Psyllid ID: psy18075
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 999 | 2.2.26 [Sep-21-2011] | |||||||
| P46060 | 587 | Ran GTPase-activating pro | yes | N/A | 0.550 | 0.936 | 0.407 | 2e-97 | |
| P46061 | 589 | Ran GTPase-activating pro | yes | N/A | 0.549 | 0.932 | 0.398 | 1e-93 | |
| O13066 | 580 | Ran GTPase-activating pro | N/A | N/A | 0.347 | 0.598 | 0.482 | 3e-90 | |
| Q9VIW3 | 596 | Ran GTPase-activating pro | yes | N/A | 0.365 | 0.612 | 0.455 | 4e-82 | |
| P34342 | 960 | Ran GTPase-activating pro | yes | N/A | 0.312 | 0.325 | 0.459 | 2e-66 | |
| P41391 | 386 | Ran GTPase-activating pro | yes | N/A | 0.320 | 0.829 | 0.35 | 7e-35 | |
| P11745 | 407 | Ran GTPase-activating pro | yes | N/A | 0.263 | 0.646 | 0.350 | 3e-29 | |
| Q7RTR2 | 1065 | Protein NLRC3 OS=Homo sap | no | N/A | 0.326 | 0.306 | 0.273 | 4e-16 | |
| Q5DU56 | 1064 | Protein NLRC3 OS=Mus musc | no | N/A | 0.233 | 0.218 | 0.289 | 7e-16 | |
| Q9LE82 | 535 | RAN GTPase-activating pro | yes | N/A | 0.278 | 0.519 | 0.248 | 2e-13 |
| >sp|P46060|RAGP1_HUMAN Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 357 bits (917), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 234/574 (40%), Positives = 337/574 (58%), Gaps = 24/574 (4%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+ LKL+ EDAK ++ I + L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR++TEIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV+G LL+SS CF L+ELKLNN G+GI G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALKVF+AGRNRLEN+GA LA F+ + TLE V MPQNGI H GITAL+ AF N L
Sbjct: 179 PLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDV 652
R +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL--VL 710
NL+ EI L + +AM +K +L++++++ N GEEG E+++++++ F MA L +
Sbjct: 299 NLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVLASLS 358
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSH-----N 765
+D++ E +E ++EE E E + + + + + Q ++ S N
Sbjct: 359 DDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPN 418
Query: 766 TSNQSHSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLLAI 824
T + +S V+ FLA PS LGP + L + + S+P E ++ A
Sbjct: 419 TGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDP-----EKVVSAF 473
Query: 825 MKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK 884
+KVSS+ T++ ++ + L ++ FN S+S +T LLVH+GL+K EDK
Sbjct: 474 LKVSSVFKDEATVR---MAVQDAVDALMQKAFN--SSSFNSNTFLTRLLVHMGLLKSEDK 528
Query: 885 SFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 918
K NL G + A+ + + P LLA
Sbjct: 529 -VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 561
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Homo sapiens (taxid: 9606) |
| >sp|P46061|RAGP1_MOUSE Ran GTPase-activating protein 1 OS=Mus musculus GN=Rangap1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 230/577 (39%), Positives = 333/577 (57%), Gaps = 28/577 (4%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+GLKL+ EDAK ++ I E L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+S CF L+ELKLNN G+GI G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 179 PLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDV 652
R +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAVRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV--- 709
NL+ EI L + +A+ +K +L++++++ N GEEG E+++++M SF MA L
Sbjct: 299 NLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDSFNMAKVLASLS 358
Query: 710 ---LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 766
ED++ E EE DEE E+E D + + + + S + ++
Sbjct: 359 DDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPPQRGSGEEPATPSRKILD 418
Query: 767 SNQSHSVSQLKQHSVTD---FLAAPSVSLFNSLGPNCAQLFLDEIN-SEPEDRYLESMLL 822
N L + TD FL+ PS LGP + L + + + S+P E ++
Sbjct: 419 PNSGEPAPVLSSPTPTDLSTFLSFPSPEKLLRLGPKVSVLIVQQTDTSDP-----EKVVS 473
Query: 823 AIMKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWAS-NSDKLSTVTNALLVHLGLIKC 881
A +KV+S+ +++ +++ + L ++ F+ +S NS+ T LL+H+GL+K
Sbjct: 474 AFLKVASVFRDDASVK---TAVLDAIDALMKKAFSCSSFNSN---TFLTRLLIHMGLLKS 527
Query: 882 EDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 918
EDK K +L+G + + + P LLA
Sbjct: 528 EDK-IKAIPSLHGPLMVLNHVVRQDYFPKALAPLLLA 563
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Required for postimplantation development. Mus musculus (taxid: 10090) |
| >sp|O13066|RAGP1_XENLA Ran GTPase-activating protein 1 OS=Xenopus laevis GN=rangap1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 242/352 (68%), Gaps = 5/352 (1%)
Query: 355 DDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGN 414
+D++ + L +V G+ LSF G+ LKL+ +DA+ ++ I E + L +L LEGN
Sbjct: 4 EDIAQLADCLAKANVGDGE----LSFKGKTLKLNTAQDAEEVIREIEEYEGLQALRLEGN 59
Query: 415 TLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDL 474
T+GV AAKAIA+ L + KR W DMFTGR++ EIP ALR LG+ L AGA+L ELDL
Sbjct: 60 TVGVEAAKAIAEVLQRKPDLKRCHWSDMFTGRLRPEIPTALRSLGDALITAGAQLTELDL 119
Query: 475 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP 534
SDNAFGP GV G LL+S CF L+ELKLNN G+GI G K+L+ AL +C++ S G P
Sbjct: 120 SDNAFGPDGVRGFEALLKSPTCFTLQELKLNNCGMGIGGGKILAAALTECHKKSSAHGKP 179
Query: 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 594
LALKVFIAGRNRLEN+GA L+ F+ + TLE V MPQNGI H GITAL+++F+ N L+
Sbjct: 180 LALKVFIAGRNRLENDGATALSEAFRLIGTLEEVHMPQNGINHAGITALAESFKANSLLK 239
Query: 595 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVN 653
+NLNDNT T KG + + +AL L + ++N GDCL++S GA +IA L + L+D+N
Sbjct: 240 VINLNDNTFTEKGGVAMAEALKTLRQVEVINFGDCLVRSKGAQAIASALKEGLHKLKDLN 299
Query: 654 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705
L+ EI + L +++++K+ L++++++ N GEEG E+++++++S MA
Sbjct: 300 LSYCEIKADAAVSLAESVEDKSDLEKLDLNGNCLGEEGCEQVQEILESINMA 351
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Xenopus laevis (taxid: 8355) |
| >sp|Q9VIW3|RAGP1_DROME Ran GTPase-activating protein OS=Drosophila melanogaster GN=RanGap PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 241/369 (65%), Gaps = 4/369 (1%)
Query: 366 SISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIA 425
S++ + GQ+ +SF + L + D + +VDA+N+ + LNL+GNTLGV AAKAI
Sbjct: 8 SMAAQLGQEQ-GISFENKVLSWNTAADVQDVVDALNKQTTVHYLNLDGNTLGVEAAKAIG 66
Query: 426 DALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVE 485
+ L +H F++ALWK+MFTGR+ +EIP+AL++LG L AGA+L LDLSDNA GP G+
Sbjct: 67 EGLKRHPEFRKALWKNMFTGRLISEIPEALKHLGAALIVAGAKLTVLDLSDNALGPNGMR 126
Query: 486 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545
GL +LLRS C++L+EL L N GLG G +LS+AL D + ++ K G PL L+VFI RN
Sbjct: 127 GLEELLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRN 186
Query: 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 605
RLE+ GA +A F+ LKT E + + QN IY G+ AL+++F+ N +LR LN+NDNT+
Sbjct: 187 RLEDAGATEMATAFQTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKS 246
Query: 606 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGG 664
+GA + +AL LP L ++ GDCL+K+ GA + L N LE ++L NEI+ GG
Sbjct: 247 EGAEKIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEVIDLGFNEINSDGG 306
Query: 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE 724
L LV AM NK KL+ +N+ N FGEEG E++ M AAA L+ + + ++ +DE
Sbjct: 307 LVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPTAAA--LQPFQHQEEEDLEDE 364
Query: 725 ESEEENDSD 733
++ D+D
Sbjct: 365 YQADKQDAD 373
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state (By similarity). Trans-acting factor necessary for meiotic distortion. Distortion is only seen in individuals that carry the SD tandem duplication and express an SD truncated protein. Binding of truncated SD product to the RSP locus initiates events that lead to sperm dysfunction. Drosophila melanogaster (taxid: 7227) |
| >sp|P34342|RGP2_CAEEL Ran GTPase-activating protein 2 OS=Caenorhabditis elegans GN=ran-2 PE=4 SV=3 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 192/320 (60%), Gaps = 8/320 (2%)
Query: 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRA 437
+SF + LKLD E A+ +V I + +L L GNTLG+ A IA AL H +R
Sbjct: 450 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 509
Query: 438 LWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCF 497
LW D+FTGR+K EIP L LG + AG ++ ELDLSDNAFGPIG + L DLL S F
Sbjct: 510 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 569
Query: 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP--LALKVFIAGRNRLENEGAKML 555
+LE LKLNNNGLGI G K ++K+L +C S G L LK FIAGRNRLEN GA L
Sbjct: 570 SLEVLKLNNNGLGIGG-KQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHAL 628
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
AA FK L+T+E ++ QNGI+ GI AL A + N+NLR+L L DNT+ KGA L + L
Sbjct: 629 AATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTL 688
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAMKN 673
P L +LNL DCL++ AG + I +L + L++V L NE++ L++
Sbjct: 689 ESWPKLEVLNLSDCLIRDAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSK 748
Query: 674 KTKLKQ---INVSENQFGEE 690
L +++ N FG+E
Sbjct: 749 FDGLTPKPVLHIHTNSFGDE 768
|
GTPase system comprising ran-1, ran-2 and ran-3 is essential in nucleocytoplasmic trafficking. Ran-2 is a GTPase activator for the nuclear RAS-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Required for correct chromosome alignment and segregation on the metaphase plate. Caenorhabditis elegans (taxid: 6239) |
| >sp|P41391|RNA1_SCHPO Ran GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 180/340 (52%), Gaps = 20/340 (5%)
Query: 376 TKLSFAGQGLKLD--NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEH 433
++ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 SRFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 434 FKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS 493
+ A + D+FTGR+K EIP+ALR L L + +L + LSDNAFGP E L D L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 494 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAK 553
LE L L+NNGLG +++AL + + K + +P L+ I GRNRLEN K
Sbjct: 121 HT--PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMK 177
Query: 554 MLAAVFKKLKTLERVEMPQNGIYHVGIT-ALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612
A F+ + L V+M QNGI GI L + + L+ L+L DNT T+ G+ L
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKA 670
AL P+L L L DCLL + GA+++ + +N L+ + L NEI LD V+
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRT 293
Query: 671 MKNKTKLKQ-----INVSENQFGEEG--VEEMEKLMKSFG 703
+K K + ++ N+F EE V+E+ ++ + G
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333
|
GTPase activator for the nuclear Ras-related regulatory protein spi1 (Ran), converting it to the putatively inactive GDP-bound state. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P11745|RNA1_YEAST Ran GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 11/274 (4%)
Query: 379 SFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRAL 438
S +G+ LKL +D K ++ + +K L+L GNT+G A++A+A ++++ + +L
Sbjct: 17 SISGKALKLTTSDDIKPYLEELAALKTCTKLDLSGNTIGTEASEALAKCIAENTQVRESL 76
Query: 439 ----WKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSS 494
+ D++T R+ E+ D+L++L L + L ++LSDNAFG +E L D + +
Sbjct: 77 VEVNFADLYTSRLVDEVVDSLKFLLPVLLKC-PHLEIVNLSDNAFGLRTIELLEDYIAHA 135
Query: 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 554
++ L L+NNG+G + + KAL ++ K P L+ FI GRNRLEN A
Sbjct: 136 V--NIKHLILSNNGMGPFAGERIGKALFHLAQNKKAASKPF-LETFICGRNRLENGSAVY 192
Query: 555 LAAVFKKL-KTLERVEMPQNGIYHVGI-TALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612
LA K + L+ V++ QNGI G+ T + + KNL L+L DNT T ++ L
Sbjct: 193 LALGLKSHSEGLKVVKLYQNGIRPKGVATLIHYGLQYLKNLEILDLQDNTFTKHASLILA 252
Query: 613 QALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD 645
+AL SL LNL DCLLK+AG+ + K T+
Sbjct: 253 KALPTWKDSLFELNLNDCLLKTAGSDEVFKVFTE 286
|
GTPase activator for the nuclear Ras-related regulatory protein GSP1 (Ran), converting it to the putatively inactive GDP-bound state. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 172/391 (43%), Gaps = 65/391 (16%)
Query: 350 TDKPNDDVSDILKKLESISVESGQDST--KLSFAGQGLKLDNKEDAKVIVDAINEVKVLV 407
T++ D V ++L SV SG+D K+S A ++ NK AK + ++ + L
Sbjct: 646 TNQFQDPVMELLG-----SVLSGKDCRIQKISLAEN--QISNK-GAKALARSLLVNRSLT 697
Query: 408 SLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGA 467
SL+L GN++G AKA+ADAL R L G T D R + L +
Sbjct: 698 SLDLRGNSIGPQGAKALADALK----INRTLTSLSLQG--NTVRDDGARSMAEALA-SNR 750
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH----- 522
L L L N+ GP+G + +AD L+ + +L+EL ++N +G G K L++AL
Sbjct: 751 TLSMLHLQKNSIGPMGAQRMADALKQN--RSLKELMFSSNSIGDGGAKALAEALKVNQGL 808
Query: 523 ---DCYESSKKEGSPLALKVFIAG----------RNRLENEGAKMLAAVFKKLKTLERVE 569
D +S + AL + N + EGA+ +A TL+ ++
Sbjct: 809 ESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALCANSTLKNLD 868
Query: 570 MPQNGIYHVGITALSDAFEENKNL----------------------------RHLNLNDN 601
+ N ++ G A++ A EN+ L L+L +N
Sbjct: 869 LTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSLDLQEN 928
Query: 602 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661
I GA + +AL +L L L + ++GA + + L N TLE ++L N I V
Sbjct: 929 AIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRGNAIGV 988
Query: 662 QGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692
G L A+K + L+++N+ EN G +G
Sbjct: 989 AGAKALANALKVNSSLRRLNLQENSLGMDGA 1019
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Homo sapiens (taxid: 9606) |
| >sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 123/269 (45%), Gaps = 36/269 (13%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLR------------------SSCCFA--------LEEL 502
L+ LDL N+ GP G + LAD L+ C A + L
Sbjct: 695 LITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAEALVSNQTISML 754
Query: 503 KLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 562
+L N +G+ G + ++ AL K+ S LK + N + + GA LA K
Sbjct: 755 QLQKNLIGLIGAQQMADAL-------KQNRS---LKALMFSSNTIGDRGAIALAEALKVN 804
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
+ LE +++ N I +G+T L A N+ L LNL +N+I+ +GA L QAL + +L
Sbjct: 805 QILENLDLQSNSISDMGVTVLMRALCSNQTLSSLNLRENSISPEGAQALTQALCRNNTLK 864
Query: 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINV 682
L+L LL GA +IA + +N +L ++L N I L +A++ L +++
Sbjct: 865 HLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTLDL 924
Query: 683 SENQFGEEGVEEMEKLMKSFGMAAALVLE 711
EN G+EG + +K AL L+
Sbjct: 925 QENAIGDEGASSVAGALKVNTTLIALYLQ 953
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Mus musculus (taxid: 10090) |
| >sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 138/350 (39%), Gaps = 72/350 (20%)
Query: 409 LNLEGNTLGVNAAKAIADALSK-HEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGA 467
+ + G AAK A LS + D GR + E + + + L+ G+
Sbjct: 152 IRFSNRSFGSEAAKFAASVLSSIKDQLTEVDLSDFVAGRPEAEALEVMNMFSSALE--GS 209
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L L+LSDNA G G+ A L+ S LEEL L N+G+ ++A+ + S
Sbjct: 210 KLRYLNLSDNALGEKGIRAFASLINSQ--HDLEELYLMNDGISEDA----ARAVRELLPS 263
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
+ K ++V N +EGA +A + ++ +LE I G AL++A
Sbjct: 264 TDK------IRVLQFHNNMTGDEGATAIAEIVRECPSLEDFRCSSTRIGSEGGVALAEAL 317
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQA-----------------------------LSKL 618
E +L+ L+L DN +G I L + L
Sbjct: 318 EHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEIYMSYLNLEDEGTEALSEALLKSA 377
Query: 619 PSLAIL-------------NLGDCL---------------LKSAGASSIAKYLTDNTTLE 650
PSL +L NL C+ LK G IAK + + L
Sbjct: 378 PSLEVLELAGNDITVKSTGNLAACIASKQSLAKLNLSENELKDEGTILIAKAVEGHDQLV 437
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 700
+V+L+ N I G L + + K K +N++ N EEG++E+ + K
Sbjct: 438 EVDLSTNMIRRAGARALAQTVVKKNTFKLLNINGNFISEEGIDEVNDMFK 487
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 999 | ||||||
| 91078814 | 534 | PREDICTED: similar to ran gtpase-activat | 0.346 | 0.647 | 0.632 | 1e-117 | |
| 242019857 | 588 | Ran GTPase-activating protein, putative | 0.553 | 0.940 | 0.416 | 1e-108 | |
| 332019511 | 583 | Ran GTPase-activating protein 1 [Acromyr | 0.544 | 0.933 | 0.441 | 1e-107 | |
| 157117093 | 583 | ran gtpase-activating protein [Aedes aeg | 0.499 | 0.855 | 0.425 | 1e-103 | |
| 328790127 | 598 | PREDICTED: ran GTPase-activating protein | 0.514 | 0.859 | 0.452 | 1e-102 | |
| 72003823 | 583 | Ran GTPase-activating protein [Aedes aeg | 0.499 | 0.855 | 0.424 | 1e-102 | |
| 350396997 | 595 | PREDICTED: ran GTPase-activating protein | 0.543 | 0.912 | 0.439 | 1e-102 | |
| 340716605 | 594 | PREDICTED: LOW QUALITY PROTEIN: ran GTPa | 0.522 | 0.878 | 0.442 | 1e-102 | |
| 380018240 | 598 | PREDICTED: LOW QUALITY PROTEIN: ran GTPa | 0.516 | 0.862 | 0.453 | 1e-101 | |
| 322796742 | 553 | hypothetical protein SINV_13014 [Solenop | 0.488 | 0.882 | 0.455 | 1e-101 |
| >gi|91078814|ref|XP_970649.1| PREDICTED: similar to ran gtpase-activating protein [Tribolium castaneum] gi|270003723|gb|EFA00171.1| hypothetical protein TcasGA2_TC002993 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/351 (63%), Positives = 265/351 (75%), Gaps = 5/351 (1%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
N +V D+ L+ V T ++FAGQ LKLD +DAK +++ I + L LNLEG
Sbjct: 3 NTNVDDLTSALQGTRV----SPTGVTFAGQSLKLDTVDDAKSVIEEIEKCTNLQFLNLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NTLGV A+K IA AL KH FKRALWKDMFTGRMKTEIP AL +LG+GL AGARL ELD
Sbjct: 59 NTLGVEASKGIAKALEKHPEFKRALWKDMFTGRMKTEIPKALEFLGSGLVTAGARLTELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533
+SDNAFGPIGVEGLA LLRSS C+ALEEL+LNNNGLGITG KLL+ AL DCY SSK+ G
Sbjct: 119 MSDNAFGPIGVEGLAALLRSSSCYALEELRLNNNGLGITGGKLLASALTDCYNSSKETGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PL LKVFIAGRNRLENEGAK LA VFK + TLE + MPQNGIYHVGI+ALS+AF +NKNL
Sbjct: 179 PLQLKVFIAGRNRLENEGAKALAEVFKMIGTLEEIAMPQNGIYHVGISALSEAFTQNKNL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-TDNTTLEDV 652
+ LNLNDNTI KGA + +AL L L +N GDCLLK+AGA S+A L T + LE++
Sbjct: 239 QILNLNDNTIGEKGAEAIAKALPHLQQLKEINFGDCLLKTAGAISLANVLKTGHANLEEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703
L NEI ++GGL LVKAM NK+KLK +N++ NQFGE+G +++E +K G
Sbjct: 299 TLGHNEIRLKGGLQLVKAMANKSKLKVLNLNGNQFGEDGRKQIETEIKQIG 349
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242019857|ref|XP_002430375.1| Ran GTPase-activating protein, putative [Pediculus humanus corporis] gi|212515499|gb|EEB17637.1| Ran GTPase-activating protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 241/578 (41%), Positives = 346/578 (59%), Gaps = 25/578 (4%)
Query: 370 ESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALS 429
++G + +SF G+ LKL+ + D + +V+ I E L LNLEGNT+GV+AAKAI+ AL
Sbjct: 6 QTGLQTQGVSFQGKSLKLNTENDCEEVVNKIKECTNLEFLNLEGNTVGVDAAKAISKALE 65
Query: 430 KHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLAD 489
KRA+WKDMFTGRMK EIP AL +LGNGL A A+L ELDLSDNAFGPIGV GL
Sbjct: 66 SKSELKRAIWKDMFTGRMKEEIPKALEFLGNGLTLANAQLTELDLSDNAFGPIGVSGLGS 125
Query: 490 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLEN 549
LL S C+ L+ LKLNNNGLGI+G K+L+KAL C+++S K+G L+LK+ GRNRLEN
Sbjct: 126 LLSSPACYQLQVLKLNNNGLGISGGKMLAKALLKCHKNSSKDGKALSLKLIQIGRNRLEN 185
Query: 550 EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI 609
GA LA VF+ L +LE + M QNGIYH GI ALS++F++N NLR ++LNDNTIT KGA
Sbjct: 186 AGAVALAEVFQTLGSLEEISMYQNGIYHEGIKALSESFKKNSNLRLIDLNDNTITLKGAK 245
Query: 610 PLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLV 668
+ AL L L +LN DCLL++ GA+ +A LT+ + LE++ L NEI ++ GL +
Sbjct: 246 HIANALPHLQKLKVLNFDDCLLRTDGATVLADALTEKHMNLEELYLGNNEIRIESGLAIA 305
Query: 669 KAMKNKTKLKQINVSENQFGEEGVEEM-EKLMKSFGMAAALVLEDDE---GECSDEEQDE 724
KA+KNK+++K++NV+ NQFG G ++ E+L K + + DDE G+ DE +D
Sbjct: 306 KAIKNKSQMKKLNVNGNQFGSVGTTKLKEELTKMEKIQVLETMSDDESFNGDDDDENRDS 365
Query: 725 ESEEENDSDAEGDNS--------------NLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 770
E+ +E + D + D N + + S ++ S S
Sbjct: 366 ENSQEEEDDDDDDEEEENGDGEGENENKVNNETKQNGFTFKKSFETQKPGGDSFILSLDG 425
Query: 771 HSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSL 830
S+ S+ F+ P+ F ++ N F++ Y E+ + ++K+SS
Sbjct: 426 LSIKARPTGSLKTFVDNPTEVNFKNITENQVNEFINSNQDNSVAFYTEAFIPLLVKISSF 485
Query: 831 VPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINY 890
S + ++ + + ++ LY+ LF+WAS L V N L V+ LIK EDKSFK+N+
Sbjct: 486 --SCSDNENVKNLSVKISQNLYKNLFDWASRKKCLPIVNNTLFVYFNLIKSEDKSFKVNW 543
Query: 891 NLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEKKS 928
+L GC A+ L + +P+ T+ +K + +KKS
Sbjct: 544 DLKGCFEALNLAISSGCVPNETQD----VLKALRDKKS 577
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332019511|gb|EGI59990.1| Ran GTPase-activating protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 258/584 (44%), Positives = 356/584 (60%), Gaps = 40/584 (6%)
Query: 357 VSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTL 416
+ +I ++L+ +S + S +SFAGQ L LD +DA +V+AI L L+LEGNTL
Sbjct: 4 LGEIGEQLKDVS----RQSVGVSFAGQSLVLDTADDALRVVEAIKACPCLEYLDLEGNTL 59
Query: 417 GVNAAKAIADALS-KHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLS 475
G AA+ IA+AL K K+ALWKDMFTGR+KTEIP AL YLG L A ++L ELDLS
Sbjct: 60 GTPAAEVIAEALKEKGTPLKKALWKDMFTGRLKTEIPKALEYLGTALCTASSQLTELDLS 119
Query: 476 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPL 535
DNAFGPIG+EGLA+LL SS C+ L++LKLNNNGLGI+G K+L+KAL CYE+S EG+P
Sbjct: 120 DNAFGPIGIEGLANLLASSPCYTLQQLKLNNNGLGISGGKMLAKALEKCYENSSSEGTPF 179
Query: 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 595
ALKVFI GRNRLENEGA+ LA+VF++LKTLE V M QNGIYHVGI A++ N NLR
Sbjct: 180 ALKVFIVGRNRLENEGAQALASVFERLKTLEEVVMQQNGIYHVGIAAIAKGLSVNPNLRV 239
Query: 596 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT---DNTTLEDV 652
LNLNDNTI KGA L +AL L LNLGDCLLK+ GA IA+ L ++T+L ++
Sbjct: 240 LNLNDNTIGLKGAKALAKALPTFRGLEELNLGDCLLKTKGALVIAEALQIHGNHTSLRNL 299
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLE 711
+L+ NE+ + G + KAM +KT L + + N FG EG E++ +++ AL L
Sbjct: 300 DLSNNELRMDAGNAIAKAMHDKTLLTNLELDGNCFGTEGREKLRQILTKLRKIDALNSLN 359
Query: 712 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSH 771
+D E +EE D E E+ + + + + +S D N Q++ N
Sbjct: 360 EDYTEDEEEEDDNEDEQSEEDENDNNEDEVSDKD-------------NEEQNNIARNTVM 406
Query: 772 SVSQLKQHSVTD---FLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVS 828
+V++ + + + L +V F N A S+ E +Y+E +L MKVS
Sbjct: 407 TVAKFVKSPIGEKLLLLQGDNVQAFIDYATNLAN------KSKTEQKYIEELLRITMKVS 460
Query: 829 SLVPS-TTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK-SF 886
+L S ++ + SL + LY +LF++A ++++S NALLV+LGLIK EDK S
Sbjct: 461 ALCDSGYMNVRIKAESL---SDALYAKLFSYAVETNQISNFNNALLVNLGLIKSEDKTSG 517
Query: 887 KINYNLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEKKSRA 930
I++NL GC A+ +++ + T S L K+ EK +A
Sbjct: 518 TIDWNLEGCFKALEKIAQRDYFLTQTRSML----KVFLEKPMKA 557
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157117093|ref|XP_001658696.1| ran gtpase-activating protein [Aedes aegypti] gi|108876187|gb|EAT40412.1| AAEL007858-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/566 (42%), Positives = 327/566 (57%), Gaps = 67/566 (11%)
Query: 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFK 435
T +SF G+ LK + + AK ++DAI+ L LNLEGNTLGV AAK IA AL KH K
Sbjct: 20 TGVSFLGKALKWETEAGAKELLDAIDACTGLHFLNLEGNTLGVEAAKGIAKALEKHPELK 79
Query: 436 RALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSC 495
ALWKD+FTGRMKTEIP AL+ +G G+ AGA+L LD SDNA GP G+ GL DLL+S+
Sbjct: 80 EALWKDLFTGRMKTEIPLALKAMGEGMIAAGAQLTVLDCSDNALGPNGMTGLVDLLKSAT 139
Query: 496 CFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 555
C+ L+ELKLNN GLGI G K+LSKAL C+ +S + G PL+LKVFIAGRNRLEN+GAK L
Sbjct: 140 CYTLQELKLNNCGLGIGGGKMLSKALLACHAASSELGKPLSLKVFIAGRNRLENDGAKAL 199
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A VF K++TLE +EMPQNGIYHVGITALS+AF+EN NL+ LNLNDNTI KGA + A+
Sbjct: 200 AEVFGKVRTLEHIEMPQNGIYHVGITALSEAFKENGNLKVLNLNDNTIGPKGAAAIADAI 259
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNK 674
L L +N GDCLLK+ GA + + L + +T +E +N NEI +GG + A NK
Sbjct: 260 YDLQCLREINFGDCLLKTKGAMLLGEALQEAHTDIEVLNFGFNEIGPEGGFAIANATYNK 319
Query: 675 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-------------------------- 708
LK + + NQFG E E++ + + + AL
Sbjct: 320 DNLKSLILDGNQFGYECREQLRETLTQYDRLEALGSLDDDDSEGEEEDDEDEEDEEDIEE 379
Query: 709 -------------VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQ 755
E D GE EQD + N + AE NL ++N S +Q
Sbjct: 380 EEEEEDDNEECEESDESDAGESDQAEQDGFQQSPNVT-AEPAIRNLLSENNNASTIDLDQ 438
Query: 756 SHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSL-GPNCAQLFLDEINSEPED 814
S N+ +++ Q+H PS ++F+SL N A+ F + + S PE+
Sbjct: 439 SLPNTVEAY---CQTHY---------------PSETMFHSLEESNKAEAFKEYLKSLPEE 480
Query: 815 RYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLV 874
YL + I+K+S + S E ++ L+ + + +A +++L ++ + LL+
Sbjct: 481 DYLVYVAFTILKLSE-------ISEKSKEALEVSEALFADAYEYAKANNRLKSLRDFLLI 533
Query: 875 HLGLIKCEDKSFKINYNLNGCMTAVR 900
LGL+K ED+SFK YN GC A++
Sbjct: 534 QLGLLKSEDRSFKPGYNTQGCRYALK 559
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328790127|ref|XP_395378.4| PREDICTED: ran GTPase-activating protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 244/539 (45%), Positives = 327/539 (60%), Gaps = 25/539 (4%)
Query: 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF-KR 436
+SFA + LKLD +EDA IV AI L L+LEGNTLG AAKA+A AL ++ KR
Sbjct: 25 VSFAKKSLKLDTEEDALEIVKAIRACTNLEYLDLEGNTLGPLAAKAVAQALEENGSLMKR 84
Query: 437 ALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCC 496
ALWKDMFTGR+K+EIP AL YLG+ L AG L ELDLSDNAFGPIG+EGLA+ L SS C
Sbjct: 85 ALWKDMFTGRLKSEIPKALEYLGSALCTAGTHLFELDLSDNAFGPIGIEGLANFLTSSSC 144
Query: 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS-PLALKVFIAGRNRLENEGAKML 555
+ L L+L+NNGLGI+G K+L+KAL DCY +S + GS PLALKVF+AGRNRLENEGAK L
Sbjct: 145 YTLRVLRLDNNGLGISGGKMLAKALLDCYNNSFEAGSPPLALKVFVAGRNRLENEGAKAL 204
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A+VF+KL +LE V MPQNGIYH GITAL++ N LR LNLNDNT+ KGA + +AL
Sbjct: 205 ASVFQKLTSLEEVAMPQNGIYHEGITALANGLSYNPGLRILNLNDNTVGLKGAQAIAKAL 264
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYL---TDNTTLEDVNLTCNEISVQGGLDLVKAMK 672
+L LNLGDCLLK+ G+ +A+ L +L ++NL+ NEI +G + AM
Sbjct: 265 PNFKNLEQLNLGDCLLKTRGSMVLAEALGVEGSYPSLTELNLSYNEIKTKGANPIALAMA 324
Query: 673 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 732
+K L + + N FG+EG + +L + + G S + DE +E+ +
Sbjct: 325 DKKHLATLQLDGNNFGKEGCTILRD---------SLTISERIGSLSTLDDDESDKEDREK 375
Query: 733 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPSVSL 792
D E + S + N+S N + + +T + + + SV DFL +P+
Sbjct: 376 DEEENEEENDEESDEKSDESENESKENRDINKDTIINGNIIRS--KISVIDFLKSPTGEN 433
Query: 793 FNSLGPNCAQLFL------DEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFE 846
L + Q F+ +S E +++E IMKVS+L ST+
Sbjct: 434 LLLLQDDIIQDFITYAKNSSNSDSSSELKFIEEYTRIIMKVSAL--STSGYVDVRLRAQN 491
Query: 847 CTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK-SFKINYNLNGCMTAVRLLSE 904
T LY +L +A +D++S NALLV+LGLIK EDK S KI++NL GC A+ ++S+
Sbjct: 492 LTDALYSKLCFFAIENDQVSIWNNALLVNLGLIKAEDKNSGKIDWNLEGCFKALEIVSQ 550
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|72003823|gb|AAZ65852.1| Ran GTPase-activating protein [Aedes aegypti] gi|77808099|gb|ABB03731.1| Ran GTPase-activating protein [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/566 (42%), Positives = 326/566 (57%), Gaps = 67/566 (11%)
Query: 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFK 435
T +SF G+ LK + + AK ++DAI+ L SLNLEGNTLGV AAK IA AL KH K
Sbjct: 20 TGVSFLGKALKWETEAGAKELLDAIDACTGLHSLNLEGNTLGVEAAKGIAKALEKHPELK 79
Query: 436 RALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSC 495
ALWKD+FTGRMKTEIP AL+ +G G+ AGA+L LD SDNA GP G+ GL DLL+S+
Sbjct: 80 EALWKDLFTGRMKTEIPLALKAMGEGMIAAGAQLTVLDCSDNALGPNGMTGLVDLLKSAT 139
Query: 496 CFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 555
C+ L+E KLNN GLGI G K+LSKAL C+ +S + G PL+LKVFIAGRNRLEN+GAK L
Sbjct: 140 CYTLQEPKLNNCGLGIGGGKMLSKALLACHAASSELGKPLSLKVFIAGRNRLENDGAKAL 199
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A VF K++TLE + MPQNGIYHVGITALS+AF+EN NL+ LNLNDNTI KGA + A+
Sbjct: 200 AEVFGKVRTLEHIGMPQNGIYHVGITALSEAFKENGNLKVLNLNDNTIGPKGAAAIADAI 259
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNK 674
L L +N GDCLLK+ GA + + L + +T +E +N NEI +GG + A NK
Sbjct: 260 YDLQCLREINFGDCLLKTKGAMLLGEALQEAHTDIEVLNFGFNEIGPEGGFAIANATYNK 319
Query: 675 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-------------------------- 708
LK + + NQFG E E++ + + + AL
Sbjct: 320 DNLKSLILDGNQFGYECREQLRETLTQYDRLEALGSLDDDDSEGEEEDDEDEEDEEDIEE 379
Query: 709 -------------VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQ 755
E D GE EQD + N + AE NL ++N S +Q
Sbjct: 380 EEEEEDDNEECEESDESDAGESDQAEQDGFQQSPNVT-AEPAIRNLLSENNNASTIDLDQ 438
Query: 756 SHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSL-GPNCAQLFLDEINSEPED 814
S N+ +++ Q+H PS ++F+SL N A+ F + + S PE+
Sbjct: 439 SLPNTVEAY---CQTHY---------------PSETMFHSLEESNKAEAFKEYLKSLPEE 480
Query: 815 RYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLV 874
YL + I+K+S + S E ++ L+ + + +A +++L ++ + LL+
Sbjct: 481 DYLVYVAFTILKLSE-------ISEKSKEALEVSEALFADAYEYAKANNRLKSLRDFLLI 533
Query: 875 HLGLIKCEDKSFKINYNLNGCMTAVR 900
LGL+K ED+SFK YN GC A++
Sbjct: 534 QLGLLKSEDRSFKPGYNTQGCRYALK 559
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350396997|ref|XP_003484734.1| PREDICTED: ran GTPase-activating protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 252/573 (43%), Positives = 348/573 (60%), Gaps = 30/573 (5%)
Query: 356 DVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT 415
++SD+ +L+ I+ E+ D+ +SFA + LKLD +EDA IV AI L L+LEGNT
Sbjct: 5 NLSDLEAQLQDIT-ENNADNG-VSFAKKSLKLDTEEDALEIVKAIRACTNLEYLDLEGNT 62
Query: 416 LGVNAAKAIADALSKHEHF-KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDL 474
LG AAKA+A AL ++ KRALWKDMFTGR+KTEIP AL YLG+ L AG RL ELDL
