .-...+..+++++++.|..       ..+.+|+...
T Consensus       270 yd~~t~~W~~~~~~~~~R-------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVAR-------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEGGGTEEEECCCCSSCC-------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCcCCceeECCCCCccc-------cccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            998865422211111110       0123445568887776552       3467777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.67  E-value=0.13  Score=38.61  Aligned_cols=106  Identities=6%  Similarity=-0.061  Sum_probs=66.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG--YDKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      .++++++-...+.|.+.++.. ......+.........++++|.+..|+...  ..+.|...++......... ...-..
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-~~~l~~  247 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TENIQW  247 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-CSSCSC
T ss_pred             CCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-ECCCCc
Confidence            345666666667777777763 222222333345578999999766665544  2468888888743332222 222356


Q ss_pred             eeEEEEccCCCEEEEEe-CCCcEEEEEcCCC
Q psy18074         80 VTHTVWSLDNKFVISAS-DEMNLRVWKAHAS  109 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~  109 (197)
                      .+.+++++++..|+.+. ..+.|..+|+...
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            89999999877777554 4678999998643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.55  E-value=0.14  Score=37.67  Aligned_cols=111  Identities=9%  Similarity=0.166  Sum_probs=74.1

Q ss_pred             EEEEEcCCCcEEEEEccCC------CCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC-----Ccccceee
Q psy18074          5 VFTAANEDFNLYSYDIRQL------NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ-----GHSRDIYH   73 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~   73 (197)
                      ++++...+|.+..|++...      .+.++.+.. .+.+..+...+....|+.+-.+..|..++...     +..+....
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            5666677799999888421      244555543 56788999998888999998887788888652     33333322


Q ss_pred             cccc-cceeEEEE--ccCCC-EEEEEe-CCCcEEEEEcC-CCceeeeec
Q psy18074         74 TKRM-QHVTHTVW--SLDNK-FVISAS-DEMNLRVWKAH-ASEKLGYVN  116 (197)
Q Consensus        74 ~~~~-~~v~~v~~--~~~~~-~l~~~~-~dg~i~vwd~~-~~~~~~~~~  116 (197)
                      .++. ..+..+++  .++++ ||+.++ .++.+.+||.. +.+.+..+.
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            2222 36788887  55666 666555 56789999996 566666664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.54  E-value=0.037  Score=43.83  Aligned_cols=77  Identities=10%  Similarity=0.033  Sum_probs=52.7

Q ss_pred             EEECCCCCEEEEEeCC----------------CcEEEEECCCCcccceeeccccc--------ceeEEEEc-cCC---CE
Q psy18074         40 VDYSPTGREFVAGGYD----------------KSLRLYLAHQGHSRDIYHTKRMQ--------HVTHTVWS-LDN---KF   91 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~--------~v~~v~~~-~~~---~~   91 (197)
                      +++.++...++.+..+                +.|.-+|..+|+....+...+..        ...-+... .+|   ..
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~  325 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKL  325 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEE
Confidence            4555667777776654                37899999999988776443321        11112222 467   46


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         92 VISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        92 l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                      ++.++.+|.++++|..+|+.+....
T Consensus       326 v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          326 LTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCcEEEEEECCCCCEeeccc
Confidence            6778899999999999999887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.52  E-value=0.095  Score=38.50  Aligned_cols=93  Identities=8%  Similarity=0.003  Sum_probs=51.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec---ccCCCCeEEEEECCC---CCEEEEEeC-C-----CcEEEEECCCCcc-
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPT---GREFVAGGY-D-----KSLRLYLAHQGHS-   68 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~---~~~l~~~~~-d-----~~v~i~d~~~~~~-   68 (197)
                      ||.++++- .++.|++++ ......+..+   .........++++|+   +..|+.+.. .     ..|..|+...+.. 
T Consensus        41 dG~l~V~e-~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~  118 (352)
T 2ism_A           41 DGGMLIAE-RPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGV  118 (352)
T ss_dssp             TSCEEEEE-TTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEE
T ss_pred             CCeEEEEe-CCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcC
Confidence            57766654 458888888 3111111111   122456899999998   555554432 2     5677788764321 


Q ss_pred             --cce---ee--cccccceeEEEEccCCCEEEEEe
Q psy18074         69 --RDI---YH--TKRMQHVTHTVWSLDNKFVISAS   96 (197)
Q Consensus        69 --~~~---~~--~~~~~~v~~v~~~~~~~~l~~~~   96 (197)
                        ...   +.  .........++|.|+|.+.++.+
T Consensus       119 ~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          119 LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence              111   11  11111346899999997666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.51  E-value=0.16  Score=41.38  Aligned_cols=141  Identities=11%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             EEEcCCCcEEEEEccCCCCceeec----ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-ccccccee
Q psy18074          7 TAANEDFNLYSYDIRQLNSPLNVH----KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-TKRMQHVT   81 (197)
Q Consensus         7 ~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~v~   81 (197)
                      ..|+.++-|..||..+ .. ...+    ......|.++...+++...+ |+.++-|..++..++....... ......|.
T Consensus       377 Wigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          377 WIGTDGGGINVFENGK-RV-AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVR  453 (781)
T ss_dssp             EEEEBSSCEEEEETTE-EE-EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred             EEEeCCCcEEEEECCC-Ce-EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence            3444445588888753 11 1111    12245789998887776544 6666678899988765433221 11235788


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      ++...++|+..+. +. +-+..+|..+++...........   .....+.++...++|.+.+......+..++.
T Consensus       454 ~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~  522 (781)
T 3v9f_A          454 VFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQ---LLENFVRSIAQDSEGRFWIGTFGGGVGIYTP  522 (781)
T ss_dssp             EEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSS---CSCSCEEEEEECTTCCEEEEESSSCEEEECT
T ss_pred             EEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccc---cccceeEEEEEcCCCCEEEEEcCCCEEEEeC
Confidence            9988888876554 44 45888998766543322111000   0123467777778887666555445555554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.50  E-value=0.091  Score=36.05  Aligned_cols=112  Identities=5%  Similarity=-0.016  Sum_probs=60.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q psy18074         37 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE  110 (197)
Q Consensus        37 v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~  110 (197)
                      ..++.|.|+|.+.++  .||.|+-++-.+...-..+      -...-..+..|.|.|+|.+.+..  ++.++-+...++.
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~  165 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSN  165 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSST
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCC
Confidence            378899999998877  5698988876432211111      01111467999999999887665  7765433222211


Q ss_pred             eeeeeccccccccc-cccccceecccCcccceeeeecCcceEEeecch
Q psy18074        111 KLGYVNNKQRQALD-YSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus       111 ~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      ...-+. . ...+. .....-..+.|.+++...+.. +  -.||....
T Consensus       166 ~~~wl~-~-~~~~g~~g~~~yr~l~f~~~G~l~~v~-~--g~~Y~~~~  208 (236)
T 1tl2_A          166 QDNWLA-R-ATKIGQGGWDTFKFLFFSSVGTLFGVQ-G--GKFYEDYP  208 (236)
T ss_dssp             TCCHHH-H-CEEEESSSGGGEEEEEECTTSCEEEEE-T--TEEEEESC
T ss_pred             Cccccc-c-cceeccCCcceEEEEEECCCCcEEEEe-C--CeEEecCC
Confidence            111000 0 00000 001112446688999888766 2  25555443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.42  E-value=0.088  Score=41.58  Aligned_cols=62  Identities=10%  Similarity=-0.048  Sum_probs=43.2

Q ss_pred             CcEEEEECCCCcccceeeccccc--------ceeEEEEc-cCCC---EEEEEeCCCcEEEEEcCCCceeeeecc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQ--------HVTHTVWS-LDNK---FVISASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~--------~v~~v~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      +.|.-+|..+|+.+..+...+..        ...-+... .+|+   .++.++.+|.++++|..+|+.+.....
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            57999999999988776443211        11112222 4674   677899999999999999998876543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.41  E-value=0.27  Score=39.27  Aligned_cols=106  Identities=7%  Similarity=-0.034  Sum_probs=64.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++-..++.|+.+++.. ......+.........+++.+.+..|+ +-...+.|.+.++..... ..+....-...
T Consensus        48 ~~~lywtD~~~~~I~r~~~~g-~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P  125 (628)
T 4a0p_A           48 DNRIYWTDISLKTISRAFMNG-SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSP  125 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCE
T ss_pred             CCEEEEEECCCCeEEEEECCC-CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCc
Confidence            355666666677788787763 222223322224567888887666555 445567899999875432 22222333567


Q ss_pred             eEEEEccCCCEEEEEe--CCCcEEEEEcCCC
Q psy18074         81 THTVWSLDNKFVISAS--DEMNLRVWKAHAS  109 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~  109 (197)
                      ..++++|...+|+...  ..+.|...++...
T Consensus       126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A          126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             ccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            8999999655666544  2466777776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.011  Score=43.22  Aligned_cols=115  Identities=12%  Similarity=0.045  Sum_probs=69.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccC-CCCeEEEEE--CCCCCEEEEE--eCCCcEEEEECCCCcccceeecccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDM-TSAVTSVDY--SPTGREFVAG--GYDKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~--sp~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      +.++++++.||.|+-+|..+ ++..-.+... ..++....-  .+.+..++.+  +.||.|+.++..+|.....+.....
T Consensus        10 ~~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            34678888999999999887 4544444332 122222110  1112234433  5899999999988854433322110


Q ss_pred             cceeEEEEc-----------cCCCEEEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         78 QHVTHTVWS-----------LDNKFVISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        78 ~~v~~v~~~-----------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      ....-+...           ..+..+++|+.+|.+...|+.+|+.+..+...
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            000001111           13557789999999999999999999887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.22  E-value=0.26  Score=37.60  Aligned_cols=96  Identities=8%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-Cceeeccc------CCCCeEEEEECCC---CCEEEEEeC-------------CCcE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVHKD------MTSAVTSVDYSPT---GREFVAGGY-------------DKSL   58 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~------~~~~v~~~~~sp~---~~~l~~~~~-------------d~~v   58 (197)
                      ||.++++-...+.|++++..... ..+..+..      .++.+..|+|+|+   +..|+.+..             ...|
T Consensus        37 dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v  116 (454)
T 1cru_A           37 DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTII  116 (454)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEE
Confidence            67777776555578888764311 11222221      2456789999995   555544332             2345


Q ss_pred             EEEECCCC--cc--cc-ee---ecccccceeEEEEccCCCEEEEEeC
Q psy18074         59 RLYLAHQG--HS--RD-IY---HTKRMQHVTHTVWSLDNKFVISASD   97 (197)
Q Consensus        59 ~i~d~~~~--~~--~~-~~---~~~~~~~v~~v~~~~~~~~l~~~~~   97 (197)
                      .-|+...+  ..  .. .+   .....-....++|.|||.+.++.++
T Consensus       117 ~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          117 RRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            55655432  11  11 11   1111124688999999987776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.11  E-value=0.26  Score=36.19  Aligned_cols=107  Identities=7%  Similarity=0.033  Sum_probs=59.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ecccccceeEEEEccC---CCEEEEE-eCC-----Cc
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQHVTHTVWSLD---NKFVISA-SDE-----MN  100 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~~~~~v~~v~~~~~---~~~l~~~-~~d-----g~  100 (197)
                      -.....++|.|+|..++ +..++.|++++  ++......    ..........++|+|+   +..|+.+ ...     +.
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            45678999999998554 45669999998  44321111    0112356889999998   5555433 322     56


Q ss_pred             EEEEEcCCCce---eeeeccccccccccccccceecccCcccceeeee
Q psy18074        101 LRVWKAHASEK---LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       101 i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      |..++...+..   ...+......  .........++|.|||.+.++.
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~--~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPAR--PHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCC--TTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCC--CCCCcCCceEEECCCCCEEEEE
Confidence            77888764311   0111100000  0001113578999999765543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.02  E-value=0.49  Score=38.57  Aligned_cols=141  Identities=9%  Similarity=0.011  Sum_probs=80.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecc---cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc----
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHK---DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK----   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----   75 (197)
                      +.+.+ |+.++-|..||..+ +. ...+.   .....|.++...+++...+ |+. +-|..|+..++.........    
T Consensus       418 g~lWi-gt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~  492 (781)
T 3v9f_A          418 GNLWF-GTYLGNISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQL  492 (781)
T ss_dssp             SCEEE-EETTEEEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred             CCEEE-EeccCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccccc
Confidence            44443 55545577787754 22 22222   1345789998888776444 455 45889998876543322111    


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcce-EEee
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR-HIYN  154 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~i~~  154 (197)
                      ....|.++...++|++.+.....| +..||..+++.. .+.....  +  ....|.++...++|.+.++.. ..+ ..|+
T Consensus       493 ~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~--l--~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          493 LENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEG--F--CSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             SCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTT--C--SCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             ccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCC--C--CCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            135789999999888766543344 777887665432 2322111  1  123366777777777665544 333 5555


Q ss_pred             c
Q psy18074        155 A  155 (197)
Q Consensus       155 ~  155 (197)
                      .
T Consensus       566 ~  566 (781)
T 3v9f_A          566 A  566 (781)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.00  E-value=0.27  Score=35.56  Aligned_cols=111  Identities=6%  Similarity=0.001  Sum_probs=61.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecc---cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q psy18074         33 MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTK---RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHAS  109 (197)
Q Consensus        33 ~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~  109 (197)
                      ....+..+.+++++..+ .++.+|.+++.+...+........+   ....+..+++.+++..++.+. ++.+ .+....|
T Consensus       203 ~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             SSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             CCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence            34578889999988755 4456787776643323322211111   223578899998887766655 6655 3444444


Q ss_pred             ceeeeeccccccccccccccceecccCcccceeeeecCcceE
Q psy18074        110 EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRH  151 (197)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  151 (197)
                      +.-..+.....     ....+..+.|.+++..++.+.++.+.
T Consensus       280 ~tW~~~~~~~~-----~~~~~~~v~~~~~~~~~~~G~~G~i~  316 (327)
T 2xbg_A          280 QTWQQDVDVKK-----VPSNFYKILFFSPDQGFILGQKGILL  316 (327)
T ss_dssp             SSCEECGGGTT-----SSSCCCEEEEEETTEEEEECSTTEEE
T ss_pred             cccEEcCccCC-----CCCCeEEEEEECCCceEEEcCCceEE
Confidence            33222221100     00124667777777777777766443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.76  E-value=0.36  Score=34.96  Aligned_cols=113  Identities=8%  Similarity=0.007  Sum_probs=61.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         32 DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        32 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      .....+..+.+.|++..++.+. .+.++.-.-..+.............+..+.+.++++.++. +.+|.+++.+...++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN  237 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe
Confidence            3456788999999888776654 4555443211122222222233457888999998876654 4577777664322332


Q ss_pred             eeeeccccccccccccccceecccCcccceeeeecCcce
Q psy18074        112 LGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPR  150 (197)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  150 (197)
                      -..+....   + .....+..+.+.+++..++.+....+
T Consensus       238 W~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~g~~g~i  272 (327)
T 2xbg_A          238 WGELLSPL---R-RNSVGFLDLAYRTPNEVWLAGGAGAL  272 (327)
T ss_dssp             ECCCBCTT---S-SCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred             eEeccCCc---c-cCCcceEEEEecCCCEEEEEeCCCeE
Confidence            22121110   0 00012467778888887777665433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.76  E-value=0.39  Score=35.32  Aligned_cols=95  Identities=8%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCC-Cceeec----ccCCCCeEEEEECCC---CCEEEEE---eCCCcEEEEECCCC----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLN-SPLNVH----KDMTSAVTSVDYSPT---GREFVAG---GYDKSLRLYLAHQG----   66 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~----~~~~~~v~~~~~sp~---~~~l~~~---~~d~~v~i~d~~~~----   66 (197)
                      ||.++++-...|.|++++..... ..+..+    ....+....++++|+   +..|+..   ..+..|.-|.+..+    
T Consensus        42 dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~  121 (347)
T 3das_A           42 GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSG  121 (347)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTT
T ss_pred             CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccc
Confidence            67777777668899988765321 112111    223567899999995   3444432   23445666666542    


Q ss_pred             -c---cccee---ecccccceeEEEEccCCCEEEEEe
Q psy18074         67 -H---SRDIY---HTKRMQHVTHTVWSLDNKFVISAS   96 (197)
Q Consensus        67 -~---~~~~~---~~~~~~~v~~v~~~~~~~~l~~~~   96 (197)
                       .   ....+   .....-....+.|.|||.+.++.+
T Consensus       122 ~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          122 EQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             CCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             ccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence             1   11111   111111345799999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.73  E-value=0.18  Score=37.12  Aligned_cols=105  Identities=9%  Similarity=-0.059  Sum_probs=58.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ecccccceeEEEEccC---CCEEEEEeC----C----
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQHVTHTVWSLD---NKFVISASD----E----   98 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~~~~~v~~v~~~~~---~~~l~~~~~----d----   98 (197)
                      ......++|.|+|..+ ++..++.|++++ .++. ....    ..........++++|+   +..|+.+..    +    
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEE-EEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            4567899999999744 455669999887 3454 1111    0112246889999997   445543322    2    


Q ss_pred             CcEEEEEcCCCc--e--eee-eccccccccccccccceecccCcccceeeee
Q psy18074         99 MNLRVWKAHASE--K--LGY-VNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        99 g~i~vwd~~~~~--~--~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      +.|..|+.....  .  ... +.....    ........++|.|||.+.++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~----~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPG----AYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEEC----CSSCCCCCEEECTTSCEEEEC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCC----CCCcCCceEEECCCCcEEEEE
Confidence            567777765431  0  011 110000    001113578899999766653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.53  E-value=0.42  Score=36.49  Aligned_cols=61  Identities=7%  Similarity=0.169  Sum_probs=39.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec-------ccccceeEEEEccC---CCEEEE
Q psy18074         34 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT-------KRMQHVTHTVWSLD---NKFVIS   94 (197)
Q Consensus        34 ~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------~~~~~v~~v~~~~~---~~~l~~   94 (197)
                      ....+.++|.|+|+.+++-...+.|++++..++........       ........++|+|+   +.+|+.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            45678999999999777654445788887655543221110       11356779999996   555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.48  E-value=0.5  Score=34.74  Aligned_cols=79  Identities=10%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-----ecccccceeEEEEccC---CCEEEEE---eCC
Q psy18074         30 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-----HTKRMQHVTHTVWSLD---NKFVISA---SDE   98 (197)
Q Consensus        30 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----~~~~~~~v~~v~~~~~---~~~l~~~---~~d   98 (197)
                      +-..-...+.++|.|+|..+++--..|.|++++...+......     ..........++++|+   +.+|+..   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3333566789999999997776655899999987655432111     1122356789999995   3444432   234


Q ss_pred             CcEEEEEcCC
Q psy18074         99 MNLRVWKAHA  108 (197)
Q Consensus        99 g~i~vwd~~~  108 (197)
                      +.|.-|.+..
T Consensus       107 ~~v~R~~~~~  116 (347)
T 3das_A          107 NRIVRMLYDE  116 (347)
T ss_dssp             EEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            5566665543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.48  E-value=0.64  Score=35.95  Aligned_cols=157  Identities=8%  Similarity=-0.062  Sum_probs=83.1

Q ss_pred             CccEEEEEcCCCcEEEEEcc-------CCCC-----c-----eee-cc-cCCCCeEEEEECCCCCEEEEE-eCCCcEEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIR-------QLNS-----P-----LNV-HK-DMTSAVTSVDYSPTGREFVAG-GYDKSLRLY   61 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~-------~~~~-----~-----~~~-~~-~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~   61 (197)
                      ++.++++-..++.|+.+|+.       +...     +     ... +. ........++|+|+|..|+.+ +....|+.+
T Consensus       258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            46778888788889999986       3211     0     111 11 112446799999999965544 566788885


Q ss_pred             EC--CCCccc--ceeec-----c---------ccccee-EEEEc-------cCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         62 LA--HQGHSR--DIYHT-----K---------RMQHVT-HTVWS-------LDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        62 d~--~~~~~~--~~~~~-----~---------~~~~v~-~v~~~-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      +.  ..+...  ..+..     +         .-.... .++..       ++|.++++=.....|+.++. +|. +.++
T Consensus       338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~Ti  415 (496)
T 3kya_A          338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTY  415 (496)
T ss_dssp             EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEE
T ss_pred             ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEE
Confidence            54  333210  11100     0         012244 44454       45666666666778998884 453 4444


Q ss_pred             cccccc----------------ccccccccceecccCcc-cceeeeecCc-ceEEeecchhhH
Q psy18074        116 NNKQRQ----------------ALDYSESLKQKYAHHPQ-IRRIARHRQV-PRHIYNAQAEHR  160 (197)
Q Consensus       116 ~~~~~~----------------~~~~~~~~v~~~~~s~~-~~~l~~~~~~-~~~i~~~~~~~~  160 (197)
                      .+....                .....-.....+++.++ |.+.++-... .+..+++.....
T Consensus       416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence            332110                00001123567888886 6655554433 455555544433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.40  E-value=0.8  Score=36.56  Aligned_cols=103  Identities=6%  Similarity=-0.002  Sum_probs=58.6