Sbjct: 63 LGPLAAKAVAQALQENGTLMKRALWKDMFTGRVKTEIPKALEYLGSALCIAGTRLFELDL 122
Query: 475 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP 534
SDNAFGPIG+EGLA+ L SS C+ L L+LNNNGLGI+G K+L+KAL DCY +S + GSP
Sbjct: 123 SDNAFGPIGIEGLANFLTSSSCYTLRVLRLNNNGLGISGGKILAKALLDCYNNSFQGGSP 182
Query: 535 -LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
LALKVF+AGRNRLEN+GAK LA+VF+KL +LE V MPQNGIY+ GI AL++ N L
Sbjct: 183 ALALKVFVAGRNRLENDGAKALASVFEKLTSLEEVVMPQNGIYYQGIIALANGLSSNPGL 242
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT---LE 650
R LNLNDNT+ KGA + +AL +L LNLGDCLLK+ GA +A+ L + L
Sbjct: 243 RILNLNDNTVGPKGAQAIAKALPNFQNLEQLNLGDCLLKTQGAVVLAEALGVEGSYPLLA 302
Query: 651 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 710
++NL+ NEI +G + AM K +L + + N FG+ G + +L++
Sbjct: 303 ELNLSYNEIRTRGANPIALAMAKKERLVTLQLDGNHFGQTGRTILRD---------SLII 353
Query: 711 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 770
+ G DE + E + + + + +++ + S N S ++ +N N+ T+
Sbjct: 354 SEKIGSLGTLNDDESEDNEESDEEDEEEDDEGNDEKDESENESKENIDN-NKDMITNG-- 410
Query: 771 HSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLF------LDEINSEPEDRYLESMLLAI 824
S+ Q K ++ +FL +P+ L + Q F L E ++ PE +++E I
Sbjct: 411 -SIVQPK-ITIVEFLKSPTGEKLLLLPDDVVQDFITHVKNLSENDASPELKFIEEFTRII 468
Query: 825 MKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK 884
MKVS+L STT T LY +L ++ + +D++S N LLV+LGLIK EDK
Sbjct: 469 MKVSAL--STTGYADVRLRTQYLTDALYSKLCSFVTENDQISVWNNTLLVNLGLIKAEDK 526
Query: 885 -SFKINYNLNGCMTAVRLLSEAKLLPSLTESQL 916
S KI++NL GC A+ +S+ T S L
Sbjct: 527 SSGKIDWNLEGCFKALETVSQKDYFLQETRSTL 559
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340716605|ref|XP_003396787.1| PREDICTED: LOW QUALITY PROTEIN: ran GTPase-activating protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 244/551 (44%), Positives = 323/551 (58%), Gaps = 29/551 (5%)
Query: 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF-KR 436
+SFA + LKLD +EDA IV AI L L+LEGNTLG AAKA+A AL ++ KR
Sbjct: 25 VSFAKKSLKLDTEEDALEIVKAIRACTNLEYLDLEGNTLGPLAAKAVAQALQENGTLMKR 84
Query: 437 ALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCC 496
ALWKDMFTGR+KTEIP AL YLG+ L AG RL ELDLSDNAFGPIG+EGLA+ L SS C
Sbjct: 85 ALWKDMFTGRVKTEIPKALEYLGSALCIAGTRLFELDLSDNAFGPIGIEGLANFLTSSSC 144
Query: 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP-LALKVFIAGRNRLENEGAKML 555
+ L L+LNNNGLGI+G K+L+KAL DCY +S + GSP LALKVF+AGRNRLEN+GAK L
Sbjct: 145 YTLRVLRLNNNGLGISGGKILAKALLDCYNNSFQGGSPALALKVFVAGRNRLENDGAKAL 204
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A+VF+KL +LE V MPQNGIY+ GI AL++ N LR LNLNDNT+ KGA + +AL
Sbjct: 205 ASVFEKLTSLEEVVMPQNGIYYEGIIALANGLSSNPGLRILNLNDNTVGPKGAQAIAKAL 264
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT---LEDVNLTCNEISVQGGLDLVKAMK 672
+L LNLGDCLLK+ G +A+ L + L ++NL+ NEI +G + AM
Sbjct: 265 PNFQNLEQLNLGDCLLKTQGGVVLAEALGVEGSYPLLAELNLSYNEIRTRGANPIALAMA 324
Query: 673 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 732
K +L + + N FG+ G + +L++ + G DE + E
Sbjct: 325 KKERLVTLQLDGNHFGQTGRTILRD---------SLIISERIGSLGTLNDDESGDNEESD 375
Query: 733 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHSVSQLKQHSVTDFLAAPSVSL 792
+ E +N S + + NN + N S V ++ +FL +P+
Sbjct: 376 EDEVENDEESDEKDESENESKENIDNNKDMIINGSIVPSKV------TIVEFLKSPTGEK 429
Query: 793 FNSLGPNCAQLF------LDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFE 846
L + Q F L E ++ PE +++E IMKVS+L STT
Sbjct: 430 LLLLPDDVVQDFITHAKNLSENDTSPELKFIEEFTRIIMKVSAL--STTGYADVRLRTQY 487
Query: 847 CTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK-SFKINYNLNGCMTAVRLLSEA 905
T LY +L ++ + +D++S N LLV+LGLIK EDK S KI++NL GC A+ +S+
Sbjct: 488 LTDALYSKLCSFVTENDQISVWNNTLLVNLGLIKAEDKSSGKIDWNLEGCFKALETVSQK 547
Query: 906 KLLPSLTESQL 916
T S L
Sbjct: 548 DYFLQETRSTL 558
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380018240|ref|XP_003693041.1| PREDICTED: LOW QUALITY PROTEIN: ran GTPase-activating protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 246/543 (45%), Positives = 331/543 (60%), Gaps = 27/543 (4%)
Query: 375 STKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF 434
S +SFA + LKLD +EDA IV AI L L+LEGNTLG AAKA+A AL ++
Sbjct: 22 SIGVSFAKKSLKLDTEEDALEIVKAIRACTNLEYLDLEGNTLGPLAAKAVAQALEENGSL 81
Query: 435 -KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS 493
KRALWKDMFTGR+K+EIP AL YLG+ L AG L ELDLSDNAFGPIG+EGLA+ L S
Sbjct: 82 MKRALWKDMFTGRLKSEIPKALEYLGSALCTAGTHLFELDLSDNAFGPIGIEGLANFLTS 141
Query: 494 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS-PLALKVFIAGRNRLENEGA 552
S C+ L L+L+NNGLGI+G K+L+KAL DCY +S + GS PLALKVF+AGRNRLENEGA
Sbjct: 142 SSCYTLRVLRLDNNGLGISGGKMLAKALLDCYNNSFEAGSPPLALKVFVAGRNRLENEGA 201
Query: 553 KMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612
K LA+VF+KL +LE V MPQNGIY+ GITAL++ N LR LNLNDNT+ KGA +
Sbjct: 202 KALASVFQKLTSLEEVAMPQNGIYYEGITALANGLSHNPGLRILNLNDNTVGLKGAQAIA 261
Query: 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYL---TDNTTLEDVNLTCNEISVQGGLDLVK 669
+AL +L LNLGDCLLK+ G+ +A+ L +L ++NL+ NEI +G +
Sbjct: 262 KALPXFKNLEQLNLGDCLLKTQGSMVLAEALGVEGSYPSLTELNLSYNEIKTKGANPIAL 321
Query: 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 729
AM +K L + + N FG+EG + +L + + G S + DE +E+
Sbjct: 322 AMADKKHLVTLQLDGNNFGKEGCTILRD---------SLTISERIGSLSTLDDDESDKED 372
Query: 730 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT-SNQSHSVSQLKQHSVTDFLAAP 788
D D E + S + N+S N + + +T N + + S++ SV DFL +P
Sbjct: 373 KDKDEEENEEENDEESDEKSDESENESKENRDINKDTIINGNITRSKI---SVIDFLKSP 429
Query: 789 SVSLFNSLGPNCAQLF------LDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSS 842
+ L + Q F L ++ E +++E IMKVS+L +T+
Sbjct: 430 TGENLLLLQDDIVQDFITYAKNLSNTDTSSELKFIEEYTRIIMKVSAL--NTSGYVDVRL 487
Query: 843 SLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK-SFKINYNLNGCMTAVRL 901
T LY +L +A +D++S NALLV+LGLIK EDK S KI++NL GC A+ +
Sbjct: 488 RAQNLTDALYSKLAFFAIENDQVSIWNNALLVNLGLIKAEDKNSGKIDWNLEGCFKALEI 547
Query: 902 LSE 904
+S+
Sbjct: 548 VSQ 550
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322796742|gb|EFZ19175.1| hypothetical protein SINV_13014 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 238/523 (45%), Positives = 329/523 (62%), Gaps = 35/523 (6%)
Query: 396 IVDAINEVKVLVSLNLEGNTLGVNAAKAIADALS-KHEHFKRALWKDMFTGRMKTEIPDA 454
+V+AI L L+LEGNTLG AA+ IA+AL K KRALWKDMFTGR+KTEIP A
Sbjct: 4 VVEAIKACPCLEYLDLEGNTLGTPAAEVIAEALKEKGTPLKRALWKDMFTGRLKTEIPKA 63
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
L YLG L AG++L ELDLSDNAFGPIG++GLA+LL SS C+AL++LKLNNNGLGI+G
Sbjct: 64 LEYLGTALCTAGSQLTELDLSDNAFGPIGIQGLANLLASSPCYALQQLKLNNNGLGISGG 123
Query: 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574
K+L+KAL C+E+S KEG+PLALKVFI GRNRLENEGA+ LA+VF+KLKTLE V M QNG
Sbjct: 124 KMLAKALEKCHENSSKEGTPLALKVFIVGRNRLENEGAQALASVFEKLKTLEEVVMQQNG 183
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
IYHVGI A++ N NLR LNLNDNTI KGA L + L L LNLGDCLLK+
Sbjct: 184 IYHVGIAAIAQGLSANPNLRVLNLNDNTIGLKGARALAKVLPIFRGLEELNLGDCLLKTK 243
Query: 635 GASSIAKYL---TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691
GA ++A+ L ++T+L ++L+CNE+ G + KA +KT L + + N FG EG
Sbjct: 244 GALALAEALEIHGNHTSLRYLDLSCNELRAPAGNAIAKATHDKTLLTNLQLDGNCFGTEG 303
Query: 692 VEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 751
E + +++ G AL + E + + + ND+ +
Sbjct: 304 RENLREILAKLGRLDAL------------------NSLEEDYTEDEEDDDNDNDNEDEQS 345
Query: 752 ASNQSHNNSNQSHNTSNQSH-SVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLD---- 806
++S NN +++ + N+ +++Q +V +F+ +P L + Q F+D
Sbjct: 346 GEDESDNNEDETSDKDNKEQDNIAQSVVVTVAEFVKSPIGEKLLLLQDDNVQAFIDYATN 405
Query: 807 ---EINSEPEDRYLESMLLAIMKVSSLVPS-TTTLQSPSSSLFECTKVLYRELFNWASNS 862
+ N+ + +Y+E +L MKVS+L S ++ + SL + LY +LF++A +
Sbjct: 406 LANQNNTTTKQKYIEELLRITMKVSALCGSGYINVRIKAESL---SDALYAKLFSYAVEN 462
Query: 863 DKLSTVTNALLVHLGLIKCEDK-SFKINYNLNGCMTAVRLLSE 904
D++S + NALLV+LGLIK EDK S KI++NL GC A+ +S+
Sbjct: 463 DQISNLNNALLVNLGLIKGEDKASGKIDWNLEGCFKALEKISQ 505
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 999 | ||||||
| UNIPROTKB|P46060 | 587 | RANGAP1 "Ran GTPase-activating | 0.351 | 0.597 | 0.474 | 5e-89 | |
| UNIPROTKB|F1MFD5 | 585 | RANGAP1 "Uncharacterized prote | 0.351 | 0.6 | 0.469 | 1.2e-87 | |
| UNIPROTKB|F1NIE8 | 579 | RANGAP1 "Uncharacterized prote | 0.351 | 0.606 | 0.463 | 2.1e-86 | |
| UNIPROTKB|F1PVY6 | 628 | RANGAP1 "Uncharacterized prote | 0.351 | 0.558 | 0.463 | 9.2e-86 | |
| UNIPROTKB|J9NZ28 | 641 | RANGAP1 "Uncharacterized prote | 0.351 | 0.547 | 0.463 | 9.2e-86 | |
| MGI|MGI:103071 | 589 | Rangap1 "RAN GTPase activating | 0.351 | 0.595 | 0.471 | 1.9e-85 | |
| UNIPROTKB|F1MAA5 | 586 | Rangap1 "Protein Rangap1" [Rat | 0.351 | 0.598 | 0.463 | 5.7e-84 | |
| UNIPROTKB|O13066 | 580 | rangap1 "Ran GTPase-activating | 0.350 | 0.603 | 0.456 | 1.2e-83 | |
| ZFIN|ZDB-GENE-040426-1921 | 577 | rangap1b "Ran GTPase activatin | 0.347 | 0.601 | 0.461 | 3.6e-82 | |
| RGD|1310380 | 431 | Rangap1 "RAN GTPase activating | 0.351 | 0.814 | 0.466 | 4.8e-78 |
| UNIPROTKB|P46060 RANGAP1 "Ran GTPase-activating protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
Identities = 169/356 (47%), Positives = 230/356 (64%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+ LKL+ EDAK ++ I + L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR++TEIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV+G LL+SS CF I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALKVF+AGRNRLEN+GA LA F+ + TLE V MPQNGI H GITAL+ AF N L
Sbjct: 179 PLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITALAQAFAVNPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAIRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +AM +K +L++++++ N GEEG E+++++++ F MA L
Sbjct: 299 NLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVL 354
|
|
| UNIPROTKB|F1MFD5 RANGAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 167/356 (46%), Positives = 231/356 (64%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+ LKL+ +DAK ++ I + L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKSLKLNTADDAKDVIKEIEDFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKPELKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+SS CF I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 179 PLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGAVAMAKTLKTLRQVEVINFGDCLVRSKGAIAIADAIHGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI + L + +A+ +KT+L++++++ N GEEG E+++++++ F MAA L
Sbjct: 299 NLSFGEIKREAALSVAEAVADKTELEKLDLNGNMLGEEGCEQLQEVLEGFNMAAVL 354
|
|
| UNIPROTKB|F1NIE8 RANGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 165/356 (46%), Positives = 229/356 (64%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF GQ LKL+ EDA+ ++ I E L +L LEG
Sbjct: 3 SEDIAKLAESLAKTKVGGGQ----LSFKGQSLKLNTAEDAEEVIKQIEEFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AAK IA AL K KR W DMFTGR+++EIP AL LG+ L AGA+LVELD
Sbjct: 59 NTVGVEAAKVIAKALEKKSELKRCHWSDMFTGRLRSEIPPALISLGDALITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+S C+ I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSPACYTLQELKLNNCGMGIGGGKILAAALKECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALK+F+AGRNRLEN+GA LA F + TLE V MPQNGI H GITAL+ AF N L
Sbjct: 179 PLALKIFMAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGITALAQAFAINSLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDV 652
+ +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA L + L+++
Sbjct: 239 KVINLNDNTFTEKGAVAMAETLKALRQVEVINFGDCLVRSKGALAIADALKEGLHKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A+++K +L++++++ N GEEG E+++++++ F MA L
Sbjct: 299 NLSFCEIKRDAALSVAEAIEDKVELEKLDLNGNSLGEEGCEQLQEILEGFNMATVL 354
|
|
| UNIPROTKB|F1PVY6 RANGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 165/356 (46%), Positives = 226/356 (63%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+ LKL+ EDAK ++ I + L +L LEG
Sbjct: 44 SEDIAKLAETLAKTQVAGGQ----LSFKGKSLKLNTAEDAKDVIKEIEDFDGLEALRLEG 99
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 100 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRSEIPPALTSLGEGLITAGAQLVELD 159
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+SS CF I G K+L+ AL +C+ S +G
Sbjct: 160 LSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 219
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 220 PLGLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 279
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KGA+ + + L L ++N GDCL++S GA +IA+ + L+++
Sbjct: 280 RVINLNDNTFTEKGAVAMAKTLKTLRQAEVINFGDCLVRSKGAVAIAEAVRGGLPKLKEL 339
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A+ +K +L++++++ N GEEG E++++++ F MA L
Sbjct: 340 NLSFCEIKRDAALAVAEAVADKAELEKLDLNGNMLGEEGCEQLQEVLDGFNMARVL 395
|
|
| UNIPROTKB|J9NZ28 RANGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 165/356 (46%), Positives = 226/356 (63%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+ LKL+ EDAK ++ I + L +L LEG
Sbjct: 57 SEDIAKLAETLAKTQVAGGQ----LSFKGKSLKLNTAEDAKDVIKEIEDFDGLEALRLEG 112
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 113 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRSEIPPALTSLGEGLITAGAQLVELD 172
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+SS CF I G K+L+ AL +C+ S +G
Sbjct: 173 LSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 232
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 233 PLGLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 292
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KGA+ + + L L ++N GDCL++S GA +IA+ + L+++
Sbjct: 293 RVINLNDNTFTEKGAVAMAKTLKTLRQAEVINFGDCLVRSKGAVAIAEAVRGGLPKLKEL 352
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A+ +K +L++++++ N GEEG E++++++ F MA L
Sbjct: 353 NLSFCEIKRDAALAVAEAVADKAELEKLDLNGNMLGEEGCEQLQEVLDGFNMARVL 408
|
|
| MGI|MGI:103071 Rangap1 "RAN GTPase activating protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 168/356 (47%), Positives = 227/356 (63%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+GLKL+ EDAK ++ I E L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+S CF I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 179 PLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAVRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A+ +K +L++++++ N GEEG E+++++M SF MA L
Sbjct: 299 NLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDSFNMAKVL 354
|
|
| UNIPROTKB|F1MAA5 Rangap1 "Protein Rangap1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
Identities = 165/356 (46%), Positives = 224/356 (62%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+GLKL+ EDAK ++ I E L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSKLKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+S CF I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 179 PLTLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAVRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A + +L++++++ N GEEG E++++++ SF MA L
Sbjct: 299 NLSFCEIKRDAALVVAEAGADHAELEKLDLNGNALGEEGCEQLQEVLDSFNMAKVL 354
|
|
| UNIPROTKB|O13066 rangap1 "Ran GTPase-activating protein 1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 162/355 (45%), Positives = 232/355 (65%)
Query: 355 DDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGN 414
+D++ + L +V G+ LSF G+ LKL+ +DA+ ++ I E + L +L LEGN
Sbjct: 4 EDIAQLADCLAKANVGDGE----LSFKGKTLKLNTAQDAEEVIREIEEYEGLQALRLEGN 59
Query: 415 TLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDL 474
T+GV AAKAIA+ L + KR W DMFTGR++ EIP ALR LG+ L AGA+L ELDL
Sbjct: 60 TVGVEAAKAIAEVLQRKPDLKRCHWSDMFTGRLRPEIPTALRSLGDALITAGAQLTELDL 119
Query: 475 SDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGSP 534
SDNAFGP GV G LL+S CF I G K+L+ AL +C++ S G P
Sbjct: 120 SDNAFGPDGVRGFEALLKSPTCFTLQELKLNNCGMGIGGGKILAAALTECHKKSSAHGKP 179
Query: 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 594
LALKVFIAGRNRLEN+GA L+ F+ + TLE V MPQNGI H GITAL+++F+ N L+
Sbjct: 180 LALKVFIAGRNRLENDGATALSEAFRLIGTLEEVHMPQNGINHAGITALAESFKANSLLK 239
Query: 595 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVN 653
+NLNDNT T KG + + +AL L + ++N GDCL++S GA +IA L + L+D+N
Sbjct: 240 VINLNDNTFTEKGGVAMAEALKTLRQVEVINFGDCLVRSKGAQAIASALKEGLHKLKDLN 299
Query: 654 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
L+ EI + L +++++K+ L++++++ N GEEG E+++++++S MA L
Sbjct: 300 LSYCEIKADAAVSLAESVEDKSDLEKLDLNGNCLGEEGCEQVQEILESINMANIL 354
|
|
| ZFIN|ZDB-GENE-040426-1921 rangap1b "Ran GTPase activating protein 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 161/349 (46%), Positives = 224/349 (64%)
Query: 357 VSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTL 416
+ DI + E+++ ++ +LS+ G+GLKLDN E K IV+ I + L SL LEGNTL
Sbjct: 3 LGDIAQITEALA-KTHVGEVELSYKGRGLKLDNAESVKEIVEDIERCQGLQSLRLEGNTL 61
Query: 417 GVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSD 476
GV AA AIA +L ++ W DMFTGR+++EIP AL+ LGN L +GARL +LDLSD
Sbjct: 62 GVEAADAIAKSLEAKRELEQCHWSDMFTGRLRSEIPPALKSLGNALMTSGARLTQLDLSD 121
Query: 477 NAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGSPLA 536
NAFGP GV+G+ +LL+SS C+ G +L+ AL +C++ S SPL
Sbjct: 122 NAFGPDGVKGIENLLKSSACYTLQELRLNNCGMGSGGGVVLASALTECHKQSSAAASPLR 181
Query: 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 596
LKVFIAGRNRLEN+GA LA FK L +LE V MPQNGI H GITAL+ A + N NL+ L
Sbjct: 182 LKVFIAGRNRLENDGATALAKAFKLLGSLEEVHMPQNGINHPGITALAAALKHNPNLQVL 241
Query: 597 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVNLT 655
NLNDNT T KG+ + +A+ L L +N GDCL++S GA +IA L + L ++NL+
Sbjct: 242 NLNDNTFTTKGSKAMAEAIRNLQCLKAINFGDCLVRSEGAIAIAGALREGLHLLRELNLS 301
Query: 656 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704
EI + + KA++ K L++++++ N FGE+G E +++ M+ M
Sbjct: 302 FGEICEAAAMVVAKAVQGKADLEKLDLNGNCFGEDGCEALKEAMEKMNM 350
|
|
| RGD|1310380 Rangap1 "RAN GTPase activating protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 166/356 (46%), Positives = 226/356 (63%)
Query: 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG 413
++D++ + + L V GQ LSF G+GLKL+ EDAK ++ I E L +L LEG
Sbjct: 3 SEDIAKLAETLAKTQVAGGQ----LSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEG 58
Query: 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELD 473
NT+GV AA+ IA AL K KR W DMFTGR+++EIP AL LG GL AGA+LVELD
Sbjct: 59 NTVGVEAARVIAKALEKKSKLKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELD 118
Query: 474 LSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGS 533
LSDNAFGP GV G LL+S CF I G K+L+ AL +C+ S +G
Sbjct: 119 LSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGK 178
Query: 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 593
PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TAL+ AF N L
Sbjct: 179 PLTLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTALAQAFAINPLL 238
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDV 652
R +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA + L+++
Sbjct: 239 RVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADAVRGGLPKLKEL 298
Query: 653 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708
NL+ EI L + +A+ +K +L++++++ N GEEG E++++++ SF MA L
Sbjct: 299 NLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVLDSFNMAKVL 354
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 999 | |||
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-62 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 7e-47 | |
| pfam07834 | 169 | pfam07834, RanGAP1_C, RanGAP1 C-terminal domain | 2e-06 | |
| pfam11705 | 221 | pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym | 0.003 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 7e-62
Identities = 131/331 (39%), Positives = 185/331 (55%), Gaps = 22/331 (6%)
Query: 386 KLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTG 445
+L E A ++ + ++VL LEGNTLG AAKA+A AL K TG
Sbjct: 8 ELLKTERATELLPKLLCLQVL---RLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64
Query: 446 RMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 505
R IP L+ L GL G L ELDLSDNA GP G L LLRSS +L+ELKLN
Sbjct: 65 R----IPRGLQSLLQGLT-KGCGLQELDLSDNALGPDGCGVLESLLRSS---SLQELKLN 116
Query: 506 NNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 565
NNGLG G +LL+K L D P AL+ + GRNRLE + LA + + L
Sbjct: 117 NNGLGDRGLRLLAKGLKDL---------PPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 566 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ + + NGI GI AL++ + N NL L+LN+N +T +GA L + L+ L SL +LN
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
Query: 626 LGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684
LGD L AGA+++A L+ N +L ++L+CN+I+ G DL + + K L ++++
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287
Query: 685 NQFGEEGVEEMEKLMKSFG-MAAALVLEDDE 714
N+FGEEG + + + + G +L ++DD
Sbjct: 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDS 318
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 7e-47
Identities = 119/367 (32%), Positives = 178/367 (48%), Gaps = 17/367 (4%)
Query: 377 KLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR 436
K S G+ LKL+ KED K +V+ + + LV ++L GNT+G A + + + ++ + +
Sbjct: 3 KFSIGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRV 62
Query: 437 ALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCC 496
+ D FTGR K E+ L L L + RL ++DLSDNAFG E L DL+ SS
Sbjct: 63 VNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGSEFPEELGDLISSST- 120
Query: 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 556
L LKLNNNGLG + KAL + K P L+V I GRNRLEN ++ A
Sbjct: 121 -DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP-KLEVVICGRNRLENGSKELSA 178
Query: 557 AVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
A+ + + L+ V++ QNGI G+T L+ + +L L+L DNT T +G+ L AL
Sbjct: 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDL-VKAMK 672
+ L L L DCLL + G S+ + + L + NE LD+ + +
Sbjct: 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298
Query: 673 --NKTKLKQINVSENQFGEEGV--EEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEE 728
L + + N+ E + E + + V+E EG+ EE +E E
Sbjct: 299 QDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVE-----VVEKQEGDVVTEESTDEESE 353
Query: 729 ENDSDAE 735
+ E
Sbjct: 354 DEVEIDE 360
|
Length = 388 |
| >gnl|CDD|203777 pfam07834, RanGAP1_C, RanGAP1 C-terminal domain | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSP 840
++ FL PS LGP +QL +++ ++ +E A +KVSS+ ++
Sbjct: 17 LSTFLVFPSPEKLIRLGPKRSQLIAQQVDVTDAEKVVE----AFLKVSSVYKDEPEVKQ- 71
Query: 841 SSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVR 900
++FE T L R+ F+ ++ + ++ +LLV++GL+K EDK KI+ L G + +
Sbjct: 72 --AVFETTDALMRKAFS--NSPFQSNSFITSLLVNMGLLKSEDKVKKIS-VLPGPLLTLN 126
Query: 901 LLSEAKLLPSLTESQLLA 918
+ + + P LLA
Sbjct: 127 HMVQQEYFPKDLAGVLLA 144
|
Ran-GTPase activating protein 1 (RanGAP1) is a GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Its C-terminal domain is required for RanGAP1 localisation at the vertebrate nuclear pore complex, and is sumoylated by the small ubiquitin-related modifier protein (SUMO-1). This domain is composed almost entirely of helical substructures that are organised into an alpha-alpha superhelix fold, with the exception of the peptide containing the lysine residue required for SUMO-1 conjugation. Length = 169 |
| >gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL-MKSFGMAAALVLEDDEGECSDEEQD 723
+ + K K L + F EE + EKL M + + DE + DEE++
Sbjct: 120 MGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEE 179
Query: 724 EESEEENDSDAEGDNSNLSHNDSN 747
EE EEE++ + D+ + +D N
Sbjct: 180 EEEEEEDEDFDDDDDDD--DDDYN 201
|
RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 999 | |||
| KOG1909|consensus | 382 | 100.0 | ||
| PF07834 | 183 | RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IP | 100.0 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.95 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.94 | |
| PF07834 | 183 | RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IP | 99.94 | |
| KOG1909|consensus | 382 | 99.92 | ||
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.9 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.69 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.68 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.67 | |
| KOG0444|consensus | 1255 | 99.66 | ||
| KOG4194|consensus | 873 | 99.63 | ||
| KOG4308|consensus | 478 | 99.62 | ||
| KOG0444|consensus | 1255 | 99.6 | ||
| KOG4308|consensus | 478 | 99.57 | ||
| KOG4194|consensus | 873 | 99.56 | ||
| KOG0618|consensus | 1081 | 99.3 | ||
| KOG4341|consensus | 483 | 99.22 | ||
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.11 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.1 | |
| KOG0472|consensus | 565 | 99.09 | ||
| KOG0618|consensus | 1081 | 99.07 | ||
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.07 | |
| KOG0472|consensus | 565 | 99.05 | ||
| KOG3207|consensus | 505 | 99.02 | ||
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.98 | |
| KOG3207|consensus | 505 | 98.94 | ||
| KOG2120|consensus | 419 | 98.88 | ||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.86 | |
| KOG4237|consensus | 498 | 98.85 | ||
| KOG2120|consensus | 419 | 98.83 | ||
| KOG4237|consensus | 498 | 98.81 | ||
| KOG0617|consensus | 264 | 98.78 | ||
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.77 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.74 | |
| KOG0617|consensus | 264 | 98.68 | ||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.67 | |
| KOG4341|consensus | 483 | 98.67 | ||
| KOG1859|consensus | 1096 | 98.37 | ||
| KOG1259|consensus | 490 | 98.29 | ||
| KOG1259|consensus | 490 | 98.18 | ||
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.17 | |
| KOG0532|consensus | 722 | 98.14 | ||
| KOG1947|consensus | 482 | 98.04 | ||
| KOG1947|consensus | 482 | 98.03 | ||
| KOG0532|consensus | 722 | 97.99 | ||
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.94 | |
| KOG3665|consensus | 699 | 97.94 | ||
| KOG1859|consensus | 1096 | 97.91 | ||
| KOG0531|consensus | 414 | 97.88 | ||
| KOG2982|consensus | 418 | 97.84 | ||
| KOG2982|consensus | 418 | 97.79 | ||
| KOG0531|consensus | 414 | 97.78 | ||
| KOG2739|consensus | 260 | 97.75 | ||
| PLN03150 | 623 | hypothetical protein; Provisional | 97.58 | |
| KOG4242|consensus | 553 | 97.53 | ||
| PLN03150 | 623 | hypothetical protein; Provisional | 97.49 | |
| KOG3665|consensus | 699 | 97.45 | ||
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.31 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.19 | |
| KOG2739|consensus | 260 | 97.13 | ||
| KOG4242|consensus | 553 | 97.13 | ||
| KOG1644|consensus | 233 | 96.53 | ||
| KOG4579|consensus | 177 | 96.52 | ||
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.37 | |
| KOG4658|consensus | 889 | 96.34 | ||
| KOG4579|consensus | 177 | 96.34 | ||
| KOG2123|consensus | 388 | 96.33 | ||
| KOG1644|consensus | 233 | 96.22 | ||
| KOG2242|consensus | 558 | 95.95 | ||
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.94 | |
| KOG4658|consensus | 889 | 95.92 | ||
| KOG2123|consensus | 388 | 95.88 | ||
| KOG3735|consensus | 353 | 95.22 | ||
| KOG3735|consensus | 353 | 95.18 | ||
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.06 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 94.95 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 94.74 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 93.79 | |
| KOG3864|consensus | 221 | 92.72 | ||
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 92.39 | |
| PF09026 | 101 | CENP-B_dimeris: Centromere protein B dimerisation | 91.92 | |
| KOG3864|consensus | 221 | 91.85 | ||
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.44 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.23 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 91.1 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 90.21 | |
| KOG1832|consensus | 1516 | 86.54 | ||
| KOG1832|consensus | 1516 | 85.97 | ||
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 83.37 |
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=378.20 Aligned_cols=319 Identities=44% Similarity=0.690 Sum_probs=303.3
Q ss_pred EEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHH
Q psy18075 377 KLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALR 456 (999)
Q Consensus 377 ~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~ 456 (999)
..++.|..+++.+.++.+.+...+....++++|+|+||.|+.++++.+++.|++.++|+...|+++++||+..++|.++.
T Consensus 3 ~~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~ 82 (382)
T KOG1909|consen 3 FFSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK 82 (382)
T ss_pred eeccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCC
Q psy18075 457 YLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLA 536 (999)
Q Consensus 457 ~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~s 536 (999)
.|+.+++.++ +|+.||||+|.|++.|++.|..+|++ |+.|++|.|+||+|++.++..|+++|..++ ..+.++.++.
T Consensus 83 ~l~~aL~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-~~kk~~~~~~ 158 (382)
T KOG1909|consen 83 MLSKALLGCP-KLQKLDLSDNAFGPKGIRGLEELLSS--CTDLEELYLNNCGLGPEAGGRLGRALFELA-VNKKAASKPK 158 (382)
T ss_pred HHHHHHhcCC-ceeEeeccccccCccchHHHHHHHHh--ccCHHHHhhhcCCCChhHHHHHHHHHHHHH-HHhccCCCcc
Confidence 9999999755 99999999999999999999999987 789999999999999999999999999998 6778889999
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
|+++..++|++.+.|+..++..|+.+++|+.+.+++|.|...|+..++.++..|++|++|||.+|.++..|...++.+++
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCC--ChhcHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF--GEEGVE 693 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I--s~eg~~ 693 (999)
.+++|++|++++|.+.+.|+.++..++... ++|+.|.|.+|.|+.+++..++.++...+.|..|+|++|++ .++++.
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ 318 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGID 318 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHH
Confidence 999999999999999999999999999876 99999999999999999999999999999999999999999 445555
Q ss_pred HHHHHH
Q psy18075 694 EMEKLM 699 (999)
Q Consensus 694 ~L~~~L 699 (999)
.+...+
T Consensus 319 ei~~~~ 324 (382)
T KOG1909|consen 319 EIASKF 324 (382)
T ss_pred HHHHhc
Confidence 555444
|
|
| >PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.72 Aligned_cols=140 Identities=29% Similarity=0.380 Sum_probs=121.6
Q ss_pred ccccccccccccCCcHHHHhccCcchHHHHHHHhhcCccchhHHHHHHHHHHhhccccCCCCcCCCCchhHHHHHHHHHH
Q psy18075 775 QLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRE 854 (999)
Q Consensus 775 ~~~~~~~~~f~~~Ps~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 854 (999)
.+.++++++|+.+||+++|++||++| ++||+|+++ ++|+++++++||||||||+++.++|+ ||++++|+||++
T Consensus 25 ~~~p~~v~~FL~~PS~ekLl~LG~~r-s~li~qqvd---~~d~~k~~e~~lKVsSv~~~~~~vk~---av~~~~Dall~k 97 (183)
T PF07834_consen 25 PPIPVTVATFLSSPSPEKLLQLGDKR-SQLIAQQVD---TSDPEKVAEAFLKVSSVYNDESEVKS---AVLQCIDALLKK 97 (183)
T ss_dssp -----HHHHHHHS--HHHHHCTGTTH-HHHHHHCS----TTSHHHHHHHHHHHHCT--SSHHHHH---HHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhCCCHHHHHHhChHH-HHHHHHHHc---cccHHHHHHHHHHHHHHHcCcHHHHH---HHHHHHHHHHHH
Confidence 35689999999999999999999999 889999988 88999999999999999999988876 999999999999
Q ss_pred HhhhhhccCcchhhhHHHHHHhccccccccccccccCcccHHHHHHHHHhcCCCCCcCHHHHHHHhhcCC
Q psy18075 855 LFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMD 924 (999)
Q Consensus 855 ~f~~~~~~~~~~~~~~~llv~lgllk~e~k~~k~~~~~~g~~~~l~~~~~~~~fp~~~~~~l~~fl~~~~ 924 (999)
+|+++.+ ++++|++ .|||||||||+||| ||++|+|+||+++|+|++||+|||..++++|++||+|+.
T Consensus 98 aFs~~~~-~~~~f~n-~LLV~mGLLKsEdK-~k~i~~l~G~l~~Leh~vqq~YFp~~~~~~L~aFlsKp~ 164 (183)
T PF07834_consen 98 AFSSASF-QSNSFLN-SLLVHMGLLKSEDK-FKPISNLPGPLLALEHAVQQDYFPKSTRPLLQAFLSKPN 164 (183)
T ss_dssp HHCSTTS--HHHHHH-HHHHHTTSSSSSSH-HHHHSHHHHHHHHHHHHCCSTTS-GGGHHHHHHHHCSCC
T ss_pred HHhcccc-chHHHHH-HHHHHhcccccccc-cCCCCCCchHHHHHHHHhhhhhccHHHHHHHHHHHcCCc
Confidence 9999985 8777776 59999999999995 999999999999999999999999999999999999994
|
RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B .... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-28 Score=253.82 Aligned_cols=310 Identities=35% Similarity=0.465 Sum_probs=274.3
Q ss_pred EEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHH
Q psy18075 377 KLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALR 456 (999)
Q Consensus 377 ~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~ 456 (999)
..++.|..+++.+.++++.....+..+..+..++||||.|+.+++..+++.++...+|+...+++.|++|.+.+++.++.
T Consensus 3 ~fSI~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~ 82 (388)
T COG5238 3 KFSIGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV 82 (388)
T ss_pred eeccCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCC
Q psy18075 457 YLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLA 536 (999)
Q Consensus 457 ~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~s 536 (999)
.|..++. .|++|+..+||+|.|+......+.+++.+. ..|.+|.|+||++++.++..|+++|.....+ ++...-+.
T Consensus 83 ~Ll~aLl-kcp~l~~v~LSDNAfg~~~~e~L~d~is~~--t~l~HL~l~NnGlGp~aG~rigkal~~la~n-KKaa~kp~ 158 (388)
T COG5238 83 MLLKALL-KCPRLQKVDLSDNAFGSEFPEELGDLISSS--TDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-KKAADKPK 158 (388)
T ss_pred HHHHHHh-cCCcceeeeccccccCcccchHHHHHHhcC--CCceeEEeecCCCCccchhHHHHHHHHHHHH-hhhccCCC
Confidence 9998887 589999999999999999999999999876 4899999999999999999999988765332 23344578
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhH-HhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~-aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
|++++.++|++.+......+..|....+|+++.+.+|+|...|+..|+- .+..+++|+.|||.+|.++..|...++.++
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 9999999999999888888888888889999999999999999988775 677899999999999999999999999999
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCC--CCCCEEEccCCCCCCcchhh--HHHhhc-cCCCcCEEEccCCCCChh
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDN--TTLEDVNLTCNEISVQGGLD--LVKAMK-NKTKLKQINVSENQFGEE 690 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~--~~L~~LdLs~N~I~~~g~~~--L~~~L~-~~~sL~~LdLs~N~Is~e 690 (999)
+.++.|++|++++|.++..|+..+...+... ++|..|-+.+|.+....+.. +....+ ..|-|..|-++||+|.+.
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 9999999999999999999998888877654 99999999999887655443 222222 367788888899999874
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=248.32 Aligned_cols=314 Identities=42% Similarity=0.613 Sum_probs=259.4
Q ss_pred EEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHH
Q psy18075 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRY 457 (999)
Q Consensus 378 LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~ 457 (999)
|+|.++.+ +...|..++..+ .+|+.|+++++.+++.+...++..+...++++.+.+.....++ ++..+..
T Consensus 3 l~L~~~~l---~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~----~~~~~~~ 72 (319)
T cd00116 3 LSLKGELL---KTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR----IPRGLQS 72 (319)
T ss_pred cccccCcc---cccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC----cchHHHH
Confidence 55666666 455565554444 3488888888888877777777777777666554443332221 3455555
Q ss_pred hhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCc
Q psy18075 458 LGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLAL 537 (999)
Q Consensus 458 L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sL 537 (999)
+...+.. +++|+.|+|++|.+.......+..+... ++|++|++++|++++.+...+...+..+ +++|
T Consensus 73 ~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~---------~~~L 139 (319)
T cd00116 73 LLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDL---------PPAL 139 (319)
T ss_pred HHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhC---------CCCc
Confidence 5554443 7899999999999987777777766543 4799999999999988888888877764 1459
Q ss_pred cEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccC
Q psy18075 538 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617 (999)
Q Consensus 538 k~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~ 617 (999)
+.|++++|.++..+...+...+..+++|++|+|++|.+++.++..++.++..+++|++|+|++|.+++.++..++..+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 99999999999888888888898899999999999999999988899999999999999999999999888889999999
Q ss_pred CCCCcEEEcCCCCCCccchHHHHHhccC-CCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 618 LPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 618 l~sL~~LdLs~N~L~d~g~~~La~aL~~-~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
+++|++|++++|.+++.+...++..+.. ++.|++|++++|.|++.|...++..+..+++|++|++++|.++++|+..++
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 9999999999999998888888877654 589999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC-CCCCEEeCCCCC
Q psy18075 697 KLMKSF-GMAAALVLEDDE 714 (999)
Q Consensus 697 ~~L~~l-~~L~~L~Ls~N~ 714 (999)
.++... ++|+.+++.+|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 999999 999999988763
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=238.10 Aligned_cols=136 Identities=30% Similarity=0.399 Sum_probs=110.8
Q ss_pred ccccccchhHhhcCCcHHHHhhcCCchhhhhHhhhcCCchhHHHHHHHHHHhhhcccccCcccccchhhhhhcccccccc
Q psy18075 71 SQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVLSCSLMKSTVS 150 (999)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (999)
...+|+||++||++||+++|++||++++++|+|+++..++++++++| ||||||+++
T Consensus 24 ~~~~p~~v~~FL~~PS~ekLl~LG~~rs~li~qqvd~~d~~k~~e~~----lKVsSv~~~-------------------- 79 (183)
T PF07834_consen 24 SPPIPVTVATFLSSPSPEKLLQLGDKRSQLIAQQVDTSDPEKVAEAF----LKVSSVYND-------------------- 79 (183)
T ss_dssp ------HHHHHHHS--HHHHHCTGTTHHHHHHHCS-TTSHHHHHHHH----HHHHCT--S--------------------
T ss_pred CCCCCcCHHHHHhCCCHHHHHHhChHHHHHHHHHHccccHHHHHHHH----HHHHHHHcC--------------------
Confidence 44589999999999999999999999999999999999999998888 999999999
Q ss_pred cccchhhhhhhccccccchhhHHHHHHHHhhhhcccccccccCCCCcchhhhHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q psy18075 151 LKTENLVFVLTKNHCAYHVDRYLESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHL 230 (999)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~n~lL~~~ 230 (999)
+..+++++.+++ |+||++||++| .++..++. |.||+||
T Consensus 80 ----------------------------~~~vk~av~~~~------------Dall~kaFs~~-~~~~~~f~-n~LLV~m 117 (183)
T PF07834_consen 80 ----------------------------ESEVKSAVLQCI------------DALLKKAFSSA-SFQSNSFL-NSLLVHM 117 (183)
T ss_dssp ----------------------------SHHHHHHHHHHH------------HHHHHHHHCST-TS-HHHHH-HHHHHHT
T ss_pred ----------------------------cHHHHHHHHHHH------------HHHHHHHHhcc-ccchHHHH-HHHHHHh
Confidence 555667777666 99999999999 55555555 6799999
Q ss_pred ccccccCCCcccccchhhHHHhhhhhhccccccccchHHHHHH
Q psy18075 231 GLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLAC 273 (999)
Q Consensus 231 ll~k~e~~~~r~~~~LqG~l~~~~~v~~vN~f~Cl~e~~~~sl 273 (999)
||+|+|+| +++.|.+.||+.++.+++..+||+..+...+++.
T Consensus 118 GLLKsEdK-~k~i~~l~G~l~~Leh~vqq~YFp~~~~~~L~aF 159 (183)
T PF07834_consen 118 GLLKSEDK-FKPISNLPGPLLALEHAVQQDYFPKSTRPLLQAF 159 (183)
T ss_dssp TSSSSSSH-HHHHSHHHHHHHHHHHHCCSTTS-GGGHHHHHHH
T ss_pred cccccccc-cCCCCCCchHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 99999996 8989999999999999999999999999887754
|
RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B .... |
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=243.12 Aligned_cols=240 Identities=25% Similarity=0.352 Sum_probs=211.7
Q ss_pred CcccEEEecCCCCC------CccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEE
Q psy18075 467 ARLVELDLSDNAFG------PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVF 540 (999)
Q Consensus 467 ~sL~~LdLS~N~L~------~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L 540 (999)
++|++.++|+-..+ +..+..|.++| -.|++|++|+||.|-|++.|.+.+...|.+|+. |++|
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL--~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~----------L~eL 125 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKAL--LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTD----------LEEL 125 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHH--hcCCceeEeeccccccCccchHHHHHHHHhccC----------HHHH
Confidence 35555555544332 22333344444 356799999999999999999999999999754 9999
Q ss_pred EccCCCCCchhHHHHHHHHhh---------cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 541 IAGRNRLENEGAKMLAAVFKK---------LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 541 ~Ls~N~L~d~g~~~L~~~L~~---------~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
.|.+|.++..|...|+.++.. -+.|+.+...+|++.+.|...++.+|..+++|+.+.+.+|.|..+|+..+
T Consensus 126 ~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al 205 (382)
T KOG1909|consen 126 YLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL 205 (382)
T ss_pred hhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHH
Confidence 999999999998887775433 46899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhcc-CCCcCEEEccCCCCChh
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEE 690 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~-~~sL~~LdLs~N~Is~e 690 (999)
+.++.+|++|+.|||.+|-++..|..+++.+++.+++|+.|++++|.+.+.|+.++..++.. .|+|+.|.|.+|.|+.+
T Consensus 206 ~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 78999999999999999
Q ss_pred cHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 691 GVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 691 g~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
+...+...+...+.|..|++++|.-.+.
T Consensus 286 a~~~la~~~~ek~dL~kLnLngN~l~e~ 313 (382)
T KOG1909|consen 286 AALALAACMAEKPDLEKLNLNGNRLGEK 313 (382)
T ss_pred HHHHHHHHHhcchhhHHhcCCccccccc
Confidence 9999999999999999999999987533
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=224.71 Aligned_cols=291 Identities=28% Similarity=0.355 Sum_probs=243.9
Q ss_pred ccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCC--hhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 375 STKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLG--VNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 375 l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~--~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
++.+.+.++.+ ++.++..++..+..+++|++|+++++.++ ..+...++.++..+++++.+... .+.+....+
T Consensus 25 L~~l~l~~~~l---~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~---~~~~~~~~~ 98 (319)
T cd00116 25 LQVLRLEGNTL---GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS---DNALGPDGC 98 (319)
T ss_pred ccEEeecCCCC---cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEcc---CCCCChhHH
Confidence 67799999988 77888889989988899999999999888 67777777787766666543222 222222333
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+..+ ... ++|++|++++|.+++.++..+...+... +++|+.|+|++|.++..+...+...+..+
T Consensus 99 ~~~~~l----~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-------- 164 (319)
T cd00116 99 GVLESL----LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL-PPALEKLVLGRNRLEGASCEALAKALRAN-------- 164 (319)
T ss_pred HHHHHH----hcc-CcccEEEeeCCccchHHHHHHHHHHHhC-CCCceEEEcCCCcCCchHHHHHHHHHHhC--------
Confidence 333332 222 5799999999999988888887777543 15899999999999988877788777765
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.+|++|++++|.+++.+...++..+..+++|++|+|++|.|++.+...++..+..+++|++|++++|.+++.++..++
T Consensus 165 --~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 165 --RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred --CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 359999999999999999889988988999999999999999999999999999999999999999999988887777
Q ss_pred ccccC-CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccC-CCcCEEEccCCCC
Q psy18075 613 QALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQF 687 (999)
Q Consensus 613 ~aL~~-l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~-~sL~~LdLs~N~I 687 (999)
..+.. .+.|++|++++|.+++.|...++..+..+++|+.|++++|.++++|...+++++... +.|+.||+.+|++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 76543 579999999999999999999999999999999999999999999999999999988 8999999998875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-17 Score=206.27 Aligned_cols=206 Identities=23% Similarity=0.279 Sum_probs=138.6
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.+.......+.. +++|++|+|++|.++.. +... ++.+.+|+.|+|++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~----~p~~----------l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTN------LTSLEFLTLASNQLVGQ----IPRE----------LGQMKSLKWIYLGYNN 223 (968)
T ss_pred CCCCEEECccCcccccCChhhhh------CcCCCeeeccCCCCcCc----CChH----------HcCcCCccEEECcCCc
Confidence 46666666666654333233322 24666666666665421 1122 2234568888888887
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+... ++..+..+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+.. .++..+..+++|+.|+|
T Consensus 224 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 224 LSGE----IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDL 291 (968)
T ss_pred cCCc----CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEEC
Confidence 7643 344566678888888888877643 55667777888888888887764 34555667788888888
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.+... ++..+..+++|+.|++++|.+.. .++..+..+++|+.|+|++|.+... ++..+..+++|+
T Consensus 292 s~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~ 359 (968)
T PLN00113 292 SDNSLSGE----IPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLT 359 (968)
T ss_pred cCCeeccC----CChhHcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCCcCc----CChHHhCCCCCc
Confidence 88887632 45556677888888888888875 3455667788899999998888753 556677888899
Q ss_pred EEeCCCCCCC
Q psy18075 707 ALVLEDDEGE 716 (999)
Q Consensus 707 ~L~Ls~N~~e 716 (999)
.|++++|.-.
T Consensus 360 ~L~Ls~n~l~ 369 (968)
T PLN00113 360 VLDLSTNNLT 369 (968)
T ss_pred EEECCCCeeE
Confidence 9999887643
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-17 Score=172.46 Aligned_cols=211 Identities=21% Similarity=0.258 Sum_probs=110.5
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhcc--------------------------------CCCCccEEEccCCccCchhh
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSS--------------------------------CCFALEELKLNNNGLGITGC 514 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~--------------------------------~c~~L~~L~Ls~n~Lt~~g~ 514 (999)
..+++++||+|.|+...+..+++.+++. +||.|+..+||.|.++....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4677778888888777777777766652 34555555555555554444
Q ss_pred hHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh---------cccccccccCCCccCchhhhhhhH
Q psy18075 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK---------LKTLERVEMPQNGIYHVGITALSD 585 (999)
Q Consensus 515 ~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~---------~~sLe~LdLs~N~It~~g~~~La~ 585 (999)
..+...+.+. ..|.+|.|++|.++..+...++.++.+ -+.|+.+....|++........+.
T Consensus 110 e~L~d~is~~----------t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 110 EELGDLISSS----------TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred hHHHHHHhcC----------CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 4444444432 235555555555554444334433322 134555555555554444444444
Q ss_pred HhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 586 AFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 586 aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
.|....+|+.+.+.+|.|.++|+..++ .++.++.+|+.|||.+|-++-.|..+++.++...+.|+.|.+..|-++..|+
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 444444555555555555555544333 2344455555555555555555555555555555555555555555555555
Q ss_pred hhHHHhhcc--CCCcCEEEccCCCC
Q psy18075 665 LDLVKAMKN--KTKLKQINVSENQF 687 (999)
Q Consensus 665 ~~L~~~L~~--~~sL~~LdLs~N~I 687 (999)
..+...+.. .|+|..|....|.+
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhh
Confidence 555444432 34555555555544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=204.58 Aligned_cols=288 Identities=18% Similarity=0.196 Sum_probs=150.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+. ..++..+..+++|++|+|++|.+.......++ .+++|+.+ ++..+++...+|.
T Consensus 141 ~L~~L~Ls~n~~~-------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L---~L~~n~l~~~~p~ 206 (968)
T PLN00113 141 NLETLDLSNNMLS-------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT----NLTSLEFL---TLASNQLVGQIPR 206 (968)
T ss_pred CCCEEECcCCccc-------ccCChHHhcCCCCCEEECccCcccccCChhhh----hCcCCCee---eccCCCCcCcCCh
Confidence 4566666666652 12344456666666666666665543333332 23333322 2222233333444
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhcc-------
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE------- 526 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~------- 526 (999)
.+.. +.+|+.|+|++|.+.......+.. +++|++|+|++|.++.. +...+..+..
T Consensus 207 ~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 207 ELGQ--------MKSLKWIYLGYNNLSGEIPYEIGG------LTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLY 268 (968)
T ss_pred HHcC--------cCCccEEECcCCccCCcCChhHhc------CCCCCEEECcCceeccc----cChhHhCCCCCCEEECc
Confidence 3322 245555555555554333333321 24555555555554321 1111111100
Q ss_pred -------CCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeecc
Q psy18075 527 -------SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 527 -------~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS 599 (999)
.+..++...+|+.|++++|.+... ++..+..+++|+.|++++|.++.. ++..+..+++|+.|+|+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECc
Confidence 000111123455566655555432 233344455666666666655532 33445555666666666
Q ss_pred CCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCE
Q psy18075 600 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679 (999)
Q Consensus 600 ~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~ 679 (999)
+|.+.. .++..+..+++|+.|++++|.++.. ++..+...++|+.|++++|.+.. .++..+..+++|+.
T Consensus 341 ~n~l~~----~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~----~~p~~~~~~~~L~~ 408 (968)
T PLN00113 341 SNKFSG----EIPKNLGKHNNLTVLDLSTNNLTGE----IPEGLCSSGNLFKLILFSNSLEG----EIPKSLGACRSLRR 408 (968)
T ss_pred CCCCcC----cCChHHhCCCCCcEEECCCCeeEee----CChhHhCcCCCCEEECcCCEecc----cCCHHHhCCCCCCE
Confidence 666553 2344455566666666666666432 23344445667777777776654 24456677888889
Q ss_pred EEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 680 LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|++++|.++.. ++..+..++.|+.|++++|.-.+
T Consensus 409 L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 409 VRLQDNSFSGE----LPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred EECcCCEeeeE----CChhHhcCCCCCEEECcCCcccC
Confidence 99988888753 45567788899999998886543
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-18 Score=192.10 Aligned_cols=270 Identities=22% Similarity=0.292 Sum_probs=216.2
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|+++.|.+ ..++..+..-+++-.|+||+|+|...--..+. +|..+++.++..+|+- .+|+
T Consensus 104 dLt~lDLShNqL--------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-------nLtDLLfLDLS~NrLe-~LPP 167 (1255)
T KOG0444|consen 104 DLTILDLSHNQL--------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-------NLTDLLFLDLSNNRLE-MLPP 167 (1255)
T ss_pred cceeeecchhhh--------hhcchhhhhhcCcEEEEcccCccccCCchHHH-------hhHhHhhhccccchhh-hcCH
Confidence 456688888777 57788888889999999999998764333322 5667778888877764 5677
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
..+.| ..|+.|+||+|.+....++.+ +.+.+|+.|++++.+-+- ..++..|-.
T Consensus 168 Q~RRL--------~~LqtL~Ls~NPL~hfQLrQL------PsmtsL~vLhms~TqRTl---~N~Ptsld~---------- 220 (1255)
T KOG0444|consen 168 QIRRL--------SMLQTLKLSNNPLNHFQLRQL------PSMTSLSVLHMSNTQRTL---DNIPTSLDD---------- 220 (1255)
T ss_pred HHHHH--------hhhhhhhcCCChhhHHHHhcC------ccchhhhhhhcccccchh---hcCCCchhh----------
Confidence 77665 489999999999876666655 445689999999876542 222333333
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.++||.|.|. .+++.+-++++|+.|+||+|+|+.. ........+|+.|+||.|+++ .++.
T Consensus 221 l~NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL-----~~~~~~W~~lEtLNlSrNQLt-----~LP~ 285 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITEL-----NMTEGEWENLETLNLSRNQLT-----VLPD 285 (1255)
T ss_pred hhhhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeee-----eccHHHHhhhhhhccccchhc-----cchH
Confidence 345999999999988 4788888899999999999999863 344555678999999999998 6999
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
++++++.|+.|.+.+|.++-+| |+.++++..+|+.+..++|.+. .+++.+..|.+|+.|.|+.|++-.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~NrLiT---- 353 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDHNRLIT---- 353 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhcccccceee----
Confidence 9999999999999999998777 6888999999999999999886 478888999999999999999755
Q ss_pred HHHHHHhcCCCCCEEeCCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
++.++.-++.|..|++..|.
T Consensus 354 -LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 354 -LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -chhhhhhcCCcceeeccCCc
Confidence 78888899999999998874
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-16 Score=182.41 Aligned_cols=288 Identities=20% Similarity=0.239 Sum_probs=157.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHh-hhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRAL-WKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll-~~nl~t~rl~~~ip 452 (999)
+++.++++.|.+ ..+++......+|+.|+|.+|.|.......+. .+|.++.+. ..|+++---....|
T Consensus 103 nLq~v~l~~N~L--------t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 103 NLQEVNLNKNEL--------TRIPRFGHESGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred cceeeeeccchh--------hhcccccccccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhchhhcccCCCCC
Confidence 566677777666 35666666667799999999988776655444 455554432 23333221111122
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHH------------
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA------------ 520 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~------------ 520 (999)
...+|++|+|++|.|+..+...|..+ .+|..|.|++|+|+..-...+...
T Consensus 171 ------------~~~ni~~L~La~N~It~l~~~~F~~l------nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 171 ------------AKVNIKKLNLASNRITTLETGHFDSL------NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred ------------CCCCceEEeecccccccccccccccc------chheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 23467777777777766665555443 256666666666653333222211
Q ss_pred -------------------HhhhccCCc----CCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 521 -------------------LHDCYESSK----KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 521 -------------------L~~~~~~s~----~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
+..+. +++ .+-.+..+++|+|..|++..-. -..+-.++.|+.|+|++|.|..
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhh----cccccccchhhhhccchhhhhe
Confidence 00000 000 0001333444444444433110 0122234555555566655544
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH-hccCCCCCCEEEccC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTC 656 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~-aL~~~~~L~~LdLs~ 656 (999)
..+ .....++.|+.|+|++|.|+.- =...+..+..|++|+|++|.+. .|++ ++....+|++|||+.
T Consensus 308 ih~----d~WsftqkL~~LdLs~N~i~~l----~~~sf~~L~~Le~LnLs~Nsi~-----~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 308 IHI----DSWSFTQKLKELDLSSNRITRL----DEGSFRVLSQLEELNLSHNSID-----HLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred eec----chhhhcccceeEeccccccccC----ChhHHHHHHHhhhhcccccchH-----HHHhhHHHHhhhhhhhcCcC
Confidence 322 2233355666666666666521 1123334556666666666653 3443 344458888999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
|.|+. .+..-+.++..+++|+.|+|.||+|.. .-.+++..++.|++|+|.+|.
T Consensus 375 N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~----I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 375 NELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKS----IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred CeEEE-EEecchhhhccchhhhheeecCceeee----cchhhhccCcccceecCCCCc
Confidence 97764 122234556778899999999999866 234678889999999998873
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-16 Score=187.57 Aligned_cols=325 Identities=26% Similarity=0.342 Sum_probs=259.8
Q ss_pred ccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhC-hhhHHH-hhhhcccCCCccccc
Q psy18075 375 STKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKH-EHFKRA-LWKDMFTGRMKTEIP 452 (999)
Q Consensus 375 l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~-~~Lk~l-l~~nl~t~rl~~~ip 452 (999)
+..+++.+|.+ .+.+++.++.++..+.+|..|+|++|.+++.++..++..+... ..++.+ +..+..+ -
T Consensus 89 l~~L~L~~~~l---~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~-------~ 158 (478)
T KOG4308|consen 89 LLHLSLANNRL---GDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT-------S 158 (478)
T ss_pred HHHhhhhhCcc---ccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc-------c
Confidence 66789999999 7789999999999999999999999999999999999999865 344322 1222222 2
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhc---cCCCCccEEEccCCccCchhhhHHHHHHhhhccCCc
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS---SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSK 529 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s---~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~ 529 (999)
.+...+...+.. +..++.++++.|.+...|...++..+.+ +.| ++++|+|++|.++..++..+...+....
T Consensus 159 ~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~-~le~L~L~~~~~t~~~c~~l~~~l~~~~---- 232 (478)
T KOG4308|consen 159 EGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLS-SLETLKLSRCGVTSSSCALLDEVLASGE---- 232 (478)
T ss_pred cchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccc-cHHHHhhhhcCcChHHHHHHHHHHhccc----
Confidence 345556666665 8899999999999999999999999986 555 9999999999999999999999988743
Q ss_pred CCCCCCCccEEEccCCCCCchhHHHHHHHHhhc-ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCc
Q psy18075 530 KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGA 608 (999)
Q Consensus 530 ~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~-~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~ 608 (999)
..+..|++.+|.+.+.|+..+...+... +.+++++++.|.|++.|+..++..+..++.++.|.++.|.+.+.++
T Consensus 233 -----~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 233 -----SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred -----hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 2377799999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcEEEcCCCCCCccch-----------------------------HHHHHhccCC-CCCCEEEccCCC
Q psy18075 609 IPLGQALSKLPSLAILNLGDCLLKSAGA-----------------------------SSIAKYLTDN-TTLEDVNLTCNE 658 (999)
Q Consensus 609 ~~L~~aL~~l~sL~~LdLs~N~L~d~g~-----------------------------~~La~aL~~~-~~L~~LdLs~N~ 658 (999)
..+.+.+.....+..+-+.+++....+. ..+..+...- ..+..|++..+.
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQV 387 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccc
Confidence 8888888777777777777555433322 1122222222 335667777777
Q ss_pred CCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCCCc
Q psy18075 659 ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 720 (999)
Q Consensus 659 I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~edE 720 (999)
+...++..++..+..++.+..++++.|...+++...+......+..+..+.++.|..-..++
T Consensus 388 ~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 449 (478)
T KOG4308|consen 388 IEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGT 449 (478)
T ss_pred cccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhcch
Confidence 77777777777777788888888888888888777777777776677777777776544333
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-17 Score=184.49 Aligned_cols=264 Identities=21% Similarity=0.252 Sum_probs=162.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhc-ccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDM-FTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl-~t~rl~~~ip 452 (999)
.+++|.+....+ ..+++.++++.+|++|.+++|.+.. +..-|..+|.|+.+...++ ..+ +.||
T Consensus 33 ~~~WLkLnrt~L--------~~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKn---sGiP 96 (1255)
T KOG0444|consen 33 QMTWLKLNRTKL--------EQVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKN---SGIP 96 (1255)
T ss_pred heeEEEechhhh--------hhChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhcccccc---CCCC
Confidence 466777776655 6788999999999999999998754 3334556777766544432 222 3566
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhh--------h
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD--------C 524 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~--------~ 524 (999)
+.+-. +..|+.||||+|++.... ..+..+ +++-.|+||+|+|...--..+.. |.. +
T Consensus 97 ~diF~--------l~dLt~lDLShNqL~EvP-~~LE~A------Kn~iVLNLS~N~IetIPn~lfin-LtDLLfLDLS~N 160 (1255)
T KOG0444|consen 97 TDIFR--------LKDLTILDLSHNQLREVP-TNLEYA------KNSIVLNLSYNNIETIPNSLFIN-LTDLLFLDLSNN 160 (1255)
T ss_pred chhcc--------cccceeeecchhhhhhcc-hhhhhh------cCcEEEEcccCccccCCchHHHh-hHhHhhhccccc
Confidence 65543 357888999999886443 223222 47888888888875322211111 111 0
Q ss_pred --ccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCC
Q psy18075 525 --YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 602 (999)
Q Consensus 525 --~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~ 602 (999)
...+..+-....|++|.|++|.|.....+.|+ .+.+|+.|++++.+=|- ..++..+..+.+|+.+|||.|.
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc----cchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccC
Confidence 00011111122344444444444422222211 13344444444443321 1344555566788888888888
Q ss_pred CCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEc
Q psy18075 603 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINV 682 (999)
Q Consensus 603 Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdL 682 (999)
+. .+++++..+++|+.|+|++|.|+... .......+|+.|+||.|+++ .++.++..+++|+.|.+
T Consensus 234 Lp-----~vPecly~l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 234 LP-----IVPECLYKLRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred CC-----cchHHHhhhhhhheeccCcCceeeee-----ccHHHHhhhhhhccccchhc-----cchHHHhhhHHHHHHHh
Confidence 77 57888888889999999999887433 22334478888888888887 47888888888888888
Q ss_pred cCCCCChhc
Q psy18075 683 SENQFGEEG 691 (999)
Q Consensus 683 s~N~Is~eg 691 (999)
.+|.++-+|
T Consensus 299 n~NkL~FeG 307 (1255)
T KOG0444|consen 299 NNNKLTFEG 307 (1255)
T ss_pred ccCcccccC
Confidence 888877654
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-16 Score=184.52 Aligned_cols=263 Identities=26% Similarity=0.338 Sum_probs=227.0
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHH
Q psy18075 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVE 485 (999)
Q Consensus 406 L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~ 485 (999)
+..|.|.+|.+++.++..++.++..+ .+|..|+|++|.+++.|+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-----------------------------------~~L~~L~l~~n~l~~~g~~ 133 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-----------------------------------PTLGQLDLSGNNLGDEGAR 133 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-----------------------------------ccHhHhhcccCCCccHhHH
Confidence 78889999999999888888877743 3677899999999999999
Q ss_pred HHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh----
Q psy18075 486 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK---- 561 (999)
Q Consensus 486 ~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~---- 561 (999)
.+++.+..+.| .|+.|++..|.++..|+..++..+..+. .++.++++.|.+...|...++.++..
T Consensus 134 ~l~~~l~~~~~-~l~~L~l~~c~l~~~g~~~l~~~L~~~~----------~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~ 202 (478)
T KOG4308|consen 134 LLCEGLRLPQC-LLQTLELVSCSLTSEGAAPLAAVLEKNE----------HLTELDLSLNGLIELGLLVLSQALESAASP 202 (478)
T ss_pred HHHhhcccchH-HHHHHHhhcccccccchHHHHHHHhccc----------chhHHHHHhcccchhhhHHHhhhhhhhhcc
Confidence 99999998766 8999999999999999999999998754 59999999999999999999998886
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhccc-CceeeccCCCCCcCCcccccccccCC-CCCcEEEcCCCCCCccchHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKN-LRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~-Lr~LdLS~N~Lsd~G~~~L~~aL~~l-~sL~~LdLs~N~L~d~g~~~L 639 (999)
..++++|.|.+|.++..++..+...+...+. ++.|++..|.+++.|+..+...+... ..++++++..|.|++.|...+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 6799999999999999999999999999888 88899999999999999999999888 799999999999999999999
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC-EEeCCCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA-ALVLEDDE 714 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~-~L~Ls~N~ 714 (999)
+..+..++.++.|.++.|.+.+.++..+.+.+.....+..+-+.++.....+...+.........+. ....+++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNR 358 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhcc
Confidence 9999999999999999999999999999999999999999988877665555444444433333333 33444443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-16 Score=177.53 Aligned_cols=270 Identities=20% Similarity=0.228 Sum_probs=169.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHH-----------------HhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHH
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDA-----------------INEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR 436 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~a-----------------L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ 436 (999)
++++|+|..|.+.-.+.+.+++++.. +.+-.+|++|+|++|.|++-....|.. |..
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~-------lns 198 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS-------LNS 198 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc-------cch
Confidence 57788888888876666666655432 112246888999999888876665552 212
Q ss_pred HhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCc------cHHHHHHH-Hhc-----------cCCCC
Q psy18075 437 ALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI------GVEGLADL-LRS-----------SCCFA 498 (999)
Q Consensus 437 ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~------gv~~L~~~-L~s-----------~~c~~ 498 (999)
++...+..+|+...-+..++ ++++|+.|+|..|+|.-. |+..+..+ |+. ..|.+
T Consensus 199 L~tlkLsrNrittLp~r~Fk--------~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFK--------RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred heeeecccCcccccCHHHhh--------hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 22223334444332223333 346777777777766432 11111110 000 23456
Q ss_pred ccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCch
Q psy18075 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 499 L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~ 578 (999)
+++|+|..|++....-..+. +.++|+.|+||+|.|...... ....+++|++|+|+.|+|+..
T Consensus 271 me~l~L~~N~l~~vn~g~lf--------------gLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLF--------------GLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred cceeecccchhhhhhccccc--------------ccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccC
Confidence 67777777766533222222 236689999999987654332 233478899999999998864
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
. ...|..+..|+.|+|+.|.|. .+++ ++..+++|+.|||+.|.|+- .++.-+.++..+++|+.|+|.+|
T Consensus 333 ~----~~sf~~L~~Le~LnLs~Nsi~-----~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 333 D----EGSFRVLSQLEELNLSHNSID-----HLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred C----hhHHHHHHHhhhhcccccchH-----HHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCc
Confidence 3 235566788899999999887 4554 45567789999999988752 12223556667788999999999
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+|..- --+++..++.|++|||.+|.|...