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeeccc------CCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKD------MTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTK   75 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~   75 (197)
                      +.++.+=...+.|+.+++.. ......+..      ....+.++++.+.+..|+ +-+..+.|.+.++. |.....+...
T Consensus       352 ~~iy~sD~~~~~I~r~~~~g-~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~  429 (628)
T 4a0p_A          352 KQLYWIDSRQNMIRKAQEDG-SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKG  429 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEEC
T ss_pred             CeEEEEecCcceEEEEEcCC-CCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeC
Confidence            44555545556666666653 122222222      234678999988776555 55567788888886 4444344333


Q ss_pred             cccceeEEEEccCCCEEE-EEeCCC--cEEEEEcC
Q psy18074         76 RMQHVTHTVWSLDNKFVI-SASDEM--NLRVWKAH  107 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~-~~~~dg--~i~vwd~~  107 (197)
                      ....+..++++|...+++ +-....  .|...++.
T Consensus       430 ~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d  464 (628)
T 4a0p_A          430 EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD  464 (628)
T ss_dssp             TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred             CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence            346789999999544444 432222  45555554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.38  E-value=0.8  Score=36.48  Aligned_cols=104  Identities=8%  Similarity=0.003  Sum_probs=60.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++.++++-...+.|+.+++.. ......+........++++.+.+..|+ +-+..+.|.+.++.... ...+....-...
T Consensus       360 ~~~ly~sD~~~~~I~r~~~~g-~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P  437 (619)
T 3s94_A          360 EGYIYWTDDEVRAIRRSFIDG-SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEP  437 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSE
T ss_pred             CCeEEEEeCCCCeEEEEEcCC-CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCe
Confidence            345566655566777777763 222222322234567888887555454 54567789998887543 233322333578


Q ss_pred             eEEEEccCCCEEEEEeC--CCcEEEEEcC
Q psy18074         81 THTVWSLDNKFVISASD--EMNLRVWKAH  107 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~--dg~i~vwd~~  107 (197)
                      ..+++.|...+|+....  .+.|...++.
T Consensus       438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~d  466 (619)
T 3s94_A          438 RAIVLDPMVGYMYWTDWGEIPKIERAALD  466 (619)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence            99999997445554432  3556666654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.93  E-value=0.48  Score=37.25  Aligned_cols=93  Identities=13%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             EEEEEccC----CCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCC------cc---ccee--eccccc
Q psy18074         15 LYSYDIRQ----LNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQG------HS---RDIY--HTKRMQ   78 (197)
Q Consensus        15 i~i~d~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~------~~---~~~~--~~~~~~   78 (197)
                      |.+.|.+.    .......+.. ......+..+|||.+++.++ .+.++.+++.+.-      ..   ....  ...-..
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             eeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            66777664    2223333333 34556789999999987655 6779999998741      11   0111  111225


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      .....+|.++|.-..+.-.|..|..|++..
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccH
Confidence            678899999994444666899999999864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.87  E-value=0.63  Score=34.15  Aligned_cols=95  Identities=8%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             Ccc-EEEEEcCCCcEEEEEccCCC-Cceeec----ccCCCCeEEEEECCC---CCEEEEE-eC-------CCcEEEEECC
Q psy18074          2 EAF-VFTAANEDFNLYSYDIRQLN-SPLNVH----KDMTSAVTSVDYSPT---GREFVAG-GY-------DKSLRLYLAH   64 (197)
Q Consensus         2 ~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~----~~~~~~v~~~~~sp~---~~~l~~~-~~-------d~~v~i~d~~   64 (197)
                      ||. ++++- ..|.|++++..... ..+..+    ....+....++++|+   +..|+.+ +.       ...|..|++.
T Consensus        28 dG~~l~V~e-~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~  106 (353)
T 2g8s_A           28 DNHGMLITL-RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLS  106 (353)
T ss_dssp             TTCCEEEEE-TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             CCCEEEEEe-CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEEC
Confidence            566 66554 56889988854210 111111    122456789999996   4545443 22       2356666665


Q ss_pred             CC--cc--cceeec------ccccceeEEEEccCCCEEEEEeC
Q psy18074         65 QG--HS--RDIYHT------KRMQHVTHTVWSLDNKFVISASD   97 (197)
Q Consensus        65 ~~--~~--~~~~~~------~~~~~v~~v~~~~~~~~l~~~~~   97 (197)
                      .+  ..  ...+..      ........++|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A          107 DDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             TTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             CCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            33  11  111100      00012357999999966555443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.029  Score=41.13  Aligned_cols=70  Identities=11%  Similarity=0.038  Sum_probs=41.9

Q ss_pred             cEEEEE-cCCCcEEEEEccCCCCceeeccc----CCCCeEE---EEE-C----CCCCEEEEEeCCCcEEEEECCCCcccc
Q psy18074          4 FVFTAA-NEDFNLYSYDIRQLNSPLNVHKD----MTSAVTS---VDY-S----PTGREFVAGGYDKSLRLYLAHQGHSRD   70 (197)
Q Consensus         4 ~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~---~~~-s----p~~~~l~~~~~d~~v~i~d~~~~~~~~   70 (197)
                      ..++.. ..||.|+.++..+ +.....+..    ...++..   ... .    ..+..+++|+.+|.++-.|+.+|+.+.
T Consensus        57 ~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           57 ETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             EEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             cEEEEEECCCCEEEEEECCC-CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence            444444 5789999998765 322111110    1122221   000 0    135678899999999999999999888


Q ss_pred             eeec
Q psy18074         71 IYHT   74 (197)
Q Consensus        71 ~~~~   74 (197)
                      .+..
T Consensus       136 ~~~~  139 (339)
T 2be1_A          136 AFGP  139 (339)
T ss_dssp             EEST
T ss_pred             EEec
Confidence            7743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.68  E-value=0.62  Score=34.19  Aligned_cols=108  Identities=6%  Similarity=-0.003  Sum_probs=57.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee------ecccccceeEEEEccC---CCEEEEE-eC-------
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY------HTKRMQHVTHTVWSLD---NKFVISA-SD-------   97 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~~~~~~v~~v~~~~~---~~~l~~~-~~-------   97 (197)
                      .....++|.|+|+.++.+...|.|++++.. +.....+      ..........++|+|+   +.+|+.+ +.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            456899999999834455567999999853 3221111      0112245789999996   4554433 22       


Q ss_pred             CCcEEEEEcCCCc----eeee-eccccccccccccccceecccCcccceeeee
Q psy18074         98 EMNLRVWKAHASE----KLGY-VNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        98 dg~i~vwd~~~~~----~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ...|..|++....    .... +......  .........+.|.|||.+.++.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKL--STGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCC--BSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCC--CCCcccCccEEECCCCcEEEEE
Confidence            2346666664321    1111 1110000  0001113578999999766553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.95  E-value=0.74  Score=32.57  Aligned_cols=102  Identities=13%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CccEEEEEcCC-------CcEEEEEccCCCCceeec---ccCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCC
Q psy18074          2 EAFVFTAANED-------FNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~   66 (197)
                      ++.+++.|+.+       ..+.+||+.+ . ....+   .........+.+  ++..++.|+.+     ..+.+||+.++
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATT-N-EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCC-C-cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            45677776543       3578899874 2 22222   111122233333  56667777654     36889999876


Q ss_pred             ccccee--ecccccceeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCc
Q psy18074         67 HSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEM-----NLRVWKAHASE  110 (197)
Q Consensus        67 ~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~vwd~~~~~  110 (197)
                      .-....  .... .....+.  .+++.++.|+.++     .+.+||+.+.+
T Consensus       231 ~W~~~~~~~~~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          231 AWRQVADMNMCR-RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCCSSCC-BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEeeCCCCCCcc-ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            432221  1111 1112222  2566777776543     47888876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.60  E-value=0.68  Score=32.75  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcc
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~   68 (197)
                      ++.+++.|+.+     ..+.+||+.+ . ....+..   .......+.+  ++..++.|+.+     ..+.+||+.+..-
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHT-G-HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCC-C-cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            46677777654     4588899874 2 2222211   1112233333  56666777654     4689999987653


Q ss_pred             cceeeccc-ccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q psy18074         69 RDIYHTKR-MQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHAS  109 (197)
Q Consensus        69 ~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~  109 (197)
                      ........ ......+.  -+++.++.|+.+     ..+.+||+.+.
T Consensus       235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            22211111 11112222  256666777654     34677777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.41  E-value=1.4  Score=31.08  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             CccEEEEEcCCC-----cEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEeCC-------CcEEEEECCCC
Q psy18074          2 EAFVFTAANEDF-----NLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGGYD-------KSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d-------~~v~i~d~~~~   66 (197)
                      ++.+++.|+.++     .+.+||+.+ . ....+..   .......+.+  ++..++.|+.+       ..+..||+.++
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKS-N-EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCC-C-eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            466777776553     467788764 2 2222211   1122223333  55666666542       35888998876


Q ss_pred             cccce--eecccccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q psy18074         67 HSRDI--YHTKRMQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHASE  110 (197)
Q Consensus        67 ~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  110 (197)
                      .-...  +.... .....+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       184 ~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          184 EWTYIAEMSTRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEEEECCCSSCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             cEEECCCCcccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            43222  11111 11222222  56677777654     368889987654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.15  E-value=1.6  Score=30.90  Aligned_cols=102  Identities=9%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             CccEEEEEcCC----CcEEEEEccCCCCceeec---ccCCCCeEEEEECCCCCEEEEEeCC------CcEEEEECCCCcc
Q psy18074          2 EAFVFTAANED----FNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPTGREFVAGGYD------KSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~i~d~~~~~~   68 (197)
                      ++.+++.|+.+    ..+.+||+.+ . ....+   .........+.+  ++..++.|+.+      ..+.+||..+..-
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVK-D-SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTT-T-EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCC-C-eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            46677777654    5678888875 2 22222   111122233333  56666777654      4688999887643


Q ss_pred             cce--eecccccceeEEEEccCCCEEEEEeC---------CCcEEEEEcCCCc
Q psy18074         69 RDI--YHTKRMQHVTHTVWSLDNKFVISASD---------EMNLRVWKAHASE  110 (197)
Q Consensus        69 ~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~vwd~~~~~  110 (197)
                      ...  +.... .....+.  -+++.++.|+.         -..+.+||+.+..
T Consensus       131 ~~~~~~p~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          131 HTKPSMLTQR-CSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             EEECCCSSCC-BSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             EeCCCCcCCc-ceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            222  11111 1112222  25666666653         3458889987654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.15  E-value=1.7  Score=31.18  Aligned_cols=109  Identities=12%  Similarity=-0.008  Sum_probs=58.8

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCcccceeecccccceeEEEEccCCCE
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKF   91 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~   91 (197)
                      ..|+..++.  +.....+..+..    ..++|++..|+..+. ...|+..++..+.....+ .+   ... ..++|++.+
T Consensus       129 ~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~~---~~~-~~~~P~g~~  197 (302)
T 3s25_A          129 TSLYRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-DC---NCY-KPVVLDDTN  197 (302)
T ss_dssp             EEEEEEETT--SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-CS---CEE-EEEEEETTE
T ss_pred             ceEEEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-CC---Ccc-ceeeecCCE
Confidence            344444444  333344444332    356778888876654 678888888766543332 22   222 235699999


Q ss_pred             EEEEeCC--CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         92 VISASDE--MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        92 l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      |+-....  ..|..-++.... ...+....            ...|+|++.+|...
T Consensus       198 iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~~------------~~~~~~~g~~Iy~~  240 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNINNPN-PVVLTEAN------------IEHYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEEEGGGTTEEEEECSSSCC-CEECSCSC------------EEEEEEETTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCC-eEEEeCCC------------cceEEECCCEEEEE
Confidence            8855433  356666665433 22232111            12367777777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.72  E-value=1.9  Score=30.63  Aligned_cols=102  Identities=13%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCCCceeec---ccCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcc
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLNSPLNVH---KDMTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~   68 (197)
                      ++.+++.|+.+     ..+.+||+.+ . ....+   .........+.+  ++..++.|+.+     ..+..||+.+..-
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPER-D-EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTT-T-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCC-C-eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            46677777643     3578888874 2 22222   111122233333  56666777654     4688899887543


Q ss_pred             cce--eecccccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q psy18074         69 RDI--YHTKRMQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHASE  110 (197)
Q Consensus        69 ~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  110 (197)
                      ...  +.... .....+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       197 ~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          197 RMITAMNTIR-SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             EECCCCSSCC-BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eeCCCCCCcc-ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            221  11111 12222223  56666777654     458899987654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.39  E-value=2  Score=30.21  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCC-Cceeecc---cCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCc
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLN-SPLNVHK---DMTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~   67 (197)
                      ++.+++.|+.+     ..+.+||+.+.. .....+.   ........+.+  ++..++.|+.+     ..+.+||..++.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45677777754     458889987522 0022221   11122223333  56666676643     368889988765


Q ss_pred             ccceeeccc-ccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q psy18074         68 SRDIYHTKR-MQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHASE  110 (197)
Q Consensus        68 ~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  110 (197)
                      -........ ......+.  .+++.++.|+.+     ..+.+||+.+..
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            322211111 11112222  256666776654     458888987654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.29  E-value=2.2  Score=30.31  Aligned_cols=101  Identities=14%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CccEEEEEcCC-----CcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEECCCCcc
Q psy18074          2 EAFVFTAANED-----FNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGGYD-----KSLRLYLAHQGHS   68 (197)
Q Consensus         2 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d-----~~v~i~d~~~~~~   68 (197)
                      ++.+++.|+.+     ..+.+||+.+ . ....+..   .......+.+  ++..++.|+.+     ..+.+||+.+..-
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPER-N-EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTT-T-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCC-C-eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            45677777654     4588899874 2 2222211   1122233333  56666777654     5689999987643


Q ss_pred             cce--eecccccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCC
Q psy18074         69 RDI--YHTKRMQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHAS  109 (197)
Q Consensus        69 ~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~  109 (197)
                      ...  +.... .....+.  -+++.++.|+.+     ..+.+||+.+.
T Consensus       244 ~~~~~~p~~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          244 TFVAPMKHRR-SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EECCCCSSCC-BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EECCCCCCCc-cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            222  11111 1112222  256666677643     34677777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.25  E-value=2.1  Score=36.83  Aligned_cols=103  Identities=13%  Similarity=0.166  Sum_probs=62.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEE--ECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY--LAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~--d~~~~~~~~~~~~~~~~~   79 (197)
                      +|+++++.  ..+|++|++.. .+.++.-..+-..+..+.....+.+++.|..-..+.++  +...+.+...........
T Consensus       895 ~g~Lla~i--g~~l~vy~l~~-~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~  971 (1158)
T 3ei3_A          895 NGKLLASI--NSTVRLYEWTT-EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW  971 (1158)
T ss_dssp             TTEEEEEE--TTEEEEEEECT-TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBC
T ss_pred             CCEEEEEc--CCEEEEEECCC-CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccccc
Confidence            46555544  36899999975 23333111111122222332357889988877777664  444555444443444577


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHA  108 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~  108 (197)
                      ++++.|-.++ .++.+..+|++.+.....
T Consensus       972 vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          972 MSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            8888886554 677789999999987654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.94  E-value=2.4  Score=30.12  Aligned_cols=102  Identities=14%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             CccEEEEEcCC--------CcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEeC-C-----CcEEEEECC
Q psy18074          2 EAFVFTAANED--------FNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGGY-D-----KSLRLYLAH   64 (197)
Q Consensus         2 ~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-d-----~~v~i~d~~   64 (197)
                      ++.+++.|+.+        ..+.+||+.+.  ....+..   .......+.+  ++..++.|+. +     ..+.+||..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCC
Confidence            45667777632        45888888752  2222211   1122222332  5566677765 2     478899988


Q ss_pred             CCcccce--eecccccceeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCc
Q psy18074         65 QGHSRDI--YHTKRMQHVTHTVWSLDNKFVISASDEM-----NLRVWKAHASE  110 (197)
Q Consensus        65 ~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~vwd~~~~~  110 (197)
                      +..-...  +.... .....+.+  +++.++.|+.++     .+.+||+.+.+
T Consensus       174 ~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          174 KFEWKELAPMQTAR-SLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEECCCCSSCC-BSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCeEEECCCCCCch-hceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            7642221  11111 11222222  566777776543     47888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.93  E-value=1.5  Score=31.28  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             CccEEEEEcC------CCcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEeCCC-----cEEEEECCCCc
Q psy18074          2 EAFVFTAANE------DFNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGGYDK-----SLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~-----~v~i~d~~~~~   67 (197)
                      ++.+++.|+.      -..+.+||+.+.  ....+..   .......+.+  ++..++.|+.++     .+.+||+.+..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            4667777765      245888998752  2222221   1112233333  566777777554     58889988764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.49  E-value=2.4  Score=30.77  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             CccEEEEEcCC-CcEEEEEccCCCCceeecccCC----CCeEEEEECCCCCEEEEEeC-C---------CcEEEEECCCC
Q psy18074          2 EAFVFTAANED-FNLYSYDIRQLNSPLNVHKDMT----SAVTSVDYSPTGREFVAGGY-D---------KSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~-d---------~~v~i~d~~~~   66 (197)
                      ++.+++.|+.+ ..+.+||+.........+....    .....+.+  ++..++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            45667776543 4688899863223333332211    12223333  4666666665 2         46889999876


Q ss_pred             cccceeecc-c-ccceeEEEEccCCCEEEEEeCC
Q psy18074         67 HSRDIYHTK-R-MQHVTHTVWSLDNKFVISASDE   98 (197)
Q Consensus        67 ~~~~~~~~~-~-~~~v~~v~~~~~~~~l~~~~~d   98 (197)
                      .-....... . ......+.  .+++.++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            422221111 1 11222222  467777777754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.20  E-value=1.1  Score=35.43  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             CeEEEEECCCCCEEEEEeCC------------CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE
Q psy18074         36 AVTSVDYSPTGREFVAGGYD------------KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~   95 (197)
                      ..-.|+|+|.|.+++.-..+            ..+.+.+..+++....+.......++.++|+||++.|+..
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            35678999999977664322            2455566667776655544444789999999999988654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=90.83  E-value=2  Score=33.93  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=42.2

Q ss_pred             CCeEEEEECCCCCEEEEEeC------------CCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEE
Q psy18074         35 SAVTSVDYSPTGREFVAGGY------------DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~   95 (197)
                      ...-.|.|+++|.+.++...            ...|+.++..+++....+.......++.++|+||+++|+..
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            45678999999987773321            12577777777776555432223568999999999988765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.41  E-value=3.5  Score=29.11  Aligned_cols=101  Identities=10%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             ccEEEEEcCC--CcEEEEEccCCCCceeecc---cCCCCeEEEEECCCCCEEEEEeCC----CcEEEEECCCCccccee-
Q psy18074          3 AFVFTAANED--FNLYSYDIRQLNSPLNVHK---DMTSAVTSVDYSPTGREFVAGGYD----KSLRLYLAHQGHSRDIY-   72 (197)
Q Consensus         3 ~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d----~~v~i~d~~~~~~~~~~-   72 (197)
                      +.+++.|+.+  ..+.+||+.+ . ....+.   ........+.+  ++..++.|+.+    ..+.+||..++.-.... 
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKD-Y-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTT-T-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCC-C-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            4566677653  5688999875 2 222221   11122233333  56666777654    57888998876532221 


Q ss_pred             -ecccccceeEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q psy18074         73 -HTKRMQHVTHTVWSLDNKFVISASDE------MNLRVWKAHASE  110 (197)
Q Consensus        73 -~~~~~~~v~~v~~~~~~~~l~~~~~d------g~i~vwd~~~~~  110 (197)
                       .... .....+.+  +++.++.|+.+      ..+.+||+.+..
T Consensus        88 ~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           88 PPTPR-DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             CSSCC-BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCccc-cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence             1111 11122222  56666777654      458889987654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.68  E-value=6.6  Score=31.72  Aligned_cols=107  Identities=9%  Similarity=0.074  Sum_probs=57.2

Q ss_pred             CccEEEEEcCC----CcEEEEEccCCCCceeecc---------cCCCCeEEEEECCCCCEEEEEeCC------CcEEEEE
Q psy18074          2 EAFVFTAANED----FNLYSYDIRQLNSPLNVHK---------DMTSAVTSVDYSPTGREFVAGGYD------KSLRLYL   62 (197)
Q Consensus         2 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d------~~v~i~d   62 (197)
                      ++.+++.|+.+    ..+.+||+.+ .. ...+.         ........+.+..++..++.|+.+      ..+.+||
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~-~~-W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHY-DK-IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECS-SC-EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCC-Ce-EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            46677777643    4588898875 22 33222         111223333443256677777643      3578899


Q ss_pred             CCCCcccceeecccccceeEEEEccCCCEEEEEeCCC--cEEEEEcCCCc
Q psy18074         63 AHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM--NLRVWKAHASE  110 (197)
Q Consensus        63 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~vwd~~~~~  110 (197)
                      ..++.-...........-.+.+.-.+++.++.|+.++  .+.+||+.+..
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            8875422211111111112233324778888877654  68889987653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.54  E-value=9.7  Score=32.94  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCC------CCEEEEEeC-CCcEEEEECCCCcccceeeccc
Q psy18074          5 VFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPT------GREFVAGGY-DKSLRLYLAHQGHSRDIYHTKR   76 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~   76 (197)
                      +++.+. ++.+..+.+.... ..... ......|.|+++.|.      +..++.|.. |+.++++.+.+.+.+.....+.
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~  602 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG  602 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence            444444 4677777776411 11111 123568999999863      357888885 9999999998655443322221