T Consensus 403 qlk~I----~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 403 QLKSI----PKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred eeeec----chhhhccCcccceecCCCCcceee
Confidence 88763 235677888999999999887653
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-13 Score=158.17 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=129.2
Q ss_pred CCCccEEEccCCccCch--------hhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHH--HHH----H--
Q psy18075 496 CFALEELKLNNNGLGIT--------GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML--AAV----F-- 559 (999)
Q Consensus 496 c~~L~~L~Ls~n~Lt~~--------g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L--~~~----L-- 559 (999)
|.+|+.|+.++|.|+.. .+..+.-+..+...++...++..+|++|+|..|+|..--...+ ... +
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 45666666666666321 1111111112222335556667889999999998764221111 110 0
Q ss_pred -------------hhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 560 -------------KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 560 -------------~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
..++.|+.|++.+|.+++..+. .|...++||.|+|++|.++.- -+..+.++..|++|+|
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~f----pas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSF----PASKLRKLEELEELNL 414 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeeeecccccccC----CHHHHhchHHhHHHhc
Confidence 1134577788888888887554 344568899999999988731 1234556778888999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.++ .|+..+..+..|+.|...+|+|.. ++ .+...+.|+.+|++.|.++... +...... ++|+
T Consensus 415 SGNkL~-----~Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~qL~~lDlS~N~L~~~~---l~~~~p~-p~Lk 479 (1081)
T KOG0618|consen 415 SGNKLT-----TLPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQLKVLDLSCNNLSEVT---LPEALPS-PNLK 479 (1081)
T ss_pred ccchhh-----hhhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCcceEEecccchhhhhh---hhhhCCC-cccc
Confidence 999885 467777777888888888888874 45 5678889999999999998742 2233222 8999
Q ss_pred EEeCCCCCC
Q psy18075 707 ALVLEDDEG 715 (999)
Q Consensus 707 ~L~Ls~N~~ 715 (999)
+||++||-.
T Consensus 480 yLdlSGN~~ 488 (1081)
T KOG0618|consen 480 YLDLSGNTR 488 (1081)
T ss_pred eeeccCCcc
Confidence 999999876
|
|
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=134.40 Aligned_cols=303 Identities=20% Similarity=0.222 Sum_probs=208.0
Q ss_pred CCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCC-CCChhHHHHHHHHHhhCh
Q psy18075 354 NDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGN-TLGVNAAKAIADALSKHE 432 (999)
Q Consensus 354 ~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N-~L~~~~~~~L~~~L~~~~ 432 (999)
+..+..+...+.+ .+.+++++|+.- .+...+..+...|+++++|++.++ .|++.....+++.-+++.
T Consensus 126 g~VV~~~~~Rcgg-------~lk~LSlrG~r~-----v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~ 193 (483)
T KOG4341|consen 126 GGVVENMISRCGG-------FLKELSLRGCRA-----VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR 193 (483)
T ss_pred CcceehHhhhhcc-------cccccccccccc-----CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh
Confidence 3444445444442 566889998854 455677788889999999999988 778877777776544433
Q ss_pred hhHHHhhhhcccCCCccccc-hHHHHhhhhhhccCCcccEEEecCCC-CCCccHHHHHHHHhccCCCCccEEEccCC-cc
Q psy18075 433 HFKRALWKDMFTGRMKTEIP-DALRYLGNGLQQAGARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNNN-GL 509 (999)
Q Consensus 433 ~Lk~ll~~nl~t~rl~~~ip-~~l~~L~~~L~~~~~sL~~LdLS~N~-L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~L 509 (999)
.+.. .+. ..+. ..++. +...|++|++|++|++. |+..|++.+... |..++.+.+.+| .+
T Consensus 194 ~l~L------~~c---~~iT~~~Lk~----la~gC~kL~~lNlSwc~qi~~~gv~~~~rG-----~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 194 HLNL------HSC---SSITDVSLKY----LAEGCRKLKYLNLSWCPQISGNGVQALQRG-----CKELEKLSLKGCLEL 255 (483)
T ss_pred hhhh------ccc---chhHHHHHHH----HHHhhhhHHHhhhccCchhhcCcchHHhcc-----chhhhhhhhcccccc
Confidence 3311 110 0000 12222 34468899999999885 577888887665 456777777776 34
Q ss_pred CchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC-CCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHh
Q psy18075 510 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR-NRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAF 587 (999)
Q Consensus 510 t~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~-N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL 587 (999)
+.+....++.. + .-+.++++.. |.++|.++..++.. +..|+.|+.+++. +++.-+.+|.
T Consensus 256 ~le~l~~~~~~---~----------~~i~~lnl~~c~~lTD~~~~~i~~~---c~~lq~l~~s~~t~~~d~~l~aLg--- 316 (483)
T KOG4341|consen 256 ELEALLKAAAY---C----------LEILKLNLQHCNQLTDEDLWLIACG---CHALQVLCYSSCTDITDEVLWALG--- 316 (483)
T ss_pred cHHHHHHHhcc---C----------hHhhccchhhhccccchHHHHHhhh---hhHhhhhcccCCCCCchHHHHHHh---
Confidence 43333333322 2 2255666544 55888887665554 6778888888775 6666544444
Q ss_pred hhcccCceeeccCC-CCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC-CCCCcchh
Q psy18075 588 EENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGL 665 (999)
Q Consensus 588 ~~~~~Lr~LdLS~N-~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~ 665 (999)
.++++|+.|-|+.+ ++++.|+..++. .++.|+.+++.+|.....+ .|+..-.+|+.|+.|.|++| .|+++|..
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 35789999999887 588888887776 5778999999999876554 36666667899999999988 57888888
Q ss_pred hHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 666 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 666 ~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
.+...-.....|..+.|++++...+ +.-+.+..+++|+.+++.+-
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITD---ATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhhhccccccccceeeecCCCCchH---HHHHHHhhCcccceeeeech
Confidence 8877777788899999999886653 45567778888888877654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=144.42 Aligned_cols=232 Identities=21% Similarity=0.284 Sum_probs=115.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..|++++|.++. ++..+ .++|+.|+|++|.|..- ...+.. +|+.+ ++..+++. .+|.
T Consensus 200 ~L~~L~Ls~N~Lts--------LP~~l--~~nL~~L~Ls~N~LtsL-P~~l~~------~L~~L---~Ls~N~L~-~LP~ 258 (754)
T PRK15370 200 QITTLILDNNELKS--------LPENL--QGNIKTLYANSNQLTSI-PATLPD------TIQEM---ELSINRIT-ELPE 258 (754)
T ss_pred CCcEEEecCCCCCc--------CChhh--ccCCCEEECCCCccccC-Chhhhc------cccEE---ECcCCccC-cCCh
Confidence 56778888887742 22222 24788888888877631 111111 11111 11122222 3333
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+|+.|+|++|+|+.... .+ +++|+.|+|++|+|+.. ...+
T Consensus 259 ~l----------~s~L~~L~Ls~N~L~~LP~-~l--------~~sL~~L~Ls~N~Lt~L-----P~~l------------ 302 (754)
T PRK15370 259 RL----------PSALQSLDLFHNKISCLPE-NL--------PEELRYLSVYDNSIRTL-----PAHL------------ 302 (754)
T ss_pred hH----------hCCCCEEECcCCccCcccc-cc--------CCCCcEEECCCCccccC-----cccc------------
Confidence 22 1256666666666653221 01 13566666666665421 1110
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|++.. ++..+ .++|+.|++++|.++. ++..+. ++|+.|+|++|.|. .++.
T Consensus 303 p~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~-----~LP~ 363 (754)
T PRK15370 303 PSGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQIT-----VLPE 363 (754)
T ss_pred hhhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhhc--CcccEEECCCCCCC-----cCCh
Confidence 1236666666666652 11111 2466666677666653 222222 46677777776665 2333
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
.+ .++|+.|+|++|.|+. ++..+. ..|+.|++++|+|..-. ..+...+...+.+..|+|.+|+|+...
T Consensus 364 ~l--p~~L~~LdLs~N~Lt~-----LP~~l~--~sL~~LdLs~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 364 TL--PPTITTLDVSRNALTN-----LPENLP--AALQIMQASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred hh--cCCcCEEECCCCcCCC-----CCHhHH--HHHHHHhhccCCcccCc-hhHHHHhhcCCCccEEEeeCCCccHHH
Confidence 33 2466777777776652 222221 24666677777665311 123333444566667777777776543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=139.23 Aligned_cols=182 Identities=19% Similarity=0.192 Sum_probs=97.5
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|+|++|.|.... ..+ .+|+.|+|++|+|+.. .. .+++|+.|+|++|+
T Consensus 262 ~sL~~L~Ls~N~L~~Lp-----~lp-----~~L~~L~Ls~N~Lt~L-----P~-------------~p~~L~~LdLS~N~ 313 (788)
T PRK15387 262 PGLLELSIFSNPLTHLP-----ALP-----SGLCKLWIFGNQLTSL-----PV-------------LPPGLQELSVSDNQ 313 (788)
T ss_pred cccceeeccCCchhhhh-----hch-----hhcCEEECcCCccccc-----cc-------------cccccceeECCCCc
Confidence 46788888888775322 111 3688888888887621 11 12458888888888
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCC---------------cccc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG---------------AIPL 611 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G---------------~~~L 611 (999)
|..-. .+ ..+|+.|++++|.|+. ++. + ..+|+.|+|++|.|..-. +..+
T Consensus 314 L~~Lp--~l------p~~L~~L~Ls~N~L~~-----LP~-l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 314 LASLP--AL------PSELCKLWAYNNQLTS-----LPT-L--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 377 (788)
T ss_pred cccCC--CC------cccccccccccCcccc-----ccc-c--ccccceEecCCCccCCCCCCCcccceehhhccccccC
Confidence 76321 11 1234455555555442 111 0 024455555555444200 0011
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+. ...+|+.|+|++|.|+.. +.. ..+|+.|++++|.|+. ++. ...+|+.|++++|+|+.
T Consensus 378 P~---l~~~L~~LdLs~N~Lt~L-----P~l---~s~L~~LdLS~N~Lss-----IP~---l~~~L~~L~Ls~NqLt~-- 436 (788)
T PRK15387 378 PA---LPSGLKELIVSGNRLTSL-----PVL---PSELKELMVSGNRLTS-----LPM---LPSGLLSLSVYRNQLTR-- 436 (788)
T ss_pred cc---cccccceEEecCCcccCC-----CCc---ccCCCEEEccCCcCCC-----CCc---chhhhhhhhhccCcccc--
Confidence 11 113566667776666521 111 1456777777776663 111 12356667777777653
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
|+..+..++.|..|++++|.-.
T Consensus 437 ---LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 437 ---LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ---cChHHhhccCCCeEECCCCCCC
Confidence 5666777778888888777654
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-11 Score=134.47 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=69.4
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccc-cccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTL-ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sL-e~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
....++++|++. .++..+..+..+ ..+.++.|.+.- .+..++..+.|..|+|++|.+.+ ++..+
T Consensus 390 Vt~VnfskNqL~-----elPk~L~~lkelvT~l~lsnn~isf-----v~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~ 454 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-----ELPKRLVELKELVTDLVLSNNKISF-----VPLELSQLQKLTFLDLSNNLLND-----LPEEM 454 (565)
T ss_pred eEEEecccchHh-----hhhhhhHHHHHHHHHHHhhcCcccc-----chHHHHhhhcceeeecccchhhh-----cchhh
Confidence 445555555544 233333333322 234455555442 23344555566666666665552 44444
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 695 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L 695 (999)
+.+..|+.|+++.|+|. .+++++-....|+.+-.++|+|+... +..++++.+|..|||.+|.+.. +
T Consensus 455 ~~lv~Lq~LnlS~NrFr-----~lP~~~y~lq~lEtllas~nqi~~vd----~~~l~nm~nL~tLDL~nNdlq~-----I 520 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFR-----MLPECLYELQTLETLLASNNQIGSVD----PSGLKNMRNLTTLDLQNNDLQQ-----I 520 (565)
T ss_pred hhhhhhheecccccccc-----cchHHHhhHHHHHHHHhccccccccC----hHHhhhhhhcceeccCCCchhh-----C
Confidence 55555666666666553 23333333334444444445544321 1234445555555555554422 4
Q ss_pred HHHHhcCCCCCEEeCCCC
Q psy18075 696 EKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~N 713 (999)
+..++++.+|++|++++|
T Consensus 521 Pp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGN 538 (565)
T ss_pred ChhhccccceeEEEecCC
Confidence 445555555555555554
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=139.56 Aligned_cols=227 Identities=26% Similarity=0.251 Sum_probs=124.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.++++.+.+ ..+++.+..|.+|+.|+..+|.|.. -... +-....|+.+....+-. +.+|+
T Consensus 242 nl~~~dis~n~l--------~~lp~wi~~~~nle~l~~n~N~l~~-lp~r----i~~~~~L~~l~~~~nel----~yip~ 304 (1081)
T KOG0618|consen 242 NLQYLDISHNNL--------SNLPEWIGACANLEALNANHNRLVA-LPLR----ISRITSLVSLSAAYNEL----EYIPP 304 (1081)
T ss_pred cceeeecchhhh--------hcchHHHHhcccceEecccchhHHh-hHHH----HhhhhhHHHHHhhhhhh----hhCCC
Confidence 556666666665 4566788899999999999998832 2222 22344443332221111 12333
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhc-------------------cCCCCccEEEccCCccCchhh
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS-------------------SCCFALEELKLNNNGLGITGC 514 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s-------------------~~c~~L~~L~Ls~n~Lt~~g~ 514 (999)
.+. ...+|++|+|..|+|.......+.-...+ ...+.|+.|+|.+|.+++..+
T Consensus 305 ~le--------~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 305 FLE--------GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred ccc--------ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 222 24689999999999976554333222110 011245556666666665555
Q ss_pred hHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCc
Q psy18075 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 594 (999)
Q Consensus 515 ~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr 594 (999)
..+..+ .+||.|+|++|+|+.-.+ ..+.++..|++|+||||+++. |+..+..++.|+
T Consensus 377 p~l~~~--------------~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 377 PVLVNF--------------KHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSGNKLTT-----LPDTVANLGRLH 433 (1081)
T ss_pred hhhccc--------------cceeeeeecccccccCCH----HHHhchHHhHHHhcccchhhh-----hhHHHHhhhhhH
Confidence 444332 346666666666653222 233445566666666666653 445555566666
Q ss_pred eeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 595 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 595 ~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
.|...+|.|. .++ .+..++.|+.+|++.|+++... +..++.. ++|++|||+||.
T Consensus 434 tL~ahsN~l~-----~fP-e~~~l~qL~~lDlS~N~L~~~~---l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-----SFP-ELAQLPQLKVLDLSCNNLSEVT---LPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-----ech-hhhhcCcceEEecccchhhhhh---hhhhCCC-cccceeeccCCc
Confidence 6666666665 233 3445566666666666665221 3333322 566666666663
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-10 Score=141.24 Aligned_cols=164 Identities=22% Similarity=0.260 Sum_probs=112.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|+|++|+|..... + + .+|+.|++++|+|+. +.. .+.+|+.|+|++|+
T Consensus 302 ~~L~~LdLS~N~L~~Lp~--l------p--~~L~~L~Ls~N~L~~-----LP~-------------lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 302 PGLQELSVSDNQLASLPA--L------P--SELCKLWAYNNQLTS-----LPT-------------LPSGLQELSVSDNQ 353 (788)
T ss_pred cccceeECCCCccccCCC--C------c--ccccccccccCcccc-----ccc-------------cccccceEecCCCc
Confidence 456666666666653221 1 1 246666666666642 111 12469999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|.. ++.. ..+|+.|++++|.|+. ++.. ..+|+.|+|++|.|+. ++. ..++|+.|++
T Consensus 354 Ls~-----LP~l---p~~L~~L~Ls~N~L~~-----LP~l---~~~L~~LdLs~N~Lt~-----LP~---l~s~L~~LdL 409 (788)
T PRK15387 354 LAS-----LPTL---PSELYKLWAYNNRLTS-----LPAL---PSGLKELIVSGNRLTS-----LPV---LPSELKELMV 409 (788)
T ss_pred cCC-----CCCC---Ccccceehhhcccccc-----Cccc---ccccceEEecCCcccC-----CCC---cccCCCEEEc
Confidence 884 2221 3578889999999874 2322 2479999999999883 332 1358999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHH
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 695 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L 695 (999)
++|.|+. ++.. ..+|+.|+|++|+|+. ++..+..+++|+.|+|++|+++..-...+
T Consensus 410 S~N~Lss-----IP~l---~~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 410 SGNRLTS-----LPML---PSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCcCCC-----CCcc---hhhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999873 2221 2568899999999984 67778889999999999999997544444
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-12 Score=138.13 Aligned_cols=173 Identities=27% Similarity=0.346 Sum_probs=116.3
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
.|..|+..+|++...... +.. |.+|..|++.+|++.......++ ++.|++|++..|-+
T Consensus 138 ~l~dl~~~~N~i~slp~~-~~~------~~~l~~l~~~~n~l~~l~~~~i~---------------m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPED-MVN------LSKLSKLDLEGNKLKALPENHIA---------------MKRLKHLDCNSNLL 195 (565)
T ss_pred hhhhhhccccccccCchH-HHH------HHHHHHhhccccchhhCCHHHHH---------------HHHHHhcccchhhh
Confidence 455566666666433211 111 12455666666665433322222 13488888888877
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEc
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNL 626 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdL 626 (999)
+ .++.-++.+.+|+.|+|..|+|.. ++ .|..|..|+.|.++.|.|.. ++ +.++++.+|..|||
T Consensus 196 ~-----tlP~~lg~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 196 E-----TLPPELGGLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDL 259 (565)
T ss_pred h-----cCChhhcchhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeec
Confidence 6 466777778888888888888873 33 67778888888888888873 33 34457888888888
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+|.++. ++..+....+|..||+|+|.|+. ++..++++ +|+.|-+.||++..
T Consensus 260 RdNklke-----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 260 RDNKLKE-----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccccc-----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHH
Confidence 8888863 45555556788888888888885 56677777 88888888888754
|
|
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-11 Score=132.73 Aligned_cols=190 Identities=24% Similarity=0.252 Sum_probs=103.6
Q ss_pred CCcccEEEecCCCC-CCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~N~L-~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
+++++.||||.|-| .-..+..|++.| |+|+.|+|+.|.+..-....... ..++|+.|.|+.
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqL-----p~Le~LNls~Nrl~~~~~s~~~~-------------~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQL-----PSLENLNLSSNRLSNFISSNTTL-------------LLSHLKQLVLNS 206 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhc-----ccchhcccccccccCCccccchh-------------hhhhhheEEecc
Confidence 45666666666666 334444444443 46666666666653211111111 123467777777
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|.|+...+. ..+..+++|+.|+|..|. +. +.+. .......|+.|||++|.+-+.. ....+..++.|..
T Consensus 207 CGls~k~V~---~~~~~fPsl~~L~L~~N~~~~---~~~~--~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 207 CGLSWKDVQ---WILLTFPSLEVLYLEANEIIL---IKAT--STKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQ 275 (505)
T ss_pred CCCCHHHHH---HHHHhCCcHHHhhhhcccccc---eecc--hhhhhhHHhhccccCCcccccc---cccccccccchhh
Confidence 777644333 334446777777777774 22 1111 1222456777777777665421 1123445667777
Q ss_pred EEcCCCCCCccchHHHHHh-----ccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 624 LNLGDCLLKSAGASSIAKY-----LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~a-----L~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|+++.|++.+.. ++.+ ....++|+.|+++.|+|.+- .-...+...++|+.|.+.+|.++-+
T Consensus 276 Lnls~tgi~si~---~~d~~s~~kt~~f~kL~~L~i~~N~I~~w---~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIA---EPDVESLDKTHTFPKLEYLNISENNIRDW---RSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhc---CCCccchhhhcccccceeeecccCccccc---cccchhhccchhhhhhccccccccc
Confidence 777777665322 1111 23347788888888877542 1223445567777777777777654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-10 Score=137.98 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=140.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.++- ++..+. .+|+.|+|++|.|.. ....+.. +|+.+ ++..+++. .+|.
T Consensus 221 nL~~L~Ls~N~Lts--------LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~s------~L~~L---~Ls~N~L~-~LP~ 279 (754)
T PRK15370 221 NIKTLYANSNQLTS--------IPATLP--DTIQEMELSINRITE-LPERLPS------ALQSL---DLFHNKIS-CLPE 279 (754)
T ss_pred CCCEEECCCCcccc--------CChhhh--ccccEEECcCCccCc-CChhHhC------CCCEE---ECcCCccC-cccc
Confidence 68899999998842 222232 479999999999874 2222221 22221 22233333 3443
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ +.+|+.|+|++|+|+..... + + .+|+.|+|++|.++.. ... .
T Consensus 280 ~l----------~~sL~~L~Ls~N~Lt~LP~~-l------p--~sL~~L~Ls~N~Lt~L-----P~~------------l 323 (754)
T PRK15370 280 NL----------PEELRYLSVYDNSIRTLPAH-L------P--SGITHLNVQSNSLTAL-----PET------------L 323 (754)
T ss_pred cc----------CCCCcEEECCCCccccCccc-c------h--hhHHHHHhcCCccccC-----Ccc------------c
Confidence 21 24799999999999754311 1 1 3689999999998632 111 1
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|.++. ++..+ .++|+.|+|++|+|+. ++..+. +.|+.|+|++|.|. .++.
T Consensus 324 ~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt-----~LP~ 384 (754)
T PRK15370 324 PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALT-----NLPE 384 (754)
T ss_pred cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCC-----CCCH
Confidence 2469999999999874 33333 3689999999999873 344332 68999999999987 3554
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 662 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~ 662 (999)
.+. ..|+.|++++|+|... ...++..+...+.+..|+|.+|+|...
T Consensus 385 ~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 385 NLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred hHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccHH
Confidence 443 3799999999998732 223555555668999999999999853
|
|
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-10 Score=127.99 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=149.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.+++.++.. ...+.+ .....|++++.|||++|-|.. ...+++.++
T Consensus 122 kL~~IsLdn~~V---~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~e------------------------ 169 (505)
T KOG3207|consen 122 KLREISLDNYRV---EDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAE------------------------ 169 (505)
T ss_pred hhhheeecCccc---cccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHH------------------------
Confidence 366788888877 333332 566788999999999886643 222222222
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+++|+.|+||.|.+.-.--......+ +.|+.|.|+.|+|+-..+..+ +..+
T Consensus 170 -----------qLp~Le~LNls~Nrl~~~~~s~~~~~l-----~~lK~L~l~~CGls~k~V~~~---~~~f--------- 221 (505)
T KOG3207|consen 170 -----------QLPSLENLNLSSNRLSNFISSNTTLLL-----SHLKQLVLNSCGLSWKDVQWI---LLTF--------- 221 (505)
T ss_pred -----------hcccchhcccccccccCCccccchhhh-----hhhheEEeccCCCCHHHHHHH---HHhC---------
Confidence 346889999999988432222222222 579999999999985554444 4444
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
++|+.|.|..|. +.++... ..+.++.|++|+|++|.+-+.. .......++.|+.|+++.+.|.+-. ++.
T Consensus 222 -Psl~~L~L~~N~--~~~~~~~--~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~---~~d 290 (505)
T KOG3207|consen 222 -PSLEVLYLEANE--IILIKAT--STKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIA---EPD 290 (505)
T ss_pred -CcHHHhhhhccc--ccceecc--hhhhhhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhc---CCC
Confidence 459999999985 2222222 2233678999999999876542 2245566899999999999887421 111
Q ss_pred c-----ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEE
Q psy18075 614 A-----LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 680 (999)
Q Consensus 614 a-----L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~L 680 (999)
+ ....++|+.|++..|.+.+-- . ...++..++|++|.+-.|.++.+--.+-...+...++|..|
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I~~w~--s-l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~L 359 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNIRDWR--S-LNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKL 359 (505)
T ss_pred ccchhhhcccccceeeecccCcccccc--c-cchhhccchhhhhhcccccccccccceeEEeeeehhhhhhh
Confidence 1 345679999999999986422 1 23355668899999999988765432323334444455444
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-09 Score=115.04 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=133.0
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
+.|++||||+..|+...+..+ | ..|.+|+.|.|.++.+.+.-+..||+. .+|+.|+|+.+.
T Consensus 185 sRlq~lDLS~s~it~stl~~i---L--s~C~kLk~lSlEg~~LdD~I~~~iAkN--------------~~L~~lnlsm~s 245 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---L--SQCSKLKNLSLEGLRLDDPIVNTIAKN--------------SNLVRLNLSMCS 245 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---H--HHHHhhhhccccccccCcHHHHHHhcc--------------ccceeecccccc
Confidence 468999999988876655544 3 247799999999999987666666543 559999998755
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCC--CCCcCCcccccccccCCCCCcE
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN--TITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N--~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
++..++..+ +.+|+.|.+|+|+.|.++.+.++.+...++ ++|+.|+|+++ .+.+. .+.....+|++|.+
T Consensus 246 G~t~n~~~ll---~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 246 GFTENALQLL---LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVH 317 (419)
T ss_pred ccchhHHHHH---HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceee
Confidence 776666554 556888999999999988776666555443 67899999885 34333 34444457899999
Q ss_pred EEcCCCC-CCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 624 LNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 624 LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
|||++|. +++ + .+..+.+.+.|++|.++.|..-.. ...-.+...|+|.+||+.|+-
T Consensus 318 LDLSD~v~l~~-~---~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKN-D---CFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCc-h---HHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEecccc
Confidence 9999875 443 4 355666778999999999854321 112235678899999988764
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.86 E-value=8e-09 Score=135.16 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=72.3
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCC-CCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~-Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
++|+.|+|++|.... .++..+..+++|+.|+|++|. +. .++..+ .+++|+.|+|++|..- ..++.
T Consensus 778 ~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~~L~-----~LP~~~-~L~sL~~L~Ls~c~~L----~~~p~ 843 (1153)
T PLN03210 778 PSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCINLE-----TLPTGI-NLESLESLDLSGCSRL----RTFPD 843 (1153)
T ss_pred ccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCCCcC-----eeCCCC-CccccCEEECCCCCcc----ccccc
Confidence 456666666664322 245566667777777777653 33 233333 4567777777776421 01111
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC-CChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~-Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
...+|+.|+|++|.|.. ++..+..+++|+.|+|++|. +.. +...+..+++|+.+++++.
T Consensus 844 ---~~~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 ---ISTNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ---cccccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCC
Confidence 12567777777777763 55666777788888887743 332 3334455667777776654
|
syringae 6; Provisional |
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-09 Score=120.85 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=31.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHH
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLL 517 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~L 517 (999)
+.-++|+|..|+|+..+-..|..+ ++|+.|+|++|+|+..+-..+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l------~~LRrLdLS~N~Is~I~p~AF 111 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL------HRLRRLDLSKNNISFIAPDAF 111 (498)
T ss_pred CcceEEEeccCCcccCChhhccch------hhhceecccccchhhcChHhh
Confidence 466778888888877777777544 578888888887765444333
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-09 Score=115.64 Aligned_cols=161 Identities=21% Similarity=0.197 Sum_probs=79.9
Q ss_pred hccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEE
Q psy18075 463 QQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 541 (999)
Q Consensus 463 ~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~ 541 (999)
+..|++|+.|.|.++++.+.-+..+++ + .+|+.|+|+.| +|+..+...+.+.+. .|..|+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAk----N--~~L~~lnlsm~sG~t~n~~~ll~~scs-------------~L~~LN 266 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAK----N--SNLVRLNLSMCSGFTENALQLLLSSCS-------------RLDELN 266 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhc----c--ccceeeccccccccchhHHHHHHHhhh-------------hHhhcC
Confidence 345566666666666665554444433 1 35666666665 555544444433222 266666
Q ss_pred ccCCCCCchhHHHHHHHHhhcccccccccCCCc--cCchhhhhhhHHhhhcccCceeeccCC-CCCcCCcccccccccCC
Q psy18075 542 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG--IYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKL 618 (999)
Q Consensus 542 Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~--It~~g~~~La~aL~~~~~Lr~LdLS~N-~Lsd~G~~~L~~aL~~l 618 (999)
|+++.+..+.+..+...+ ..+|..|+|+|+. +... .++.....||+|..||||+| .+++ + +...+.++
T Consensus 267 lsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~-~---~~~~~~kf 337 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKN-D---CFQEFFKF 337 (419)
T ss_pred chHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCc-h---HHHHHHhc
Confidence 666665544443332222 2456666666653 2222 33334445666666666654 3333 1 33344455
Q ss_pred CCCcEEEcCCCCCCccchHHHHHh---ccCCCCCCEEEccCC
Q psy18075 619 PSLAILNLGDCLLKSAGASSIAKY---LTDNTTLEDVNLTCN 657 (999)
Q Consensus 619 ~sL~~LdLs~N~L~d~g~~~La~a---L~~~~~L~~LdLs~N 657 (999)
+.|++|.++.|..- ++.. +...|.|.+||+.++
T Consensus 338 ~~L~~lSlsRCY~i------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chheeeehhhhcCC------ChHHeeeeccCcceEEEEeccc
Confidence 56666666666421 1221 223366666666555
|
|
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-10 Score=123.42 Aligned_cols=281 Identities=20% Similarity=0.229 Sum_probs=171.1
Q ss_pred HhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhh-HHHhhh
Q psy18075 362 KKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF-KRALWK 440 (999)
Q Consensus 362 ~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~L-k~ll~~ 440 (999)
+....++. ..+.|.|..|.++.+.+ .+|+..++|+.||||+|.|+..+..+|. +|+ ++ +..+..
T Consensus 60 eVP~~LP~----~tveirLdqN~I~~iP~-------~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~---~l~~Lvlyg 124 (498)
T KOG4237|consen 60 EVPANLPP----ETVEIRLDQNQISSIPP-------GAFKTLHRLRRLDLSKNNISFIAPDAFK-GLA---SLLSLVLYG 124 (498)
T ss_pred cCcccCCC----cceEEEeccCCcccCCh-------hhccchhhhceecccccchhhcChHhhh-hhH---hhhHHHhhc
Confidence 34444554 77889999999854322 3688889999999999999988777665 233 33 222333
Q ss_pred hcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHH-
Q psy18075 441 DMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK- 519 (999)
Q Consensus 441 nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~- 519 (999)
+ +++. .+....+..+..|+.|.+.-|++.-.-...|.++ ++|..|.|-.|.+. .+++
T Consensus 125 ~---NkI~--------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL------~~l~lLslyDn~~q-----~i~~~ 182 (498)
T KOG4237|consen 125 N---NKIT--------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDL------PSLSLLSLYDNKIQ-----SICKG 182 (498)
T ss_pred C---Cchh--------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh------hhcchhcccchhhh-----hhccc
Confidence 1 2221 2222333344577888888888877766666554 57888888887763 3333
Q ss_pred HHhhhccCCcCCCCCCCccEEEccCCC-CCchhHHHHHHHHhhc-------ccccccccCCCccCchhhh-------hh-
Q psy18075 520 ALHDCYESSKKEGSPLALKVFIAGRNR-LENEGAKMLAAVFKKL-------KTLERVEMPQNGIYHVGIT-------AL- 583 (999)
Q Consensus 520 ~L~~~~~~s~~~g~~~sLk~L~Ls~N~-L~d~g~~~L~~~L~~~-------~sLe~LdLs~N~It~~g~~-------~L- 583 (999)
.+. ...+++.+.+..|. +.+-.+++++..+..+ .......+...++...... .+
T Consensus 183 tf~----------~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~ 252 (498)
T KOG4237|consen 183 TFQ----------GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLP 252 (498)
T ss_pred ccc----------chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHH
Confidence 112 22458888888887 4444455555544332 2233333433333221111 11
Q ss_pred --------------hHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCC
Q psy18075 584 --------------SDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648 (999)
Q Consensus 584 --------------a~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~ 648 (999)
+..|..+++|++|+|++|.|+. +. .++.....|++|.|..|.|..- =..++.+...
T Consensus 253 s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-----i~~~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~ls~ 323 (498)
T KOG4237|consen 253 SRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-----IEDGAFEGAAELQELYLTRNKLEFV----SSGMFQGLSG 323 (498)
T ss_pred HhhccccCcCCcChHHHHhhcccceEeccCCCccch-----hhhhhhcchhhhhhhhcCcchHHHH----HHHhhhcccc
Confidence 1246667788888888888874 22 2455667888888888877421 1234556688
Q ss_pred CCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-HHHHHHHHhcC
Q psy18075 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG-VEEMEKLMKSF 702 (999)
Q Consensus 649 L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg-~~~L~~~L~~l 702 (999)
|+.|+|.+|+|+.. -+.++.....|..|+|-.|++.-.. ..-+..+++..
T Consensus 324 L~tL~L~~N~it~~----~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 324 LKTLSLYDNQITTV----APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred ceeeeecCCeeEEE----ecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 88888888888863 2345666778888888888776542 34455555544
|
|
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-10 Score=115.69 Aligned_cols=156 Identities=30% Similarity=0.409 Sum_probs=124.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
.++++.|.||+|+++... ..++++ .+|+.|++++|+|. .+...+.+ .+.|+.|+++-|
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia~l------~nlevln~~nnqie-----~lp~~iss----------l~klr~lnvgmn 89 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIAEL------KNLEVLNLSNNQIE-----ELPTSISS----------LPKLRILNVGMN 89 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHHHh------hhhhhhhcccchhh-----hcChhhhh----------chhhhheecchh
Confidence 457889999999997544 235554 48999999999985 33333333 355999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++. .++.+|+.++.|+.|||..|.+... .++..|-.+..|+-|+|++|.+. .++..++++++|+.|.
T Consensus 90 rl~-----~lprgfgs~p~levldltynnl~e~---~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 90 RLN-----ILPRGFGSFPALEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhh-----cCccccCCCchhhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEe
Confidence 887 4688899999999999999999875 47777777889999999999887 6888888999999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
+.+|.+- .++..++....|++|.+.+|.++-
T Consensus 157 lrdndll-----~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 157 LRDNDLL-----SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eccCchh-----hCcHHHHHHHHHHHHhcccceeee
Confidence 9998763 466777777889999999998773
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-09 Score=108.40 Aligned_cols=132 Identities=21% Similarity=0.290 Sum_probs=56.0
Q ss_pred hcccccccccCCCccCchhhhhhhHHhh-hcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHH
Q psy18075 561 KLKTLERVEMPQNGIYHVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 561 ~~~sLe~LdLs~N~It~~g~~~La~aL~-~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~L 639 (999)
++..+++|+|++|+|+.. ..+. .+.+|+.|+|++|.|.. + +.+..++.|+.|++++|.|++.+. .+
T Consensus 17 n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i~~-~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSISE-GL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HH
T ss_pred cccccccccccccccccc------cchhhhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcccc-ch
Confidence 345788999999988852 2333 36789999999999884 2 356678899999999999976432 12
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
. ..+++|++|+|++|+|.+-+. ...+..+++|+.|+|.+|+++.. ..+-...+..+|+|+.||...
T Consensus 84 ~---~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 D---KNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H---HH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred H---HhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 2 235889999999999987543 24567899999999999999865 445567788899999996644
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-09 Score=108.91 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=44.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHh-hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
.+++|+|.+|.|+. .+.+. .+.+|+.|+|++|+|+.. ..+..++.|+.|++++|.|+. +...
T Consensus 20 ~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~-----i~~~ 82 (175)
T PF14580_consen 20 KLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISS-----ISEG 82 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CHH
T ss_pred cccccccccccccc------ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCc-----cccc
Confidence 45666666666552 12232 245666677777766642 234556677777777777763 2222
Q ss_pred c-cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEc
Q psy18075 615 L-SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINV 682 (999)
Q Consensus 615 L-~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdL 682 (999)
+ ..+++|++|++++|.|.+-+. -..+..+++|+.|+|.+|++.... .+-...+..+|+|+.||-
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETT
T ss_pred hHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcChhheeCC
Confidence 2 235667777777777665432 134556688888888888877553 244556677888888764
|
|
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-10 Score=113.93 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=71.3
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
++.|.||+|+++ .++..+..+.+|+.|++++|+|++ ++..++.++.|+.|+++-|.+. .++.+++
T Consensus 35 ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~-----~lprgfg 99 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLN-----ILPRGFG 99 (264)
T ss_pred hhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhh-----cCccccC
Confidence 444555555554 233334444555555555555542 4445555555555555555544 3455555
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
.++-|+.|||.+|++.... ++.-+..+..|+-|.|+.|.+. .++.-++++++|+.|.++.|.+-. ++
T Consensus 100 s~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~lrdndll~-----lp 166 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILSLRDNDLLS-----LP 166 (264)
T ss_pred CCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEeeccCchhh-----Cc
Confidence 5555555555555554322 2322333344555555555443 234444445555555555544322 34
Q ss_pred HHHhcCCCCCEEeCCCC
Q psy18075 697 KLMKSFGMAAALVLEDD 713 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls~N 713 (999)
+.++.+..|+.|.+.+|
T Consensus 167 keig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 44444444444444444
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=128.60 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCC-CCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHH
Q psy18075 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668 (999)
Q Consensus 590 ~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~ 668 (999)
.++|+.|+|++|.... .++..+..+++|+.|+|++|. +. .++..+ ..++|+.|+|++|..-. .++
T Consensus 777 ~~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~~L~-----~LP~~~-~L~sL~~L~Ls~c~~L~----~~p 842 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCINLE-----TLPTGI-NLESLESLDLSGCSRLR----TFP 842 (1153)
T ss_pred cccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCCCcC-----eeCCCC-CccccCEEECCCCCccc----ccc
Confidence 4678999998886433 467778889999999999885 32 234333 46889999999984321 122
Q ss_pred HhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 669 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 669 ~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
. ...+|+.|+|++|.|.. ++..+..+++|+.|+++++
T Consensus 843 ~---~~~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 843 D---ISTNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred c---cccccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCC
Confidence 1 24689999999999875 6778889999999999874
|
syringae 6; Provisional |
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=111.09 Aligned_cols=287 Identities=18% Similarity=0.238 Sum_probs=186.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccC-CCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG-NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~-N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.+.+|.+.||. ..++..+..+. ..|+.|++|+|.+ -.|++...+.++++.+++..+ .+.|...++++
T Consensus 165 nIehL~l~gc~--~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~l-NlSwc~qi~~~------ 232 (483)
T KOG4341|consen 165 NIEHLALYGCK--KITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYL-NLSWCPQISGN------ 232 (483)
T ss_pred chhhhhhhcce--eccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHh-hhccCchhhcC------
Confidence 57778888886 23666655554 4689999999998 588888888888876544433 12455555442
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
+++.+ ..++..++.+.+.++ .+.+.+.|..+- ..|.-+-++++..| .+++.++..++.....
T Consensus 233 -gv~~~----~rG~~~l~~~~~kGC--~e~~le~l~~~~--~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~-------- 295 (483)
T KOG4341|consen 233 -GVQAL----QRGCKELEKLSLKGC--LELELEALLKAA--AYCLEILKLNLQHCNQLTDEDLWLIACGCHA-------- 295 (483)
T ss_pred -cchHH----hccchhhhhhhhccc--ccccHHHHHHHh--ccChHhhccchhhhccccchHHHHHhhhhhH--------
Confidence 22222 223344555655543 233334343321 23445666776676 5777777666665443
Q ss_pred CCCCCccEEEccCCC-CCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcc
Q psy18075 532 GSPLALKVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI 609 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~ 609 (999)
|+.|..+++. +++.-...| ..++.+|+.|-+.+|+ +++.|++.++. +++.|+.+++.......++
T Consensus 296 -----lq~l~~s~~t~~~d~~l~aL---g~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~-- 362 (483)
T KOG4341|consen 296 -----LQVLCYSSCTDITDEVLWAL---GQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG-- 362 (483)
T ss_pred -----hhhhcccCCCCCchHHHHHH---hcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--
Confidence 7888887643 555433333 2346788888888886 88888777775 4788888888888766555
Q ss_pred cccccccCCCCCcEEEcCCCC-CCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC-C
Q psy18075 610 PLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-F 687 (999)
Q Consensus 610 ~L~~aL~~l~sL~~LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~-I 687 (999)
.|+..-.+++.|+.|.|++|. +++.|...+...-.....|..|-|++++...+ +..+.+..|++|+.+++-+++ +
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD---ATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH---HHHHHHhhCcccceeeeechhhh
Confidence 344444578889999888885 77788777777666668888888998876654 455667788889988887764 4
Q ss_pred ChhcHHHHHHHHhcCCCCCEE
Q psy18075 688 GEEGVEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 688 s~eg~~~L~~~L~~l~~L~~L 708 (999)
+.+++..+ ...+|++++.
T Consensus 440 tk~~i~~~---~~~lp~i~v~ 457 (483)
T KOG4341|consen 440 TKEAISRF---ATHLPNIKVH 457 (483)
T ss_pred hhhhhHHH---HhhCccceeh
Confidence 55444444 3455655555
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-08 Score=114.38 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=123.1
Q ss_pred CCcccEEEecCCCCC-CccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSDNAFG-PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~-~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
..+|++|.|.++.|+ ..|+..|-. +|++|.-.+ . ...+-..+..|..-....-.=..|...+.++
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~--------qLe~LIC~~-S-----l~Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRH--------QLEKLICHN-S-----LDALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHH--------hhhhhhhhc-c-----HHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence 468999999999994 445555533 455543222 2 2233333333321000000012477888888
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|+|. .+-.++.-++.|+.|+|+.|++++. ..+..++.|++|||++|.+.. ++..-..-..|+.|
T Consensus 174 N~L~-----~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 174 NRLV-----LMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLL 237 (1096)
T ss_pred hhHH-----hHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc-----ccccchhhhhheee
Confidence 9876 4556677788899999999999864 477889999999999999873 33322223359999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+|++|.++. ...+.++.+|+.||+++|-|.+..- ...+..+..|+.|+|.||++--
T Consensus 238 ~lrnN~l~t------L~gie~LksL~~LDlsyNll~~hse---L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALTT------LRGIENLKSLYGLDLSYNLLSEHSE---LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHHh------hhhHHhhhhhhccchhHhhhhcchh---hhHHHHHHHHHHHhhcCCcccc
Confidence 999998763 2345567899999999998876432 2234556789999999998754
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-07 Score=101.96 Aligned_cols=129 Identities=22% Similarity=0.231 Sum_probs=92.1
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
.|++++||+|.|+ .+-+..+-.+.++.|++++|+|+..+ .+..+++|+.||||+|.++. +-..=
T Consensus 285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~-----~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAE-----CVGWH 348 (490)
T ss_pred hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHh-----hhhhH
Confidence 4788888888876 34555666788888888888887643 35667888888888888763 21111
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.++-+++.|.|++|.|.+ ..++++.-+|..||+++|+|..- .-.+.++++|.|+.|.|.+|++..
T Consensus 349 ~KLGNIKtL~La~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~l---deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET------LSGLRKLYSLVNLDLSSNQIEEL---DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhcCEeeeehhhhhHhh------hhhhHhhhhheeccccccchhhH---HHhcccccccHHHHHhhcCCCccc
Confidence 245678888888887742 23456667888888888888752 234567788888888888888764
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-07 Score=98.42 Aligned_cols=105 Identities=23% Similarity=0.267 Sum_probs=51.7
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
++.|++|+|.|...+ .+..+++|..|||++|.++. +...-.++-+++.|.|++|.|.+ ..++.
T Consensus 309 ir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~------LSGL~ 371 (490)
T KOG1259|consen 309 LRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIET------LSGLR 371 (490)
T ss_pred eeEEeccccceeeeh------hhhhcccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhh------hhhhH
Confidence 455555555544211 13334555555555555442 11122233455566666665542 12344
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
++-+|..||+++|+|..... ...+++.|.|++|.|.+|+|..
T Consensus 372 KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhheeccccccchhhHHH---hcccccccHHHHHhhcCCCccc
Confidence 45566666666666542221 2344556777777777776653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=99.18 Aligned_cols=147 Identities=22% Similarity=0.354 Sum_probs=71.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+|+.|++++|.+.. ++..+..+++|+.|++++|++++ ++......+.|+.|++++|.+.+ ++..+
T Consensus 141 nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~ 205 (394)
T COG4886 141 NLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEI 205 (394)
T ss_pred hcccccccccchhh-----hhhhhhccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----Cchhh
Confidence 35566666655552 22334445566666666665553 22222244556666666665552 33322
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 695 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L 695 (999)
.....|++|.+++|.+. .+...+....++..|.+.+|++.. +...+..++.|+.|++++|.++.-
T Consensus 206 ~~~~~L~~l~~~~N~~~-----~~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i----- 270 (394)
T COG4886 206 ELLSALEELDLSNNSII-----ELLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSI----- 270 (394)
T ss_pred hhhhhhhhhhhcCCcce-----ecchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccc-----
Confidence 23334555555555311 122333444555555555555543 123334455555666665555541
Q ss_pred HHHHhcCCCCCEEeCCCC
Q psy18075 696 EKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~N 713 (999)
.. +....+++.|+++++
T Consensus 271 ~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cc-ccccCccCEEeccCc
Confidence 11 445555555555554
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-07 Score=109.97 Aligned_cols=192 Identities=24% Similarity=0.276 Sum_probs=123.9
Q ss_pred hhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHH
Q psy18075 439 WKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 518 (999)
Q Consensus 439 ~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La 518 (999)
+.++..+|+. ++|.....+. .|..|.|+.|.|..... .++.+ ..|+.|+|+.|.++ .++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~--------~Le~liLy~n~~r~ip~-~i~~L------~~lt~l~ls~NqlS-----~lp 137 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFV--------SLESLILYHNCIRTIPE-AICNL------EALTFLDLSSNQLS-----HLP 137 (722)
T ss_pred hhhccccccc-cCchHHHHHH--------HHHHHHHHhccceecch-hhhhh------hHHHHhhhccchhh-----cCC
Confidence 3444444443 4454444432 46666677666643321 12221 36777888888764 344
Q ss_pred HHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeec
Q psy18075 519 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 598 (999)
Q Consensus 519 ~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdL 598 (999)
..+..+ -|+.|.+++|+++ .++..++...+|..|+.+.|.|.. +...+..+..|+.|++
T Consensus 138 ~~lC~l-----------pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 138 DGLCDL-----------PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhcC-----------cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHH
Confidence 444443 3888888888887 356666667788888888888763 5667777788888888
Q ss_pred cCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcC
Q psy18075 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678 (999)
Q Consensus 599 S~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~ 678 (999)
..|++. .+++.+. .-.|..||++.|++. .|+-.++++.+|++|-|.+|.+....+....+ +...-.+
T Consensus 197 rRn~l~-----~lp~El~-~LpLi~lDfScNkis-----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k--GkVHIFK 263 (722)
T KOG0532|consen 197 RRNHLE-----DLPEELC-SLPLIRLDFSCNKIS-----YLPVDFRKMRHLQVLQLENNPLQSPPAQICEK--GKVHIFK 263 (722)
T ss_pred hhhhhh-----hCCHHHh-CCceeeeecccCcee-----ecchhhhhhhhheeeeeccCCCCCChHHHHhc--cceeeee
Confidence 888877 3666665 336888888888875 46777888888888888888888765533222 1223356
Q ss_pred EEEccCC
Q psy18075 679 QINVSEN 685 (999)
Q Consensus 679 ~LdLs~N 685 (999)
+|+..-+
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666655
|
|
| >KOG1947|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=95.00 Aligned_cols=47 Identities=36% Similarity=0.461 Sum_probs=20.8
Q ss_pred CcccEEEecCCC-CCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHH
Q psy18075 467 ARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLS 518 (999)
Q Consensus 467 ~sL~~LdLS~N~-L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La 518 (999)
++|+.|+|+.+. +++.++..++.. |++|+.|.+.+|. +++.|...++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~-----c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASR-----CPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhh-----CCCcceEccCCCCccchhHHHHHH
Confidence 344444444444 444444444332 3444444444443 4444444443
|
|
| >KOG1947|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-06 Score=95.53 Aligned_cols=114 Identities=27% Similarity=0.319 Sum_probs=69.9
Q ss_pred ccCCcccEEEecCC--CCCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHHHHHhhhccCCcCCCCCCCccEE
Q psy18075 464 QAGARLVELDLSDN--AFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVF 540 (999)
Q Consensus 464 ~~~~sL~~LdLS~N--~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L 540 (999)
..+++|+.|+++++ .+...+..... . ...|++|+.|+++.|. +++.+...++.. | ++|+.|
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~--~~~~~~L~~l~l~~~~~isd~~l~~l~~~---c----------~~L~~L 274 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLL-L--LSICRKLKSLDLSGCGLVTDIGLSALASR---C----------PNLETL 274 (482)
T ss_pred hhCchhheecccCcccccccchhHhhh-h--hhhcCCcCccchhhhhccCchhHHHHHhh---C----------CCcceE
Confidence 35677888888763 22332211111 1 1345678888888876 777777777665 2 347788
Q ss_pred EccCCC-CCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeecc
Q psy18075 541 IAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 541 ~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS 599 (999)
.+.++. +++.|+..++.. ++.|++|+|++|. +++.|+..++ ..+++|+.|.+.
T Consensus 275 ~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~~---~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 275 SLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEALL---KNCPNLRELKLL 329 (482)
T ss_pred ccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHHH---HhCcchhhhhhh
Confidence 777776 777777665553 6668888888776 4555555442 336666665543
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.3e-07 Score=106.51 Aligned_cols=174 Identities=25% Similarity=0.327 Sum_probs=132.5
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
--...||+.|++...... ++.+ ..|+.|.|..|.|. .+...+... ..|..|+|+.|++
T Consensus 76 dt~~aDlsrNR~~elp~~-~~~f------~~Le~liLy~n~~r-----~ip~~i~~L----------~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEE-ACAF------VSLESLILYHNCIR-----TIPEAICNL----------EALTFLDLSSNQL 133 (722)
T ss_pred chhhhhccccccccCchH-HHHH------HHHHHHHHHhccce-----ecchhhhhh----------hHHHHhhhccchh
Confidence 445688999999765544 2222 25777777777653 333333332 3489999999998
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
. .++..++.++ |+.|-+++|+++. ++..+...++|..||.+.|.|. .++..++.+.+|+.|++.
T Consensus 134 S-----~lp~~lC~lp-Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 134 S-----HLPDGLCDLP-LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred h-----cCChhhhcCc-ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHh
Confidence 7 4566665554 8999999999984 5666777789999999999987 477778889999999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
.|++. .++.-+. +-.|..||+|+|+|. .|+-.+..++.|++|-|.+|++..-
T Consensus 198 Rn~l~-----~lp~El~-~LpLi~lDfScNkis-----~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 198 RNHLE-----DLPEELC-SLPLIRLDFSCNKIS-----YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhh-----hCCHHHh-CCceeeeecccCcee-----ecchhhhhhhhheeeeeccCCCCCC
Confidence 99874 3555555 466899999999998 4788899999999999999998764
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.4e-06 Score=94.15 Aligned_cols=175 Identities=27% Similarity=0.345 Sum_probs=121.1
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCC-CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCF-ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~-~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
..++.|++.+|.+.+.....- . .. +|+.|++++|.+... ...+ +.++.|+.|++++|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~--~-----~~~nL~~L~l~~N~i~~l-----~~~~----------~~l~~L~~L~l~~N 173 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG--L-----LKSNLKELDLSDNKIESL-----PSPL----------RNLPNLKNLDLSFN 173 (394)
T ss_pred cceeEEecCCcccccCccccc--c-----chhhcccccccccchhhh-----hhhh----------hccccccccccCCc
Confidence 478889999998876543211 1 11 689999999887522 1122 23466999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++.+ ++......+.|+.|++++|+|+. ++..+.....|+.|.+++|.+. .+...+.....+..|.
T Consensus 174 ~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~-----~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 174 DLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSII-----ELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCcce-----ecchhhhhcccccccc
Confidence 9884 34433357889999999999885 3343344556899999998532 2444556677788888
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+.+|.+.+. ...+...+.|+.|++++|.++... . +....+++.|++++|.+..
T Consensus 239 l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~-----~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 239 LSNNKLEDL-----PESIGNLSNLETLDLSNNQISSIS-----S-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cCCceeeec-----cchhccccccceeccccccccccc-----c-ccccCccCEEeccCccccc
Confidence 888877531 344556677999999999988632 2 6678899999999988765
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.1e-05 Score=97.40 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=142.9
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhh---------HHHHHHhhhccCCcCCCCCCCcc
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK---------LLSKALHDCYESSKKEGSPLALK 538 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~---------~La~~L~~~~~~s~~~g~~~sLk 538 (999)
+++..++.+..+....++.+.+ ..|++|.|.+......... .+..++..... .+|+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~-------~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr--------~nL~ 125 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRK-------QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESR--------QNLQ 125 (699)
T ss_pred eeEEeeccceecchhHHHHHhh-------ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHH--------Hhhh
Confidence 7888888888887777665533 3588998887654322222 22222322222 4699
Q ss_pred EEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC
Q psy18075 539 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 539 ~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l 618 (999)
+|++++...-..|. ....-..+|+|++|.+.+-.+....+. ....+.|+|..||+|+.++++ + .++..+
T Consensus 126 ~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~---~lc~sFpNL~sLDIS~TnI~n-----l-~GIS~L 194 (699)
T KOG3665|consen 126 HLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFS---QLCASFPNLRSLDISGTNISN-----L-SGISRL 194 (699)
T ss_pred hcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHH---HHhhccCccceeecCCCCccC-----c-HHHhcc
Confidence 99999877544332 222223379999999999988776544 444567999999999998885 3 577889
Q ss_pred CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc--hhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 619 ~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g--~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
++|+.|.+.+=.+.... .+ ..|..+++|+.||+|.......- +....+.-..+|.|+.||.+++.+..+- +.
T Consensus 195 knLq~L~mrnLe~e~~~--~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~---le 268 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQ--DL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI---LE 268 (699)
T ss_pred ccHHHHhccCCCCCchh--hH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH---HH
Confidence 99999988886665422 12 33556799999999998655543 3333444456899999999999998864 44
Q ss_pred HHHhcCCCCCEEe
Q psy18075 697 KLMKSFGMAAALV 709 (999)
Q Consensus 697 ~~L~~l~~L~~L~ 709 (999)
..+...++|+.+.
T Consensus 269 ~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 269 ELLNSHPNLQQIA 281 (699)
T ss_pred HHHHhCccHhhhh
Confidence 4455666666653
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.7e-07 Score=106.14 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=26.1
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCC
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~L 603 (999)
|..|++++|.++. -.++.++.+|+.||++.|-|.+.. .| ..++.+..|+.|+|-+|.+
T Consensus 234 L~~L~lrnN~l~t------L~gie~LksL~~LDlsyNll~~hs--eL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT------LRGIENLKSLYGLDLSYNLLSEHS--EL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecccHHHh------hhhHHhhhhhhccchhHhhhhcch--hh-hHHHHHHHHHHHhhcCCcc
Confidence 5555555555441 123344455555555555544321 11 1233344555555555544
|
|
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.3e-06 Score=99.06 Aligned_cols=197 Identities=25% Similarity=0.279 Sum_probs=106.7
Q ss_pred CCcccEEEecCCCCCCc-cHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSDNAFGPI-GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~-gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
+.+|++|+|++|.|+.. ++..+ ..|+.|++++|.|..... + ..+..|+.+++++
T Consensus 117 ~~~L~~L~ls~N~I~~i~~l~~l---------~~L~~L~l~~N~i~~~~~--~--------------~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEGLSTL---------TLLKELNLSGNLISDISG--L--------------ESLKSLKLLDLSY 171 (414)
T ss_pred hhcchheeccccccccccchhhc---------cchhhheeccCcchhccC--C--------------ccchhhhcccCCc
Confidence 45778888888888543 32222 357888888887753221 1 1124477888888
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCC--CCc
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP--SLA 622 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~--sL~ 622 (999)
|++...... . +..+.+|+.+.+.+|.|... ..+.....+..+++..|.+..- ..+..+. .|+
T Consensus 172 n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n~i~~~------~~l~~~~~~~L~ 235 (414)
T KOG0531|consen 172 NRIVDIEND---E-LSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDNKISKL------EGLNELVMLHLR 235 (414)
T ss_pred chhhhhhhh---h-hhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccccceec------cCcccchhHHHH
Confidence 877643221 1 35567788888888877643 2222333444456666666531 1122222 267
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l 702 (999)
.+++++|++...+ ..+..+..+..|++..|.+... ..+...+.+..+++..|.+.......-.......
T Consensus 236 ~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 236 ELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISNL------EGLERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred HHhcccCcccccc-----ccccccccccccchhhcccccc------ccccccchHHHhccCcchhcchhhhhcccccccc
Confidence 7777777765321 3445556777777777766642 2234455566666666665432111111113444
Q ss_pred CCCCEEeCCCCC
Q psy18075 703 GMAAALVLEDDE 714 (999)
Q Consensus 703 ~~L~~L~Ls~N~ 714 (999)
+.+..+.+..+.
T Consensus 305 ~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 305 PTLVTLTLELNP 316 (414)
T ss_pred ccccccccccCc
Confidence 555555554443
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=87.93 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHH
Q psy18075 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEME 696 (999)
Q Consensus 619 ~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~ 696 (999)
+++..+-+..|.+.+... .+.....+.+..|+|+.|+|..-+ -..++...+.|.-|.+.+|++.+. |-+...
T Consensus 199 pnv~sv~v~e~PlK~~s~---ek~se~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESS---EKGSEPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred ccchheeeecCcccchhh---cccCCCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccccccCCcceE
Confidence 344444445554443322 222223344445555555555421 123445555566666666655441 222222
Q ss_pred HHHhcCCCCCEEeCC
Q psy18075 697 KLMKSFGMAAALVLE 711 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls 711 (999)
-.+.++++++.|+-+
T Consensus 273 llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 273 LLIARLTKVQVLNGS 287 (418)
T ss_pred EEEeeccceEEecCc
Confidence 234566667776544
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.5e-05 Score=86.89 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=16.2
Q ss_pred CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 647 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 647 ~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
+++..+-+..|+|.+... .+.....+.+-.|+|..|+|+
T Consensus 199 pnv~sv~v~e~PlK~~s~---ek~se~~p~~~~LnL~~~~id 237 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESS---EKGSEPFPSLSCLNLGANNID 237 (418)
T ss_pred ccchheeeecCcccchhh---cccCCCCCcchhhhhcccccc
Confidence 444444444454443221 112223334444445555443
|
|
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.4e-06 Score=102.07 Aligned_cols=174 Identities=26% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
..+|..|+|.+|.|....-. + ..|.+|++|+|++|.|+... .+.. ++.|+.|++++|
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~-l------~~~~~L~~L~ls~N~I~~i~--~l~~--------------l~~L~~L~l~~N 150 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL-L------SSLVNLQVLDLSFNKITKLE--GLST--------------LTLLKELNLSGN 150 (414)
T ss_pred ccceeeeeccccchhhcccc-h------hhhhcchheecccccccccc--chhh--------------ccchhhheeccC
Confidence 35666666666666332210 1 12345666666666654211 1111 122556666666
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
.|... ..+..+..|+.+++++|.+....-. . +..+..|+.+++.+|.+.. .+.+.....+..++
T Consensus 151 ~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~------i~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 151 LISDI------SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIRE------IEGLDLLKKLVLLS 214 (414)
T ss_pred cchhc------cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhc------ccchHHHHHHHHhh
Confidence 65531 1223345555666666655542110 0 2445555566666655542 11222233333345
Q ss_pred cCCCCCCccchHHHHHhccCCC--CCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNT--TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~--~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+..|.+... ..+.... +|+.+++++|.+... ...+.....+..|++..|.+..
T Consensus 215 l~~n~i~~~------~~l~~~~~~~L~~l~l~~n~i~~~-----~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 215 LLDNKISKL------EGLNELVMLHLRELYLSGNRISRS-----PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccccceec------cCcccchhHHHHHHhcccCccccc-----cccccccccccccchhhccccc
Confidence 555554321 1111112 255666666655531 1334445556666666665544
|
|
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.7e-05 Score=85.53 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=50.1
Q ss_pred ccCCCCCcEEEcCCCCCCc-cchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 615 LSKLPSLAILNLGDCLLKS-AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d-~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
++.+++|+.|.+++|.++. .|+..++. .+++|++|+|++|+|..- .. ...++...+|..|++.+|..+. -..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~Nki~~l--st-l~pl~~l~nL~~Ldl~n~~~~~-l~d 133 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSGNKIKDL--ST-LRPLKELENLKSLDLFNCSVTN-LDD 133 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecCCccccc--cc-cchhhhhcchhhhhcccCCccc-ccc
Confidence 3445566666666663221 22222332 347777777777776641 11 2344556667777777776554 122
Q ss_pred HHHHHHhcCCCCCEEeCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N 713 (999)
.-...+..+++|++|+-.+-
T Consensus 134 yre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHHHHhhhhcccccccc
Confidence 33455666777777755443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.6e-05 Score=91.64 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=63.1
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
++.|+|++|.+... ++..+..+++|+.|+|++|.|+.. ++..+..+++|+.|+|++|.+.. .++..+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 66677777766532 344455666777777777766542 45556666777777777776664 3455566
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCC
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNE 658 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~ 658 (999)
.+++|+.|+|++|.++.. ++..+... .++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGR----VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCccccc----CChHHhhccccCceEEecCCc
Confidence 666777777777766522 23333222 345566666664
|
|
| >KOG4242|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00015 Score=83.53 Aligned_cols=297 Identities=17% Similarity=0.062 Sum_probs=177.2
Q ss_pred ccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchH
Q psy18075 375 STKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDA 454 (999)
Q Consensus 375 l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~ 454 (999)
+..++|+.|.+ +++.+..++. =+.-..+.+++|+.|...++....+......+ .++.+-... .. ..
T Consensus 189 ~~pl~lr~c~l---sskfis~l~~-qsg~~~lteldls~n~~Kddip~~~n~~a~~~-vl~~ld~s~---tg------ir 254 (553)
T KOG4242|consen 189 GNPLSLRVCEL---SSKFISKLLI-QSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL-VLFKLDRST---TG------IR 254 (553)
T ss_pred CCccchhhhhh---hhhHHHHhhh-hhccccccccccccCCCCccchhHHHHhhhhh-hhhcccccc---cc------cc
Confidence 34477888887 6666655551 11224588999999988887665554332211 111110000 00 01
Q ss_pred HHHhhhhhh-ccCCcccEEEecCCCCCC----ccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCc
Q psy18075 455 LRYLGNGLQ-QAGARLVELDLSDNAFGP----IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSK 529 (999)
Q Consensus 455 l~~L~~~L~-~~~~sL~~LdLS~N~L~~----~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~ 529 (999)
+..+...+. .+-..|+..+++.|.... .+.....+..... +++ +|++.+|....+....+--.+..+.
T Consensus 255 lD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~--~sg-hln~~~~~~psE~lks~LLgla~ne---- 327 (553)
T KOG4242|consen 255 LDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPD--PSG-HLNSRPRYTPSEKLKSMLLGLAENE---- 327 (553)
T ss_pred hhhcccccccccccccchhhhccCCCCcccccccccccccccCcC--ccc-ccccccccCchhhhhhhhccccccc----
Confidence 122222222 233578888888887632 3333333333222 367 8888888876555544433333321
Q ss_pred CCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCC-C--CCcC
Q psy18075 530 KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN-T--ITYK 606 (999)
Q Consensus 530 ~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N-~--Lsd~ 606 (999)
++.=-.+++..|...+..+ + ++-..-..+++|.++.|.+..+|-..+ .+...+.++.+.+.+- . +.+.
T Consensus 328 ----~t~g~rldl~~cp~~~a~v--l-eaci~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s 398 (553)
T KOG4242|consen 328 ----ATLGARLDLRRCPLERAEV--L-EACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDS 398 (553)
T ss_pred ----ccccccCChhhccccccch--h-hccccceeeeEeecccccccccccccc--ceeeccccccccccccCCceeccc
Confidence 1223355666655553322 1 111112358889999988877765444 5566788888888653 2 2222
Q ss_pred CcccccccccC--CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccC
Q psy18075 607 GAIPLGQALSK--LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684 (999)
Q Consensus 607 G~~~L~~aL~~--l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~ 684 (999)
+.......+.. .--+..+.++.|.++ .++..+...+...+.+.+|++++|..++.|+..++++++.+.+++.+..+.
T Consensus 399 ~~~a~~v~k~~~~~g~l~el~ls~~~lk-a~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~ 477 (553)
T KOG4242|consen 399 STEAPPVSKKSRTHGVLAELSLSPGPLK-AGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSL 477 (553)
T ss_pred cccchhhhhhhcccccccCcccCCCccc-ccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCC
Confidence 22222222222 226788888999887 456666667777799999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHhcC
Q psy18075 685 NQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 685 N~Is~eg~~~L~~~L~~l 702 (999)
|.++..|..-+...+..+
T Consensus 478 n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 478 NLPEDPGLGPRNEERPLN 495 (553)
T ss_pred CCccccccchhhhhcccc
Confidence 999888877777766655
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=90.14 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=27.5
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCC
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Ls 604 (999)
+|+.|+|++|.+... ++..+..+++|+.|+|++|.++.. ++..+..+++|+.|+|++|.++
T Consensus 443 ~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 443 HLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHhcCCCCCEEECcCCccc
Confidence 355555555544321 233344444555555555544432 3334444445555555555444
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=88.57 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred CcccEEEecCCCCCCcc-HHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 467 ARLVELDLSDNAFGPIG-VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~g-v~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
.+|++||+++...-..+ ...++.. +|.|++|.+++-.+.......++ ... ++|..||+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~dF~~lc---~sF----------pNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDNDDFSQLC---ASF----------PNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecchhHHHHh---hcc----------CccceeecCCC
Confidence 35666666665442222 2233333 25556665555544332222221 111 23555555555
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
++++- .+++.+++|+.|.+.+-.+.
T Consensus 184 nI~nl------~GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 184 NISNL------SGISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred CccCc------HHHhccccHHHHhccCCCCC
Confidence 55431 34444555555555554444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00016 Score=61.37 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=5.2
Q ss_pred CCCCCCEEEccCC
Q psy18075 645 DNTTLEDVNLTCN 657 (999)
Q Consensus 645 ~~~~L~~LdLs~N 657 (999)
.+++|++|++++|
T Consensus 47 ~l~~L~~L~l~~N 59 (61)
T PF13855_consen 47 NLPNLRYLDLSNN 59 (61)
T ss_dssp TSTTESEEEETSS
T ss_pred CCCCCCEEeCcCC
Confidence 3344444444443
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00022 Score=60.54 Aligned_cols=61 Identities=31% Similarity=0.492 Sum_probs=36.7
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCC
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L 631 (999)
++|++|+|++|+|+... ..+|..+++|++|+|++|.+.. .-+.++..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP----PDSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC----TTTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC----HHHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence 35666666666666432 1345556777777777777652 1223556677777777777654
|
... |
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00051 Score=74.36 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=69.3
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcC-CcccccccccCCCCCcEEEcCCCCCCccchHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK-GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~-G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La 640 (999)
...|+.|++.+++++.. ..+..+++|++|.+|+|.+... |+..+++ .+++|++|++++|.|++ +..+.
T Consensus 42 ~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred ccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecCCcccc--ccccc
Confidence 45666777777777642 3466788999999999955432 4545544 46999999999999985 22232
Q ss_pred HhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEE
Q psy18075 641 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681 (999)
Q Consensus 641 ~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~Ld 681 (999)
.+....+|..|++.+|..+.-- ..--+.+.-+++|++||
T Consensus 111 -pl~~l~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 -PLKELENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLD 149 (260)
T ss_pred -hhhhhcchhhhhcccCCccccc-cHHHHHHHHhhhhcccc
Confidence 3455688999999999665410 01122333455566554
|
|
| >KOG4242|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00055 Score=78.95 Aligned_cols=255 Identities=16% Similarity=0.112 Sum_probs=154.3
Q ss_pred hhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCC-CccHHHHHHHHhccCCCCccEEEccCCccCchhhhHH
Q psy18075 439 WKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFG-PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLL 517 (999)
Q Consensus 439 ~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~-~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~L 517 (999)
..++.+++.+..+|..+...+. ...++.++.+...+. +.++..+. ...-++|+..+++.|+....-...+
T Consensus 218 eldls~n~~Kddip~~~n~~a~-----~~vl~~ld~s~tgirlD~l~~~l~----~g~~tkl~~~kls~ng~s~skg~Eg 288 (553)
T KOG4242|consen 218 ELDLSTNGGKDDIPRTLNKKAG-----TLVLFKLDRSTTGIRLDLLTSPLA----AGRTTKLTFGKLSRNGTSPSKGEEG 288 (553)
T ss_pred ccccccCCCCccchhHHHHhhh-----hhhhhcccccccccchhhcccccc----cccccccchhhhccCCCCccccccc
Confidence 3455556666666655544332 224566666665552 33322221 1222466666777666554333333
Q ss_pred HHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccc--cccccCCCccCchhhhhhhHHhhhcccCce
Q psy18075 518 SKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL--ERVEMPQNGIYHVGITALSDAFEENKNLRH 595 (999)
Q Consensus 518 a~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sL--e~LdLs~N~It~~g~~~La~aL~~~~~Lr~ 595 (999)
....++. +..-.++ +|++..++...+-...+.-.+..+... -.++++.|......+ +-.. ..-..+++
T Consensus 289 g~~~k~~------fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--leac-i~g~R~q~ 358 (553)
T KOG4242|consen 289 GGAEKDT------FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--LEAC-IFGQRVQV 358 (553)
T ss_pred ccccccc------cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch--hhcc-ccceeeeE
Confidence 3332221 1122456 777777777766655544443333322 256777776654321 1111 11234889
Q ss_pred eeccCCCCCcCCcccccccccCCCCCcEEEcCCCC---CCccchHHHHHhccCC--CCCCEEEccCCCCCCcchhhHHHh
Q psy18075 596 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL---LKSAGASSIAKYLTDN--TTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 596 LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~---L~d~g~~~La~aL~~~--~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
|.+++|.+..+|.... .+...+.++.++++.-. +.+.+........... --+..+.++.|.++. +.......