Q ss_pred             ccceeEEEEcc--CCCEEEEEeCCCcEEEEEc
Q psy18074         77 MQHVTHTVWSL--DNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        77 ~~~v~~v~~~~--~~~~l~~~~~dg~i~vwd~  106 (197)
                      ...+.++.+..  ...+|..|-.||.+.-+.+
T Consensus       603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          603 EIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            12344444432  3457788888998765544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.39  E-value=6  Score=30.32  Aligned_cols=54  Identities=4%  Similarity=-0.054  Sum_probs=34.6

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEECCCCcc---cc----eeecc----cccceeEEEEccC
Q psy18074         35 SAVTSVDYSPTGR-EFVAGGYDKSLRLYLAHQGHS---RD----IYHTK----RMQHVTHTVWSLD   88 (197)
Q Consensus        35 ~~v~~~~~sp~~~-~l~~~~~d~~v~i~d~~~~~~---~~----~~~~~----~~~~v~~v~~~~~   88 (197)
                      ...+.|+|.|+|. .++++...|.|++++......   +.    .+..+    .......++|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4568899999996 566667889999997542211   11    11111    1356788999996

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.33  E-value=4.5  Score=28.78  Aligned_cols=102  Identities=16%  Similarity=0.296  Sum_probs=51.4

Q ss_pred             CccEEEEEcCC-------CcEEEEEccCCCCceeecccCCC---CeEEEEECCCCCEEEEEeC------CCcEEEEECCC
Q psy18074          2 EAFVFTAANED-------FNLYSYDIRQLNSPLNVHKDMTS---AVTSVDYSPTGREFVAGGY------DKSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~------d~~v~i~d~~~   65 (197)
                      ++.+++.|+.+       ..+.+||+.+ . ....+.....   ....+.  .++..++.|+.      ...+.+||+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVA-A-KWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTT-T-EEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCC-C-CEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            45677777654       2477788864 2 2222221111   112222  25666666653      23688999987


Q ss_pred             Ccccce--eecccccceeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCc
Q psy18074         66 GHSRDI--YHTKRMQHVTHTVWSLDNKFVISASDE-----MNLRVWKAHASE  110 (197)
Q Consensus        66 ~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~  110 (197)
                      ..-...  +.... .....+.  -+++.++.|+.+     ..+.+||+.+.+
T Consensus       185 ~~W~~~~~~p~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          185 GDWKDLAPMKTPR-SMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TEEEEECCCSSCC-BSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CEEEECCCCCCCc-ccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            643222  11111 1112222  256666666543     346788887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.87  E-value=4.1  Score=32.91  Aligned_cols=106  Identities=8%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             CccEEEEEcCCC--cEEEEEccCCCCceeecc------cCCCCeEEEEECCC-CCEEEEEeC--C-----CcEEEEECCC
Q psy18074          2 EAFVFTAANEDF--NLYSYDIRQLNSPLNVHK------DMTSAVTSVDYSPT-GREFVAGGY--D-----KSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~sp~-~~~l~~~~~--d-----~~v~i~d~~~   65 (197)
                      ++.+++.|+.++  .+.+||+.+ . ....+.      .......++.+..+ +..++.|+.  +     ..+..||+.+
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t-~-~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTE-E-IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTT-T-EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             CCEEEEECCCCCCCCEEEEECCC-C-ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            677888887655  688999875 2 222222      11222234555554 566677765  2     4688999987


Q ss_pred             Ccc------cceee--cccccceeEEEEccCCCEEEEEeC--------CCcEEEEEcCCCc
Q psy18074         66 GHS------RDIYH--TKRMQHVTHTVWSLDNKFVISASD--------EMNLRVWKAHASE  110 (197)
Q Consensus        66 ~~~------~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~--------dg~i~vwd~~~~~  110 (197)
                      ..-      .....  ....... +++...+++.++.|+.        ...+.+||+.+..
T Consensus       578 ~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          578 ENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             TCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            761      11111  0111112 2223333667777763        3458899988654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=87.30  E-value=6.4  Score=28.16  Aligned_cols=97  Identities=10%  Similarity=0.001  Sum_probs=53.3

Q ss_pred             EEECCCCCEEEEEeCC--------------CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEe----CCCcE
Q psy18074         40 VDYSPTGREFVAGGYD--------------KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS----DEMNL  101 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~d--------------~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i  101 (197)
                      --+++++.+|+.+...              ..|+..++..+...... ..   .  ...|++++++|+-..    ....|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~~---~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-PD---P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-CS---C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-cC---C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            3457889988876543              35777777766532222 21   1  236788999988655    33455


Q ss_pred             EEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074        102 RVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus       102 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      ..-++.... ...+....            ..+++++++.|...+++.-.|+.+
T Consensus       132 y~~~~dGs~-~~~lt~~~------------~~~~~~~g~~iy~t~~g~~~Iy~~  172 (302)
T 3s25_A          132 YRIRIDGEE-KKKIKNHY------------LFTCNTSDRYFYYNNPKNGQLYRY  172 (302)
T ss_dssp             EEEETTSCC-CEEEESSC------------CCCSEEETTEEEEECTTTCCEEEE
T ss_pred             EEEECCCCC-eEEEeCCC------------ceEeeEECCEEEEEeCCCceEEEE
Confidence            555665322 23332221            134677777777554443344443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.92  E-value=12  Score=29.81  Aligned_cols=63  Identities=10%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             CccEEEE-EcCCCcEEEEEccCCC-----C------c-eeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q psy18074          2 EAFVFTA-ANEDFNLYSYDIRQLN-----S------P-LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         2 ~~~~l~~-~~~d~~i~i~d~~~~~-----~------~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      ||+++++ |-.+.++.++|.++..     .      . ..... -.-...-.+|.++|.-+.+-.-|..|..|++..
T Consensus       333 DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          333 DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            6666655 5668889999987421     1      1 11122 233467789999995555666899999999974

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.85  E-value=1.7  Score=36.56  Aligned_cols=37  Identities=8%  Similarity=0.167  Sum_probs=31.9

Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .+.+++..++..++++-+.|+.+++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4667777888889999999999999999999887754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.41  E-value=4.5  Score=34.06  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee
Q psy18074         36 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~   72 (197)
                      .+.+++..++..++++-+.|+.+++|++.++.++...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677778888889999999999999999998876654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=84.54  E-value=12  Score=28.76  Aligned_cols=106  Identities=6%  Similarity=0.006  Sum_probs=68.8

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCC--C-EEEEEeC---CCcEEEEECCCC---cc------ccee--ecc
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG--R-EFVAGGY---DKSLRLYLAHQG---HS------RDIY--HTK   75 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~-~l~~~~~---d~~v~i~d~~~~---~~------~~~~--~~~   75 (197)
                      |.+.+|..+  ....+.+.+|-.....+.+..+.  . .+..+..   .+.+.+.++...   ..      ...+  ...
T Consensus       179 G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~  256 (494)
T 1bpo_A          179 GAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (494)
T ss_dssp             EEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred             ceEEEeecc--ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence            567889887  35567788887666555553321  2 3334433   378999988542   11      0111  111


Q ss_pred             cccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         76 RMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      ..+...++..++....++.-+.-|.+++||+.++.++..-.-...
T Consensus       257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~  301 (494)
T 1bpo_A          257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  301 (494)
T ss_dssp             TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC
Confidence            235567788888888888889999999999999998876544333

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.06  E-value=9.9  Score=27.42  Aligned_cols=50  Identities=12%  Similarity=0.252  Sum_probs=26.5

Q ss_pred             CccEEEEEcC-C---------CcEEEEEccCCCCceeecccC----CCCeEEEEECCCCCEEEEEeCC
Q psy18074          2 EAFVFTAANE-D---------FNLYSYDIRQLNSPLNVHKDM----TSAVTSVDYSPTGREFVAGGYD   55 (197)
Q Consensus         2 ~~~~l~~~~~-d---------~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d   55 (197)
                      ++.+++.|+. +         ..+.+||+.+ . ....+...    .....++.  .++..++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~-~-~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT-N-SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTT-T-EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCC-C-cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            4667777765 2         4688899875 2 22222211    11222233  366777777754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=82.36  E-value=14  Score=32.95  Aligned_cols=104  Identities=5%  Similarity=0.000  Sum_probs=63.2

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEEC--CCCCEE-EEEe---CCCcEEEEECCCC---cc------cceeec-
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYS--PTGREF-VAGG---YDKSLRLYLAHQG---HS------RDIYHT-   74 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l-~~~~---~d~~v~i~d~~~~---~~------~~~~~~-   74 (197)
                      -.|.+.+|....  ...+.+.+|-+....+...  +....+ ..+.   ..+.+.+-++...   ..      ...+.. 
T Consensus       177 v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~  254 (1630)
T 1xi4_A          177 VVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (1630)
T ss_pred             ccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence            347788888873  4456677776665555442  222233 3222   2368888888542   11      111111 


Q ss_pred             -ccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q psy18074         75 -KRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        75 -~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  116 (197)
                       .......++..++....+...+.-|.++++|+.++.++..-.
T Consensus       255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence             112445567777777777888899999999999998876443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.99  E-value=1.7  Score=37.25  Aligned_cols=37  Identities=8%  Similarity=0.167  Sum_probs=30.6

Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYV  115 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  115 (197)
                      .+.+++..++..++++-+.|+.+++|++.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3455666778889999999999999999999887664

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.70  E-value=5.4  Score=31.63  Aligned_cols=60  Identities=5%  Similarity=-0.002  Sum_probs=38.0

Q ss_pred             ceeEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeee
Q psy18074         79 HVTHTVWSLDNKFVISASDE------------MNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ..-.|.|+|.|+++++-..+            +.+.+.+..+++....+....       .+.++.++|+||++.|..+
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-------gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-------GCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-------TCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-------CccCcCeeECCCCCEEEEE
Confidence            45678999999977664432            234555555666544443322       2346899999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 5e-11
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 8   AANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH 67
           +   D +   +D+R+            S + ++ + P G  F  G  D + RL+      
Sbjct: 201 SGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 68  SRDIYHTKRMQH-VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG 113
               Y    +   +T   +S   + +++  D+ N  VW A  +++ G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 4   FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLA 63
              T +++                  H ++   +TSV +S +GR  +AG  D +  ++ A
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 64  HQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 104
            +     +   H  R   V+    + D   V + S +  L++W
Sbjct: 300 LKADRAGVLAGHDNR---VSCLGVTDDGMAVATGSWDSFLKIW 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 7e-10
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 5   VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
              + + D  +  +D+      L       + V  V +   G+  ++   DK+LR++   
Sbjct: 219 FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 65  QGHSRDIY--HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWK 105
                     H      VT   +     +V++ S +  ++VW+
Sbjct: 278 NKRCMKTLNAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 37  VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 96
             +      G   ++G  DK+++++    G             V   ++    KF++S +
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCA 266

Query: 97  DEMNLRVWKAHASEKL 112
           D+  LRVW       +
Sbjct: 267 DDKTLRVWDYKNKRCM 282

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 34 TSAVTSVDYSPTGREFVAGGYDKSLRLY--------LAHQGHSRDIYHTKRMQHVTHTVW 85
           S VT V + P     V+   D +++++           +GH+  +              
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 7e-09
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 39  SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 98
           S+ ++  G+ FV+ G D  L  +    G S  I+ +K    V     S+D+K++++ S +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGD 327

Query: 99  MNLRVWK 105
               V++
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 5/130 (3%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 89
              V +V  S   R  V  G    ++++      ++         +  + + S     D 
Sbjct: 51  GEVVCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 90  KFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP 149
             +I   +   L +W   A                Y+ ++                    
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 150 RHIYNAQAEH 159
            H      + 
Sbjct: 170 LHNQTLVRQF 179

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 6   FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
           F +  +D  L ++      S        +S+V S D S   +  V G  DK   +Y
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 29  VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQHVTHTV 84
            H  +   ++   ++    +      +  + +Y         ++    H  +   VT   
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ---VTGVD 58

Query: 85  WSLDNKFVISASDEMNLRVWKAH 107
           W+ D+  +++   + N  VW   
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWTLK 81

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW 85
              VT VD++P     V  G D++  ++       +      R+      V 
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 21  RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM--- 77
            +L+S          +V SV ++  G+  V+G  D+S++L+     +++    T      
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 78  --------QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 112
                     V     + ++++++S S +  +  W   +   L
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 8e-07
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 24  NSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIYHTK 75
            +    +      V SV  +      ++G  D+ +  +           QGH   +    
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-- 355

Query: 76  RMQHVTHTVWSLDNKFVISASDEMNLRVWK 105
            +     +    +     + S +   R+WK
Sbjct: 356 -VAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 29  VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLD 88
             +      +   +      +        L  Y        ++ +     ++T    S D
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSAD 325

Query: 89  NKFVISASDEMNLRVWKA 106
            K V+   D+  +  +  
Sbjct: 326 RKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 3/66 (4%)

Query: 39  SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 98
           + D+SP   + +A        +      +   +    R   + +     D K        
Sbjct: 7   AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGDTKVAFIHGTR 63

Query: 99  MNLRVW 104
               + 
Sbjct: 64  EGDFLG 69

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 27  LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY-LAHQGHSRDIYHTKRMQH-VTHTV 84
               KD    ++ +   P+    +   +D SL +Y    Q  + D+  + R +H +    
Sbjct: 7   EQAPKD---YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 85  WSLDNKFVISASDEMNLRVWKAHAS 109
           +  +    I         +      
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 30  HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 89
             ++   V S+++SP  +     G D  +  +       + I +  +    +    +  +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSD 304

Query: 90  KFVISASDEMNLRVWKA 106
             +  A+ +   +   A
Sbjct: 305 NILCLATSDDTFKTNAA 321

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 34  TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 93
             A+T++  S  G+   +   +  +  +    G S  ++       +T    +     + 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDLF 70

Query: 94  SASDEMNLRVWKAHASE 110
           + S + +L+V  A  S 
Sbjct: 71  TVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (78), Expect = 0.004
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 42  YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR-MQHVTHTVWSLDNKFVISASDEMN 100
           +SP       G  D S+ ++  ++     I           ++V  L+   ++SA  + N
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291

Query: 101 LRVW 104
           ++ W
Sbjct: 292 IKFW 295

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 2e-04
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 11  EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 61
            D N++ Y +++    +         V ++ +       V+ G D  ++ +
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 8/108 (7%)

Query: 5   VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH 64
           +  + N D  +  +DI+       +                    +    D +++L+   
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 65  QGHSRDIYHTKRMQHVTHTVWSL----DNKFVISASD----EMNLRVW 104
            G       T         VW +            S     E  L V 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 7/64 (10%), Positives = 19/64 (29%)

Query: 41  DYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMN 100
            +SP G +  +   DK+++++                            + ++S S    
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 101 LRVW 104
           +   
Sbjct: 305 INFV 308

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 3/111 (2%)

Query: 3   AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYL 62
                 A+  +   S D++   +      D+T    +   SP     + G  ++  +  L
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

Query: 63  AHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG 113
             +   +          V    +      +       +L V+     EK+ 
Sbjct: 280 KQRKLIKAANLDHTYYCVA---FDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.8
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.71
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.67
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.63
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.43
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.42
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.07
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.07
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.06
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.93
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.78
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.63
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.6
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.27
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.72
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.29
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.19
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.88
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.83
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.25
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.08
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.09
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.92
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.78
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.98
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.67
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.65
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	80.52

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-25  Score=162.33  Aligned_cols=144  Identities=17%  Similarity=0.310  Sum_probs=126.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ecccccce
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v   80 (197)
                      ++.++++|+.|+.|++||+++ ..++..+.+|.+.|.+++|+|++..|++++.|+.+++|++........+ ...+...+
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             ccceeEEeecCceEEEEECCC-CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce
Confidence            467889999999999999987 5778889999999999999999999999999999999999988765544 33455779


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEee
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYN  154 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~  154 (197)
                      .+++|+|++++|++|+.||.|++||+.+++.+..+.+|...        |.+++|+|++.+|++++ ++.+.||+
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~--------V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR--------VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC--------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC--------EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999999888776543        78999999999999765 55889996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.6e-24  Score=160.89  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=113.0

Q ss_pred             EEEEEcCCCcEEEEEccCCCCce------eecccCCCCeEEEEECCCCCEEEEEeCCC---cEEEEECCCCcccceee--
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPL------NVHKDMTSAVTSVDYSPTGREFVAGGYDK---SLRLYLAHQGHSRDIYH--   73 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~--   73 (197)
                      +|++|+.|+.|++||+.+ ++++      ..+.+|..+|.+++|+|+|++|++|+.|+   .|++||+.++..+..+.  
T Consensus       197 ~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EEEEEeCCCcEEEEeecc-cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence            789999999999999986 3333      34567889999999999999999999887   48999999887655442  


Q ss_pred             ----------cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         74 ----------TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        74 ----------~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                                .+|...|++++|+|++++|++++.|+.|++||+.+++++.++.+|...+-    .....++|+|++..++
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~----~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE----IEEDILAVDEHGDSLA  351 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS----SGGGCCCBCTTSCBCS
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc----CCccEEEECCCCCEEE
Confidence                      36889999999999999999999999999999999999999988776431    1134678999999888


Q ss_pred             eec
Q psy18074        144 RHR  146 (197)
Q Consensus       144 ~~~  146 (197)
                      ++.
T Consensus       352 ~~~  354 (393)
T d1sq9a_         352 EPG  354 (393)
T ss_dssp             SCC
T ss_pred             Ecc
Confidence            665

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.5e-24  Score=157.89  Aligned_cols=154  Identities=12%  Similarity=0.136  Sum_probs=123.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      .||.+||+|+.|+.|++||..... .....+.+|.++|.+++|+|++++|++++.|+.|++||+.++...... ..+|..
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~   96 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR   96 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccc
Confidence            478999999999999999997522 356678899999999999999999999999999999999877654333 346778


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .|.+++|+|+++++++++.|+.+++|++............    ...+...|.+++|+|++++|++++ +..+.+|+...
T Consensus        97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_          97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cccccccccccccceeecccCcceeeeeeccccccccccc----ccccccccccccccccccceeccccCcEEEEEeecc
Confidence            8999999999999999999999999998765543322211    112234578999999999999765 56889998764


Q ss_pred             h
Q psy18074        158 E  158 (197)
Q Consensus       158 ~  158 (197)
                      .
T Consensus       173 ~  173 (371)
T d1k8kc_         173 K  173 (371)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.4e-23  Score=151.45  Aligned_cols=155  Identities=13%  Similarity=0.154  Sum_probs=128.3

Q ss_pred             CccEEEEEcC--CCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCE-EEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          2 EAFVFTAANE--DFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGRE-FVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      |+.+|++++.  +..+++|++.. +++...+.+|...|.+++|+|++.. |++|+.|+.|++||+++++..... ..|..
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-~~~~~  190 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTK  190 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSS
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccccccceeeeccccccccccccccccccccccc-ccccc
Confidence            6778888875  45589999987 5677888899999999999999885 788999999999999988766555 56788


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~  157 (197)
                      .|++++|+|+++++++++.|+.|++||+.++.....+..... ....|...|.+++|+|++++|++++. +.+.||+...
T Consensus       191 ~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccCcccccccccccccccccccccccccccccccccc-ccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999999999998887776654322 23345567899999999999998764 5789999865


Q ss_pred             hh
Q psy18074        158 EH  159 (197)
Q Consensus       158 ~~  159 (197)
                      .+
T Consensus       270 ~~  271 (311)
T d1nr0a1         270 LK  271 (311)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=2.8e-23  Score=149.81  Aligned_cols=150  Identities=13%  Similarity=0.169  Sum_probs=125.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCc-eeecccCCCCeEEEEECCCCCEEEEEeC--CCcEEEEECCCCcccceeecccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSP-LNVHKDMTSAVTSVDYSPTGREFVAGGY--DKSLRLYLAHQGHSRDIYHTKRM   77 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~   77 (197)
                      .+|++|++|+.||.|++||+...... ...+..|.++|.+++|+|++..|++++.  +..+++|++.++.....+ .+|.
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~  146 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQA  146 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCS
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            47899999999999999999864332 3457789999999999999999998875  456999999988876665 5677


Q ss_pred             cceeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeec
Q psy18074         78 QHVTHTVWSLDNKF-VISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNA  155 (197)
Q Consensus        78 ~~v~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~  155 (197)
                      ..|.+++|+|++++ +++|+.|+.|++||+++++....+..+...        |.++.|+|++++++++. ++.+.+|+.
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~--------i~~v~~~p~~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF--------VHSVRYNPDGSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC--------EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccceeeeccccccccccccccccccccccccccccc--------ccccccCcccccccccccccccccccc
Confidence            89999999999886 778999999999999998888777665543        78999999999998665 568899998