T Consensus 359 l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~ 435 (553)
T KOG4242|consen 359 LLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINK 435 (553)
T ss_pred eecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHh
Confidence 9999999988776554 56677889999887643 2222322222222222 567889999999885 45566777
Q ss_pred hccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 671 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+...+.+..|+++||..++.|...++.+++.+..++.+..+.|-.
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 888899999999999999999999999999999998887766654
|
|
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0011 Score=69.26 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=61.4
Q ss_pred cCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHh
Q psy18075 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 592 ~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
+...+||++|.+.. ...|++++.|.+|.|+.|+|+.. ...|... ++|..|.|.+|.|..-|- ...
T Consensus 43 ~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d---l~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD---LDP 108 (233)
T ss_pred ccceecccccchhh------cccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh---cch
Confidence 45566677776652 22455566777777777776543 2222222 667777777776654321 224
Q ss_pred hccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 671 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
+..||+|++|.+-+|++.... .+-...+..+++|+.||+..-
T Consensus 109 La~~p~L~~Ltll~Npv~~k~-~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKK-NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhccc-CceeEEEEecCcceEeehhhh
Confidence 456777777777777766531 112234556677777777653
|
|
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00068 Score=66.99 Aligned_cols=110 Identities=20% Similarity=0.314 Sum_probs=70.9
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc-CCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS-KLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~-~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
..+-.++|+.|.|.. +......+.....|+..+|++|.+.+ +++.+. ..+.++.|+|++|.|++ ++.
T Consensus 27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-----vPe 94 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-----VPE 94 (177)
T ss_pred HHhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-----chH
Confidence 345567777777652 11233344556677778888887763 444332 34577888888888764 344
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
-+..++.|+.|++++|.+.. .++.+..+.+|-.|+..+|.+-+
T Consensus 95 E~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HHhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence 45556888888888888774 45555556677778887777654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0042 Score=49.64 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 648 ~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+|++|+|++|+|++ +...+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45666666666654 33335566666666666666654
|
... |
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0055 Score=78.26 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
+.|++|+|++|.=.. .|+..++.+-+|+.|+|+++.|. .|+..|.++..|.+||+..+..-. .++..
T Consensus 571 ~~LrVLDLs~~~~l~----~LP~~I~~Li~LryL~L~~t~I~-----~LP~~l~~Lk~L~~Lnl~~~~~l~----~~~~i 637 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLS----KLPSSIGELVHLRYLDLSDTGIS-----HLPSGLGNLKKLIYLNLEVTGRLE----SIPGI 637 (889)
T ss_pred cceEEEECCCCCccC----cCChHHhhhhhhhcccccCCCcc-----ccchHHHHHHhhheeccccccccc----cccch
Confidence 447777777654211 35666666667777777766665 366666666677777776553221 12233
Q ss_pred ccCCCCCcEEEcCCCC
Q psy18075 615 LSKLPSLAILNLGDCL 630 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~ 630 (999)
+..+++|++|.+..-.
T Consensus 638 ~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccEEEeeccc
Confidence 3345666666665443
|
|
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0026 Score=62.99 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=58.9
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+..|+..+|++|.+.+..-+.-..+ +.++.|+|++|.|++.-.+ ++.+ +.|+.|+++.|
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf------~t~t~lNl~~neisdvPeE-~Aam--------------~aLr~lNl~~N 110 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKF------PTATTLNLANNEISDVPEE-LAAM--------------PALRSLNLRFN 110 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhcc------chhhhhhcchhhhhhchHH-Hhhh--------------HHhhhcccccC
Confidence 4577888888888866554433222 4678888888887644433 3332 55888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhh
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~ 581 (999)
.+. ..++.+..+.+|-.|+..+|.+......
T Consensus 111 ~l~-----~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 111 PLN-----AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccc-----cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 876 3455555567777888888877655443
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.00064 Score=73.94 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=36.7
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCC-ChhcHHHHHHHHhcCCCCCEE
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I-s~eg~~~L~~~L~~l~~L~~L 708 (999)
..|++|++|.|..|.|.+-. . ..-|+++|+|+.|+|..|+- +..|-.+-...+..+++|+.|
T Consensus 60 ~rCtrLkElYLRkN~I~sld--E-L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIESLD--E-LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred HHHHHHHHHHHHhcccccHH--H-HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 34455555555555555421 1 22456677777777777753 334556666777777777777
|
|
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0026 Score=66.65 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=90.5
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhh-cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~-~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
=+.++|.+.++...+ -++. ......+||++|.|... ..|...+.|..|.|++|.|+. +...|
T Consensus 21 e~e~~LR~lkip~ie------nlg~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~-----I~p~L 83 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE------NLGATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITR-----IDPDL 83 (233)
T ss_pred ccccccccccccchh------hccccccccceecccccchhhc------ccCCCccccceEEecCCccee-----eccch
Confidence 455666666654221 1222 34667889999988753 456778899999999999983 44444
Q ss_pred c-CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCC
Q psy18075 616 S-KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 616 ~-~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
. .+++|..|.|.+|.|..-|- ...+..|++|+.|.+-+|++....- +-...+...|+|+.||.++-.-
T Consensus 84 ~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 84 DTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchhcccC-ceeEEEEecCcceEeehhhhhH
Confidence 3 35679999999998864432 2345678999999999999987543 2234567789999999876543
|
|
| >KOG2242|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0032 Score=76.14 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhcCCCCCcC---HHHHHHHhhcCCccccccccchHHHHHHHHHccCcchhhccCCCCcccchhhHHHHHH
Q psy18075 894 GCMTAVRLLSEAKLLPSLT---ESQLLACMKLMDEKKSRAGIQLDTVIRLCKMFDLSKESSTKGRRTPCQQCNMCIILGL 970 (999)
Q Consensus 894 g~~~~l~~~~~~~~fp~~~---~~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rn~~~~lg~ 970 (999)
+|...++... +-|+... ..++..+++.++++ .....+.+...|+++.+........|.++|+.|+|+|+
T Consensus 137 ~~~~~~~~~~--e~f~e~~~i~c~~~~~~~d~~~l~------~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~ 208 (558)
T KOG2242|consen 137 SCNSEVEKYG--EKFPENDVIGCFADFEILDEVELS------YEKNGQDLGESFLLSKEDLGGQALYPHVLRKNCAVEGN 208 (558)
T ss_pred hhhHHHHHHH--hhcccccccchhhcccccccCcch------hhhccchhhhhhcchhhhccCcccCcccccCcceeccc
Confidence 7888888887 4455444 45566666788888 88899999999999999988888999999999999999
Q ss_pred hhhhccCcceeeecchhhHHHHhh
Q psy18075 971 LAEKLAGPSSVAMLTQGTLEYLVA 994 (999)
Q Consensus 971 ~ae~l~gp~s~~~~~~~~l~yl~~ 994 (999)
++||.||+.+|+...+.+..|++.
T Consensus 209 f~~~~ag~~~v~~~~~~i~~~~~~ 232 (558)
T KOG2242|consen 209 FGQKAAGYEPVKEEYTFIQNYPLE 232 (558)
T ss_pred cccccccccccchhhhhhhhcchh
Confidence 999999999999999999999987
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0092 Score=47.71 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=4.8
Q ss_pred cccCceeeccCCC
Q psy18075 590 NKNLRHLNLNDNT 602 (999)
Q Consensus 590 ~~~Lr~LdLS~N~ 602 (999)
+++|+.|++++|.
T Consensus 23 l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 23 LPNLETLNLSNNP 35 (44)
T ss_dssp CTTSSEEEETSSC
T ss_pred CCCCCEEEecCCC
Confidence 3333333333333
|
... |
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0074 Score=77.11 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=85.9
Q ss_pred CCcccEEEecCCC--CCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc
Q psy18075 466 GARLVELDLSDNA--FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 543 (999)
Q Consensus 466 ~~sL~~LdLS~N~--L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls 543 (999)
++.|+.|-+..|. +.......|. ..+.|+.|||++|.=. ..+++.+. ..-+||+|+|+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~------~m~~LrVLDLs~~~~l----~~LP~~I~----------~Li~LryL~L~ 603 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFR------SLPLLRVLDLSGNSSL----SKLPSSIG----------ELVHLRYLDLS 603 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHh------hCcceEEEECCCCCcc----CcCChHHh----------hhhhhhccccc
Confidence 5578888888886 4444433332 2368999999986421 23333333 33559999999
Q ss_pred CCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 544 ~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
+..+. .|+..++.++.|.+|++..+.--.. ++..+..+++||+|.+...... ....+...+..+.+|+.
T Consensus 604 ~t~I~-----~LP~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~--~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 604 DTGIS-----HLPSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALS--NDKLLLKELENLEHLEN 672 (889)
T ss_pred CCCcc-----ccchHHHHHHhhheecccccccccc----ccchhhhcccccEEEeeccccc--cchhhHHhhhcccchhh
Confidence 88877 6889999999999999998764321 2455556889999998765422 11233334455666666
Q ss_pred EEcCC
Q psy18075 624 LNLGD 628 (999)
Q Consensus 624 LdLs~ 628 (999)
|....
T Consensus 673 ls~~~ 677 (889)
T KOG4658|consen 673 LSITI 677 (889)
T ss_pred heeec
Confidence 65543
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0017 Score=70.68 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=63.5
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHh
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~a 642 (999)
.+.+.|++.||+|++.. ...+++.|++|.||-|.|+. |. .+..|+.|++|.|..|.|.+..- | ..
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss-----L~-pl~rCtrLkElYLRkN~I~sldE--L-~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS-----LA-PLQRCTRLKELYLRKNCIESLDE--L-EY 83 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc-----ch-hHHHHHHHHHHHHHhcccccHHH--H-HH
Confidence 45566677777776642 22346667777777777662 22 34556677777777776654321 2 33
Q ss_pred ccCCCCCCEEEccCCCCCC-cchhhHHHhhccCCCcCEEE
Q psy18075 643 LTDNTTLEDVNLTCNEISV-QGGLDLVKAMKNKTKLKQIN 681 (999)
Q Consensus 643 L~~~~~L~~LdLs~N~I~~-~g~~~L~~~L~~~~sL~~Ld 681 (999)
|.+.++|+.|.|..|+-.. .|-.+-...|+.+|+|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5566777777777775443 34445556677778888775
|
|
| >KOG3735|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.011 Score=66.15 Aligned_cols=90 Identities=19% Similarity=0.308 Sum_probs=45.3
Q ss_pred ccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
+.|+.++|.++. |...-+..++.++..+...+...|.+...++.-+..++..+..+++|++|++.+|.|+..|+.++..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 455666665554 4444455555555555555555555555554444444444444444444444444444444444444
Q ss_pred hccCCCCCCEE
Q psy18075 642 YLTDNTTLEDV 652 (999)
Q Consensus 642 aL~~~~~L~~L 652 (999)
+|..+.+|..|
T Consensus 278 al~~n~tl~el 288 (353)
T KOG3735|consen 278 ALQSNKSLTEL 288 (353)
T ss_pred HHhccchhhHh
Confidence 44444444443
|
|
| >KOG3735|consensus | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.013 Score=65.54 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCC-
Q psy18075 551 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC- 629 (999)
Q Consensus 551 g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N- 629 (999)
-++.++.+++.+...+.+.|.+.+..+....+++..+..|+.|++|++.+|.|++.|+..+..++....+|..|.+.+-
T Consensus 215 ~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~al~~n~tl~el~~dnqr 294 (353)
T KOG3735|consen 215 TLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLRALQSNKSLTELKNDNQR 294 (353)
T ss_pred HHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHHHHhccchhhHhhhhhHH
Confidence 3334444444444444444444444444444444444444444444444444444444444444444444444433221
Q ss_pred -CCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 630 -LLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 630 -~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.++..-...++..+..+.+|-.+-+.+
T Consensus 295 q~lg~~vemeia~~leen~sllk~gy~f 322 (353)
T KOG3735|consen 295 QVLGNAVEMEIALELEENASLLKFGYHF 322 (353)
T ss_pred hhcccHHHHHHHHHHHhccccccccccc
Confidence 122233344555555555544444333
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.046 Score=63.83 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=78.4
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+.+++.|++++|.|.... .+ + .+|++|.+++|.-- ..+...+ |.+|+.|.+++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP--~L------P--~sLtsL~Lsnc~nL----tsLP~~L------------P~nLe~L~Ls~ 103 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP--VL------P--NELTEITIENCNNL----TTLPGSI------------PEGLEKLTVCH 103 (426)
T ss_pred HhcCCCEEEeCCCCCcccC--CC------C--CCCcEEEccCCCCc----ccCCchh------------hhhhhheEccC
Confidence 3578999999999876544 11 2 37999999986421 1112111 24588999988
Q ss_pred C-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCC-CCcCCcccccccccCCCCCc
Q psy18075 545 N-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 545 N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~-Lsd~G~~~L~~aL~~l~sL~ 622 (999)
| .+. .+ ..+|+.|+++++.+.. +..|+. +|+.|.+.++. .... .++..| .++|+
T Consensus 104 Cs~L~-----sL------P~sLe~L~L~~n~~~~--L~~LPs------sLk~L~I~~~n~~~~~---~lp~~L--PsSLk 159 (426)
T PRK15386 104 CPEIS-----GL------PESVRSLEIKGSATDS--IKNVPN------GLTSLSINSYNPENQA---RIDNLI--SPSLK 159 (426)
T ss_pred ccccc-----cc------ccccceEEeCCCCCcc--cccCcc------hHhheecccccccccc---cccccc--CCccc
Confidence 7 443 12 3467888887766543 222332 46677774432 2111 111111 24888
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
.|++++|.... ++..+. .+|+.|.++.|
T Consensus 160 ~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 160 TLSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 88888887431 222222 57888888766
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.056 Score=63.14 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCcCEEEccCCCCC
Q psy18075 395 VIVDAINEVKVLVSLNLEGNTLG 417 (999)
Q Consensus 395 ~L~~aL~~~~~L~~LdLs~N~L~ 417 (999)
.+..-+..+.+++.|++++|.|.
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDCDIE 65 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCc
Confidence 33444666788888888887644
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.041 Score=39.62 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=24.5
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHh
Q psy18075 403 VKVLVSLNLEGNTLGVNAAKAIADALS 429 (999)
Q Consensus 403 ~~~L~~LdLs~N~L~~~~~~~L~~~L~ 429 (999)
+++|+.|||++|.|+++++.+|+++|+
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 367999999999999999999998875
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.071 Score=38.43 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=11.6
Q ss_pred CCCEEEccCCCCCCcchhhHHHhh
Q psy18075 648 TLEDVNLTCNEISVQGGLDLVKAM 671 (999)
Q Consensus 648 ~L~~LdLs~N~I~~~g~~~L~~~L 671 (999)
+|+.|||++|.|+++|+..|++++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHHh
Confidence 444555555555554544444443
|
|
| >KOG3864|consensus | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.047 Score=57.51 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=54.8
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.++.+|-++..|...|+.++.. ++.|+.|.+.+| .+.+.+...|+.. .++|+.|++++|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~------l~~i~~l~l~~ck~~dD~~L~~l~~~-------------~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD------LRSIKSLSLANCKYFDDWCLERLGGL-------------APSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc------cchhhhheeccccchhhHHHHHhccc-------------ccchheeeccCCC
Confidence 5778888888888888877744 367888888887 5666666666542 1347777777654
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCC
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQN 573 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N 573 (999)
|++.|+..|. .+++|+.|.|.+-
T Consensus 163 rIT~~GL~~L~----~lknLr~L~l~~l 186 (221)
T KOG3864|consen 163 RITDGGLACLL----KLKNLRRLHLYDL 186 (221)
T ss_pred eechhHHHHHH----HhhhhHHHHhcCc
Confidence 7766665433 3566666665543
|
|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.3 Score=57.07 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhhhhhccCcchhhhHHHHHHhcccccc-cc-cccc---ccCcccHHHHHHHHHhcCCCCCcC-----
Q psy18075 843 SLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCE-DK-SFKI---NYNLNGCMTAVRLLSEAKLLPSLT----- 912 (999)
Q Consensus 843 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~llv~lgllk~e-~k-~~k~---~~~~~g~~~~l~~~~~~~~fp~~~----- 912 (999)
.-+.+.+.|.+-+|+.|..+. ..+..++.-.+..+-.. .+ .+++ .|.--|.|..|+-+. -.||.++
T Consensus 487 ~~~~~ld~L~~~L~~Laq~~p--~~~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~--~lFPTSD~~HpV 562 (840)
T PF04147_consen 487 PPFEVLDSLIPHLYDLAQKYP--EEAAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVG--TLFPTSDFRHPV 562 (840)
T ss_pred cCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHH--HhcCcccccCcc
Confidence 446667888888888876432 23333343343333221 11 1111 255568888888887 7899988
Q ss_pred --HHH--HHHHhhcCCcc
Q psy18075 913 --ESQ--LLACMKLMDEK 926 (999)
Q Consensus 913 --~~~--l~~fl~~~~~~ 926 (999)
+++ +.-+|++|+..
T Consensus 563 VTPalllm~~~L~q~~v~ 580 (840)
T PF04147_consen 563 VTPALLLMSEYLSQCRVR 580 (840)
T ss_pred hhHHHHHHHHHHhcCCCC
Confidence 222 34567777666
|
|
| >PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.046 Score=50.31 Aligned_cols=14 Identities=7% Similarity=0.123 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHhh
Q psy18075 815 RYLESMLLAIMKVS 828 (999)
Q Consensus 815 ~~~~~~~~~~~k~~ 828 (999)
+++.++.-.++-|-
T Consensus 71 shi~h~e~~~vhv~ 84 (101)
T PF09026_consen 71 SHILHLEHDLVHVT 84 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhccccceEEee
Confidence 34444444443333
|
CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A. |
| >KOG3864|consensus | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.067 Score=56.42 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=47.6
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC-CCchhHHHHHHHHhhcccccccccCCCc-c
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNG-I 575 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~-I 575 (999)
.++.++-+++.|...|+..+-.. ..++.|.+.++. +.|.++..+.. -.++|+.|+|++|. |
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l--------------~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL--------------RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRI 164 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc--------------chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCee
Confidence 46666777776666665555332 346666666655 55555555444 24567777777664 6
Q ss_pred CchhhhhhhHHhhhcccCceeeccC
Q psy18075 576 YHVGITALSDAFEENKNLRHLNLND 600 (999)
Q Consensus 576 t~~g~~~La~aL~~~~~Lr~LdLS~ 600 (999)
|+.|+.-|. ++++|+.|.|.+
T Consensus 165 T~~GL~~L~----~lknLr~L~l~~ 185 (221)
T KOG3864|consen 165 TDGGLACLL----KLKNLRRLHLYD 185 (221)
T ss_pred chhHHHHHH----HhhhhHHHHhcC
Confidence 666654333 356666666554
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.13 Score=35.48 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.9
Q ss_pred CCCcCEEEccCCCCChhHHHHHHH
Q psy18075 403 VKVLVSLNLEGNTLGVNAAKAIAD 426 (999)
Q Consensus 403 ~~~L~~LdLs~N~L~~~~~~~L~~ 426 (999)
|++|++|+|++|.|+++++.+|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 578999999999999999998873
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.13 Score=35.43 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=9.8
Q ss_pred CCccEEEccCCccCchhhhHHH
Q psy18075 497 FALEELKLNNNGLGITGCKLLS 518 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La 518 (999)
++|++|+|++|+|++.|+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 3455555555555555544443
|
... |
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.18 Score=54.35 Aligned_cols=11 Identities=0% Similarity=0.072 Sum_probs=4.6
Q ss_pred HHHHHHhhChh
Q psy18075 423 AIADALSKHEH 433 (999)
Q Consensus 423 ~L~~~L~~~~~ 433 (999)
.|+.+++++|.
T Consensus 55 YFC~s~qrlp~ 65 (314)
T PF06524_consen 55 YFCQSVQRLPM 65 (314)
T ss_pred ehhhhhhcCch
Confidence 34444444443
|
The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus |
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.27 Score=62.78 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=12.7
Q ss_pred CCCChhcHHHHHHHHhc
Q psy18075 685 NQFGEEGVEEMEKLMKS 701 (999)
Q Consensus 685 N~Is~eg~~~L~~~L~~ 701 (999)
..++..|+..|...+..
T Consensus 618 ~~~t~~~l~~ll~vl~~ 634 (784)
T PF04931_consen 618 PHLTESGLQLLLDVLDA 634 (784)
T ss_pred hhcCHHHHHHHHHHhcc
Confidence 35778888888888763
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.53 Score=58.29 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=13.0
Q ss_pred cccchhHhhcCCcHHHHhhcCCc
Q psy18075 74 KQHSVTDFLAAPSVSLFNSLGPN 96 (999)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ 96 (999)
++-+.+.|+..--.+.|.+-||.
T Consensus 270 ~~gd~~~~~~~~~~~~f~ss~~~ 292 (1516)
T KOG1832|consen 270 AAGDAAAELVTAALEEFKSSGSE 292 (1516)
T ss_pred hcccHHHHHHHHHHhhccCCCcc
Confidence 45566666665555555555554
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.61 Score=57.79 Aligned_cols=7 Identities=14% Similarity=-0.054 Sum_probs=3.3
Q ss_pred HhhcCCc
Q psy18075 90 FNSLGPN 96 (999)
Q Consensus 90 ~~~~~~~ 96 (999)
..-+|-+
T Consensus 1474 eleeGed 1480 (1516)
T KOG1832|consen 1474 ELEEGED 1480 (1516)
T ss_pred HHhhcCC
Confidence 4445543
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.81 Score=32.19 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=14.4
Q ss_pred CCCccEEEccCC-ccCchhhhHHH
Q psy18075 496 CFALEELKLNNN-GLGITGCKLLS 518 (999)
Q Consensus 496 c~~L~~L~Ls~n-~Lt~~g~~~La 518 (999)
|++|++|+|++| +|++.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666 46666665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 999 | ||||
| 1k5d_C | 386 | Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl | 5e-30 | ||
| 1yrg_A | 385 | The Crystal Structure Of Rna1p: A New Fold For A Gt | 5e-30 |
| >pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 386 | Back alignment and structure |
|
| >pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase- Activating Protein Length = 385 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 3e-87
Identities = 128/366 (34%), Positives = 191/366 (52%), Gaps = 12/366 (3%)
Query: 376 TKLSFAGQGLKLDN--KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEH 433
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 434 FKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRS 493
+ A + D+FTGR+K EIP+ALR L L + +L + LSDNAFGP E L D L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 494 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAK 553
LE L L+NNGLG +++AL + + K + +P L+ I GRNRLEN K
Sbjct: 121 HTP--LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMK 177
Query: 554 MLAAVFKKLKTLERVEMPQNGIYHVGIT-ALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612
A F+ + L V+M QNGI GI L + + L+ L+L DNT T+ G+ L
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKA 670
AL P+L L L DCLL + GA+++ + N L+ + L NEI + L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
Query: 671 MKNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 727
+ K L + ++ N+F EE V+E+ ++ + G L+D E +EE+DEE E
Sbjct: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEE 357
Query: 728 EENDSD 733
E+ S
Sbjct: 358 AESQSP 363
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 7e-43
Identities = 55/378 (14%), Positives = 115/378 (30%), Gaps = 29/378 (7%)
Query: 385 LKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFT 444
KL + + + + + SL+L N L + + A + +L
Sbjct: 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--- 59
Query: 445 GRMKTEI-PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503
+ L L A + L+LS N + L L + + L
Sbjct: 60 ---GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLD 115
Query: 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL- 562
L N +A + P ++ N L + + L + +
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNL---------PASITSLNLRGNDLGIKSSDELIQILAAIP 166
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 620
+ + + N + L+ ++ L+L+ N + K L S +P
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 621 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKL 677
+ LNL L ++ L+ V L + +S + L A N K+
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 678 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD-EESEEENDSDAEG 736
++ + + + L++ + +C Q + + E+ + E
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSG--KADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344
Query: 737 DNSNLSHN---DSNHSHN 751
S + + +H H+
Sbjct: 345 RESIQTCKPLLEHHHHHH 362
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 563
+N G + + P + N L + L F
Sbjct: 1 MNYKLTLHPGSNPVEEFTS----------IPHGVTSLDLSLNNLYSISTVELIQAFANTP 50
Query: 564 -TLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 620
++ + + N + L N+ LNL+ N ++YK + L + L+ +P +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 621 LAILNLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLK 678
+ +L+LG S +S + ++ +NL N++ ++ +L++ + +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 679 QINVSENQFGEEGVEEMEKLMKS 701
+N+ N + E+ K + S
Sbjct: 171 SLNLRGNNLASKNCAELAKFLAS 193
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 8e-42
Identities = 67/315 (21%), Positives = 119/315 (37%), Gaps = 22/315 (6%)
Query: 391 EDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTE 450
+ + + L + N + + + L AL +
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE------SCG 210
Query: 451 I-PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 509
+ D R L + A L EL L N G +G+ L L L L + G+
Sbjct: 211 VTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGI 268
Query: 510 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERV 568
GC L + L +LK N L +EGA++L + LE +
Sbjct: 269 TAKGCGDLCRVLRAKE----------SLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLG 627
+ + S +N+ L L +++N + G L Q L + L +L L
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQ 686
DC + + SS+A L N +L +++L+ N + G L LV++++ L+Q+ + +
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Query: 687 FGEEGVEEMEKLMKS 701
+ EE + ++ L K
Sbjct: 439 WSEEMEDRLQALEKD 453
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 2e-38
Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 21/299 (7%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQ 464
+ L+L+ L ++ L + L ++ L+ L GL
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-------DAGLQLLCEGLLD 139
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
RL +L L + E LA +LR+ +EL ++NN + G ++L + L D
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKD- 196
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
SP L+ + ++ + L + +L + + N + VG+ L
Sbjct: 197 --------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248
Query: 585 DAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ LR L + + IT KG L + L SL L+L L GA + + L
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308
Query: 644 TD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+ LE + + + + L ++ +S N+ + GV E+ + +
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 4e-38
Identities = 56/290 (19%), Positives = 101/290 (34%), Gaps = 21/290 (7%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQ 464
L L LE +L + + +A L FK + + +R L GL+
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN-------EAGVRVLCQGLKD 196
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
+ +L L L L ++ S L EL L +N LG G L L
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKAS--LRELALGSNKLGDVGMAELCPGLLHP 254
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
L+ + +G L V + ++L+ + + N + G L
Sbjct: 255 SSR---------LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 585 DAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ E L L + + T L++ L L + + L+ AG + + L
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365
Query: 644 TD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692
+ L + L ++S L + L+++++S N G+ G+
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-36
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 21/308 (6%)
Query: 388 DNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGR 446
+ + + ++ + L+ L K I+ AL + L +
Sbjct: 12 CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-- 69
Query: 447 MKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 506
+ + GLQ ++ +L L + G L+ LR+ L+EL L++
Sbjct: 70 -----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT--LQELHLSD 122
Query: 507 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 566
N LG G +LL + L D L+ L + LA+V + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 567 RVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ + N I G+ L +++ L L L +T L ++ SL L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 626 LGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684
LG L G + + L ++ L + + I+ +G DL + ++ K LK+++++
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293
Query: 685 NQFGEEGV 692
N+ G+EG
Sbjct: 294 NELGDEGA 301
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 23/280 (8%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDA-LRYLGNGLQ 463
L +L LE + + + + ++ + AL ++ D + L GL
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGS--------NKLGDVGMAELCPGLL 252
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523
+RL L + + G L +LR+ L+EL L N LG G +LL + L +
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCETLLE 310
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
L+ ++V + + L +++ N + G+ L
Sbjct: 311 PG---------CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 584 SDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
+ LR L L D ++ L L SL L+L + L AG + +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421
Query: 643 LTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
+ LE + L S + L K+K L+ I+
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-31
Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 17/244 (6%)
Query: 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT 512
L LQQ + L D + ++ LR + L EL L +N LG
Sbjct: 18 ARWAELLPLLQQ----CQVVRLDDCGLTEARCKDISSALRVNPA--LAELNLRSNELGDV 71
Query: 513 GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572
G + + L ++ L G +L++ + L TL+ + +
Sbjct: 72 GVHCVLQGLQTP---------SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 573 NGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631
N + G+ L + + L L L +++ PL L P L + + +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 632 KSAGASSIAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690
AG + + L D+ LE + L ++ DL + +K L+++ + N+ G+
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 691 GVEE 694
G+ E
Sbjct: 243 GMAE 246
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-30
Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 18/228 (7%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ LD+ L LL+ + ++L++ GL CK +S AL
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQ-----CQVVRLDDCGLTEARCKDISSALRVN---- 55
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAF 587
AL N L + G + + ++++ + + G LS
Sbjct: 56 ------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
L+ L+L+DN + G L + L L L L C L +A +A L
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169
Query: 647 TTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 693
+++ ++ N+I+ G L + +K + +L+ + + +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 7e-20
Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 5/159 (3%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
L + L + ++ + + + G+ +S A N L LNL N +
Sbjct: 13 EELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69
Query: 605 YKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663
G + Q L + L+L +C L AG ++ L TL++++L+ N + G
Sbjct: 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129
Query: 664 GLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L + + + +L+++ + E + ++++
Sbjct: 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
++ +++ + L + + + L+D +T + AL P+LA
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 623 ILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 681
LNL L G + + L + ++ ++L ++ G L ++ L++++
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 682 VSENQFGEEGVEEMEKLMKS 701
+S+N G+ G++ + + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLD 139
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ +++ L++ ++ L L + + L DC L A I+ L N L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPAL 58
Query: 650 EDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 701
++NL NE+ G +++ ++ K++++++ G + +++
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 9e-35
Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 18/237 (7%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L +L+L+ P+ +A +L S AL+E+ L + L G + L +
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARK-- 130
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAF 587
L L N L E K L + + + + + N + G+ L +
Sbjct: 131 ------LGL-----QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
N ++ HL+L + +G L L + L LN+ A ++A+ ++
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239
Query: 648 TLEDVNLTCNEISVQGGL---DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+LE ++L NE+S +G DL A + ++ E + ++ ++
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRN 296
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 5e-34
Identities = 52/302 (17%), Positives = 100/302 (33%), Gaps = 36/302 (11%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALW-KDMFTGRMKTEIPDALRYLGNGLQQ 464
L LNL G + +A L H + P LR L
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD------PAGLRTLLPVFL- 126
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
R +L L N+ GP + L DLL C + L+L+NN L G +L + L
Sbjct: 127 ---RARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGN 182
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
++ L +EG ++LAA + + L+ + + NG AL+
Sbjct: 183 T----------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS---LAILNLGDCLLKSAGASSIAK 641
A E+ +L L+L N ++ +G L + + + + +++
Sbjct: 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292
Query: 642 YLTDNTTLEDVN-----------LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690
+ + + L + + + ++ + +++ + G
Sbjct: 293 VQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352
Query: 691 GV 692
Sbjct: 353 SG 354
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 5e-30
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 13/205 (6%)
Query: 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 557
+L +L L + C +++ L + L +L+ G + L
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHA---------LDEVNLASCQLDPAGLRTLLP 123
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALS 616
VF + + L + N + L D ++ + L L++N +T G L + L+
Sbjct: 124 VFLRARKLG---LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180
Query: 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 676
S+ L+L L G +A L N L+++N+ N L L +A +
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240
Query: 677 LKQINVSENQFGEEGVEEMEKLMKS 701
L+ +++ N+ EG + + L +
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGA 265
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 50/275 (18%), Positives = 77/275 (28%), Gaps = 60/275 (21%)
Query: 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYL---G 459
L L+ N+LG A K + D L H+ + + L
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLL-LHDQCQ-------------------ITTLRLSN 164
Query: 460 NGLQQAGAR-----------LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
N L AG + L L G G+E LA L + L+EL + NG
Sbjct: 165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ--LQELNVAYNG 222
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
G T L++A + +L++ N L +EG ++L + + RV
Sbjct: 223 AGDTAALALARAAREHP----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272
Query: 569 E---MPQNGIYHVGITALSDAFEENK-----------NLRHLNLNDNTITYKGAIPLGQA 614
+ LS+ L +L D+ Q
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
L + L S S
Sbjct: 333 LRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGH 367
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 27/207 (13%), Positives = 59/207 (28%), Gaps = 11/207 (5%)
Query: 393 AKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEI 451
V+++ + + L+L LG + +A L ++ + + +
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG------- 224
Query: 452 PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLG 510
A L ++ L L L N G + L DL ++ A + +
Sbjct: 225 DTAALALARAAREH-PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283
Query: 511 ITGCKLLSKALHDCYESSKKEG-SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569
+LS+ + + L L + +R A + + + +
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALL 343
Query: 570 MPQNGIYHVGITALSDAFEENKNLRHL 596
+ FE+ H
Sbjct: 344 EQLGSSGSPSGSWSHPQFEKGAGHHHH 370
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 9e-15
Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 5/136 (3%)
Query: 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKL 618
+ L +L ++ + + V T ++ + L +NL + G L +
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
L L L + L + + + L+ N ++ G L++ + T +
Sbjct: 129 RK---LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185
Query: 678 KQINVSENQFGEEGVE 693
+++ G+EG+E
Sbjct: 186 THLSLLHTGLGDEGLE 201
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAG 635
H + E +LR LNL +T + L +L +NL C L AG
Sbjct: 58 HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117
Query: 636 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 693
++ L L N + + DL + ++ ++ + +S N GV
Sbjct: 118 LRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-21
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 548 ENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 606
+ + L + LE V + I + A ++A + N ++ ++
Sbjct: 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 607 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGG 664
A L + L +L LN+ + +G ++ + L NT+L ++ + +
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 665 LDLVKAMKNKTKLKQINVSENQFGEEGV 692
+++ ++ T L + Q G
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQGPRLR 168
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-21
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 3/143 (2%)
Query: 539 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 598
V + + K A K +++ + AL++ + N L+ LN+
Sbjct: 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100
Query: 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTC 656
N I+ G + L +AL SL L + + L + IA L NTTL
Sbjct: 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160
Query: 657 NEISVQGGLDLVKAMKNKTKLKQ 679
+ + M N +++
Sbjct: 161 TQQGPRLRASNA-MMNNNDLVRK 182
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 3e-19
Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 460 NGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS 518
N + + D N+ E L + + LEE+ LNN + + K +
Sbjct: 3 NSVIKPTKYKPVPDEEPNS--TDVEETLKRIQNNDP--DLEEVNLNNIMNIPVPTLKACA 58
Query: 519 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
+AL +++ +K F R + A LA + K TL+ + + N I
Sbjct: 59 EAL----KTNTY------VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108
Query: 579 GITALSDAFEENKNLRHLNL--NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
GI AL +A + N +L L + + + + L K +L
Sbjct: 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ--GPR 166
Query: 637 SSIAKYLTDNTTL 649
+ + +N L
Sbjct: 167 LRASNAMMNNNDL 179
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 9e-11
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 611 LGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669
L + + P L +NL + + + A+ L NT ++ ++ + L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 670 AMKNKTKLKQINVSENQFGEEGVEEM 695
+K LK +NV N G+ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILAL 113
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 39/284 (13%), Positives = 71/284 (25%), Gaps = 107/284 (37%)
Query: 318 GWIKVINSMVSVIPIDNPLGPAVIELNHKGRMTDKPNDDVSDILKKLESISVESGQDSTK 377
G VI D DV + LK++++ +
Sbjct: 1 GLNSVIKPTKYKPVPDEEPNS----------------TDVEETLKRIQN-------NDPD 37
Query: 378 LSFAGQGLKLDN-----KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHE 432
L + + L+N K +A+ + ++ G A A+A+ L +
Sbjct: 38 L----EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN- 92
Query: 433 HFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLR 492
L L++ N G+ L + L+
Sbjct: 93 ----------------------------------NTLKSLNVESNFISGSGILALVEALQ 118
Query: 493 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGA 552
S+ L EL+++N L N
Sbjct: 119 SNTS--LIELRIDNQ------------------------------------SQPLGNNVE 140
Query: 553 KMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 596
+A + +K TL + S+A N +L
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQG--PRLRASNAMMNNNDLVRK 182
|
| >2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B Length = 170 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 2e-19
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 765 NTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAI 824
+T + +S V+ FLA PS LGP + L + ++ ++ + A
Sbjct: 1 STGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AF 56
Query: 825 MKVSSLVPSTTTLQSPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDK 884
+KVSS+ + ++ + L ++ FN + S +T LLVH+GL+K EDK
Sbjct: 57 LKVSSVF---KDEATVRMAVQDAVDALMQKAFNSS--SFNSNTFLTRLLVHMGLLKSEDK 111
Query: 885 SFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 918
K NL G + A+ + + P LLA
Sbjct: 112 -VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144
|
| >2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B Length = 170 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-11
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 174 ESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLI 233
E ++ A +KVSS+ T+ ++ + L ++ FN +S +T LLVH+GL+