Q ss_pred             chhh
Q psy18074        156 QAEH  159 (197)
Q Consensus       156 ~~~~  159 (197)
                      ....
T Consensus       219 ~~~~  222 (311)
T d1nr0a1         219 VDGT  222 (311)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            6543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-23  Score=150.85  Aligned_cols=142  Identities=16%  Similarity=0.230  Sum_probs=121.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++..+++|+.|+.+++||+++ ++.+..+ .|...|.+++|+|++..+++++.|+.+++||+.++.....  ..|...|.
T Consensus       194 ~~~~~~~~~~d~~v~i~d~~~-~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~i~  269 (337)
T d1gxra_         194 DGTKLWTGGLDNTVRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLHESCVL  269 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTT-TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCCSSCEE
T ss_pred             ccccccccccccccccccccc-ceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccc--cccccccc
Confidence            678899999999999999986 4555554 5789999999999999999999999999999998876543  46778999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      +++|+|++++|++++.||.|++||+.+++.+..+...         ..|.+++|+|++++|++++ ++.+.||++.
T Consensus       270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---------SSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            9999999999999999999999999999887665432         2378999999999999765 4589999863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.4e-23  Score=147.57  Aligned_cols=144  Identities=13%  Similarity=0.260  Sum_probs=125.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCC--------------------CEEEEEeCCCcEEE
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTG--------------------REFVAGGYDKSLRL   60 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~l~~~~~d~~v~i   60 (197)
                      .++.+|++++.|+.|++|++.. ......+..|...+.++.|+|++                    ..+++++.|+.+++
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            3688999999999999999987 57778888899999999998764                    35888999999999


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccc
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIR  140 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  140 (197)
                      |++.++.++..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...        |.+++|+|+++
T Consensus       232 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--------V~~~~~s~~~~  302 (317)
T d1vyhc1         232 WDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF--------VTSLDFHKTAP  302 (317)
T ss_dssp             EETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC--------EEEEEECSSSS
T ss_pred             EECCCCcEEEEE-eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC--------EEEEEEcCCCC
Confidence            999999887766 567889999999999999999999999999999999988888766543        78999999999


Q ss_pred             eeeeecC-cceEEee
Q psy18074        141 RIARHRQ-VPRHIYN  154 (197)
Q Consensus       141 ~l~~~~~-~~~~i~~  154 (197)
                      +|++++. +.+.||+
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            9997665 5789996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.1e-23  Score=150.83  Aligned_cols=153  Identities=13%  Similarity=0.231  Sum_probs=118.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceee-------cccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccce---
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNV-------HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDI---   71 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~---   71 (197)
                      ++.+|++|+.|+.|++||.... .....       ..+|...|.+++|+|++..|++++.|+.|++||+.++.....   
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCeEEEEcCCCeEEEeecccC-ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence            6789999999999999999863 33322       346788999999999999999999999999999986543211   


Q ss_pred             --------eecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074         72 --------YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        72 --------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                              ....|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...+...  ......+|+|++.+|+
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~--~~~~~~~~spd~~~l~  372 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV--AVANGSSLGPEYNVFA  372 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSCTTCTTCEEEE
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEE--EEecCcccCCCCCEEE
Confidence                    124567889999999999999999999999999999999999888876543211  1123456889999999


Q ss_pred             eec-CcceEEeecch
Q psy18074        144 RHR-QVPRHIYNAQA  157 (197)
Q Consensus       144 ~~~-~~~~~i~~~~~  157 (197)
                      +++ ++.+.||++.+
T Consensus       373 s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         373 TGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEETTSEEEEEEEEE
T ss_pred             EEeCCCEEEEEeeee
Confidence            766 45889999854

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.6e-23  Score=152.94  Aligned_cols=158  Identities=10%  Similarity=0.107  Sum_probs=122.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCC-----------------ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCC
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNS-----------------PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ   65 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~-----------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~   65 (197)
                      +.++++++.|+.+++|++.....                 .......+...+.+++|+|++ +|++|+.|+.|++||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            46789999999999999753211                 011122344568899999987 889999999999999998


Q ss_pred             Cccccee-----ecccccceeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeecccc-----cccccccccccee
Q psy18074         66 GHSRDIY-----HTKRMQHVTHTVWSLDNKFVISASDEM---NLRVWKAHASEKLGYVNNKQ-----RQALDYSESLKQK  132 (197)
Q Consensus        66 ~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~  132 (197)
                      ++.+..+     ..+|...|.+++|+|+|++|++|+.|+   .|++||+.+++.+..+....     ...+..|...|.+
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~  294 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  294 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceee
Confidence            8765543     245788999999999999999999886   49999999998888775322     1234456778999


Q ss_pred             cccCcccceeeeecC-cceEEeecchhhHH
Q psy18074        133 YAHHPQIRRIARHRQ-VPRHIYNAQAEHRA  161 (197)
Q Consensus       133 ~~~s~~~~~l~~~~~-~~~~i~~~~~~~~~  161 (197)
                      ++|+|++++|++++. ..+.+|++...+..
T Consensus       295 l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         295 LSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            999999999997765 58999999776544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.1e-23  Score=149.02  Aligned_cols=153  Identities=16%  Similarity=0.218  Sum_probs=123.4

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc-------------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH-------------   67 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~-------------   67 (197)
                      .++.+|++|+.||.|++||+.+ +..+..+..|...|.+++|+|++.++++++.|+.+.+|+.....             
T Consensus        65 ~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  143 (340)
T d1tbga_          65 TDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT  143 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred             CCCCEEEEEECCCceeeeeccc-ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccc
Confidence            3788999999999999999987 57788889999999999999999999999999998888865211             


Q ss_pred             --------------------------------------------------------------------------ccceee
Q psy18074         68 --------------------------------------------------------------------------SRDIYH   73 (197)
Q Consensus        68 --------------------------------------------------------------------------~~~~~~   73 (197)
                                                                                                ....+ 
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-  222 (340)
T d1tbga_         144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-  222 (340)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEE-
Confidence                                                                                      00111 


Q ss_pred             cccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEE
Q psy18074         74 TKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHI  152 (197)
Q Consensus        74 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i  152 (197)
                      .+|...|++++|+|++++|++++.|+.|++||+........+.....      ...+.+++|+|++++|+++. ++.+.+
T Consensus       223 ~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~g~~dg~i~i  296 (340)
T d1tbga_         223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI------ICGITSVSFSKSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC------CSCEEEEEECSSSCEEEEEETTSCEEE
T ss_pred             eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc------cCceEEEEECCCCCEEEEEECCCEEEE
Confidence            22677899999999999999999999999999998887665543322      22368999999999999766 458999


Q ss_pred             eecchhhHH
Q psy18074        153 YNAQAEHRA  161 (197)
Q Consensus       153 ~~~~~~~~~  161 (197)
                      |+....+..
T Consensus       297 wd~~~~~~~  305 (340)
T d1tbga_         297 WDALKADRA  305 (340)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCcEE
Confidence            998765443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.1e-22  Score=145.06  Aligned_cols=149  Identities=15%  Similarity=0.144  Sum_probs=112.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee--ecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~~   79 (197)
                      ++.++++|+.|+.|++||+............|...|.+++|+|++.+|++++.|+.|++||+.++......  ...|...
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67899999999999999998532222234578899999999999999999999999999999877654332  3567789


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCcceEEeecc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQ  156 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~  156 (197)
                      |++++|+|++++|++++.||.|++||+.++...........     +...+.++.|. ++.+|+ ++.+..+.+|++.
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH-----AMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS-----TTSCEEEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred             cccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC-----CCCcEEEEEEC-CCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999987654332221111     11234556554 455555 4556689999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.4e-22  Score=147.12  Aligned_cols=160  Identities=13%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCC-CceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc---eeeccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLN-SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRD---IYHTKR   76 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~   76 (197)
                      .++++|++|+.|+.|++||+.... .+...+.+|...|.+++|+|++..|++++.|+.+++|++.......   .....|
T Consensus        61 p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            378999999999999999997532 3345567788999999999999999999999999999987655332   223567


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc----------cccccccccccceecccCcccceeeeec
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK----------QRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      ...|.+++|+|++++|++++.|+.+++||.............          .......+...+.+++|+|++++|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            789999999999999999999999999998754322111100          0011123345688999999999999766


Q ss_pred             -CcceEEeecchhhH
Q psy18074        147 -QVPRHIYNAQAEHR  160 (197)
Q Consensus       147 -~~~~~i~~~~~~~~  160 (197)
                       +..+.+|+....+.
T Consensus       221 ~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         221 HDSTVCLADADKKMA  235 (371)
T ss_dssp             TTTEEEEEEGGGTTE
T ss_pred             cCCcceEEeeecccc
Confidence             45789999876544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.9e-22  Score=142.18  Aligned_cols=146  Identities=10%  Similarity=0.161  Sum_probs=114.5

Q ss_pred             CccEEEEEcCC-CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          2 EAFVFTAANED-FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         2 ~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++..+++++.+ +.+++|++............|.+.+++++|+|++.+|++++.||.|++||+.++.........|...|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            34566666665 46999998753233333345778999999999999999999999999999998876555456788899


Q ss_pred             eEEEEccC----------CCEEEEEeCCCcEEEEEcCCCc-eeeeeccccccccccccccceecccCcccceeeeecCcc
Q psy18074         81 THTVWSLD----------NKFVISASDEMNLRVWKAHASE-KLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP  149 (197)
Q Consensus        81 ~~v~~~~~----------~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  149 (197)
                      .+++|+|.          +.++++|+.|+.|++||+.++. .+..+.+|..        .|.+++|+|++.++.++.+..
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--------~V~~v~~~~~~~l~s~g~D~~  280 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--------GVNNLLWETPSTLVSSGADAC  280 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--------CEEEEEEEETTEEEEEETTSC
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--------CeEEEEECCCCEEEEEECCCe
Confidence            99999875          4689999999999999997643 4444444443        378999999988777888889


Q ss_pred             eEEeec
Q psy18074        150 RHIYNA  155 (197)
Q Consensus       150 ~~i~~~  155 (197)
                      +.+|+.
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.6e-21  Score=139.79  Aligned_cols=147  Identities=12%  Similarity=0.159  Sum_probs=125.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.|+.|.+|++.+ .........|...+.+++|++++..+++++.|+.+++||+++++.+..+  .|...|.
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~  228 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIF  228 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccceeeccc--ccccceE
Confidence            678999999999999999987 5667778889999999999999999999999999999999998876654  4668999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-cceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-VPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~i~~~~~~~~  160 (197)
                      +++|+|+++++++++.|+.+++||+.+++.... ..+        ...|.+++|+|++++|++++. +.+.+|+....+.
T Consensus       229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~--------~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLH--------ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCC--------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEcccccccceeccccccccccccccccccc-ccc--------ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            999999999999999999999999988775432 222        234789999999999987654 5789999876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.8e-21  Score=137.33  Aligned_cols=147  Identities=13%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee--cccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH--TKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~   79 (197)
                      ++.++++|+.|+.|++||++. ..++..+..|...+.++.+++  .+|++++.|+.|++||+........+.  ..|...
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  262 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  262 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             CCCEEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeec
Confidence            678999999999999999987 577888889999999888754  699999999999999999877655542  334556


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcc-----eEEee
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP-----RHIYN  154 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-----~~i~~  154 (197)
                      +.++++  +++++++++.||.|++||+.+++.+..+.....   ..+...|.+++|+|++.++|++..+.     +.+|+
T Consensus       263 ~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~---~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         263 VTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTT---GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             eeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccC---CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            666666  457999999999999999999998877643221   12334589999999999999877553     67887


Q ss_pred             cc
Q psy18074        155 AQ  156 (197)
Q Consensus       155 ~~  156 (197)
                      ..
T Consensus       338 f~  339 (342)
T d2ovrb2         338 FD  339 (342)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=6.7e-21  Score=135.75  Aligned_cols=152  Identities=13%  Similarity=0.189  Sum_probs=112.5

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeec-ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC-------------
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVH-KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG-------------   66 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~-------------   66 (197)
                      .|+.+|++|+.|+.|++||+.+ +.....+ ..|...|++++|+|++.. ++++.|+.+++|+....             
T Consensus        22 ~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~   99 (299)
T d1nr0a2          22 ADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLS   99 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             CCCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccc
Confidence            4789999999999999999986 4555555 367788899999888764 45566778888875411             


Q ss_pred             ---------------------------------------------------------------------cccceeecccc
Q psy18074         67 ---------------------------------------------------------------------HSRDIYHTKRM   77 (197)
Q Consensus        67 ---------------------------------------------------------------------~~~~~~~~~~~   77 (197)
                                                                                           .........|.
T Consensus       100 ~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~  179 (299)
T d1nr0a2         100 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP  179 (299)
T ss_dssp             SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                 10000111256


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecc
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQ  156 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~  156 (197)
                      ..|.+++|+|+++++++++.++.|++||+.++........     +..+...|.+++|+|++.+|++++ ++.+.+|++.
T Consensus       180 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-----WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-----CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            7899999999999999999999999999987765543321     222344588999999999999765 4588999986


Q ss_pred             hhh
Q psy18074        157 AEH  159 (197)
Q Consensus       157 ~~~  159 (197)
                      ...
T Consensus       255 ~~~  257 (299)
T d1nr0a2         255 KPS  257 (299)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.6e-20  Score=133.55  Aligned_cols=149  Identities=12%  Similarity=0.160  Sum_probs=129.2

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++.+|++|+.|+.|++||+.+ +..+..+.+|...|.+++|+|++..+++++.++.+.+|+.........+ ..|...+
T Consensus        27 p~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  104 (317)
T d1vyhc1          27 PVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNV  104 (317)
T ss_dssp             SSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccc-ccccccc
Confidence            3688999999999999999987 5778889999999999999999999999999999999999877655444 5677889


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         81 THTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      .++.|+|+++.+++++.|+.+++||+.+++....+..+...        +.+++|+|++.+|+++. +..+.+|+....+
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~  176 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--------VRMVRPNQDGTLIASCSNDQTVRVWVVATKE  176 (317)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--------EEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc--------ceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence            99999999999999999999999999999888777665543        67899999999999765 4588999886544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.8e-20  Score=135.60  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=108.1

Q ss_pred             cEEEEEcCCCcEEEEEccCCC--CceeecccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEECCCCcccceeecccccce
Q psy18074          4 FVFTAANEDFNLYSYDIRQLN--SPLNVHKDMTSAVTSVDYSPT-GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      .++++++.|+.+++||.....  ........|...|.+++|+|+ +..|++++.|+.|++||+++++.+..+ .+|...+
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~~~~~v  251 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-EDDQEPV  251 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-CBTTBCC
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc-ccccccc
Confidence            467889999999999987522  122234567788999999997 678899999999999999999877766 3455555


Q ss_pred             eEEEEc---cCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         81 THTVWS---LDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        81 ~~v~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      ..+.|+   |+|++|++++.|+.|++||+.+++.+..+..+.....    .....+.+.+++.+++.+.++.+.+|++
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG----GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc----CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            444444   6899999999999999999999998887765543211    0012334445555555666778999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=9.8e-20  Score=131.67  Aligned_cols=149  Identities=14%  Similarity=0.153  Sum_probs=117.1

Q ss_pred             CccEEEEEc--CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCE-EEEEeCCCcEEEEECCCCccccee--eccc
Q psy18074          2 EAFVFTAAN--EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGRE-FVAGGYDKSLRLYLAHQGHSRDIY--HTKR   76 (197)
Q Consensus         2 ~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~i~d~~~~~~~~~~--~~~~   76 (197)
                      ++..+++++  .++.+.+|+..+ +..+..+.+|...|.+++|+|++.. +++++.|+.+++|+..........  ...|
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  204 (325)
T d1pgua1         126 EGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  204 (325)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             CCCccceeeccccceEEEEeecc-cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCC
Confidence            566666654  467799999986 5778888999999999999998875 678999999999999877654443  2456


Q ss_pred             ccceeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccC---cccceeeeec-CcceE
Q psy18074         77 MQHVTHTVWSLD-NKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHH---PQIRRIARHR-QVPRH  151 (197)
Q Consensus        77 ~~~v~~v~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~-~~~~~  151 (197)
                      ...|.+++|+|+ +.++++++.|+.|++||+.+++.+..+..+...        +..+.|+   |++++|++++ +..+.
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~--------v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP--------VQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------CCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             CCccEEeeeccccceeccccccccceeeeeeccccccccccccccc--------cccceeeeeccCCCEEEEEeCCCeEE
Confidence            678999999997 688999999999999999999988888766543        3344444   5777777655 56889


Q ss_pred             Eeecchhh
Q psy18074        152 IYNAQAEH  159 (197)
Q Consensus       152 i~~~~~~~  159 (197)
                      ||++...+
T Consensus       277 iwd~~~~~  284 (325)
T d1pgua1         277 VWDVTTSK  284 (325)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCC
Confidence            99987554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.2e-20  Score=131.97  Aligned_cols=63  Identities=8%  Similarity=-0.010  Sum_probs=51.6

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC--ceeecccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEECC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS--PLNVHKDMTSAVTSVDYSPTG-REFVAGGYDKSLRLYLAH   64 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~i~d~~   64 (197)
                      ++.+|++|+.|++|++||+.....  ......+|.++|.+++|+|++ ..|++|+.|+.|++|++.
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            688999999999999999975322  223334689999999999865 578899999999999886

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=4.1e-19  Score=130.44  Aligned_cols=156  Identities=16%  Similarity=0.256  Sum_probs=120.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++++|++|+.|+.|++||... ......+.+|...|.++.+++++..+++++.++.+++||..+....... . +.....
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~  208 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-S-IEDGVT  208 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-CSSCEE
T ss_pred             CCCcceecccccccccccccc-cccccccccccccccccccccccccccccccceeeeeeecccccccccc-c-cccccc
Confidence            688999999999999999987 5777788899999999999999999999999999999999987765554 2 224455


Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         82 HTVWSL-DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        82 ~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ++.+++ ++++|++++.|+.|++||..++.....+..... ....+...|.+++|+|++++|+++. ++.+.+|++....
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc-cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            555655 789999999999999999999887776643322 2334456689999999999998765 4588999987665


Q ss_pred             HH
Q psy18074        160 RA  161 (197)
Q Consensus       160 ~~  161 (197)
                      ..
T Consensus       288 ~~  289 (388)
T d1erja_         288 NK  289 (388)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=2.4e-19  Score=130.15  Aligned_cols=143  Identities=11%  Similarity=0.109  Sum_probs=113.8

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC--cEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK--SLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ||+++|+++ +|.|++||+.. +. +..+ .|...|.+++|+|||+.|++++.+.  .|++||..++.....  ..|...
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~-~~-~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~--~~~~~~   87 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSG-TY-VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF--EENLGN   87 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTS-SB-EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC--CCCCCS
T ss_pred             CCCEEEEEE-CCeEEEEECCC-Cc-EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe--eCCCce
Confidence            789999886 57999999975 34 3344 6899999999999999998766543  799999998876544  467789


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-----------Cc
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-----------QV  148 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~  148 (197)
                      +.+++|+|+|++|++++.++.+++|++.+++....+..+...        +.+++|+|||++|+...           +.
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--------ITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--------CCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EEeeeecccccccceeccccccccccccccceeeeeeccccc--------ccchhhccceeeeeeeccccccceeecccc
Confidence            999999999999999999999999999988877766555433        57899999999998432           11


Q ss_pred             ceEEeecchh
Q psy18074        149 PRHIYNAQAE  158 (197)
Q Consensus       149 ~~~i~~~~~~  158 (197)
                      .+.+|+....
T Consensus       160 ~~~v~d~~~~  169 (360)
T d1k32a3         160 AIHVYDMEGR  169 (360)
T ss_dssp             EEEEEETTTT
T ss_pred             ceeeeccccC
Confidence            3567777543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.1e-18  Score=125.86  Aligned_cols=145  Identities=16%  Similarity=0.189  Sum_probs=120.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.+++++..|+.|++||+.. ...+....++...+.++.++|++..+++++.|+.|++||+.++..+..+ .+|...|.
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~v~  247 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-QGHTALVG  247 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCCC
T ss_pred             ccceeeeecccceeeeeeccc-ccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc-cccccccc
Confidence            468899999999999999987 5667777888899999999999999999999999999999998877665 56888999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccccccccccccee-cccCcccceeeeecCcceEEeecchhhH
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQK-YAHHPQIRRIARHRQVPRHIYNAQAEHR  160 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~~~~~i~~~~~~~~  160 (197)
                      +++|+  +++|++++.||.|++||+.++......  +...        +.. ..+++++++++++.++.+.+|++...+.
T Consensus       248 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         248 LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTN--------LSAITTFYVSDNILVSGSENQFNIYNLRSGKL  315 (355)
T ss_dssp             EEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTT--------CCCCCEEEECSSEEEEEETTEEEEEETTTCCB
T ss_pred             ccccc--cceeeeeecccccccccccccceeccc--ccCC--------ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCE
Confidence            99986  468999999999999999877654332  2222        233 4567899999999988999999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=9.3e-19  Score=126.21  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++.++++++.|+.|++||+.+ +..+..+.+|...|.++.+++  ..|++++.||.|++||+.++.....   .|...+.
T Consensus       212 ~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~  285 (355)
T d1nexb2         212 ERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS---YHHTNLS  285 (355)
T ss_dssp             TTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE---EECTTCC
T ss_pred             cceeeecccccceEEeeeccc-ccccccccccccccccccccc--ceeeeeecccccccccccccceecc---cccCCce
Confidence            577899999999999999987 577888999999999999964  6899999999999999998765433   2334454


Q ss_pred             EE-EEccCCCEEEEEeCCCcEEEEEcCCCceeee-eccccccccccccccceecccCcccceeeeecCcceEEeec
Q psy18074         82 HT-VWSLDNKFVISASDEMNLRVWKAHASEKLGY-VNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNA  155 (197)
Q Consensus        82 ~v-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~  155 (197)
                      ++ +++++++++++|+ |+.|++||+++++.+.. +.++.        ..|.+++|+|+...++.+.++.+.||..
T Consensus       286 ~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~--------~~V~~v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         286 AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA--------DQIWSVNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTC--------SEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCC--------CCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence            44 4577777776665 88999999999987753 33333        3478999999854333455666666543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6e-18  Score=118.80  Aligned_cols=63  Identities=16%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCC
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG   66 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~   66 (197)
                      .||++|++|+.||.|++||+.+ .+++..+.+|.+.|.++.|  ++++|++++.|+.+++|++..+
T Consensus        23 ~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          23 YDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EcCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            3789999999999999999987 6788999999999999987  5689999999999999998743

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.4e-18  Score=121.72  Aligned_cols=105  Identities=12%  Similarity=0.221  Sum_probs=87.6

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCC----------CCEEEEEeCCCcEEEEECCCCcccc
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT----------GREFVAGGYDKSLRLYLAHQGHSRD   70 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~----------~~~l~~~~~d~~v~i~d~~~~~~~~   70 (197)
                      +++.+|++|+.|+.|++||+.........+..|...|.+++|+|.          +.+|++|+.|+.|++||+..+....
T Consensus       172 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             cCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence            478899999999999999998643334456789999999999875          4579999999999999998755444


Q ss_pred             eeecccccceeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         71 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        71 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      ....+|...|++++|+|++ .+++++.|+.|++|++
T Consensus       252 ~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         252 KALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            4446788999999999986 5889999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-17  Score=119.41  Aligned_cols=143  Identities=14%  Similarity=0.181  Sum_probs=107.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee---------
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY---------   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~---------   72 (197)
                      +|++|++|+.|+.|++||+.+ ++++..+.+|.+.|.+++|+|+  .|++++.|+.+++|+..........         
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC  102 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEee
Confidence            688999999999999999987 6788999999999999999874  8999999999999987632111000         


Q ss_pred             ----------------------------------------------------------------------ecccccceeE
Q psy18074         73 ----------------------------------------------------------------------HTKRMQHVTH   82 (197)
Q Consensus        73 ----------------------------------------------------------------------~~~~~~~v~~   82 (197)
                                                                                            ..+|.  ...
T Consensus       103 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~  180 (342)
T d2ovrb2         103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRV  180 (342)
T ss_dssp             EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCE
T ss_pred             eecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcc--ccc
Confidence                                                                                  00122  233


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecchhh
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQAEH  159 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~~~  159 (197)
                      ..+++++.++++++.||.|++||+..++.+..+..+...        +.++++  ++++|++++ +..+.+|+....+
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~  248 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--------TSGMEL--KDNILVSGNADSTVKIWDIKTGQ  248 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC--------EEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccc--------eeEEec--CCCEEEEEcCCCEEEEEeccccc
Confidence            445667889999999999999999999888877766543        455555  455777655 5588999986544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.1e-17  Score=121.18  Aligned_cols=144  Identities=11%  Similarity=0.024  Sum_probs=112.2

Q ss_pred             CCccEEEEEcCCC--cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          1 MEAFVFTAANEDF--NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         1 ~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      .||+.|++++.+.  .|++||...  .....+..|...+.+++|+|++++|++++.++.+++|++.++.....+ ..|..
T Consensus        52 pDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  128 (360)
T d1k32a3          52 GDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREA  128 (360)
T ss_dssp             SSSEEEEEEEETTEEEEEEEETTT--CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSS
T ss_pred             CCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeee-ecccc
Confidence            4788887765443  689999985  446677789999999999999999999999999999999988876655 45667


Q ss_pred             ceeEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-
Q psy18074         79 HVTHTVWSLDNKFVISAS----------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-  147 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  147 (197)
                      .+.+++|+|+|++|+.+.          .++.+++||+.+++..........         +..++|+|||++|+.++. 
T Consensus       129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---------~~~~~~spdg~~l~~~s~~  199 (360)
T d1k32a3         129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH---------DYAPAFDADSKNLYYLSYR  199 (360)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB---------EEEEEECTTSCEEEEEESC
T ss_pred             cccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccc---------cccccccCCCCEEEEEeCC
Confidence            889999999999998543          345699999988776544333222         467899999999996654 


Q ss_pred             cceEEeecc
Q psy18074        148 VPRHIYNAQ  156 (197)
Q Consensus       148 ~~~~i~~~~  156 (197)
                      ..+.+|+..
T Consensus       200 ~~~~~~d~~  208 (360)
T d1k32a3         200 SLDPSPDRV  208 (360)
T ss_dssp             CCCCEECSS
T ss_pred             CceEccccc
Confidence            466777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.8e-17  Score=123.17  Aligned_cols=152  Identities=9%  Similarity=-0.042  Sum_probs=111.7

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~~~~~   79 (197)
                      .++++.+.+|+|.+||..+ ++.+..+..+ ..+..++|||||+++++++.|+.+++||+.++......    ...|.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t-~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCC-CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3468899999999999987 6778888765 46899999999999999999999999999887643222    1234456


Q ss_pred             eeEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeccccccccc---cccccceecccCcccceeee-e-cCcceEEe
Q psy18074         80 VTHTVWSLDNKFV-ISASDEMNLRVWKAHASEKLGYVNNKQRQALD---YSESLKQKYAHHPQIRRIAR-H-RQVPRHIY  153 (197)
Q Consensus        80 v~~v~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~-~-~~~~~~i~  153 (197)
                      +.+++|+|||++| +++..++.|.+||..+++.+..+..+......   ........+.++|+|..++. . ..+.+.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            6777888999986 57888999999999999988877654332110   11223456778888876643 2 23466777


Q ss_pred             ecch
Q psy18074        154 NAQA  157 (197)
Q Consensus       154 ~~~~  157 (197)
                      +...
T Consensus       191 d~~~  194 (432)
T d1qksa2         191 DYTD  194 (432)
T ss_dssp             ETTC
T ss_pred             EccC
Confidence            6544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=7.1e-17  Score=120.56  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=93.3

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee----ecccccc
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQH   79 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~~~~~~~   79 (197)
                      .++++++.||.|++||+.+ ++.+..+..+ ..+..++|||||+++++++.|+.+++||+.+++.....    ..+|...
T Consensus        33 ~~~V~~~~dg~v~vwD~~t-~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS-KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT-CSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCC-CcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            4568889999999999998 5778888775 46899999999999999999999999999988754332    1245566


Q ss_pred             eeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccc
Q psy18074         80 VTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQR  120 (197)
Q Consensus        80 v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~  120 (197)
                      +.+++|+|||++++ ++..++.+.+||..++........+..
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~  152 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM  152 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence            77888899999876 556789999999999888776665543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.6e-17  Score=116.37  Aligned_cols=126  Identities=6%  Similarity=-0.005  Sum_probs=94.4

Q ss_pred             ceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee--ecccccceeEEEEccCC-CEEEEEeCCCcEE
Q psy18074         26 PLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDN-KFVISASDEMNLR  102 (197)
Q Consensus        26 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~  102 (197)
                      .++..++|...|++++|+|++.+|++++.||.|++||+..+.....+  ..+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            45677899999999999999999999999999999999776543322  23688899999999874 5788999999999


Q ss_pred             EEEcCCCceeeeeccccccccccccccceecccCcccceee-eecCcceEEeecchh
Q psy18074        103 VWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA-RHRQVPRHIYNAQAE  158 (197)
Q Consensus       103 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~i~~~~~~  158 (197)
                      +|++..+.............       .....+.++...++ .+.+..+.+|+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANL-------GICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCS-------CEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             eeeccccccccccccccccc-------ccccccccccccccccccccccceeecccc
Confidence            99998877665554433321       13334455555555 455668899987543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=110.40  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=104.8

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ...+++++.|+.|++||+++ .+++..+.++...+..+.++  +..+++++.|+.|++||+++...+... ..+...+..
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~  223 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRC  223 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEE
T ss_pred             ccccccccCCCceeeecCCC-CcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee-cccceeeee
Confidence            45678888999999999987 57788888888888888775  578999999999999999988876665 445555654


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccc-cccccccccccceecccCcccceeeeec-CcceEEee
Q psy18074         83 TVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNK-QRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYN  154 (197)
Q Consensus        83 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~  154 (197)
                        +++++.+|++++.||.|++||+.+.......... ....+..|...|.+++|+  +.+|++++ |+.+.||+
T Consensus       224 --~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 --IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             --ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence              5678899999999999999998643222111110 111223334457788884  55677655 45889996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1e-15  Score=109.69  Aligned_cols=144  Identities=13%  Similarity=0.021  Sum_probs=110.2

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeeccc--CCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecc----c
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKD--MTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTK----R   76 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~----~   76 (197)
                      .++++++.|++|.+||+.+ .+.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++.+......    +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            5789999999999999987 466666654  335578999999999875 5678999999999999876655221    1


Q ss_pred             ccceeEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         77 MQHVTHTVWSLDNKFVISAS------------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                      ...+..++|+|++++++.+.            .+..+.+||..+++....+.....         +..++|+|||+++++
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---------ITMLAWARDGSKLYG  151 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---------CCCEEECTTSSCEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC---------ceEEEEcCCCCEEEE
Confidence            23456899999999998664            457789999999888776654433         478999999999987


Q ss_pred             ecCcceEEeecchh
Q psy18074        145 HRQVPRHIYNAQAE  158 (197)
Q Consensus       145 ~~~~~~~i~~~~~~  158 (197)
                      +. ....+|+....
T Consensus       152 ~~-~~~~~~d~~~~  164 (337)
T d1pbyb_         152 LG-RDLHVMDPEAG  164 (337)
T ss_dssp             ES-SSEEEEETTTT
T ss_pred             Ec-CCcceeeeecC
Confidence            65 34567776544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=2.8e-16  Score=117.27  Aligned_cols=83  Identities=5%  Similarity=-0.129  Sum_probs=57.0

Q ss_pred             ccceeEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeeccccc-cccccccccceecccCcccceee-ee--
Q psy18074         77 MQHVTHTVWSLDNKFVIS-------ASDEMNLRVWKAHASEKLGYVNNKQR-QALDYSESLKQKYAHHPQIRRIA-RH--  145 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~-~~--  145 (197)
                      ...+..++|+|++++|++       ++.+++|+|||+.+++....+..... ..+..+...+..++|||||+++. ++  
T Consensus       303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            455788999999999984       45578899999999887665533211 11112233467889999999774 21  


Q ss_pred             ---cCcceEEeecchhh
Q psy18074        146 ---RQVPRHIYNAQAEH  159 (197)
Q Consensus       146 ---~~~~~~i~~~~~~~  159 (197)
                         .++.+.||+....+
T Consensus       383 ~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         383 GKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             CTTSCCEEEEEETTTTE
T ss_pred             CCCCCCeEEEEECCCCe
Confidence               23468999987664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=4.4e-15  Score=106.38  Aligned_cols=150  Identities=15%  Similarity=0.130  Sum_probs=103.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCC-ceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCccccee--ecccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNS-PLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIY--HTKRM   77 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~~~--~~~~~   77 (197)
                      +-.++++++.|++|++|++...+. .+.....|.+.+..++|+|||++|++++ .|+.|++|++.........  ...+.
T Consensus         3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             ceEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            345678899999999999975332 2222336788999999999999986554 5899999999865433222  22333


Q ss_pred             cceeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc--ceEEee
Q psy18074         78 QHVTHTVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV--PRHIYN  154 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~  154 (197)
                      ..+..++|+|||++|++++. ++.+.+|+...............      ...+.++.++|++++++.....  .+.+|+
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG------LDGCHSANISPDNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC------CTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC------CccceEEEeeecceeeeccccccceeeEEE
Confidence            56788999999999988764 67899998876554433221111      1225788999999988755433  456666


Q ss_pred             cch
Q psy18074        155 AQA  157 (197)
Q Consensus       155 ~~~  157 (197)
                      ...
T Consensus       157 ~~~  159 (333)
T d1ri6a_         157 VSD  159 (333)
T ss_dssp             ECT
T ss_pred             ecc
Confidence            544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.63  E-value=2.4e-14  Score=101.02  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=108.8

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecccccceeE
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTH   82 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~   82 (197)
                      ..+++++.|+.|.+||+.+ ++.+..+.. ...+..++|+|+|++|+ +++.++.|++||+.+++.+..+...  ..+..
T Consensus         3 ~~yV~~~~~~~v~v~D~~t-~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--~~~~~   78 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTS-NKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQG   78 (301)
T ss_dssp             EEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEE
T ss_pred             EEEEEECCCCEEEEEECCC-CeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc--ccccc
Confidence            4567788999999999987 566666654 45678999999999875 6678899999999999887766333  56789


Q ss_pred             EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ecC-cceEEeecchh
Q psy18074         83 TVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HRQ-VPRHIYNAQAE  158 (197)
Q Consensus        83 v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~-~~~~i~~~~~~  158 (197)
                      ++|++++.+++ ++..++.+.+|+..+++....+.....         ...++|+|++..++. +.. ..+.+|+....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---------PLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---------EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccccccccccccccccceeeecccccceeeeecccccc---------ceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            99999998766 556778899999999887777655443         367889999988763 333 34567766544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=1.7e-14  Score=107.83  Aligned_cols=151  Identities=8%  Similarity=-0.042  Sum_probs=105.9

Q ss_pred             CCccEEEEEcCCCcEEEEEccCCCC-ceee---cccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEECCCCcccceeec-
Q psy18074          1 MEAFVFTAANEDFNLYSYDIRQLNS-PLNV---HKDMTSAVTSVDYSPTGREF-VAGGYDKSLRLYLAHQGHSRDIYHT-   74 (197)
Q Consensus         1 ~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~---~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~-   74 (197)
                      .||+++++++.|+.|++||+.+... ....   ...|.+.+.+..|+|||++| ++++.++.+.+||..+++....+.. 
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            4899999999999999999976332 1222   23445556667788999986 6778899999999999887655421 


Q ss_pred             ---------ccccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         75 ---------KRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        75 ---------~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                               .+......+.++|+|..++ +...++.|.+||..+++...........       .+..++|+|||++++.
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~-------~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER-------FLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS-------SEEEEEECTTSCEEEE
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC-------ccccceECCCCCEEEE
Confidence                     2335567889999998765 6677899999999877654432222111       1478999999998764


Q ss_pred             ecC--cceEEeecchh
Q psy18074        145 HRQ--VPRHIYNAQAE  158 (197)
Q Consensus       145 ~~~--~~~~i~~~~~~  158 (197)
                      +..  ..+.+++....
T Consensus       224 a~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         224 AANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEGGGTEEEEEETTTT
T ss_pred             eccccceEEEeecccc
Confidence            443  34566665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.57  E-value=2.3e-14  Score=102.82  Aligned_cols=148  Identities=9%  Similarity=-0.103  Sum_probs=105.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEE-EEeCCCcEEEEECCCCcccceeecc----
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQGHSRDIYHTK----   75 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~----   75 (197)
                      ++.+|++++.+++|.+||+.+ .+.+..+. .+...+.+++|+|||++++ +++.++.|++||+.+++....+...    
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~   85 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   85 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence            688999999999999999987 57777665 4456678999999999875 5567899999999998776554221    


Q ss_pred             -cccceeEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee
Q psy18074         76 -RMQHVTHTVWSLDNKFVISAS------------DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI  142 (197)
Q Consensus        76 -~~~~v~~v~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  142 (197)
                       +...+..++|+|||+++++++            .++.+.+||..+++....+......      ..+..+.+++++..+
T Consensus        86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP------RQVYLMRAADDGSLY  159 (346)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC------SSCCCEEECTTSCEE
T ss_pred             ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc------CceEEEEecCCCEEE
Confidence             123467899999999987654            4677889988877655443322111      113456677777776


Q ss_pred             eeecCcceEEeecchh
Q psy18074        143 ARHRQVPRHIYNAQAE  158 (197)
Q Consensus       143 ~~~~~~~~~i~~~~~~  158 (197)
                      +.+  ....+|+....
T Consensus       160 ~~~--~~~~~~~~~~~  173 (346)
T d1jmxb_         160 VAG--PDIYKMDVKTG  173 (346)
T ss_dssp             EES--SSEEEECTTTC
T ss_pred             EeC--CcceEEEccCC
Confidence            654  34566665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.46  E-value=4.1e-13  Score=96.17  Aligned_cols=104  Identities=7%  Similarity=-0.045  Sum_probs=82.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         40 VDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      +++++++++|++++.++.|.+||+.+++.+..+...+...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            478999999999999999999999999988776555556788999999999875 6667899999999999888766543


Q ss_pred             cccccccccccceecccCcccceeeee
Q psy18074        119 QRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       119 ~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ....  .....+..++|+|||++++..
T Consensus        82 ~~~~--~~~~~~~~v~~s~DG~~l~v~  106 (346)
T d1jmxb_          82 SVPG--EVGRSMYSFAISPDGKEVYAT  106 (346)
T ss_dssp             CSTT--EEEECSSCEEECTTSSEEEEE
T ss_pred             cccc--ccCCceEEEEEecCCCEEEEE
Confidence            2211  111235688999999988754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1e-12  Score=98.78  Aligned_cols=139  Identities=9%  Similarity=0.042  Sum_probs=98.4

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceee-----cccCCCCeEEEEECCCCCEEEEEe---------CCCcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNV-----HKDMTSAVTSVDYSPTGREFVAGG---------YDKSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~---------~d~~v~i~d~~~~~   67 (197)
                      |+.++..  .++.+.+||+.+. .....     +..|...|.++.|||||++|+.++         .++.+++||+.++.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~  103 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTC-CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEE--cCCcEEEEECCCC-CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence            4555553  4678999999873 33332     344557899999999999998874         35788999999987


Q ss_pred             ccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccccc-ccccc---------cccceecccCc
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQ-ALDYS---------ESLKQKYAHHP  137 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~---------~~~v~~~~~s~  137 (197)
                      ....  ..+...+..+.|||||+++|... ++.+++|+..+++........... .+...         ......+.|||
T Consensus       104 ~~~l--~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP  180 (470)
T d2bgra1         104 LITE--ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (470)
T ss_dssp             ECCS--SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             cccc--ccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC
Confidence            6543  45567899999999999999854 678999999988766544332221 11111         12245677999


Q ss_pred             ccceeeeec
Q psy18074        138 QIRRIARHR  146 (197)
Q Consensus       138 ~~~~l~~~~  146 (197)
                      ||++||...
T Consensus       181 DGk~ia~~~  189 (470)
T d2bgra1         181 NGTFLAYAQ  189 (470)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCccceeE
Confidence            999999654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=1.5e-11  Score=87.45  Aligned_cols=71  Identities=8%  Similarity=-0.074  Sum_probs=49.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec-CcceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR-QVPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~i~~~~~  157 (197)
                      .+..++++|++.+++.+  ++.+.+||+.+++.+..+....         .+.+++|+|||++|+.+. ++.+.+|+...
T Consensus       242 ~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---------~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---------SYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---------CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC---------CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            34455566666665544  4678888888777776654332         257999999999988654 55789999976


Q ss_pred             hhH
Q psy18074        158 EHR  160 (197)
Q Consensus       158 ~~~  160 (197)
                      .+.
T Consensus       311 ~~~  313 (337)
T d1pbyb_         311 LEK  313 (337)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.42  E-value=1.9e-11  Score=85.76  Aligned_cols=146  Identities=7%  Similarity=0.038  Sum_probs=105.3

Q ss_pred             CccEE-EEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-CcEEEEECCCCcccceeecccccc
Q psy18074          2 EAFVF-TAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-KSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      |+..+ +++..++.+.+|+..+ ......+.. ...+..+.++|++..+++++.+ +.+.+|+............  ...
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  201 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVT-KAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAA  201 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSE
T ss_pred             CCCeeeeeeccccceeeeeccc-cceeeeccc-CCCceEEEeeccccceeeecccccccccccccceeeeecccc--cCC
Confidence            44444 5666788899999986 455555543 5667899999999988877655 5666777776665554422  256


Q ss_pred             eeEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeccccccccccccccceecccCccccee-eeec-CcceEEee
Q psy18074         80 VTHTVWSLDNKFVISAS---DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRI-ARHR-QVPRHIYN  154 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~~~~~i~~  154 (197)
                      +..++|+++++.++.+.   .++.|.+||+.+++.+..+..+..         +..++|+|||++| +++. ++.+.+|+
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---------~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD---------PAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS---------EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC---------EEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            78899999999877543   346899999999988776654432         4789999999976 4554 45789999