Sbjct: 50 EKVVSAFLKVSSVFKDEATV-RMAVQDAVDALMQKAFNSSS--FNSNTFLTRLLVHMGLL 106
Query: 234 KCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 272
K EDK K NL G + A+ + + P LLA
Sbjct: 107 KSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144
|
| >2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B Length = 170 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 62 NTSNQSHSVSQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAI 121
+T + +S V+ FLA PS LGP + L + ++ ++ + A
Sbjct: 1 STGEPAPVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AF 56
Query: 122 MKVSSLVPSTTTLQSLTVLSCS--LMKSTVSLKTENLVFVLT 161
+KVSS+ T++ V LM+ + + N LT
Sbjct: 57 LKVSSVFKDEATVRMA-VQDAVDALMQKAFNSSSFNSNTFLT 97
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
R+ E + L K +E+ + I L + E + +LR LN+ N +T
Sbjct: 52 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
Query: 605 YKGAIPLGQALSK---LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661
+ L ++ + N +L + + + +N +L V ++ +
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171
Query: 662 QGGLDLVKAMKNKTKLKQINVSENQ 686
+ + +N +++ + ++
Sbjct: 172 RHRVSE-ALERNYERVRLRRLGKDP 195
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 6e-15
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 552 AKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 610
+ + + L+ V + + I +L +A +K++ +L + I+ A
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89
Query: 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDL 667
L + + PSL +LN+ L + + + ++ + N + + Q +D+
Sbjct: 90 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
Query: 668 VKAMKNKTKLKQINVSENQFG 688
+ A++ L ++ +S
Sbjct: 150 MMAIEENESLLRVGISFASME 170
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 8e-15
Identities = 16/123 (13%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 582 ALSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
++ E++ +L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 641 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 697
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 698 LMK 700
++
Sbjct: 152 AIE 154
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 611 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ + L++ A GL +L+ +S L L + +N L L ++
Sbjct: 72 IEKFSLANTAISDSEARGLIELIETSPS--LRVLNVESNFLTPELLARLLRST------- 122
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
S + K ++ L N+ + ++ ++L RV + + +S+A E
Sbjct: 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME--ARHRVSEALE 180
Query: 589 ENKNLRHL 596
N L
Sbjct: 181 RNYERVRL 188
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 47/176 (26%)
Query: 351 DKPND-DVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSL 409
+ ND DV + +L D+ +K +KE + +++A K +
Sbjct: 22 EPDNDTDVESCINRLRE------DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF 75
Query: 410 NLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARL 469
+L + + A+ + + + L
Sbjct: 76 SLANTAISDSEARGLIELIETSPS-----------------------------------L 100
Query: 470 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG---LGITGCKLLSKALH 522
L++ N P + L + ++ E K +N LG + A+
Sbjct: 101 RVLNVESNFLTPELLARLLRSTLVTQ--SIVEFKADNQRQSVLGNQVEMDMMMAIE 154
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 8e-14
Identities = 92/719 (12%), Positives = 193/719 (26%), Gaps = 225/719 (31%)
Query: 54 HNNSNQSHNTSNQSHSVSQLKQHSVTDF-------------------------LAAPSVS 88
H++ + T + + F + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 89 -----LFNSL---GPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVL 140
LF +L Q F++E+ Y L++ +K PS T +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVL---RINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 141 SCSLMKSTVSLKTENLVFVLTKNHCAYHVDRYLESMLLAIMK-VSSLVPST--------- 190
+ N V K Y+V R L + + + L P+
Sbjct: 117 D----------RLYNDNQVFAK----YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 191 ---TTLPSSSL--FECTKVLYRELFNWAS----NSDK-LSTVTNALLVHLGLIKCE--DK 238
T + ++ + ++F W + NS + + + LL + D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 239 SFKINYNLNGCMTAVRLLSEAKLLPSLTESQLL--------ACMKLMDEK-KTLVI--KV 287
S I ++ +R L ++K LL + K L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYE---NC-LLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 288 PISGFLNGEVETFVPPEVLLKLHTIADQEEGWIKVINSMVSVIPID----NPLGPAVI-E 342
++ FL+ T + + T + + +K ++ +P + NP ++I E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 343 LNHKGRMTDKPNDDV-SDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVD-AI 400
G T V D L + S+ L+ E K+ ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV---------------LEPAEYRKMFDRLSV 380
Query: 401 NEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGN 460
+ L + +W D+ +K+++ + N
Sbjct: 381 FPPSAHIPT----ILLSL-------------------IWFDV----IKSDVMVVV----N 409
Query: 461 GLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK- 519
L + LVE ++ + + E L+ ++
Sbjct: 410 KLHKYS--LVEKQPKESTI------SIPSIYLELKVKLENEYALHR--------SIVDHY 453
Query: 520 ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 579
+ ++S P L + + + G +H+
Sbjct: 454 NIPKTFDSDDL--IPPYLDQYF-----------------YSHI-----------G-HHLK 482
Query: 580 ITALSDAFEENKNLRHLNLN--DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
+ + + L+ + I + + S L +L L
Sbjct: 483 NIEHPERMTLFRMV-FLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKF----------- 529
Query: 638 SIAKYLTDN--------TTLEDVNLTCNEISVQG-GLDLVK-AMKNKTK------LKQI 680
Y+ DN + D E + DL++ A+ + + KQ+
Sbjct: 530 -YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 68.8 bits (167), Expect = 2e-12
Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
L+ L++ + GL + + + + E L +++ + + + +
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEK---------LVLYVGVEDYGFDGDMNVFRPL 245
Query: 559 FK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F + L+ + + +V + ++ + L ++++ +T +GA L +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 653
K+ L +N+ L + K L + D
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 68.1 bits (165), Expect = 4e-12
Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 23/236 (9%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
++D + I L+ +L + LNN + T + K
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAM-------PLLNNLKIKGTNNLSIGKKPRPN---- 194
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
LK L + + + + L+ L ++ + + F
Sbjct: 195 --------LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246
Query: 588 EENK--NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
+++ NL+ L + D ++ LP L +++ +L GA + ++
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDK 305
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L+ +N+ N +S + +L K++ K + ++ + + E+E
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMITELEHHHHH 361
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 9e-07
Identities = 34/299 (11%), Positives = 88/299 (29%), Gaps = 17/299 (5%)
Query: 410 NLEGNTLGVNAAKAIADALSKHEHFKR-ALWKDMFTGRMKTEIPDALRYLGNGLQQAGAR 468
++ G + VN K D ++ ++F + + + + +
Sbjct: 19 DVRGTDVIVNYGKLGTDGQTQVKNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKV 78
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ GV + +L+ +L+++ + G C ++ + + E
Sbjct: 79 EAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKF 138
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L + L+ V + L +++ LS +
Sbjct: 139 AHF-EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT-------NNLSIGKK 190
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL---GDCLLKSAGASSIAKYLTD 645
NL+ L + + + S LP+L L L + + +
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 646 NT--TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702
+ L+ + + E +++ L+ +++S +EG + +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMDISAGVLTDEGARLLLDHVDKI 306
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 3e-06
Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 25/233 (10%)
Query: 312 IADQEEGWIKVINSMVSVIPIDNPLGPAVIELNHKGRMTDKPNDDVSDILKKLESISVES 371
+ D++ +K I ++ A + +K + DI + + IS
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE 160
Query: 372 GQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKH 431
D + + A L + + L SL + L + + I + +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220
Query: 432 -EHFKRALWKDMFTGRMKTEIPDA---------LRYLG---NGLQQAGA----------R 468
E + + + + L++LG Q +
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 521
L +D+S G L D + L+ + + N L K L K+L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIK--HLKFINMKYNYLSDEMKKELQKSL 331
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 28/246 (11%), Positives = 72/246 (29%), Gaps = 38/246 (15%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
EIP+ Q + L S N + + ++ + + + + + N
Sbjct: 608 EEIPEDF---CAFTDQ----VEGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+G + S + + N ++ K +F + +
Sbjct: 656 IG---------SEGRNISCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTI 702
Query: 569 EMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ N I + ++ L ++L N +T + + LP L+ ++
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMD 759
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVS 683
+ SS +++ L+ + + + + L Q+ +
Sbjct: 760 VSYNCF-----SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 684 ENQFGE 689
N +
Sbjct: 815 SNDIRK 820
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 37/249 (14%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALH 522
R+ L L+ + + L L+ L + +L
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTE------LKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 523 DCYESSKKEGSPLALKVFIAGR--NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
+ + + L + L++ + K + ++ Q G I
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 581 TALSDAFEENKNLRHLNLNDNTITY---------------KGAIPLGQALSKLPSLAILN 625
T +S A + L+ + ++ TY K + S L L +
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-----VQGGLDLVKAMKNKTKLKQI 680
L +C + + +L D L+ +N+ CN L K++
Sbjct: 498 LYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 681 NVSENQFGE 689
+ N E
Sbjct: 554 YMGYNNLEE 562
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 35/224 (15%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
+L +L L N I E +E L ++N L K + + + +
Sbjct: 596 KLTDLKLDYNQIEEIP-EDFCAFTDQ-----VEGLGFSHNKL---------KYIPNIFNA 640
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAV-FKKLKTLERVEMPQNGIYHVGITALSDA 586
S + N++ +EG + ++ K V + N I ++
Sbjct: 641 ----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF----PTEL 692
Query: 587 FEENKNLRHLNLNDNTITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
F + + L++N +T P L ++L L S A L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752
Query: 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L +++++ N S N ++LK + +
Sbjct: 753 PY---LSNMDVSYNCFS-----SFPTQPLNSSQLKAFGIRHQRD 788
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 42/221 (19%), Positives = 73/221 (33%), Gaps = 30/221 (13%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L +++L + + L DL L+ L + N K L D ++
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPE------LQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
K +++F G N LE A +A +K+ L ++ N + H+ +AF
Sbjct: 547 GPK------IQIFYMGYNNLEEFPA---SASLQKMVKLGLLDCVHNKVRHL------EAF 591
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
N L L L+ N I IP + + L LK
Sbjct: 592 GTNVKLTDLKLDYNQIE---EIP-EDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVY 644
Query: 648 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ V+ + N+I S + + +S N+
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
LDL N + + A LEEL+LN N + + A ++ +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPH------LEELELNENIVS----AVEPGAFNNLF- 80
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
L+ NRL+ + VF L L ++++ +N I + L
Sbjct: 81 ---------NLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVIL----LDYM 123
Query: 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 646
F++ NL+ L + DN + Y I A S L SL L L C L S + L+
Sbjct: 124 FQDLYNLKSLEVGDNDLVY---ISHR-AFSGLNSLEQLTLEKCNLTSIPTEA----LSHL 175
Query: 647 TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQF 687
L + L I+ ++ + K +LK + +S +
Sbjct: 176 HGLIVLRLRHLNINAIRDY-----SFKRLYRLKVLEISHWPY 212
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 37/216 (17%), Positives = 58/216 (26%), Gaps = 54/216 (25%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
L Y+ + L +L L I E L+ L L L+L + +
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG------LIVLRLRHLNINAIRD 193
Query: 515 KLLS-----KALHDCYESSKKEGSP-----LALKVFIAGRNRLEN--EGAKMLAAVFKKL 562
K L + +P L L L A + L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA------VRHL 247
Query: 563 KTLERVEMPQNGIYHVG-------------------ITALS-DAFEENKNLRHLNLNDNT 602
L + + N I + + + AF LR LN++ N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 603 ITYKGAIPLGQALSKLPSLAILNLG------DCLLK 632
+T + + +L L L DC L
Sbjct: 308 LT---TLEES-VFHSVGNLETLILDSNPLACDCRLL 339
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 51/320 (15%), Positives = 107/320 (33%), Gaps = 61/320 (19%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALS-KHEHFKRAL-WKDMFTGRMKTEIPDALRYLGNGLQ 463
L LE N + + ++ + ++ + KR+ + + + + ++L
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--- 330
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523
L L++ DN I L+ L+ L L+N+ + ++
Sbjct: 331 -----LEHLNMEDNDIPGIKSNMFTGLIN------LKYLSLSNSFTSLRTLT--NETFVS 377
Query: 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV----- 578
S L + +N++ + + F L LE +++ N I
Sbjct: 378 LAHSP--------LHILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 579 --GITAL--------------SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
G+ + ++F +L+ L L + + P L +L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLT 483
Query: 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV----QGGLDLVKAMKNKTKLK 678
IL+L + + + L LE ++L N ++ + +K + L
Sbjct: 484 ILDLSNNNIA----NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 679 QINVSENQFGEEGVEEMEKL 698
+N+ N F E VE + L
Sbjct: 540 ILNLESNGFDEIPVEVFKDL 559
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ L+L+ N + + L L + N + KL +
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQ------LTSLDVGFNTIS----KLEPELCQKLPM-- 74
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
LKV N L + F L + + N I + ++ F
Sbjct: 75 --------LKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKI----KNNPFV 118
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ KNL L+L+ N ++ LG +L +L L L + +++ + + + N++
Sbjct: 119 KQKNLITLDLSHNGLSS---TKLG-TQVQLENLQELLLSNNKIQALKSEELD--IFANSS 172
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694
L+ + L+ N+I +L + ++ Q G E+
Sbjct: 173 LKKLELSSNQIKEFSPGCF----HAIGRLFGLFLNNVQLGPSLTEK 214
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 36/225 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS N +G + A L + LE L N + L S +LH +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQ------LEYFFLEYNNIQ----HLFSHSLHGLFN- 297
Query: 528 SKKEGSPLALKVFIAGRNRLE-----NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 582
++ R+ + K+ F+ LK LE + M N I +
Sbjct: 298 ---------VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK--- 345
Query: 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 642
S+ F NL++L+L+++ + + L ILNL + + + +
Sbjct: 346 -SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404
Query: 643 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
LE ++L NEI + + + +I +S N++
Sbjct: 405 ----GHLEVLDLGLNEIG---QELTGQEWRGLENIFEIYLSYNKY 442
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 46/256 (17%), Positives = 81/256 (31%), Gaps = 47/256 (18%)
Query: 451 IPDALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGL 509
DA +LG+ L LDL N + + L + E+ L+ N
Sbjct: 397 ESDAFSWLGH--------LEVLDLGLNEIGQELTGQEWRGLEN------IFEIYLSYNKY 442
Query: 510 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569
L + L+ + R L+N + + F+ L+ L ++
Sbjct: 443 LQ----LTRNSFALVPS----------LQRLMLRRVALKNVDS--SPSPFQPLRNLTILD 486
Query: 570 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY----KGAIPLGQALSKLPSLAILN 625
+ N I ++ D E + L L+L N + L L L ILN
Sbjct: 487 LSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 685
L D L+ ++L N ++ L N+ LK +N+ +N
Sbjct: 543 LESNGFDEIPVEVF----KDLFELKIIDLGLNNLN---TLP-ASVFNNQVSLKSLNLQKN 594
Query: 686 QFGEEGVEEMEKLMKS 701
+ ++
Sbjct: 595 LITSVEKKVFGPAFRN 610
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L A V+ + L L L+NN + + L
Sbjct: 455 SLQRLMLRRVALK--NVDSSPSPFQP--LRNLTILDLSNNNIA----NINDDMLEGLE-- 504
Query: 528 SKKEGSPLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
L++ N L ++ K L L + + NG +
Sbjct: 505 --------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP---- 552
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
+ F++ L+ ++L N + +P + SL LNL L+ S
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNT---LP-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 644 TDNTTLEDVNLTCNEIS 660
L ++++ N
Sbjct: 609 ---RNLTELDMRFNPFD 622
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 41/239 (17%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+E+P L L L +L LS N F + ++ L L + N
Sbjct: 291 SELPSGLVGLST--------LKKLVLSANKFENLCQISASNFPS------LTHLSIKGNT 336
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+ L + L + L+ + +E + L L+ +
Sbjct: 337 KRLE---LGTGCLENLE----------NLRELDLSHDDIETSDCC--NLQLRNLSHLQSL 381
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ N + ++AF+E L L+L + L L +LNL
Sbjct: 382 NLSYNEPLSLK----TEAFKECPQLELLDLAFTRLK---VKDAQSPFQNLHLLKVLNLSH 434
Query: 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
LL S + L+ +NL N +G + +++ +L+ + +S
Sbjct: 435 SLLD----ISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRLEILVLSFCDL 488
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 34/223 (15%)
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 524
A L+ + +GL + S L + +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDMDDE----DISPAVFEGL 251
Query: 525 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
E S ++ ++ N + + F L+ +++ + + L
Sbjct: 252 CEMS--------VESINLQKHYFFN----ISSNTFHCFSGLQELDLTATHL-----SELP 294
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 644
L+ L L+ N + + S PSL L++ + L
Sbjct: 295 SGLVGLSTLKKLVLSANKFEN---LC-QISASNFPSLTHLSIKGNTKRL---ELGTGCLE 347
Query: 645 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ L +++L+ ++I +L ++N + L+ +N+S N+
Sbjct: 348 NLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEP 388
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F +L L +++ + IY + D F+ L L L N + + + ALS
Sbjct: 53 FSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTANPLIF---MAET-ALSGP 104
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
+L L + S L + TLE + L N IS + L KLK
Sbjct: 105 KALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHIS---SIKL-PKGFPTEKLK 156
Query: 679 QINVSENQF 687
++ N
Sbjct: 157 VLDFQNNAI 165
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 37/219 (16%), Positives = 63/219 (28%), Gaps = 37/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L LDL+ I + R L+ L L N L + AL
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHR------LDTLVLTANPLI----FMAETALSGP---- 104
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
ALK + + + + KTLE + + N I +
Sbjct: 105 ------KALKHLFFIQTGI----SSIDFIPLHNQKTLESLYLGSNHISSIK----LPKGF 150
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ L+ L+ +N I Y + + +S L L+L L + I D+
Sbjct: 151 PTEKLKVLDFQNNAIHY---LS-KEDMSSLQQATNLSLN---LNGNDIAGIEPGAFDSAV 203
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
+ +N + + L L +
Sbjct: 204 FQSLNFGGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDD 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 4e-08
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 50/241 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 21 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 70
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYH 577
+ + PL L N++++ K LK L+ + + NGI
Sbjct: 71 FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-------LKDLKKLKSLSLEHNGISD 123
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637
+ + L L L +N IT LS+L L L+L D +
Sbjct: 124 I------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170
Query: 638 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697
L T L+++ L+ N IS ++A+ L + + + + +
Sbjct: 171 -----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 698 L 698
L
Sbjct: 220 L 220
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 48/230 (20%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALHDC 524
+ ++ +++ + +G+ L + +L LN N L +T K L
Sbjct: 45 IDQIIANNSDIKSV--QGIQYLPN------VTKLFLNGNKLTDIKPLTNLKNLGWL--FL 94
Query: 525 YESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYHVG 579
E+ K+ S L LK N + + G L LE + + N I +
Sbjct: 95 DENKIKDLSSLKDLKKLKSLSLEHNGISDING-------LVHLPQLESLYLGNNKITDI- 146
Query: 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639
L L+L DN I+ I L+ L L L L + S +
Sbjct: 147 -----TVLSRLTKLDTLSLEDNQISD---IV---PLAGLTKLQNLYLSKNHI-----SDL 190
Query: 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ L L+ + L E + N + ++
Sbjct: 191 -RALAGLKNLDVLELFSQECL----NKPINHQSNLVVPNTVKNTDGSLVT 235
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 38/228 (16%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ + A L RSS + L L++ + L S+ +
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSS----VRHLDLSHGFV----FSLNSRVFETLKD- 291
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
LKV N++ K+ F L L+ + + N + + S F
Sbjct: 292 ---------LKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELY----SSNF 334
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS-AGASSIAK-YLTD 645
+ +++L N I I L L L+L D L + SI +L+
Sbjct: 335 YGLPKVAYIDLQKNHIAI---IQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 646 N--TTLEDVNLTCNEISVQG----GLDLVKAMKNKTKLKQINVSENQF 687
N TL +NLT N I + LD++ + L+ + +++N+F
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 30/154 (19%)
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALS---------------------DAFEENKNL 593
L V + L T ER+ + N I V ++ +AF NL
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 594 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 653
R L+L + I + + A L L L L C L A Y + L ++
Sbjct: 76 RILDLGSSKIYF---LHPD-AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLD 129
Query: 654 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+ N+I L L + LK I+ S NQ
Sbjct: 130 LSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQI 160
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
F+ L L +++ + IY + DAF+ +L L L ++
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRN 121
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677
L +L L+L ++S + +L+ ++ + N+I + +L + ++ KT L
Sbjct: 122 LKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT-L 176
Query: 678 KQINVSENQFGEEGVEEMEKLMKSF 702
+++ N + K M F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPF 201
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 55/252 (21%)
Query: 449 TEIPDALRYL---GNGLQ--QAGA-----RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
IP A + + GN + A + L L L N I L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL------ 81
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
LE+L L++N + + H L R L+ + +
Sbjct: 82 LEQLDLSDNAQ-LR--SVDPATFHGLG----------RLHTLHLDRCGLQE----LGPGL 124
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F+ L L+ + + N + + D F + NL HL L+ N I+ +P A L
Sbjct: 125 FRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISS---VPER-AFRGL 176
Query: 619 PSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKT 675
SL L L + A D L + L N + ++ A+
Sbjct: 177 HSLDRLLLHQNRVAHVHPHA------FRDLGRLMTLYLFANNLSALPTE-----ALAPLR 225
Query: 676 KLKQINVSENQF 687
L+ + +++N +
Sbjct: 226 ALQYLRLNDNPW 237
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 62/319 (19%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWK-DMFTGRMKTEIPDALRYLGNGLQQ 464
L + L+ + + + IA + + L + F+ D L + +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLV--LSSCEGFS-------TDGLAAIAATCR- 156
Query: 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT---------GCK 515
L ELDL ++ + L+ + +L L ++ ++ C
Sbjct: 157 ---NLKELDLRESDVDDVSGHWLSHFPDT--YTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 516 LLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLE------------NEGAKMLAAVFKKL 562
L L+ L + +LE + L+
Sbjct: 212 NLKSLKLNRAVPLE-------KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622
K L + +G + L + L LNL+ T+ L + L + P L
Sbjct: 265 KELRCL----SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQ 317
Query: 623 ILNLGDCLLKSAGASSIAKYLTDNTTL------EDVNLTCNEISVQGGLDLVKAMKNKTK 676
L + D ++ AG +A D L V ++ QG LV K
Sbjct: 318 RLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---LVSVSMGCPK 373
Query: 677 LKQINVSENQFGEEGVEEM 695
L+ + Q + +
Sbjct: 374 LESVLYFCRQMTNAALITI 392
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 28/240 (11%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS-KALHDCY 525
+L L + D I GL L +S C L EL++ + L+ + L
Sbjct: 315 KLQRLWVLDY----IEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
K L+ + ++ N +A + + ++ + L
Sbjct: 369 MGCPK------LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422
Query: 586 AF----EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
F E K+LR L+L+ +T K +G + +L++ G +
Sbjct: 423 GFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS 478
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
L + + + L ++ ++ + +S + + + M
Sbjct: 479 GCDS---LRKLEIRDCPFGDKALLANASKLET---MRSLWMSSCSVSFGACKLLGQKMPK 532
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 55/346 (15%), Positives = 107/346 (30%), Gaps = 44/346 (12%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
K++SI + ++ L L + A E++ L L L N +N K
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482
L+ E + L + G ++ AL L N + E L+ +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN------LTIEEFRLAYLDYYLD 272
Query: 483 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 542
+ L + L + F+L + + L +C +LK
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG---------------------IT 581
N+ N + L +LE +++ +NG+ G +
Sbjct: 333 TSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
+S F + L HL+ + + + L +L L++ + A
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGI--- 440
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++LE + + N L L +++S+ Q
Sbjct: 441 -FNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ F L+ +++ + I + A++ +L L L N I + LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AF 96
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
S L SL L + L S + TL+++N+ N I L + N T
Sbjct: 97 SGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSNLT 149
Query: 676 KLKQINVSENQF 687
L+ +++S N+
Sbjct: 150 NLEHLDLSSNKI 161
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS N G +D +S L+ L L+ NG+ + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGV---------ITMSSNFLG 394
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
++ L+ + L+ +VF L+ L +++ + F
Sbjct: 395 LEQ------LEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAF----NGIF 441
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+L L + N+ L ++L +L L+L C L+ ++ +
Sbjct: 442 NGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLS 494
Query: 648 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L+ +N+ N++ SV G T L++I + N +
Sbjct: 495 SLQVLNMASNQLKSVPDG-----IFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 38/198 (19%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L LDLS I L L L L N + L A
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSH------LSTLILTGNPIQ----SLALGAFSGLSS- 101
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ +A L + LKTL+ + + N I L + F
Sbjct: 102 ---------LQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFK---LPEYF 145
Query: 588 EENKNLRHLNLNDNTITYKGAIPLG--QALSKLPSLAI-LNLGDCLLKSAGASSIAKYLT 644
NL HL+L+ N I I + L ++P L + L+L + I
Sbjct: 146 SNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMN-----FIQPGAF 197
Query: 645 DNTTLEDVNLTCNEISVQ 662
L + L N S+
Sbjct: 198 KEIRLHKLTLRNNFDSLN 215
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 56/289 (19%), Positives = 86/289 (29%), Gaps = 83/289 (28%)
Query: 449 TEIPDALRYL---GNGLQ--QAGA-----RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
++P L N + + G L L L +N I A L
Sbjct: 48 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL------VK 101
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
LE L L+ N L E P L+ N + K+ +V
Sbjct: 102 LERLYLSKNQL-----------------KELPEKMPKTLQELRVHENEIT----KVRKSV 140
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG------ 612
F L + VE+ N + GI + AF+ K L ++ + D IT IP G
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNITT---IPQGLPPSLT 195
Query: 613 --------------QALSKLPSLAILNLGDCLLKS--AGA-----------------SSI 639
+L L +LA L L + + G+ +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Query: 640 AKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQ 686
L D+ ++ V L N IS K +++ N
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L EL L N + L L L +L L+ N + + + +L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSIS----AVDNGSLANTP- 240
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL--S 584
L+ N+L + K ++ V + N I +G
Sbjct: 241 ---------HLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
+ + ++L N + Y I + A + LG+
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWE-IQPS-TFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 58/240 (24%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
++P L LDL +N I +L L L L NN
Sbjct: 44 EKVPKDL----------PPDTALLDLQNNKITEIKDGDFKNLKN------LHTLILINNK 87
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+ K+ A L+ +N+L+ ++ + K L+ L
Sbjct: 88 IS----KISPGAFAPLV----------KLERLYLSKNQLK----ELPEKMPKTLQELR-- 127
Query: 569 EMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
++ IT + F + + L N + G I G A + L+ + +
Sbjct: 128 ------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENG-AFQGMKKLSYIRIA 179
Query: 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
D + ++I + L + L +++L N+I V ++K L ++ +S N
Sbjct: 180 DTNI-----TTIPQGLPPS--LTELHLDGNKITKVDAA-----SLKGLNNLAKLGLSFNS 227
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 57/349 (16%), Positives = 105/349 (30%), Gaps = 50/349 (14%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
K++SI + ++ L L + A E++ L L L N +N K
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGN-------------------GLQ 463
L+ E + L + G ++ AL L N L
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLS-KAL 521
+ L + + S F + L+L N KL S K L
Sbjct: 279 NCLTNVSSFSLVSV--------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 522 HDCYESSKKEGSPL---ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
S + +L+ RN L +G + +L+ +++ NG+
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGV--- 385
Query: 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
+S F + L HL+ + + L +L L++ + +
Sbjct: 386 --ITMSSNFLGLEQLEHLDFQHSNLK--QMSEFS-VFLSLRNLIYLDISHTHTR----VA 436
Query: 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++LE + + N L L +++S+ Q
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F L+ +++ + I + A++ +L L L N I + LG A S L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AFSGL 99
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
SL L + L S + TL+++N+ N I L + N T L+
Sbjct: 100 SSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLE 152
Query: 679 QINVSENQF 687
+++S N+
Sbjct: 153 HLDLSSNKI 161
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 36/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
LDLS N +G L+ L L+ + + A
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPE------LQVLDLSRCEIQ----TIEDGAYQSLSH-- 77
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L I N +++ + F L +L+++ + + + +
Sbjct: 78 --------LSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASL----ENFPIG 121
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
K L+ LN+ N I L + S L +L L+L ++S + +
Sbjct: 122 HLKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++L+ N ++ + + +L ++ + N
Sbjct: 179 NLSLDLSLNPMNF-----IQPGAFKEIRLHKLTLRNNFD 212
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 36/219 (16%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+DLS N + ++ L+ L L+ + + KA H +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSE------LQWLDLSRCEIE----TIEDKAWHGLHH-- 81
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588
L I N +++ F L +LE + + + + S
Sbjct: 82 --------LSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASL----ESFPIG 125
Query: 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 648
+ L+ LN+ N I L S L +L ++L +++ + + +
Sbjct: 126 QLITLKKLNVAHNFIHS---CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 649 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++++ N I KL ++ + N
Sbjct: 183 NLSLDMSLNPIDFIQDQAF-----QGIKLHELTLRGNFN 216
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 51/351 (14%), Positives = 97/351 (27%), Gaps = 55/351 (15%)
Query: 363 KLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAK 422
+++I+V Q + L + + A +K L L L GN N K
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMK 222
Query: 423 AIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482
L+ + L + ++ P + L + + E L+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD------VTIDEFRLTYTNDFSD 276
Query: 483 GVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLAL 537
+ L + + L + K S ++ C L
Sbjct: 277 DIVKFHCLAN------VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330
Query: 538 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG------------------ 579
K N+ L +L +++ +N + G
Sbjct: 331 KSLTLTMNKGSISFK------KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 580 ---ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
+S F + L+HL+ +T+ + A L L L++ K
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLK---RVTEFSAFLSLEKLLYLDISYTNTK---- 437
Query: 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
T+L + + N L N T L +++S+ Q
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK---DNTLSNVFANTTNLTFLDLSKCQL 485
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 42/212 (19%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
+ L L LD + + L L L ++
Sbjct: 389 IIMSANFMGLEE--------LQHLDFQHSTLKRVTEFSAFLSLEK-----LLYLDISYTN 435
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
I +L N ++ L+ VF L +
Sbjct: 436 TKI----DFDGIFLGLT----------SLNTLKMAGNSFKDNT---LSNVFANTTNLTFL 478
Query: 569 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628
++ + + + F+ L+ LN++ N + + + ++L SL+ L+
Sbjct: 479 DLSKCQLEQIS----WGVFDTLHRLQLLNMSHNNLLF---LDSS-HYNQLYSLSTLDCSF 530
Query: 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660
++ +S +L NLT N ++
Sbjct: 531 NRIE----TSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 47/222 (21%), Positives = 80/222 (36%), Gaps = 45/222 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
+ L+L +N I + L LE L+L N + ++ A +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHH------LEVLQLGRNSIR----QIEVGAFNGLA- 123
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
+L N L + + F+ L L + + N I + S A
Sbjct: 124 ---------SLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIESIP----SYA 166
Query: 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F +L L+L + + Y I G A L +L LNLG C +K LT
Sbjct: 167 FNRVPSLMRLDLGELKKLEY---ISEG-AFEGLFNLKYLNLGMCNIKDMPN------LTP 216
Query: 646 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
LE++ ++ N ++ G + + LK++ V +Q
Sbjct: 217 LVGLEELEMSGNHFPEIRPG-----SFHGLSSLKKLWVMNSQ 253
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 42/226 (18%), Positives = 71/226 (31%), Gaps = 53/226 (23%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L+L DN I L + L EL L NN + + S A +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSK------LRELWLRNNPIE----SIPSYAFNRVP-- 171
Query: 528 SKKEGSPLALKV-FIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 584
+L + +LE EGA F+ L L+ + + I +
Sbjct: 172 --------SLMRLDLGELKKLEYISEGA------FEGLFNLKYLNLGMCNIKDM------ 211
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKY 642
L L ++ N I G + L SL L + + + A
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE---IRPG-SFHGLSSLKKLWVMNSQVSLIERNA------ 261
Query: 643 LTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 687
+L ++NL N + S+ L ++++ N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHD-----LFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 50/204 (24%)
Query: 449 TEIP-DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507
T IP A YL L EL L +N I + L L L
Sbjct: 136 TVIPSGAFEYLSK--------LRELWLRNNPIESIPSYAFNRVPS------LMRLDLGEL 181
Query: 508 ------------GLGITGCKLLSKALHDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKM 554
GL L L C +PL L+ N +
Sbjct: 182 KKLEYISEGAFEGLF----NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE----I 233
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
F L +L+++ + + + + +AF+ +L LNL N ++ ++P
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-L 285
Query: 615 LSKLPSLAILNLG------DCLLK 632
+ L L L+L DC +
Sbjct: 286 FTPLRYLVELHLHHNPWNCDCDIL 309
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 48/240 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 522
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 24 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 73
Query: 523 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578
+ + PLA L N++++ + K LK L+ + + NGI +
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDI 127
Query: 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638
+ L L L +N IT I LS+L L L+L D +
Sbjct: 128 ------NGLVHLPQLESLYLGNNKIT---DI---TVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
L T L+++ L+ N IS ++A+ L + + + + + L
Sbjct: 174 ----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 54/219 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L L L+ N + LA L +L N + IT +++
Sbjct: 179 LYSLSLNYNQIE--DISPLASLT------SLHYFTAYVNQITDITPVANMTR-------- 222
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L G N++ + + L L +E+ N I + ++ A
Sbjct: 223 ---------LNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQI-----SDIN-AV 261
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
++ L+ LN+ N I+ I L+ L L L L + L + I T
Sbjct: 262 KDLTKLKMLNVGSNQIS---DIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LT 311
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
L + L+ N I+ ++ + + +K+ + +
Sbjct: 312 NLTTLFLSQNHITD------IRPLASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 56/234 (23%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCY 525
A + L + D++ ++ +L + + I G + L+
Sbjct: 22 AEGIRAVLQKA--------SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN------ 67
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
L+ N++ + L L + + N I +
Sbjct: 68 -----------LEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
A + NLR L LN++ I+ I L+ L + LNLG S L++
Sbjct: 105 ALQNLTNLRELYLNEDNISD---IS---PLANLTKMYSLNLGANHN-----LSDLSPLSN 153
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKL 698
T L + +T +++ V + N T L ++++ NQ + + + L
Sbjct: 154 MTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 45/237 (18%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSK-ALH 522
L EL L+++ + LA+L + + L L N ++ L+ +
Sbjct: 112 LRELYLNEDNIS--DISPLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 523 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ + L L N++E+ L +L N I +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDI--- 214
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
L L + +N IT + L+ L L L +G + A
Sbjct: 215 ---TPVANMTRLNSLKIGNNKIT---DLS---PLANLSQLTWLEIGTNQISDINA----- 260
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
+ D T L+ +N+ N+IS + + N ++L + ++ NQ G E +E + L
Sbjct: 261 -VKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 45/222 (20%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L+L +N I V L LE L+L+ N + + A +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRH------LEILQLSRNHIR----TIEIGAFNGLA- 112
Query: 527 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586
L NRL + F L L+ + + N I + S A
Sbjct: 113 ---------NLNTLELFDNRLTT----IPNGAFVYLSKLKELWLRNNPIESIP----SYA 155
Query: 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F +LR L+L + ++Y I G A L +L LNL C L+ LT
Sbjct: 156 FNRIPSLRRLDLGELKRLSY---ISEG-AFEGLSNLRYLNLAMCNLREIPN------LTP 205
Query: 646 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 686
L++++L+ N + +++ G + + L+++ + ++Q
Sbjct: 206 LIKLDELDLSGNHLSAIRPG-----SFQGLMHLQKLWMIQSQ 242
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 468 RLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526
L LDL + I L L L L L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNL----------------- 197
Query: 527 SSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 585
+PL L N L + F+ L L+++ M Q+ I + +
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVIE----RN 249
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------DCLLK 632
AF+ ++L +NL N +T +P + L L ++L +C +
Sbjct: 250 AFDNLQSLVEINLAHNNLT---LLPHD-LFTPLHHLERIHLHHNPWNCNCDIL 298
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
F L L +E+ N + + + AF L+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 616 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 674
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 675 TKLKQINVSENQF 687
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 23/205 (11%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L + + + +E + L++ C F L L + + L C
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--- 435
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--ALSD 585
K+ A + L + G + ++ + + +VG + L +
Sbjct: 436 --KKLRRFAFY---LRQGGLTDLGLSYIGQYSPNVRWML--------LGYVGESDEGLME 482
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
NL+ L + + + + A++KLPSL L + G +
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERA---IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP- 538
Query: 646 NTTLEDVNLT-CNEISVQGGLDLVK 669
+E + E++ QG + ++
Sbjct: 539 YWNIELIPSRRVPEVNQQGEIREME 563
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 37/192 (19%)
Query: 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-----FEENKNLRHLNL 598
RN + + G ++LA K+LK L +S + + L ++ +
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385
Query: 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDC-----LLKSAGASSIAKY----------- 642
+ IT + +G L L ++ L L G S+
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445
Query: 643 ----LTDN---------TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
LTD + + L S +G ++ + N L+++ + F E
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKLEMRGCCFSE 502
Query: 690 EGVEEMEKLMKS 701
+ + S
Sbjct: 503 RAIAAAVTKLPS 514
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND-NTITYKGAIPLGQ 613
+ + L+ L+ V + + + + L+ A +L L L+ + T G L
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGFTTDG---LLS 158