Q ss_pred             cchhhH
Q psy18074        155 AQAEHR  160 (197)
Q Consensus       155 ~~~~~~  160 (197)
                      +...+.
T Consensus       273 ~~t~~~  278 (301)
T d1l0qa2         273 TATNTI  278 (301)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=5.8e-10  Score=80.02  Aligned_cols=115  Identities=14%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCc-eeecccC----------CCCeEEEEECCCCCEEEEEeCC----------CcEEE
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSP-LNVHKDM----------TSAVTSVDYSPTGREFVAGGYD----------KSLRL   60 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~----------~~~v~~~~~sp~~~~l~~~~~d----------~~v~i   60 (197)
                      ++..++.++.++.+++|++...... +.....+          ......++++|++..++....+          ..|.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            4556778888999999998752211 1111111          1223457889999988765433          37999


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCCE--EEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKF--VISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      ||..+++.+..+..+  ..+.+++|+|||+.  +++++.++.|++||+.+++.+..+...
T Consensus       285 ~d~~t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         285 LDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EeCCCCcEEEEecCC--CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            999999877665333  56889999999983  457778999999999999998887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=6.9e-10  Score=79.59  Aligned_cols=112  Identities=6%  Similarity=-0.104  Sum_probs=80.6

Q ss_pred             CccEEEEE-----cCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCC
Q psy18074          2 EAFVFTAA-----NEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~   66 (197)
                      ||..+++.     ..+..|++||..+ ++.+..+..+..+  .++|||||+.|++.+          .++.|++||+.++
T Consensus        12 dg~~~~v~~~~~~~~~~~v~v~D~~t-g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_          12 DARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCEEEEEecccCCCcCeEEEEECCC-CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            56666554     3456799999987 5667777654443  799999999887643          4789999999998


Q ss_pred             cccceeecc------cccceeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeec
Q psy18074         67 HSRDIYHTK------RMQHVTHTVWSLDNKFVISAS--DEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        67 ~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~  116 (197)
                      +........      .......++|+|++++++...  .+..+.+|+..+++.+..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          89 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence            876654211      112346689999999887654  46789999999887766554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=3e-10  Score=85.12  Aligned_cols=111  Identities=9%  Similarity=0.078  Sum_probs=83.5

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee----cccccceeEEEEccCCCEEEEEeC---------CCcEEEE
Q psy18074         38 TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH----TKRMQHVTHTVWSLDNKFVISASD---------EMNLRVW  104 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~vw  104 (197)
                      ..+.|.+++++++.  .++.+.+||+.++.....+.    ..|...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789998886654  47789999999998655441    234467999999999999997643         5678999


Q ss_pred             EcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchhh
Q psy18074        105 KAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEH  159 (197)
Q Consensus       105 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~~  159 (197)
                      |+.+++.. .+..+...        +..+.|||||++||...+..+.+++....+
T Consensus        98 d~~~~~~~-~l~~~~~~--------~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~  143 (470)
T d2bgra1          98 DLNKRQLI-TEERIPNN--------TQWVTWSPVGHKLAYVWNNDIYVKIEPNLP  143 (470)
T ss_dssp             ETTTTEEC-CSSCCCTT--------EEEEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred             ECCCCccc-ccccCCcc--------ccccccccCcceeeEeecccceEEECCCCc
Confidence            99987743 34333322        578899999999999888888888776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.2e-09  Score=75.23  Aligned_cols=153  Identities=10%  Similarity=0.150  Sum_probs=96.6

Q ss_pred             CCccEEE-EEcCCCcEEEEEccCCCCcee--ecccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEECCCCccccee-ecc
Q psy18074          1 MEAFVFT-AANEDFNLYSYDIRQLNSPLN--VHKDMTSAVTSVDYSPTGREFVAGGY-DKSLRLYLAHQGHSRDIY-HTK   75 (197)
Q Consensus         1 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~~~~~~~-~~~   75 (197)
                      .||++|+ ++..|+.|.+|++........  ....+...+..++|+|+|++|++++. ++.+.+|+.......... ...
T Consensus        46 pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~  125 (333)
T d1ri6a_          46 PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE  125 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC
Confidence            4788774 555689999999975332222  12234456788999999999988874 678899988766543333 233


Q ss_pred             cccceeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecC--cceEE
Q psy18074         76 RMQHVTHTVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ--VPRHI  152 (197)
Q Consensus        76 ~~~~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~~~i  152 (197)
                      +...+.++.++|++++++.++. +..+.+|+................  .........++|++++..+.....  ....+
T Consensus       126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v  203 (333)
T d1ri6a_         126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  203 (333)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee--eecCCCccEEEEeccceeEEeeccccCceEE
Confidence            4467889999999999886654 567999998765433222111100  011122467889988877764332  23445


Q ss_pred             eec
Q psy18074        153 YNA  155 (197)
Q Consensus       153 ~~~  155 (197)
                      +..
T Consensus       204 ~~~  206 (333)
T d1ri6a_         204 WEL  206 (333)
T ss_dssp             EES
T ss_pred             Eee
Confidence            543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.07  E-value=7.3e-09  Score=74.73  Aligned_cols=152  Identities=9%  Similarity=-0.123  Sum_probs=92.0

Q ss_pred             CccEEEEE-----cCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCC
Q psy18074          2 EAFVFTAA-----NEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~   66 (197)
                      ||..+++.     +..+.|++||..+ ++.+..+..+..+  .+.|+|||++|++++          .++.|.+||+.++
T Consensus        31 dg~~~~~~~~~~~~~~~~v~v~D~~t-g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~  107 (373)
T d2madh_          31 DGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCEEEEEcccccCCCceEEEEECCC-CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC
Confidence            56666543     2345799999887 5667777655433  789999999998865          3578999999977


Q ss_pred             cccceeecc----------------------------------------------cccceeEEEEccCCCEE-EEEeCCC
Q psy18074         67 HSRDIYHTK----------------------------------------------RMQHVTHTVWSLDNKFV-ISASDEM   99 (197)
Q Consensus        67 ~~~~~~~~~----------------------------------------------~~~~v~~v~~~~~~~~l-~~~~~dg   99 (197)
                      +........                                              +...+.++.++|+|+.+ ++.+.|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg  187 (373)
T d2madh_         108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCC
Confidence            654322100                                              11233456677776654 4667778


Q ss_pred             cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecchh
Q psy18074        100 NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAE  158 (197)
Q Consensus       100 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~~  158 (197)
                      .+.+|+...+.............  ........+.+++++..+..+.+..+.+|+....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         188 GLAKTDHAGGAAGAGLVGAMLTA--AQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             eEEEEEcCCceeeEEEeeecccc--CccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            88888877666554433221100  0001123445666776776666666666665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=6.7e-10  Score=80.59  Aligned_cols=65  Identities=8%  Similarity=-0.105  Sum_probs=45.2

Q ss_pred             CccEEEEEc----------CCCcEEEEEccCCCCceeecccCCC-------CeEEEEECCCCCEEEEEe-CCCcEEEEEC
Q psy18074          2 EAFVFTAAN----------EDFNLYSYDIRQLNSPLNVHKDMTS-------AVTSVDYSPTGREFVAGG-YDKSLRLYLA   63 (197)
Q Consensus         2 ~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~-------~v~~~~~sp~~~~l~~~~-~d~~v~i~d~   63 (197)
                      ||..+++++          .|+.|.+||..+ .+++..+..+..       ....++|+|||+++++++ .++.+.+||+
T Consensus        75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~  153 (368)
T d1mdah_          75 SGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV  153 (368)
T ss_dssp             TSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEcccCccccccccCCeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            566666543          367799999987 455555543221       234689999999988775 5789999998


Q ss_pred             CCCc
Q psy18074         64 HQGH   67 (197)
Q Consensus        64 ~~~~   67 (197)
                      .+++
T Consensus       154 ~~~~  157 (368)
T d1mdah_         154 PGAS  157 (368)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            7554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=7.8e-09  Score=74.84  Aligned_cols=132  Identities=5%  Similarity=-0.140  Sum_probs=87.9

Q ss_pred             EcCCCc--EEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEECCCCcccceeecc-
Q psy18074          9 ANEDFN--LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG----------YDKSLRLYLAHQGHSRDIYHTK-   75 (197)
Q Consensus         9 ~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~v~i~d~~~~~~~~~~~~~-   75 (197)
                      +..++.  |+++|..+ ++.+..+..+..+  .++|+|||+.|++.+          .|+.|.+||..+++....+... 
T Consensus        40 ~~~~g~~~~~~~d~~~-~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~  116 (368)
T d1mdah_          40 AYFAGTTENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             TTTCSSEEEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             ccCCCcceEEEEeCCC-CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc
Confidence            444454  66668776 4666666655444  589999999888754          3677999999998876554211 


Q ss_pred             -----cccceeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee
Q psy18074         76 -----RMQHVTHTVWSLDNKFVISAS-DEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR  144 (197)
Q Consensus        76 -----~~~~v~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  144 (197)
                           .......++|+|||++++.+. .++.+.+||+.+++....+..+..... ........+.+++||..+..
T Consensus       117 ~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~  190 (368)
T d1mdah_         117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEE
T ss_pred             cceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEE
Confidence                 112345789999999998665 579999999999988776654332211 11222345667777776653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.93  E-value=3.6e-08  Score=71.01  Aligned_cols=111  Identities=10%  Similarity=0.000  Sum_probs=76.0

Q ss_pred             EEEEcCCCcEEEEEccCCCC-ceeecccC----------CCCeEEEEECCCCCEEE----------EEeCCCcEEEEECC
Q psy18074          6 FTAANEDFNLYSYDIRQLNS-PLNVHKDM----------TSAVTSVDYSPTGREFV----------AGGYDKSLRLYLAH   64 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~-~~~~~~~~----------~~~v~~~~~sp~~~~l~----------~~~~d~~v~i~d~~   64 (197)
                      ++..+.++.+.+|+...... .......+          ......+.++|++..++          ....++.+.+||..
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence            44555678888888764211 11111111          12334556666666544          34456789999999


Q ss_pred             CCcccceeecccccceeEEEEccCCCE--EEEEeCCCcEEEEEcCCCceeeeeccc
Q psy18074         65 QGHSRDIYHTKRMQHVTHTVWSLDNKF--VISASDEMNLRVWKAHASEKLGYVNNK  118 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~v~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~  118 (197)
                      +++.+..+.  +...+..++|+|||+.  +++++.|+.|++||+.+++.+..+...
T Consensus       307 t~~~~~~~~--~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         307 VGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             CCcEEEEec--CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            998877653  3467899999999985  357889999999999999999888644

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.83  E-value=3.7e-08  Score=72.68  Aligned_cols=133  Identities=8%  Similarity=-0.025  Sum_probs=90.4

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecc------------------------------cCCCCeEEEEECCCCCEEEEE-
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHK------------------------------DMTSAVTSVDYSPTGREFVAG-   52 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------------------------~~~~~v~~~~~sp~~~~l~~~-   52 (197)
                      ..|++|+.+|.|.+|++.+. +.+..+.                              .|.........+|||++|+.. 
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~-r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSM-RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTT-EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCC-cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            34788889999999998753 3222211                              122334455567899988655 


Q ss_pred             eCCCcEEEEECCCCcccceeecccccceeEEEEccCCCE--EEEEeCCC-----------------cEEEEEcCCCceee
Q psy18074         53 GYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKF--VISASDEM-----------------NLRVWKAHASEKLG  113 (197)
Q Consensus        53 ~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--l~~~~~dg-----------------~i~vwd~~~~~~~~  113 (197)
                      ..+..|.++|+.+.+.......++...+..++|+|+|++  ++..+.+.                 .+..+|..+.+...
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            477899999999998776654455578999999999984  44444332                 23457777776665


Q ss_pred             eeccccccccccccccceecccCcccceeeeec
Q psy18074        114 YVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      .+.....         ...+.++|+|+++....
T Consensus       171 qI~v~~~---------p~~v~~spdGk~a~vt~  194 (441)
T d1qnia2         171 QVIVDGN---------LDNTDADYTGKYATSTC  194 (441)
T ss_dssp             EEEESSC---------CCCEEECSSSSEEEEEE
T ss_pred             EEecCCC---------ccceEECCCCCEEEEEe
Confidence            5543332         46889999999887554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=2.9e-07  Score=64.06  Aligned_cols=146  Identities=8%  Similarity=0.083  Sum_probs=98.3

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeec--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-eccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVH--KDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~   78 (197)
                      +|.++++....+.+.+++..  +..+..+  ..+......+++.+++..+++....+.|++|+.. +..+..+ ..+...
T Consensus       124 ~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~  200 (279)
T d1q7fa_         124 KGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITN  200 (279)
T ss_dssp             TSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSC
T ss_pred             CCcEEEEeeccceeeEeccC--CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeeccccccc
Confidence            35566665555666666654  3444433  3345678889999999888888888999999976 4444443 223345


Q ss_pred             ceeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecch
Q psy18074         79 HVTHTVWSLDNKFVISASD-EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA  157 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~~  157 (197)
                      ....+++.++|+.+++-.. ++.|.+|+. +|+.+..+......      .....+++.|+|+++++.....+.+|...+
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~------~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH------AQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC------SCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCC------CCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence            6889999999997776544 446889985 47666555332211      114688899999988877777888887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.78  E-value=1.9e-07  Score=68.88  Aligned_cols=147  Identities=7%  Similarity=-0.049  Sum_probs=92.7

Q ss_pred             CccEE-EEEcCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEE--EEEeCCC-----------------cEEE
Q psy18074          2 EAFVF-TAANEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREF--VAGGYDK-----------------SLRL   60 (197)
Q Consensus         2 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l--~~~~~d~-----------------~v~i   60 (197)
                      ||+++ ++...++.|.++|+.+ .+....+. .....+..++|+|+|+.+  +..+.+.                 .+..
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            67766 4556788899999987 34454443 345678999999999843  3333222                 2344


Q ss_pred             EECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC-----------------------------------------
Q psy18074         61 YLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM-----------------------------------------   99 (197)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----------------------------------------   99 (197)
                      +|..+.+.......+  ..+..++|+|+|+++++.+.+.                                         
T Consensus       161 iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         161 IDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             ecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            677776655554333  4678899999999988765432                                         


Q ss_pred             cEEEEEcCCCceeeeeccccccccccccccceecccCcccceeee-ec-CcceEEeecchhhH
Q psy18074        100 NLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIAR-HR-QVPRHIYNAQAEHR  160 (197)
Q Consensus       100 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~-~~~~~i~~~~~~~~  160 (197)
                      .+.+++....+.+..+....         ....+.++|||+++.. +. +..+.+|+..+.+.
T Consensus       239 v~vvd~~~~~~v~~~IPvgk---------sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPK---------NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBS---------SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             cEEEEcccCCceEEEEeCCC---------CccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            22333332222233332222         2478999999998864 33 34889999876544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.66  E-value=1.5e-06  Score=61.10  Aligned_cols=107  Identities=9%  Similarity=0.123  Sum_probs=80.7

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ccceeecccccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGH--SRDIYHTKRMQH   79 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~   79 (197)
                      ||+++++...+++|+.++..  +. ...+....+.+.+++|+|+|..+++...++.+..++.....  ............
T Consensus        38 dG~l~vt~~~~~~I~~i~p~--g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          38 DGTIFVTNHEVGEIVSITPD--GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             TSCEEEEETTTTEEEEECTT--CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             CCCEEEEeCCCCEEEEEeCC--CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccc
Confidence            78999999989988888865  23 34445566789999999999988888888888888765432  222222233456


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         80 VTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      .+.+++.++++++++-+.++.+..++...+..
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCCcc
Confidence            88999999999988888888888888876643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.5e-07  Score=70.32  Aligned_cols=134  Identities=10%  Similarity=0.049  Sum_probs=86.6

Q ss_pred             cCCCcEEEEEccCCCCceeeccc---CCCCeEEEEECCCCCEEEEEe---------CCCcEEEEECCCCcccceee-ccc
Q psy18074         10 NEDFNLYSYDIRQLNSPLNVHKD---MTSAVTSVDYSPTGREFVAGG---------YDKSLRLYLAHQGHSRDIYH-TKR   76 (197)
Q Consensus        10 ~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~---------~d~~v~i~d~~~~~~~~~~~-~~~   76 (197)
                      ..+|.|.+||+.+. .....+..   ..-.+....||||++.++...         ..+.+.++|+.++....... ...
T Consensus        34 ~~~g~i~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~  112 (465)
T d1xfda1          34 EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS  112 (465)
T ss_dssp             CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred             eCCCcEEEEECCCC-CEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence            35678999999863 32222222   123567788999999887653         35788999999887544321 122


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc-cccccccccc---------ceecccCcccceeeee
Q psy18074         77 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ-RQALDYSESL---------KQKYAHHPQIRRIARH  145 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~---------v~~~~~s~~~~~l~~~  145 (197)
                      ...+....|||||+.+|... ++.|.+.+..++..+....... ..++.+..+.         -..+.|||||++||..
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            24566788999999998765 6778888888776655443322 2222221111         2456799999999954

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=5.4e-06  Score=56.67  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             cEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCC---cEEEEECC
Q psy18074         14 NLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDK---SLRLYLAH   64 (197)
Q Consensus        14 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~v~i~d~~   64 (197)
                      .|++.|..  +.....+..+...+...+|||||+.|+......   .+++.+..
T Consensus        20 ~l~i~d~d--G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~   71 (269)
T d2hqsa1          20 ELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA   71 (269)
T ss_dssp             EEEEEETT--SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEEEEcCC--CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc
Confidence            47777776  333444445577889999999999998754332   35555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=1.5e-05  Score=54.51  Aligned_cols=104  Identities=8%  Similarity=-0.016  Sum_probs=70.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGY  114 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  114 (197)
                      ....+++++|++..+++...++.|..++........ ...........+++.++|+++++....+.|..++....... .
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~  217 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-V  217 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-E
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-E
Confidence            345789999999988888888899999987554322 21233356789999999998888887888888876543322 2


Q ss_pred             eccccccccccccccceecccCcccceeeeecC
Q psy18074        115 VNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus       115 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      +....   +    .....++++++|.+.++...
T Consensus       218 ~~~~~---~----~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         218 LPFTG---L----NTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CCCCS---C----CCEEEEEECTTCCEEEEEGG
T ss_pred             EccCC---C----CCeEEEEEeCCCCEEEEECC
Confidence            21111   0    12468889998877666443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=4.1e-06  Score=57.28  Aligned_cols=121  Identities=12%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcccceeeccccccee
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYD-K--SLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ++++...++...+|...........+...........|+|++..++..+.+ +  .+.+.+...+.....   .+.....
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~  217 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL---SSTFLDE  217 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC---CCSSSCE
T ss_pred             ceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEe---ecCcccc
Confidence            344444455444443332123344444556677888999999988876544 3  444455554443222   2235667


Q ss_pred             EEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeccccccccccccccceecccCc
Q psy18074         82 HTVWSLDNKFVISASD---EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHP  137 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  137 (197)
                      ...|+|||++|+..+.   ...++++++..+... .+......        +..++|||
T Consensus       218 ~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~~g~--------~~~p~WSP  267 (269)
T d2hqsa1         218 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPATDGQ--------VKFPAWSP  267 (269)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCSSSE--------EEEEEECC
T ss_pred             ceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCCCCc--------EEeEEeCC
Confidence            8899999999885443   346888998766543 33333322        35677887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.41  E-value=2.4e-05  Score=56.26  Aligned_cols=154  Identities=12%  Similarity=0.049  Sum_probs=88.7

Q ss_pred             CccEEEEE-cCCCcEEEEEccCCCCce--ee--cccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCcccceee--
Q psy18074          2 EAFVFTAA-NEDFNLYSYDIRQLNSPL--NV--HKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGHSRDIYH--   73 (197)
Q Consensus         2 ~~~~l~~~-~~d~~i~i~d~~~~~~~~--~~--~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~--   73 (197)
                      ||++++++ .....|.+|+....+...  ..  ..........+.|+|+++++++.. .++.|.+|++..+.......  
T Consensus       155 dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~  234 (365)
T d1jofa_         155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEee
Confidence            67766665 445678888865423221  11  112345688999999999886554 67899999987654322110  


Q ss_pred             ----------------cccccceeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeccccccccccccccce
Q psy18074         74 ----------------TKRMQHVTHTVWSLDNKFVISASD------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQ  131 (197)
Q Consensus        74 ----------------~~~~~~v~~v~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  131 (197)
                                      ..+......+.++|+|++|+++..      ...|..|++.....+.........  ........
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~G~~p~  312 (365)
T d1jofa_         235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT--PTSGGHSN  312 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC--SSCCTTCC
T ss_pred             eeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE--EcCCCCcc
Confidence                            011234567899999999886532      223777776543222211100000  00011236


Q ss_pred             ecccCc-ccceeeee-c-CcceEEeecch
Q psy18074        132 KYAHHP-QIRRIARH-R-QVPRHIYNAQA  157 (197)
Q Consensus       132 ~~~~s~-~~~~l~~~-~-~~~~~i~~~~~  157 (197)
                      .++++| +|++|+.+ . .+.+.+|+...
T Consensus       313 ~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         313 AVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            788998 88877644 3 34788887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.33  E-value=5.8e-05  Score=53.16  Aligned_cols=144  Identities=9%  Similarity=0.012  Sum_probs=83.1

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC----CCcEEEEECCCCcccceeec-cc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY----DKSLRLYLAHQGHSRDIYHT-KR   76 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~-~~   76 (197)
                      +|+++++-..++.|+.|+... ......+.........++++++|..+++...    .+.+...+...+........ ..
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  128 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  128 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCEEEEECCCCEEEEEECCC-CeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc
Confidence            577778777788888888764 2333334444567889999999988776543    23455555555544333211 11


Q ss_pred             ccceeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeec--Cc
Q psy18074         77 MQHVTHTVWSLDNKFVISASD------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR--QV  148 (197)
Q Consensus        77 ~~~v~~v~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~  148 (197)
                      ...++.+.+.++|++.++...      .+.+..++...+. +..+....        ...+.++|+|+++.|....  ..
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~--------~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNI--------SVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEE--------SSEEEEEECTTSSEEEEEEGGGT
T ss_pred             ccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeecc--------ceeeeeeeccccceEEEecccCC
Confidence            245788999999997766432      1234444443222 22221111        1136789999997654332  33


Q ss_pred             ceEEeec
Q psy18074        149 PRHIYNA  155 (197)
Q Consensus       149 ~~~i~~~  155 (197)
                      .+..|++
T Consensus       200 ~I~~~d~  206 (319)
T d2dg1a1         200 RLHRIAL  206 (319)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            4555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.31  E-value=3.3e-05  Score=55.54  Aligned_cols=110  Identities=5%  Similarity=-0.029  Sum_probs=68.7

Q ss_pred             CeEEEEECCCCCEEEEEeC-CCcEEEEECCCC-cccce--e-ecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q psy18074         36 AVTSVDYSPTGREFVAGGY-DKSLRLYLAHQG-HSRDI--Y-HTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHAS  109 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~~~-d~~v~i~d~~~~-~~~~~--~-~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~  109 (197)
                      .+.++.|+|+|+++++++. ...|.+|+.... .....  . ..........++|+|++++++ +...++.|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998887653 457888876543 22211  1 112235789999999999886 5556889999998765


Q ss_pred             ceeeeeccccc-----------cccccccccceecccCcccceeeee
Q psy18074        110 EKLGYVNNKQR-----------QALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       110 ~~~~~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      ...........           ............+.++|||++|..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            43221111000           0000111234567899999998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=3e-05  Score=52.97  Aligned_cols=142  Identities=7%  Similarity=-0.049  Sum_probs=86.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      +++++++....+.+.+++... ....... .......++++++++..+++-..+..+..++.......... ........
T Consensus        67 ~g~i~v~d~~~~~i~~~~~~~-~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~  143 (260)
T d1rwia_          67 AGTVYVTDFNNRVVTLAAGSN-NQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPD  143 (260)
T ss_dssp             TCCEEEEETTTEEEEECTTCS-CCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC-CCSCCSCC
T ss_pred             CCCEEEeeeeeceeeeeeecc-ceeeeee-eeeeecccccccccceeEeeccccccccccccccceeeeee-ecccCCcc
Confidence            466676666655555554332 2222222 22356789999999988777666677777776554322211 12224567


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc-ceEEee
Q psy18074         82 HTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV-PRHIYN  154 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~i~~  154 (197)
                      .++++|+++.+++...++.|..++...............        ....+++.++|++.++.... .+..+.
T Consensus       144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT--------APWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC--------SEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             eeeecCCCCEeeeccccccccccccccceeeeeeccccC--------CCccceeeeeeeeeeeecCCCEEEEEe
Confidence            899999999888888888899999775433221111111        13678888888877766544 334343

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=4.4e-06  Score=57.31  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCCcee
Q psy18074         41 DYSPT--GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASD-E-----MNLRVWKAHASEKL  112 (197)
Q Consensus        41 ~~sp~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~~~  112 (197)
                      .++|+  |..++..+ ++.|++.|+..+.....  ..+...+...+|||||++|+.... +     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~L--t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKI--VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEE--ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEE--ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99888765 56799999998876544  334467889999999999985432 2     24777788777654


Q ss_pred             eeeccccccccccccccceecccCcccceeeee
Q psy18074        113 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARH  145 (197)
Q Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  145 (197)
                      .........  ...........|+|+|+.|+..
T Consensus        82 ~lt~~~~~~--~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          82 RITYFSGKS--TGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ECCCCCEEE--ETTEECSEEEEECTTCCEEEEE
T ss_pred             EeeecCCCc--cCccccccccccCCCCCEEEEE
Confidence            322211110  0001123567899999998843

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.26  E-value=2.4e-05  Score=55.08  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             CeEEEEECCCCC----EE-EEEeCCCcEEEEECCCCcccc---ee---ecccccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy18074         36 AVTSVDYSPTGR----EF-VAGGYDKSLRLYLAHQGHSRD---IY---HTKRMQHVTHTVWSLDNKFVISASDEMNLRVW  104 (197)
Q Consensus        36 ~v~~~~~sp~~~----~l-~~~~~d~~v~i~d~~~~~~~~---~~---~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vw  104 (197)
                      ....++|+|++.    .| ++-+..+.|+.|++.....+.   .+   ..........+++.++|++.++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            446788988764    34 445677889988876432211   11   11122345689999999988888788999999


Q ss_pred             EcCCCceeeeeccccccccccccccceecccCcccceee
Q psy18074        105 KAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus       105 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      |...+..+..+.....        .+.+++|.||++.|.
T Consensus       253 dp~~g~~~~~i~~p~~--------~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFE--------KPSNLHFKPQTKTIF  283 (314)
T ss_dssp             CTTCBSCSEEEECSSS--------CEEEEEECTTSSEEE
T ss_pred             eCCCCEEEEEEECCCC--------CEEEEEEeCCCCEEE
Confidence            9887776555543322        147899999987554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.15  E-value=3.1e-05  Score=54.06  Aligned_cols=104  Identities=9%  Similarity=0.044  Sum_probs=72.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee-
Q psy18074         35 SAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-  113 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-  113 (197)
                      ..+..++++|||+.+++...++.|+.++.. +......  .....+.+++|+|+|+++++...++.+..|+........ 
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~--~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHA--TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE--ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEE--cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            357899999999999998889999888865 3332222  233678999999999998888888888888765433211 


Q ss_pred             eeccccccccccccccceecccCcccceeeeecC
Q psy18074        114 YVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ  147 (197)
Q Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  147 (197)
                      .+.....      ......+++.++++++++...
T Consensus       105 ~~~~~~~------~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1         105 TLLTLPD------AIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             EEEECTT------CSCEEEEEESSSSEEEEEETT
T ss_pred             eccccCC------ccccceeEEccCCCEEeeccc
Confidence            1111111      112467888899988776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.08  E-value=0.00026  Score=48.68  Aligned_cols=136  Identities=10%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             cCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCccccee-ecccccceeEEEEcc
Q psy18074         10 NEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY-HTKRMQHVTHTVWSL   87 (197)
Q Consensus        10 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~   87 (197)
                      +.++.|..++..  +.....+. ........+++.+++..+++....+.+.+++.. +..+..+ ...+......+++.+
T Consensus        90 ~~~~~i~~~~~~--g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_          90 SPTHQIQIYNQY--GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             GGGCEEEEECTT--SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             CCcccccccccc--ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc
Confidence            344455556554  34444432 234567889999999988887777888888765 3433333 233446788899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCc--ceEEeec
Q psy18074         88 DNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV--PRHIYNA  155 (197)
Q Consensus        88 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~~  155 (197)
                      +++.+++....+.|.+||.. ++.+..+.....      ......+++.++|+.+++....  .+.+|+.
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~------~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGI------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTT------SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ceeEEeeeccccceeeeecC-Cceeeeeccccc------ccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            99988888888999999975 555555532111      1124678899999877764432  3566653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=6e-05  Score=51.40  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC-C-----CcEEEEECCCCcccceeec--
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY-D-----KSLRLYLAHQGHSRDIYHT--   74 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d-----~~v~i~d~~~~~~~~~~~~--   74 (197)
                      |..++-.+ ++.|+++|+.. +. .+.+..+.+.+....|||||+.|+.... +     ..|++++...+........  
T Consensus        12 G~~v~f~~-~~dl~~~d~~~-g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~   88 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKS-GS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG   88 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTT-CC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred             CCEEEEEe-CCcEEEEECCC-CC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence            55555433 45788889985 33 4556667788899999999999986532 2     2477888887765443211  


Q ss_pred             ---ccccceeEEEEccCCCEEEEE
Q psy18074         75 ---KRMQHVTHTVWSLDNKFVISA   95 (197)
Q Consensus        75 ---~~~~~v~~v~~~~~~~~l~~~   95 (197)
                         ........++|+|+|+.++..
T Consensus        89 ~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          89 KSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEETTEECSEEEEECTTCCEEEEE
T ss_pred             CccCccccccccccCCCCCEEEEE
Confidence               112345678899999998864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=59.37  Aligned_cols=110  Identities=7%  Similarity=-0.057  Sum_probs=73.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcccceeec--ccccceeEEEEccCCCEEEEEe---------CCCcEEEEEcCC
Q psy18074         40 VDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT--KRMQHVTHTVWSLDNKFVISAS---------DEMNLRVWKAHA  108 (197)
Q Consensus        40 ~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~---------~dg~i~vwd~~~  108 (197)
                      ..|.+++.+++ -..+|.+.+||+.++.....+..  .....+....||||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46888876554 45678899999998865433311  1223567888999999988653         357789999988


Q ss_pred             CceeeeeccccccccccccccceecccCcccceeeeecCcceEEeecc
Q psy18074        109 SEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQ  156 (197)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~~~~  156 (197)
                      +............      ..+....|||||+.||-..+..+.+.+..
T Consensus       101 ~~~~~l~~~~~~~------~~l~~~~wSPDG~~iafv~~~nl~~~~~~  142 (465)
T d1xfda1         101 GDPQSLDPPEVSN------AKLQYAGWGPKGQQLIFIFENNIYYCAHV  142 (465)
T ss_dssp             CCCEECCCTTCCS------CCCSBCCBCSSTTCEEEEETTEEEEESSS
T ss_pred             CceeeccCccCCc------cccceeeeccCCceEEEEecceEEEEecC
Confidence            7654322211111      12356889999999997776666665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.87  E-value=0.00091  Score=46.83  Aligned_cols=106  Identities=8%  Similarity=0.033  Sum_probs=69.5

Q ss_pred             CCeEEEEECCCCCEEE-EEeCCCcEEEEECCCC-ccccee------ecccccceeEEEEccCCCEEEEEeCCCcEEEEEc
Q psy18074         35 SAVTSVDYSPTGREFV-AGGYDKSLRLYLAHQG-HSRDIY------HTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKA  106 (197)
Q Consensus        35 ~~v~~~~~sp~~~~l~-~~~~d~~v~i~d~~~~-~~~~~~------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~  106 (197)
                      .....++|+|+++.|+ +-+..+.|+.|++... ......      ..........+++.++|++.++....+.|.+||.
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            4567899999998665 4466789999998643 211111      1111134678999999998888888999999996


Q ss_pred             CCCceeeeeccccccccccccccceecccCcccceee
Q psy18074        107 HASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                       .|+.+..+.......  .....+.+++|.+++..+.
T Consensus       257 -~G~~l~~i~~P~~~~--~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         257 -RGYPIGQILIPGRDE--GHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             -TSCEEEEEECTTGGG--TCSCBCCEEEECTTSCEEE
T ss_pred             -CCcEEEEEeCCCcCC--CcCceeeeEEEeCCCCEEE
Confidence             577776654332210  1112357888988766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.84  E-value=0.00093  Score=46.28  Aligned_cols=138  Identities=7%  Similarity=-0.037  Sum_probs=84.0

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeec---cccc
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT---KRMQ   78 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~   78 (197)
                      ++.++.+--..+.|+.||+.+. . ...+ .....+.++++.++|..+++ +.+ .+.++|..+++.......   ....
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g-~-~~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~  103 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASG-R-KTVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGN  103 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTT-E-EEEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTE
T ss_pred             CCEEEEEECCCCEEEEEECCCC-e-EEEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcc
Confidence            3455555555677888887752 2 3333 23567889999888876664 444 488999998875443211   1123


Q ss_pred             ceeEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeccccccccccccccceecccCcccceeeeecCcceEEe
Q psy18074         79 HVTHTVWSLDNKFVISASD----EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIY  153 (197)
Q Consensus        79 ~v~~v~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~i~  153 (197)
                      .++.+.+.|+|++.++...    .+.-.+|.+..++.........         ..+.++|+++++.+.........||
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---------~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---------IPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---------SEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---------CcceeeecCCCceEEEeecccceee
Confidence            5788999999998776532    2344566666665443332211         1367889999887664443333344

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.70  E-value=0.00065  Score=47.54  Aligned_cols=102  Identities=11%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             EEEEEcCCCcEEEEEccCCCCce-----eeccc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeeccccc
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPL-----NVHKD-MTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQ   78 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~   78 (197)
                      ++++-+..+.|+.||+...+...     ..+.. ..+..-.+++..+|+.+++....+.|.+||...+.....+.. +..
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~  268 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFE  268 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSS
T ss_pred             EEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCC
Confidence            56666777888888876423211     11221 123356899999999888877889999999887765554433 235


Q ss_pred             ceeEEEEccCCCEE-EEEeCCCcEEEEEcC
Q psy18074         79 HVTHTVWSLDNKFV-ISASDEMNLRVWKAH  107 (197)
Q Consensus        79 ~v~~v~~~~~~~~l-~~~~~dg~i~vwd~~  107 (197)
                      .+++++|.|+++.| ++.+.+|.|...++.
T Consensus       269 ~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            78899999998755 566777888877764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.17  E-value=0.0056  Score=43.41  Aligned_cols=109  Identities=15%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             CccEEEEEcCCC-----------cEEEEEccCCC-Cceee-cccCCCCeEEEEECCCCCEEEEEeCC-CcEEEEECCCCc
Q psy18074          2 EAFVFTAANEDF-----------NLYSYDIRQLN-SPLNV-HKDMTSAVTSVDYSPTGREFVAGGYD-KSLRLYLAHQGH   67 (197)
Q Consensus         2 ~~~~l~~~~~d~-----------~i~i~d~~~~~-~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d-~~v~i~d~~~~~   67 (197)
                      +|++++.|+.+.           .+.+||+.+.. ..... ...+.......++.+++..++.|+.+ ..+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            678888877431           26789987521 11111 12233344566788999998888655 589999998765


Q ss_pred             ccceeecccccceeEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q psy18074         68 SRDIYHTKRMQHVTHTVWSLDNKFVISASDE------MNLRVWKAHASE  110 (197)
Q Consensus        68 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------g~i~vwd~~~~~  110 (197)
                      -...........-...+..+||+.++.++..      ..+.+||..+.+
T Consensus       110 w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         110 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            4322211111233466777899998887643      358899987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.15  E-value=0.017  Score=39.68  Aligned_cols=100  Identities=13%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccC-----CCCeEEEEECCCCCEEEEEeC----CCcEEEEECCCCccccee
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDM-----TSAVTSVDYSPTGREFVAGGY----DKSLRLYLAHQGHSRDIY   72 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~----d~~v~i~d~~~~~~~~~~   72 (197)
                      +|.++++. .+ .+..+|..+ ++ ...+...     ...+..+.+.|+|...++...    .+.-.+|.+..+......
T Consensus        69 dg~l~va~-~~-gl~~~d~~t-g~-~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~  144 (295)
T d2ghsa1          69 DSKQLIAS-DD-GLFLRDTAT-GV-LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF  144 (295)
T ss_dssp             TTEEEEEE-TT-EEEEEETTT-CC-EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEE-eC-ccEEeeccc-ce-eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe
Confidence            45556554 44 488899875 33 2222111     124789999999997766432    234566766666654443


Q ss_pred             ecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcC
Q psy18074         73 HTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAH  107 (197)
Q Consensus        73 ~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~  107 (197)
                      ..  ....+.++|+++++.++ +-+..+.|..+++.
T Consensus       145 ~~--~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         145 AD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             ec--cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence            22  24568999999998765 55667888888874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.14  E-value=0.023  Score=41.11  Aligned_cols=157  Identities=6%  Similarity=0.014  Sum_probs=88.7

Q ss_pred             CccEEEEE-cCCCcEEEEEccCCCCceeecc-cCCCCeEEEEECC--CCCEEEEEeCC------------------CcEE
Q psy18074          2 EAFVFTAA-NEDFNLYSYDIRQLNSPLNVHK-DMTSAVTSVDYSP--TGREFVAGGYD------------------KSLR   59 (197)
Q Consensus         2 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~~~~~d------------------~~v~   59 (197)
                      ||+++.+. ..++.|-+-|++.. +..+.+. .....+..+...+  +..+++..+.+                  +.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~f-kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcce-eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            67777665 46778999999863 4433222 2234556666654  44566665542                  2356


Q ss_pred             EEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCC---------------cEEEEEcCC-------Cc-----ee
Q psy18074         60 LYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM---------------NLRVWKAHA-------SE-----KL  112 (197)
Q Consensus        60 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---------------~i~vwd~~~-------~~-----~~  112 (197)
                      .+|..+.+........  .....++++++|+++++.+.+.               .+.+++...       |+     ..
T Consensus       177 ~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7788877765554333  4566889999999998765431               133333210       00     00


Q ss_pred             eeecccc---cccc--ccccccceecccCcccceeeeecCc--ceEEeecchhhHH
Q psy18074        113 GYVNNKQ---RQAL--DYSESLKQKYAHHPQIRRIARHRQV--PRHIYNAQAEHRA  161 (197)
Q Consensus       113 ~~~~~~~---~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~--~~~i~~~~~~~~~  161 (197)
                      ..+....   ...+  ..-......+..+|||+++..+...  .+.+++..+....
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~  310 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  310 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh
Confidence            1111110   0000  0011224688899999999866543  6799998776544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.72  E-value=0.021  Score=43.08  Aligned_cols=61  Identities=11%  Similarity=0.013  Sum_probs=41.8

Q ss_pred             cEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         57 SLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        57 ~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      .+.-||+.+++.+.....+  .+...-..+..|.+++.|+.||.++.+|..+|+.+..+....
T Consensus       458 ~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            4666777777766655332  122222233467788889999999999999999998876543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.014  Score=44.15  Aligned_cols=79  Identities=10%  Similarity=0.054  Sum_probs=52.9

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      |.|.-+|+.+|+.......+  .++..-..+..+.+++.|+.||.++-+|..+|+.+..+.......       -..+.|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~-------~~P~ty  536 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV-------SPPITW  536 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-------SCCEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcc-------ccCEEE
Confidence            46777888888877765333  223322234567788889999999999999999998876544321       123556


Q ss_pred             Cccc-ceee
Q psy18074        136 HPQI-RRIA  143 (197)
Q Consensus       136 s~~~-~~l~  143 (197)
                      ..+| ++|+
T Consensus       537 ~~~G~qYv~  545 (582)
T d1flga_         537 EQDGEQYLG  545 (582)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            6677 4555

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.47  E-value=0.023  Score=42.83  Aligned_cols=62  Identities=11%  Similarity=0.061  Sum_probs=43.9

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      |.+.-+|+.+++.......+  ....+-.+.-.+.+++.++.||.++-+|..+|+.+..+....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~  499 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence            45777888888877665332  222222234456778889999999999999999998876543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.30  E-value=0.027  Score=42.50  Aligned_cols=79  Identities=10%  Similarity=-0.018  Sum_probs=49.7

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeccccccccccccccceeccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAH  135 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  135 (197)
                      |.|.-+|+.+|+........  ....+-.+...+.+++.++.||.++-+|..+|+.+..+.......       -..+.|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~-------a~P~ty  514 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI-------GSPMTY  514 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-------SCCEEE
T ss_pred             ccEEEeccCCCceeeEcCCC--CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce-------ecceEE
Confidence            35667788888776655332  111111123346677789999999999999999998776543321       133555


Q ss_pred             Ccccc-eee
Q psy18074        136 HPQIR-RIA  143 (197)
Q Consensus       136 s~~~~-~l~  143 (197)
                      ..||+ +|+
T Consensus       515 ~~dGkqYi~  523 (571)
T d2ad6a1         515 SFKGKQYIG  523 (571)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            56764 554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.29  E-value=0.057  Score=37.95  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=67.4

Q ss_pred             EEEEECCCCCEEEEEeCCC-----------cEEEEECCCCcccce--eecccccceeEEEEccCCCEEEEEeCC-CcEEE
Q psy18074         38 TSVDYSPTGREFVAGGYDK-----------SLRLYLAHQGHSRDI--YHTKRMQHVTHTVWSLDNKFVISASDE-MNLRV  103 (197)
Q Consensus        38 ~~~~~sp~~~~l~~~~~d~-----------~v~i~d~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~i~v  103 (197)
                      .......+|+.++.|+.+.           .+.+||..++.-...  ....+.......++.++|++++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344455788788777421           367899998764322  223333444567788999999988655 57999


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCcccceeeeecC-------cceEEeecchh
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQ-------VPRHIYNAQAE  158 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~~~i~~~~~~  158 (197)
                      ||..+..-...-......       .-...+..+||+.++.+..       ..+.+|+....
T Consensus       103 yd~~~~~w~~~~~~~~~r-------~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVAR-------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEGGGTEEEECCCCSSCC-------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCccCcccccccccccc-------cccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            998865433211111111       0134556678888876542       23566766543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.19  E-value=0.05  Score=39.34  Aligned_cols=100  Identities=10%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CeEEEEECCCCCEEEEE-eCC----CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCC------------
Q psy18074         36 AVTSVDYSPTGREFVAG-GYD----KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE------------   98 (197)
Q Consensus        36 ~v~~~~~sp~~~~l~~~-~~d----~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------------   98 (197)
                      .+..+++||++++++.+ +.+    ..++++|+.+++.+......  .....++|.+|++.|+-...+            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            35567889999988753 222    38999999999865432111  223578899999988643322            


Q ss_pred             ----CcEEEEEcCCCceeee--eccccccccccccccceecccCcccceee
Q psy18074         99 ----MNLRVWKAHASEKLGY--VNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        99 ----g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                          ..+..|.+.+......  +......      .....+..+.+++++.
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~------~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEP------KWMGGAELSDDGRYVL  248 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCT------TCEEEEEECTTSCEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCC------ceEEeeeccCCcceee
Confidence                2477777766543322  2211111      1134556788888875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.17  E-value=0.17  Score=38.24  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=42.7

Q ss_pred             CcEEEEECCCCcccceeecccccceeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeecccc
Q psy18074         56 KSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGYVNNKQ  119 (197)
Q Consensus        56 ~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  119 (197)
                      |.|.-||+.+++........  ....+-.++..|.+++.|+.||.++-+|..+|+.+..+....
T Consensus       453 G~l~A~D~~TG~~~W~~~~~--~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceEEEEeCCCCceecccCCC--CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence            45777788888766554222  222222233457788889999999999999999998876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.88  E-value=0.43  Score=34.42  Aligned_cols=93  Identities=8%  Similarity=-0.039  Sum_probs=61.0

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCcccceeecccccceeEEEEcc--CCCEEEEEeCC------------------CcEEE
Q psy18074         45 TGREFVAGG-YDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL--DNKFVISASDE------------------MNLRV  103 (197)
Q Consensus        45 ~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~d------------------g~i~v  103 (197)
                      ||++++... .+..|.+-|+.+-+.......+....+..++..+  +-.|++..+.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            567766544 6778999999888765544333345666666654  45577665542                  23667


Q ss_pred             EEcCCCceeeeeccccccccccccccceecccCcccceeeeec
Q psy18074        104 WKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHR  146 (197)
Q Consensus       104 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  146 (197)
                      +|..+++....+.....         ...+.+++||+++.+.+
T Consensus       178 ID~~tm~V~~QV~V~g~---------ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGN---------LDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EETTTTEEEEEEEESSC---------CCCEEECSSSSEEEEEE
T ss_pred             EecCCceEEEEeeeCCC---------hhccccCCCCCEEEEEe
Confidence            88888877665543332         35788999999888543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.83  E-value=0.043  Score=41.48  Aligned_cols=80  Identities=15%  Similarity=0.126  Sum_probs=49.7

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC-E
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-F   91 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~   91 (197)
                      |.|.-+|+.+ ++..-....+ .++.+-.++..+..+++|+.||.++-+|..+|+.+..+..+....-.-+.|..+|+ |
T Consensus       466 G~l~AiD~~T-G~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVS-GKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCC-CcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5677777776 3433333221 22221122346778888999999999999999999887554332223356667884 5


Q ss_pred             EEE
Q psy18074         92 VIS   94 (197)
Q Consensus        92 l~~   94 (197)
                      ++.
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.36  Score=32.23  Aligned_cols=106  Identities=7%  Similarity=-0.054  Sum_probs=67.0

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe--CCCcEEEEECCCCcccceeecccccce
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG--YDKSLRLYLAHQGHSRDIYHTKRMQHV   80 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v   80 (197)
                      ++++.+-...+.|.+.++.. ......+.........++++|...+++...  ..+.|.-.++......... ......+
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~-~~~~~~p  166 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TENIQWP  166 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-CSSCSCE
T ss_pred             ceEEEEecCCCEEEeEecCC-ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc-cccccee
Confidence            45666666777888888874 233333444456688999998666555433  3446666676543332222 2223567


Q ss_pred             eEEEEccCCCEEEEE-eCCCcEEEEEcCCCc
Q psy18074         81 THTVWSLDNKFVISA-SDEMNLRVWKAHASE  110 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~  110 (197)
                      ..+++.+.+..|+.+ ...+.|...++....
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            899999987777654 556788888886543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.95  E-value=0.25  Score=37.32  Aligned_cols=115  Identities=11%  Similarity=0.052  Sum_probs=65.9

Q ss_pred             CccEEEEEcCCCcEEEEEccCCCCceeecccCC-----------CCeEEEEECCC----CCEEEEEeCCCcEEEEECCCC
Q psy18074          2 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMT-----------SAVTSVDYSPT----GREFVAGGYDKSLRLYLAHQG   66 (197)
Q Consensus         2 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~v~~~~~sp~----~~~l~~~~~d~~v~i~d~~~~   66 (197)
                      +|.++++.+.++.+...|..+.++.+-.+....           ...+.+++.++    +..++.++.|+.|.-.|..+|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            455666666667788888642244444332110           01133444332    346888999999999999999


Q ss_pred             cccceeecccccceeEEEEcc--CCCEEEEEe------CCCcEEEEEcCCCceeeeec
Q psy18074         67 HSRDIYHTKRMQHVTHTVWSL--DNKFVISAS------DEMNLRVWKAHASEKLGYVN  116 (197)
Q Consensus        67 ~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~  116 (197)
                      +.+..+.......-..+.-.|  .+..++.+.      ..|.|+-+|+.+|+.+..+.
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            987765322100000111111  133344432      35889999999999998764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.57  Score=31.17  Aligned_cols=91  Identities=7%  Similarity=0.035  Sum_probs=56.5

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEECCCCcccceeeccccccee
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAG-GYDKSLRLYLAHQGHSRDIYHTKRMQHVT   81 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~   81 (197)
                      ..++.+-..++.|+..++.. ......+......+.++++..-+..|+.+ ...+.|.+.++......... ......+.
T Consensus        48 ~~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~p~  125 (263)
T d1npea_          48 KVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-DTGLVNPR  125 (263)
T ss_dssp             TEEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEE
T ss_pred             CEEEEEECCCCeEEEEEccc-CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-cccccCCc
Confidence            34555555566677777764 23333333333567889998766666544 45678999998765443332 22335688


Q ss_pred             EEEEccCCCEEEEE
Q psy18074         82 HTVWSLDNKFVISA   95 (197)
Q Consensus        82 ~v~~~~~~~~l~~~   95 (197)
                      .++++|...+++..
T Consensus       126 ~l~vdp~~g~ly~t  139 (263)
T d1npea_         126 GIVTDPVRGNLYWT  139 (263)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEecccCcEEEe
Confidence            99999987776643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.59  E-value=0.16  Score=38.03  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=47.7

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC-E
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-F   91 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~   91 (197)
                      |.+.-+|+.+ ++..-.... ..+..+-.+...+.+++.|+.||.++-+|..+|+.+..+..+....-.-+.|..+|+ |
T Consensus       438 G~l~A~D~~t-Gk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVK-QKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCC-CeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4567777776 333333221 112211122335677888999999999999999999887554322222345556775 5


Q ss_pred             EEE
Q psy18074         92 VIS   94 (197)
Q Consensus        92 l~~   94 (197)
                      |+.
T Consensus       516 v~v  518 (560)
T d1kv9a2         516 VAI  518 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.20  E-value=0.11  Score=39.08  Aligned_cols=79  Identities=16%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             CcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC-E
Q psy18074         13 FNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-F   91 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~   91 (197)
                      |.+.-||+.+ ++.+-..... .+..+-..+..+..+++|+.|+.++.||.++|+.+..+..+....-.-+.|..+|+ |
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCC-CceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4577788876 3443333221 11111122336778888999999999999999999887554221112244556775 4


Q ss_pred             EE
Q psy18074         92 VI   93 (197)
Q Consensus        92 l~   93 (197)
                      ++
T Consensus       535 v~  536 (573)
T d1kb0a2         535 VS  536 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.88  E-value=0.95  Score=31.37  Aligned_cols=137  Identities=7%  Similarity=0.010  Sum_probs=71.1

Q ss_pred             CCcEEEEEccCCCCceeecccCC-------CCeEEEEE--CCCCC-EEEEEe---CCCcEEEEECCCCc--ccc--eeec
Q psy18074         12 DFNLYSYDIRQLNSPLNVHKDMT-------SAVTSVDY--SPTGR-EFVAGG---YDKSLRLYLAHQGH--SRD--IYHT   74 (197)
Q Consensus        12 d~~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~--sp~~~-~l~~~~---~d~~v~i~d~~~~~--~~~--~~~~   74 (197)
                      .|.|.++|+.+.......+.-..       -....+.+  .++|. +|++..   ....|-+|++....  ...  ....
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            48899999875333232222111       12344443  45665 344443   34578888775432  211  1122


Q ss_pred             ccccceeEEEEccCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeccccccccccccccceecccCccc
Q psy18074         75 KRMQHVTHTVWSLDNKFVISASD---------------EMNLRVWKAHASEKLGYVNNKQRQALDYSESLKQKYAHHPQI  139 (197)
Q Consensus        75 ~~~~~v~~v~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  139 (197)
                      ......+.+++..++..++|-..               -+...+|....+.........         ...+.++++||+
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l---------~~pNGI~~s~d~  217 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGF---------DFANGINISPDG  217 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEE---------SSEEEEEECTTS
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCC---------CccceeEECCCC
Confidence            22356789999899988887321               122344444333322111111         124789999999


Q ss_pred             ceeeeecC--cceEEeecch
Q psy18074        140 RRIARHRQ--VPRHIYNAQA  157 (197)
Q Consensus       140 ~~l~~~~~--~~~~i~~~~~  157 (197)
                      ++|..+..  ..+..|++..
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECT
T ss_pred             CEEEEEeCCCCeEEEEEeCC
Confidence            87764443  3556666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.25  E-value=0.12  Score=38.80  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=36.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC-EEEE
Q psy18074         45 TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK-FVIS   94 (197)
Q Consensus        45 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~   94 (197)
                      .+..+++++.|+.++-+|.++|+.+..+..+......-+.|..+|+ |++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            4667888999999999999999999887555333333355666775 5543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=1  Score=29.87  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=61.3

Q ss_pred             EEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEe-CCCcEEEEECCCCc---ccceeecccccce
Q psy18074          5 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGG-YDKSLRLYLAHQGH---SRDIYHTKRMQHV   80 (197)
Q Consensus         5 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~i~d~~~~~---~~~~~~~~~~~~v   80 (197)
                      +|++..  ..|+.+++.. .... .+......+.+++|++....++-.. ..+.|+-.++....   ............+
T Consensus         4 Ll~s~~--~~I~~~~l~~-~~~~-~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           4 LFFTNR--HEVRKMTLDR-SEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEECB--SSEEEEETTS-CCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEECC--CeEEEEECCC-Ccce-eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            444443  3588899975 3333 3333456788999999888777654 45667666664321   1112212223457


Q ss_pred             eEEEEccCCCEEEEE-eCCCcEEEEEcCCCce
Q psy18074         81 THTVWSLDNKFVISA-SDEMNLRVWKAHASEK  111 (197)
Q Consensus        81 ~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~~  111 (197)
                      ..+++.+.+..|+.. ...+.|.+.++.....
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~  111 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  111 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceE
Confidence            788888766666644 5567899999875543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.42  E-value=1.5  Score=30.35  Aligned_cols=98  Identities=10%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             CCCcEEEEEccCCCCce---eecc-cCCCCeEEEEECCCCCEEEEEe--C-------------CCcEEEEECCCCcccce
Q psy18074         11 EDFNLYSYDIRQLNSPL---NVHK-DMTSAVTSVDYSPTGREFVAGG--Y-------------DKSLRLYLAHQGHSRDI   71 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~---~~~~-~~~~~v~~~~~sp~~~~l~~~~--~-------------d~~v~i~d~~~~~~~~~   71 (197)
                      ...+|.+|++...+..+   ..+. .......++.+..++..++|-.  .             -+...+|....+.....
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~  201 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV  201 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence            34567788876422211   1121 1124578888888888777721  1             12333444444433222


Q ss_pred             eecccccceeEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q psy18074         72 YHTKRMQHVTHTVWSLDNKFVI-SASDEMNLRVWKAHASE  110 (197)
Q Consensus        72 ~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~vwd~~~~~  110 (197)
                      .  ..-...+.++++|++++|+ +-+..+.|++|++....
T Consensus       202 ~--~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         202 A--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             E--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             c--CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            2  2235789999999998876 45667889999987543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.09  E-value=1.3  Score=29.25  Aligned_cols=107  Identities=4%  Similarity=-0.025  Sum_probs=64.2

Q ss_pred             ccEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEECCCCcccceeecccccc
Q psy18074          3 AFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGY---DKSLRLYLAHQGHSRDIYHTKRMQH   79 (197)
Q Consensus         3 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~   79 (197)
                      ++++.+-...+.|.+.++.. ......+......+..++++|...+++....   .+.|.-.++...... .+....-..
T Consensus        91 ~~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~  168 (263)
T d1npea_          91 RTIFWTDSQLDRIEVAKMDG-TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGL  168 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSC
T ss_pred             CeEEEeccCCCEEEEEecCC-ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccc
Confidence            45556666677788888874 2222223333467889999997776664432   223444455533322 222222356


Q ss_pred             eeEEEEccCCCEEEEE-eCCCcEEEEEcCCCce
Q psy18074         80 VTHTVWSLDNKFVISA-SDEMNLRVWKAHASEK  111 (197)
Q Consensus        80 v~~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~~  111 (197)
                      +..+++.+.++.|+.. ...+.|...++.....
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~  201 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence            7899999888777654 4567888888865443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.92  E-value=1.6  Score=29.83  Aligned_cols=113  Identities=9%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCC----CCeEEEEECCCCCEEEEEe-------CCCcEEEEECCCCccc---
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMT----SAVTSVDYSPTGREFVAGG-------YDKSLRLYLAHQGHSR---   69 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-------~d~~v~i~d~~~~~~~---   69 (197)
                      +.|+.-+ +..|+=|++.....|...+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+...   
T Consensus       114 ~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         114 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            3444443 34688999965457888777664    3577777788888876532       2356667766522100   


Q ss_pred             ---------------------------------ceeecc----------------------cccceeEEEEccCCCEEEE
Q psy18074         70 ---------------------------------DIYHTK----------------------RMQHVTHTVWSLDNKFVIS   94 (197)
Q Consensus        70 ---------------------------------~~~~~~----------------------~~~~v~~v~~~~~~~~l~~   94 (197)
                                                       ..+..+                      ..+..-++..++....++.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence                                             000000                      1233445666666667777


Q ss_pred             EeCCCcEEEEEcCCCceeeeecc
Q psy18074         95 ASDEMNLRVWKAHASEKLGYVNN  117 (197)
Q Consensus        95 ~~~dg~i~vwd~~~~~~~~~~~~  117 (197)
                      -+.-|.+++||+.++.++..-.-
T Consensus       273 iTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         273 ITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC
T ss_pred             EecCcEEEEEEcccccEEEEeec
Confidence            88899999999999998865443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.78  E-value=2  Score=30.86  Aligned_cols=60  Identities=7%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             ecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee-------cccccceeEEEEccC
Q psy18074         29 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH-------TKRMQHVTHTVWSLD   88 (197)
Q Consensus        29 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~~~v~~v~~~~~   88 (197)
                      .+...-...++|+|.|+++.|++--..|.|++++..++.......       .........++|+|+
T Consensus        21 ~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            333334577899999999988876557999999887765432221       112356788999995

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.98  E-value=0.68  Score=33.48  Aligned_cols=34  Identities=9%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q psy18074         78 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEK  111 (197)
Q Consensus        78 ~~v~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~  111 (197)
                      ...++++|.|+|+.+++-...|.|++++..++..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            5678999999999988876689999998777654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.67  E-value=2.5  Score=28.84  Aligned_cols=120  Identities=11%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             CCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceeecccccceeEEEEccCCC
Q psy18074         11 EDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNK   90 (197)
Q Consensus        11 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~   90 (197)
                      ...+|.+.|+.+...+.+.-..    .-+.-.+|....|+.-+ ...+.+||+++...+......  ..|..-.|-.+ +
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~-~  114 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISL-N  114 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEESSS-S
T ss_pred             CCceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC--CCcEEEEecCC-C
Confidence            3446888888764444433222    23456789888777655 568999999998877665333  57777888544 3


Q ss_pred             EEEEEeCCCcEEEEEcCCC-ceeeeeccccccccccccccceecccCcccceee
Q psy18074         91 FVISASDEMNLRVWKAHAS-EKLGYVNNKQRQALDYSESLKQKYAHHPQIRRIA  143 (197)
Q Consensus        91 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  143 (197)
                      .|+..+ +..|+-|++... .+...+..+..    ..+..|-....+++.+|++
T Consensus       115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~----L~~~QIInY~~d~~~kW~~  163 (327)
T d1utca2         115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS----LAGCQIINYRTDAKQKWLL  163 (327)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGG----GTTCEEEEEEECTTSCEEE
T ss_pred             EEEEEc-CCceEEEcccCCCCchhhhhhccc----ccCceEEEEEECCCCCEEE
Confidence            444333 457999999542 34444433332    1233455667778888876

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.65  E-value=2.9  Score=29.61  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=46.7

Q ss_pred             CcEEEEEccCCCCcee-ecccCCCCeEEEEECCCCCEEEEEeCC----------------CcEEEEECCCCccccee-ec
Q psy18074         13 FNLYSYDIRQLNSPLN-VHKDMTSAVTSVDYSPTGREFVAGGYD----------------KSLRLYLAHQGHSRDIY-HT   74 (197)
Q Consensus        13 ~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~-~~   74 (197)
                      ..|+++|+.+ ++.+. .+..  .....+.|++++..|+....+                ..|+.+.+.+....... ..
T Consensus       151 ~~l~v~Dl~t-g~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~  227 (430)
T d1qfma1         151 VTIKFMKVDG-AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (430)
T ss_dssp             EEEEEEETTT-TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             heeEEeccCc-ceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccc
Confidence            3478888886 33322 2221  122568899999987654322                26777887765443222 12


Q ss_pred             c--cccceeEEEEccCCCEEEE
Q psy18074         75 K--RMQHVTHTVWSLDNKFVIS   94 (197)
Q Consensus        75 ~--~~~~v~~v~~~~~~~~l~~   94 (197)
                      .  ....+..+..++++++++.
T Consensus       228 e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         228 FPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEE
T ss_pred             cccCCceEEeeeccCCcceeeE
Confidence            1  1234667778999999763

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.35  E-value=3  Score=29.33  Aligned_cols=87  Identities=9%  Similarity=0.042  Sum_probs=53.8

Q ss_pred             EEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEECCCCCEEEEEeCCCcEEEEECCCCcccceee----ccccccee
Q psy18074          6 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYH----TKRMQHVT   81 (197)
Q Consensus         6 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~v~   81 (197)
                      +++. .++.+..++..... ..........++..+.++|.  .++....++.+.++++..+.......    ..-.+.+.
T Consensus        99 l~v~-~~~~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          99 VLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEEE-eCCCEEEEEeeccc-cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            4443 34557777776432 22333334567888888874  56667778999999998875433210    11125677


Q ss_pred             EEEEccCCCEEEEEe
Q psy18074         82 HTVWSLDNKFVISAS   96 (197)
Q Consensus        82 ~v~~~~~~~~l~~~~   96 (197)
                      +++|++.|..++++.
T Consensus       175 ~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         175 AVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEEEeCCcEEEEEeC
Confidence            888887777777663

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=80.52  E-value=7  Score=27.05  Aligned_cols=100  Identities=13%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             cEEEEEcCCCcEEEEEccCCCCceeecccCCCCeEEEEEC------CCCCEEEEEe-CC-C--cEEEEECCCC-ccccee
Q psy18074          4 FVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYS------PTGREFVAGG-YD-K--SLRLYLAHQG-HSRDIY   72 (197)
Q Consensus         4 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s------p~~~~l~~~~-~d-~--~v~i~d~~~~-~~~~~~   72 (197)
                      .+++.....+-|++||+.  ++.+..+.  .+.+..+..-      ....-++.++ .+ +  .|.+|.+... ..+..+
T Consensus        41 SlI~gTdK~~Gl~vYdL~--G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE--GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             CEEEEEETTSCCEEEETT--CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cEEEEEcCcCCEEEEcCC--CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            345555555569999996  56666654  3555555543      2222344444 22 2  5777776421 111111


Q ss_pred             ec------ccccceeEEEE--ccC-CC-EEEEEeCCCcEEEEEcC
Q psy18074         73 HT------KRMQHVTHTVW--SLD-NK-FVISASDEMNLRVWKAH  107 (197)
Q Consensus        73 ~~------~~~~~v~~v~~--~~~-~~-~l~~~~~dg~i~vwd~~  107 (197)
                      ..      .....+..+|+  +|. |. +++....+|.+..|.+.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~  161 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELN  161 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEE
Confidence            00      11134778887  564 54 45577778999888763