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 673
++ + L + + + + NT+LE +N E + DL +N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 674 KTKLKQINVSE 684
L + V +
Sbjct: 219 CRSLVSVKVGD 229
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 36/244 (14%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
TEIP +Q + L + N + + ++ + + + + N
Sbjct: 366 TEIPANF---CGFTEQ----VENLSFAHNKL-----KYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 568
+G K + + N++ K +F L +
Sbjct: 414 IGSVDGKNFD-------PLDPTPFKGINVSSINLSNNQIS----KFPKELFSTGSPLSSI 462
Query: 569 EMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625
+ N I + ++ F+ L ++L N +T + + LP L ++
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGID 519
Query: 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVS 683
L S +++TL+ + + + + + L Q+ +
Sbjct: 520 LSYNSF-----SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 684 ENQF 687
N
Sbjct: 575 SNDI 578
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 36/268 (13%), Positives = 81/268 (30%), Gaps = 58/268 (21%)
Query: 449 TEIPDALRYLGNGLQQAGARLVELDLSDNAF--GPIGVEGLADLLRSSCCFALEELKLNN 506
T++P L+ L + ++++ N G + L + ++ + +
Sbjct: 263 TKLPTFLKALPE--------MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 507 NGL-------GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 559
N L + K L + N+LE F
Sbjct: 315 NNLKTFPVETSLQKMK--------------------KLGMLECLYNQLEG-----KLPAF 349
Query: 560 KKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
L + + N I T + ++ + + +L+ N + Y IP +
Sbjct: 350 GSEIKLASLNLAYNQI-----TEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSV 401
Query: 619 PSLAILNLGDCLLKSAGA---SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
++ ++ + S + + +NL+ N+IS + +
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---KFPK-ELFSTGS 457
Query: 676 KLKQINVSENQFGEEGVEEMEKLMKSFG 703
L IN+ N E ++ ++F
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFK 485
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 53/235 (22%)
Query: 469 LVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALH 522
L L+ N G + ++ L L L N + T C +
Sbjct: 332 LGMLECLYNQLEGKL--PAFGSEIK------LASLNLAYNQI--TEIPANFCGFTEQ--- 378
Query: 523 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF--KKLKTLERVEMPQN---GIYH 577
++ N+L+ + +F K + + ++ N +
Sbjct: 379 --------------VENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS---A 634
L + N+ +NL++N I+ + S L+ +NL +L
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQIS--KFPK--ELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ + L ++L N+++ L L I++S N F +
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSFSK 527
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 49/249 (19%)
Query: 449 TEIPDALRYL---GNGLQQAGA-------RLVELDLSDNAFGPIGVEGLADLLRSSCCFA 498
T IP + L N LQ +L +L LS N G +D +S
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS---- 79
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
L+ L L+ NG+ +S L+ + L+ +V
Sbjct: 80 LKYLDLSFNGV-----ITMSSNFLGL----------EQLEHLDFQHSNLKQMSE---FSV 121
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
F L+ L +++ + F +L L + N+ + ++L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSF--QENFLPD-IFTEL 174
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKL 677
+L L+L C L+ ++ ++L+ +N++ N S+ K L
Sbjct: 175 RNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTF-----PYKCLNSL 225
Query: 678 KQINVSENQ 686
+ ++ S N
Sbjct: 226 QVLDYSLNH 234
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 66/242 (27%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L L +N I + + L + L++L ++ N L
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRK------LQKLYISKNHL-----------------V 115
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
P +L NR+ K+ VF L+ + +EM N + + G AF
Sbjct: 116 EIPPNLPSSLVELRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSGFE--PGAF 169
Query: 588 ----------EENK----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627
E K L L+L+ N I AI L L + L L LG
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELE-DLLRYSKLYRLGLG 225
Query: 628 DCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSEN 685
+ I TL +++L N++S V GL + L+ + + N
Sbjct: 226 HNQI-----RMIENGSLSFLPTLRELHLDNNKLSRVPAGL------PDLKLLQVVYLHTN 274
Query: 686 QF 687
Sbjct: 275 NI 276
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT--------GCKLLSKA 520
LVEL + DN + + L + +++ N L + G KL
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 579
+ + + + P L N+++ + + L R+ + N I +
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 580 ------------------ITALSDAFEENKNLRHLNLNDNTITY--KGAIPLGQALSKLP 619
++ + + K L+ + L+ N IT K
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 620 SLAILNLGD 628
++L +
Sbjct: 295 YYNGISLFN 303
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 19/236 (8%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
+L + + L+L D L SS +++L + L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS---PMKKLAFRGSVLTDESF 240
Query: 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574
L K L E S+ E L +E + + T+ R+ +PQ
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNP---SESDVVSELGKVETVTIRRLHIPQFY 297
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
+++ LS + + ++ + + ++ + +P L SL L+L + L+
Sbjct: 298 LFYD----LSTVYSLLEKVKRITVENSKVFL---VPCS-FSQHLKSLEFLDLSENLMVEE 349
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQFGE 689
+ + +L+ + L+ N + S+Q +++ +KN L +++S N F
Sbjct: 350 YLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSLDISRNTFHP 401
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 33/220 (15%), Positives = 79/220 (35%), Gaps = 45/220 (20%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ + + ++ + L LE L L+ N + K +
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKS------LEFLDLSENLMVEEYLK-----------N 353
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
S +G+ +L+ + +N L + + LK L +++ +N + D+
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTF-----HPMPDSC 406
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ + +R LNL+ I + +L +L++ + L S + +L
Sbjct: 407 QWPEKMRFLNLSSTGIR---VVKTCI----PQTLEVLDVSNNNL-----DSFSLFLPR-- 452
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+++ ++ N++ + L + +S NQ
Sbjct: 453 -LQELYISRNKLKT------LPDASLFPVLLVMKISRNQL 485
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ L+ + + + I + DAF +L HL+L+DN ++ ++
Sbjct: 43 HGDLRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLS---SLSSS-WF 94
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNK 674
L SL LNL ++ G +S+ L T L+ + + S +D
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIRRIDF----AGL 147
Query: 675 TKLKQINVSENQF 687
T L ++ +
Sbjct: 148 TSLNELEIKALSL 160
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
L EL L+ N + LA L L +L L NN + + L+K
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK-------- 266
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L G N++ N L L +E+ +N + +
Sbjct: 267 ---------LTELKLGANQISNISP------LAGLTALTNLELNENQLEDI------SPI 305
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
KNL +L L N I+ +S L L L + + L + T
Sbjct: 306 SNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDV------SSLANLT 353
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
+ ++ N+IS + + N T++ Q+ +++ + V +
Sbjct: 354 NINWLSAGHNQISD------LTPLANLTRITQLGLNDQAWTNAPVNYKANV 398
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK----ALHDC 524
L L+LS N + L+ L L++L N + L+ +
Sbjct: 136 LNRLELSSNTIS--DISALSGLTS------LQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 525 YESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583
S + L L+ IA N++ + L L+ + + N + +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236
Query: 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643
NL L+L +N I+ + LS L L L LG + + L
Sbjct: 237 -GTLASLTNLTDLDLANNQIS---NLA---PLSGLTKLTELKLGANQISNISP------L 283
Query: 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 698
T L ++ L N++ + + N L + + N V + KL
Sbjct: 284 AGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 46/239 (19%)
Query: 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-AL 521
A ++ L DL + + L+ + G+ G+ L++
Sbjct: 24 AEKMKTVLGKTNV--TDTVSQTDLDQ------VTTLQADRLGIKSIDGVEYLNNLTQINF 75
Query: 522 HDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 580
+ + L L + N++ + L L + + N I +
Sbjct: 76 SNNQLTDITPLKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDI-- 127
Query: 581 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640
D + NL L L+ NTI+ I ALS L SL L+ G+ +
Sbjct: 128 ----DPLKNLTNLNRLELSSNTISD---IS---ALSGLTSLQQLSFGNQVTDLKP----- 172
Query: 641 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 698
L + TTLE ++++ N++S + + T L+ + + NQ + + L
Sbjct: 173 --LANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQISDITPLGILTNL 223
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 59/247 (23%)
Query: 455 LRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 514
+R L L + ++ L+L+D I A +++L + N +
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR---- 106
Query: 515 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574
L + L V + RN L + + +F L + M N
Sbjct: 107 YLPPHVFQNV----------PLLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNN 152
Query: 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634
+ + D F+ +L++L L+ N +T + L +PSL N+ LL +
Sbjct: 153 LERIE----DDTFQATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST- 200
Query: 635 GASSIAKYLTDNTTLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQ 679
L +E+++ + N I+ V+G L L + N L +
Sbjct: 201 --------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252
Query: 680 INVSENQ 686
+++S N+
Sbjct: 253 VDLSYNE 259
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 676 KLKQINVSENQF 687
L+ + +S N+
Sbjct: 166 SLQNLQLSSNRL 177
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 18/143 (12%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603
+R+ + G A+ + L+ V + L + ++ ++ D+ I
Sbjct: 15 HDRIRDVGPDRAASEWL-LRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCI 73
Query: 604 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 661
G + L + + L C ++ +++ ++ ++ + C ++
Sbjct: 74 MSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129
Query: 662 QGGLDLVKAMKNKTKLKQINVSE 684
+G + A+ + LK + +S+
Sbjct: 130 KG----IIALHHFRNLKYLFLSD 148
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 44/237 (18%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALH-DCY 525
+ L I EG+ L L L+L +N + + K L+K +
Sbjct: 42 GITTLSAFGTGVTTI--EGVQYLN------NLIGLELKDNQITDLAPLKNLTKITELELS 93
Query: 526 ESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 581
+ K S +A +K ++ + L L+ + + N I ++
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITD------VTPLAGLSNLQVLYLDLNQITNI--- 144
Query: 582 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641
NL++L++ + ++ + L+ L L L D +
Sbjct: 145 ---SPLAGLTNLQYLSIGNAQVS---DLT---PLANLSKLTTLKADDNKISDI------S 189
Query: 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 698
L L +V+L N+IS V + N + L + ++ + V L
Sbjct: 190 PLASLPNLIEVHLKNNQISD------VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 23/220 (10%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
L L + + G +L S L+EL L N + TG
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGIS---GLQELTLENLEV--TGTAPPPLL------- 116
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
E + L + A + L+ + + Q + +
Sbjct: 117 ---EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQV 169
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
L L+L+DN + + K P+L +L L + +++ +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARV 228
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
L+ ++L+ N + + ++L +N+S
Sbjct: 229 QLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 645
F+ + +L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 646 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 687
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 468 RLVELDLSDNAF-GPI-GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 525
L LDLS N+ GP+ + L L+ L +++N L G L+
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSG------LKFLNVSSNTLDFPGKVSGGLKLN--- 151
Query: 526 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY-HVGITALS 584
+L+V N + + L+ + + N I V ++
Sbjct: 152 ----------SLEVLDLSANSISGANVVGW-VLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 644
NL L+++ N + IP L +L L++ L + ++ ++
Sbjct: 201 -------NLEFLDVSSNNFS--TGIP---FLGDCSALQHLDISGNKL----SGDFSRAIS 244
Query: 645 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
T L+ +N++ N+ G + + L+ ++++EN+F
Sbjct: 245 TCTELKLLNISSNQFV--GPIPPL----PLKSLQYLSLAENKF 281
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616
F + L +++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 617 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 660
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
+L L + + N + + S+AF NLR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 675
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 676 KLKQINVSENQF 687
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614
+ F L+ +++ + I + A++ +L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 673
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 674 KTKLKQINVSENQ 686
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 59/235 (25%)
Query: 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 527
++ L+L+D I A +++L + N + L +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNVP-- 123
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L V + RN L + + +F L + M N + + D F
Sbjct: 124 --------LLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 167
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 168 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 211
Query: 648 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQF 687
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 676 KLKQINVSENQ 686
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 6e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 636
H +T L E+ + HL+L+ N + L AL+ L L +L D L+
Sbjct: 450 HKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALE---- 499
Query: 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687
++ + + L+++ L N + ++ + + +L +N+ N
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
++L + +++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 618 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 674
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 675 TKLKQINVSENQ 686
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615
+ ++ L+ + + NGI + D+F +L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 673
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 674 KTKLKQINVSENQF 687
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618
+ ++ + + + + NL L + +T LS L
Sbjct: 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGL 111
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 678
SL +L++ + + I + ++L+ N G + + +K +LK
Sbjct: 112 TSLTLLDISHSAHDDSILTKINT----LPKVNSIDLSYN-----GAITDIMPLKTLPELK 162
Query: 679 QINVSENQFGE-EGVEEMEKL 698
+N+ + + G+E+ KL
Sbjct: 163 SLNIQFDGVHDYRGIEDFPKL 183
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 527
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 528 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRG---- 119
Query: 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 647
+ +++ L +N IT + + L+L + + + +A
Sbjct: 120 ---QGKKNIYLANNKIT---MLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 648 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 999 | |||
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 100.0 | |
| 2grr_B | 170 | RAN GTPase-activating protein 1; ubiquitin, conjug | 100.0 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.95 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.95 | |
| 2grr_B | 170 | RAN GTPase-activating protein 1; ubiquitin, conjug | 99.88 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.86 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.86 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.77 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.74 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.74 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.72 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.72 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.71 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.71 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.71 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.71 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.7 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.69 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.69 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.69 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.69 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.69 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.69 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.69 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.69 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.69 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.68 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.68 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.68 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.67 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.67 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.66 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.66 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.66 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.66 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.66 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.66 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.65 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.65 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.65 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.65 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.64 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.64 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.63 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.63 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.63 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.63 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.63 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.63 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.63 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.63 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.63 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.63 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.63 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.62 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.62 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.61 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.61 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.61 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.61 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.61 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.61 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.6 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.6 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.6 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.6 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.6 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.58 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.58 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.56 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.55 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.55 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.55 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.55 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.54 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.53 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.52 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.5 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.49 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.48 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.48 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.47 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.47 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.45 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.43 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.42 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.41 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.41 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.38 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.36 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.36 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.35 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.34 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.33 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.33 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.31 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.31 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.31 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.31 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.31 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.28 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.28 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.26 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.22 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.17 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.15 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.13 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.11 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.1 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.07 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.07 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.06 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.99 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.93 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.92 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.92 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.9 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.88 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.83 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.81 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.78 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.75 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.73 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.73 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.73 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.66 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.63 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.59 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.55 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.52 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.51 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.29 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.0 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.98 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.98 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.88 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.83 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.44 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 95.37 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 93.07 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 91.89 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 84.24 |
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=358.89 Aligned_cols=322 Identities=36% Similarity=0.536 Sum_probs=283.1
Q ss_pred EEeccCCCcCC--ChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHH
Q psy18075 378 LSFAGQGLKLD--NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDAL 455 (999)
Q Consensus 378 LsL~g~~L~~~--s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l 455 (999)
+++.+..++++ ++.++..++.++..+++|++|+|++|.|+..++..|+.++..+++|+.+...+...+++...+|.++
T Consensus 4 ~s~~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~ 83 (386)
T 2ca6_A 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83 (386)
T ss_dssp EECTTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH
T ss_pred EEecCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH
Confidence 45566666555 8899999999999999999999999999999999999999999999877777777788888899999
Q ss_pred HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCC
Q psy18075 456 RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPL 535 (999)
Q Consensus 456 ~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~ 535 (999)
..++.++. .+++|++|+|++|.|++.++..+...+.. |++|++|+|++|+|+..+...++..+..+.... ..+..+
T Consensus 84 ~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~-~~~~~~ 159 (386)
T 2ca6_A 84 RLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNK-KAKNAP 159 (386)
T ss_dssp HHHHHHHT-TCTTCCEEECCSCCCCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH-HHHTCC
T ss_pred HHHHHHHh-hCCcccEEECCCCcCCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh-hcccCC
Confidence 98887665 57899999999999999999989888854 579999999999999888889998887651000 000113
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhH-HhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~-aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
+|++|+|++|++++.++..++..+..+++|++|+|++|+|++.|+..+.. .+..+++|+.|+|++|.+++.|+..++..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988888 99999999999999999999888899999
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccC--CCCCCEEEccCCCCCCcchhhHHHhh-ccCCCcCEEEccCCCCChhc
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~--~~~L~~LdLs~N~I~~~g~~~L~~~L-~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+++|+.|+|++|.+++.|+..++.++.. +++|++|+|++|.|+..|+..++..+ .++++|++|+|++|+|+..+
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999999999999999999999965 89999999999999999999999988 55899999999999999988
Q ss_pred --HHHHHHHHhcCC
Q psy18075 692 --VEEMEKLMKSFG 703 (999)
Q Consensus 692 --~~~L~~~L~~l~ 703 (999)
+..+...+..++
T Consensus 320 ~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 320 DVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcC
Confidence 577887777766
|
| >2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=307.36 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=134.2
Q ss_pred ccccccccccccCCcHHHHhccCcchHHHHHHHhhcCccchhHHHHHHHHHHhhccccCCCCcCCCCchhHHHHHHHHHH
Q psy18075 775 QLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRE 854 (999)
Q Consensus 775 ~~~~~~~~~f~~~Ps~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 854 (999)
+..|+++++|+.+||+++|++||++| +.||.++++ +.|+++++++||||||+|+++.+++. +|++++||||++
T Consensus 11 ~~~p~~v~~FL~~Ps~ekll~Lg~~~-~~li~~q~~---~~d~ek~~~~~lKvSsv~~~~~~vk~---aal~~~daL~k~ 83 (170)
T 2grr_B 11 SPPPADVSTFLAFPSPEKLLRLGPKS-SVLIAQQTD---TSDPEKVVSAFLKVSSVFKDEATVRM---AVQDAVDALMQK 83 (170)
T ss_dssp ---CCCHHHHHHSCCHHHHHHTCTTH-HHHHHHTSC---TTCHHHHHHHHHHHHTTCCSSHHHHH---HHHHHHHHHHHH
T ss_pred CCCchhHHHHHcCCCHHHHHHhcchH-HHHHHHHhc---cccHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHH
Confidence 45789999999999999999999999 899888876 89999999999999999997766664 999999999999
Q ss_pred HhhhhhccCcchhhhHHHHHHhccccccccccccccCcccHHHHHHHHHhcCCCCCcCHHHHHHHhhcCCccccccccch
Q psy18075 855 LFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEKKSRAGIQL 934 (999)
Q Consensus 855 ~f~~~~~~~~~~~~~~~llv~lgllk~e~k~~k~~~~~~g~~~~l~~~~~~~~fp~~~~~~l~~fl~~~~~~~~~~~~~~ 934 (999)
+|+||+++++ .+.|+||||||||||||| ||++|||+||++||+||+||+|||++++++|++|++++.-....-.+.+
T Consensus 84 aF~~a~~~~~--~~~n~LLV~lGLLKSEdk-~k~~~~l~G~~~aL~~avqq~yFp~~~~~~lkaFl~kp~~~~~~~~~~r 160 (170)
T 2grr_B 84 AFNSSSFNSN--TFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSALESCSFAR 160 (170)
T ss_dssp HHTSTTCCHH--HHHHHHHHHTTSSCCSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHHHHHSCCHHHHTTHHHH
T ss_pred HHHHhccCcc--hHHHHHHHHhcchhhhhc-ccCCCCchHHHHHHHHHhccccccHHHHHHHHHHHhCCcccccccHHHH
Confidence 9999986443 577889999999999995 9999999999999999999999999999999999999955444444444
Q ss_pred HHHH
Q psy18075 935 DTVI 938 (999)
Q Consensus 935 ~~~~ 938 (999)
+.+.
T Consensus 161 ~~l~ 164 (170)
T 2grr_B 161 HSLL 164 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=310.93 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=248.6
Q ss_pred EEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCC------C
Q psy18075 408 SLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFG------P 481 (999)
Q Consensus 408 ~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~------~ 481 (999)
...|..+.|++.++..++.++..+++|+.+... .+++.. .....++..+ ..+++|++|+|++|.++ +
T Consensus 8 ~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~---~n~i~~---~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~ 80 (386)
T 2ca6_A 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLS---GNTIGT---EAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIP 80 (386)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECT---TSEECH---HHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCCCccEEECC---CCCCCH---HHHHHHHHHH-HhCCCccEEeCcccccCccccchh
Confidence 345666788999999999999988887644322 222222 2233333333 35789999999998665 3
Q ss_pred ccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh
Q psy18075 482 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561 (999)
Q Consensus 482 ~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~ 561 (999)
.++..++..+.. |++|++|+|++|.|+..++..++..+..++ +|++|+|++|.+++.+...++..+..
T Consensus 81 ~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~----------~L~~L~L~~n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 81 EALRLLLQALLK--CPKLHTVRLSDNAFGPTAQEPLIDFLSKHT----------PLEHLYLHNNGLGPQAGAKIARALQE 148 (386)
T ss_dssp HHHHHHHHHHTT--CTTCCEEECCSCCCCTTTHHHHHHHHHHCT----------TCCEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCcccEEECCCCcCCHHHHHHHHHHHHhCC----------CCCEEECcCCCCCHHHHHHHHHHHHH
Confidence 467777777754 579999999999999999999999988764 59999999999999999999998888
Q ss_pred c---------ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCC
Q psy18075 562 L---------KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLL 631 (999)
Q Consensus 562 ~---------~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L 631 (999)
+ ++|++|+|++|+|++.++..++..+..+++|++|+|++|.|++.|+..+.. .+..+++|+.|+|++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 8 899999999999999999999999999999999999999999988888877 889999999999999999
Q ss_pred CccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhcc--CCCcCEEEccCCCCChhcHHHHHHHH-hcCCCCCEE
Q psy18075 632 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN--KTKLKQINVSENQFGEEGVEEMEKLM-KSFGMAAAL 708 (999)
Q Consensus 632 ~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~--~~sL~~LdLs~N~Is~eg~~~L~~~L-~~l~~L~~L 708 (999)
++.|+..++..+..+++|++|+|++|.|++.|+..++..+.. +++|++|+|++|.|+..|+..++..+ ..+++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999999999999999999965 99999999999999999999999988 668999999
Q ss_pred eCCCCCCCC
Q psy18075 709 VLEDDEGEC 717 (999)
Q Consensus 709 ~Ls~N~~e~ 717 (999)
++++|...+
T Consensus 309 ~l~~N~l~~ 317 (386)
T 2ca6_A 309 ELNGNRFSE 317 (386)
T ss_dssp ECTTSBSCT
T ss_pred EccCCcCCc
Confidence 999986443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=296.50 Aligned_cols=350 Identities=19% Similarity=0.253 Sum_probs=285.7
Q ss_pred ccCCccccCCCCChhh--HHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHH
Q psy18075 344 NHKGRMTDKPNDDVSD--ILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAA 421 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~--I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~ 421 (999)
+.+++.+++..+...+ +..+...+.. ..+.++.|++++|.+ ++.++..++.++..+++|++|+|++|.+++.++
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQT-PSCKIQKLSLQNCCL---TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCS-TTCCCCEEECTTSCC---BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhh-CCCceeEEEccCCCC---CHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 3556666666666554 3334444443 223689999999998 788999999999999999999999999999999
Q ss_pred HHHHHHHhh-ChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCcc
Q psy18075 422 KAIADALSK-HEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 500 (999)
Q Consensus 422 ~~L~~~L~~-~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~ 500 (999)
..++..+.. .++|+.+ ++..+++... .+..+...+ ..+++|++|+|++|.+++.++..++..+..+. ++|+
T Consensus 131 ~~l~~~l~~~~~~L~~L---~L~~n~l~~~---~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~~L~ 202 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKL---QLEYCSLSAA---SCEPLASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSP-CQLE 202 (461)
T ss_dssp HHHHHHHTSTTCCCCEE---ECTTSCCBGG---GHHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC-CCCC
T ss_pred HHHHHHHhcCCCcceEE---ECCCCCCCHH---HHHHHHHHH-hhCCCCCEEECcCCCcchHHHHHHHHHHhcCC-CCce
Confidence 999987653 3344332 2222233222 222333222 24679999999999999999998988876543 4899
Q ss_pred EEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHh-hcccccccccCCCccCchh
Q psy18075 501 ELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVG 579 (999)
Q Consensus 501 ~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It~~g 579 (999)
+|+|++|.++..++..++..+..++ +|++|++++|++++.|+..++..+. .+++|++|+|++|.|++.|
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~----------~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKA----------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCT----------TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCC----------CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 9999999999999888998888764 4999999999999999888887765 4789999999999999999
Q ss_pred hhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC-CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 580 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 580 ~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l-~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
+..++..+..+++|++|+|++|.+++.|...++..+... ++|+.|++++|.+++.++..++..+..+++|++|+|++|.
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 999999999999999999999999988888888877655 5999999999999999988899999999999999999999
Q ss_pred CCCcchhhHHHhhcc-CCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 659 ISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 659 I~~~g~~~L~~~L~~-~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
|++.|+..++..+.. +++|++|+|++|.|+++|+..++..+..+++|+.|++++|.-
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 999888888888876 789999999999999999999999999999999999998865
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=285.57 Aligned_cols=322 Identities=20% Similarity=0.270 Sum_probs=199.7
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCC-CcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVK-VLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~-~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ ++.++..++..+..+. +|++|+|++|.|++.++..+..++..+++|+.+.. ..+++. .
T Consensus 57 ~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L---s~n~i~---~ 127 (461)
T 1z7x_W 57 ALAELNLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL---SDNLLG---D 127 (461)
T ss_dssp TCCEEECTTCCC---HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC---CSSBCH---H
T ss_pred CcCEEeCCCCcC---ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC---CCCcCc---h
Confidence 455556655555 4444444444444332 46666666666665555555555555555433211 111111 1
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
.+...++..+....++|++|+|++|.+++.++..+...+.. |++|++|+|++|.+++.+...++..+...
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-------- 197 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA--KPDFKELTVSNNDINEAGVRVLCQGLKDS-------- 197 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh--CCCCCEEECcCCCcchHHHHHHHHHHhcC--------
Confidence 22333444444444566666666666666666666665543 34666666666666666666666555432
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhh-hcccCceeeccCCCCCcCCcccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~-~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
.++|++|++++|.+++.++..++..+..+++|++|+|++|.|++.|+..++..+. .+++|++|+|++|.+++.|+..+
T Consensus 198 -~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 198 -PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp -CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred -CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 1347777777777777776667777777777777777777777766666666544 35677777777777776666666
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+..+..+++|++|++++|.+++.|...++..+... ++|++|+|++|.+++.++..++..+..+++|++|+|++|.|++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 66666677777777777777766666666666555 57777777777777777667777777777777777777777777
Q ss_pred cHHHHHHHHhc-CCCCCEEeCCCCCC
Q psy18075 691 GVEEMEKLMKS-FGMAAALVLEDDEG 715 (999)
Q Consensus 691 g~~~L~~~L~~-l~~L~~L~Ls~N~~ 715 (999)
|...+...+.. +++|+.|++++|.-
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCC
Confidence 77777766665 56777777777644
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=265.78 Aligned_cols=281 Identities=18% Similarity=0.225 Sum_probs=203.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCC-CcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVK-VLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~-~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ ++.+...++.++..++ +|++|+|++|.|++.++..++.++...
T Consensus 23 ~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--------------------- 78 (362)
T 3goz_A 23 GVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI--------------------- 78 (362)
T ss_dssp TCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---------------------
T ss_pred CceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---------------------
Confidence 477777777777 5666677777777777 777777777777777666666544421
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+++|++|+|++|.+++.+...++..+.... ++|++|+|++|.|+..+...++.++...
T Consensus 79 -------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-------- 136 (362)
T 3goz_A 79 -------------PANVTSLNLSGNFLSYKSSDELVKTLAAIP-FTITVLDLGWNDFSSKSSSEFKQAFSNL-------- 136 (362)
T ss_dssp -------------CTTCCEEECCSSCGGGSCHHHHHHHHHTSC-TTCCEEECCSSCGGGSCHHHHHHHHTTS--------
T ss_pred -------------CCCccEEECcCCcCChHHHHHHHHHHHhCC-CCccEEECcCCcCCcHHHHHHHHHHHhC--------
Confidence 246778888888887777777777765432 4788888888888777777777766542
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcc-cccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIP 610 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~-sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~ 610 (999)
+.+|++|+|++|++++.|+..++..+..++ +|++|+|++|+|++.+...++..+..++ +|+.|+|++|.|++.|+..
T Consensus 137 -~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 137 -PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp -CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred -CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 134788888888888777777777777665 7888888888887777777777777774 7888888888887777777
Q ss_pred ccccccC-CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC---CCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 611 LGQALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE---ISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 611 L~~aL~~-l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~---I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
++.++.. +++|++|+|++|.+++.|...++..+..+++|+.|+|++|. ++..+...+...+..+++|+.||+++|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 7777766 34788888888888777777777777777778888888876 5555666666677777778888888888
Q ss_pred CChhcHHHHHHHHhc
Q psy18075 687 FGEEGVEEMEKLMKS 701 (999)
Q Consensus 687 Is~eg~~~L~~~L~~ 701 (999)
+.+.+...+...++.
T Consensus 296 l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 296 IHPSHSIPISNLIRE 310 (362)
T ss_dssp CCGGGCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHH
Confidence 777766666655544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=265.21 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=253.4
Q ss_pred EEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHH
Q psy18075 378 LSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRY 457 (999)
Q Consensus 378 LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~ 457 (999)
+.++.+++. ..++..+...++|++|+|++|.|++.+...++.++..++
T Consensus 3 ~~ls~n~~~-------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~------------------------- 50 (362)
T 3goz_A 3 YKLTLHPGS-------NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP------------------------- 50 (362)
T ss_dssp EECCCCTTC-------CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC-------------------------
T ss_pred cccccccch-------HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC-------------------------
Confidence 345555552 245566677777999999999999988887776655221
Q ss_pred hhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCc
Q psy18075 458 LGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLAL 537 (999)
Q Consensus 458 L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sL 537 (999)
.+|++|+|++|.|++.+...++.++... +++|++|+|++|.|+..+...++..+..+. ++|
T Consensus 51 ---------~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~---------~~L 111 (362)
T 3goz_A 51 ---------ASVTSLNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIP---------FTI 111 (362)
T ss_dssp ---------TTCCEEECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSC---------TTC
T ss_pred ---------CceeEEECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCC---------CCc
Confidence 2799999999999999999999988754 259999999999999999999999887751 359
Q ss_pred cEEEccCCCCCchhHHHHHHHHhh-cccccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCcccccccc
Q psy18075 538 KVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 538 k~L~Ls~N~L~d~g~~~L~~~L~~-~~sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
++|+|++|++++.+...++..+.. +++|++|+|++|.|++.|+..++.++...+ +|++|+|++|.+++.+...++.++
T Consensus 112 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 191 (362)
T 3goz_A 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH
Confidence 999999999999999999999988 469999999999999999999999998887 999999999999999998999988
Q ss_pred cCCC-CCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC---CChh
Q psy18075 616 SKLP-SLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ---FGEE 690 (999)
Q Consensus 616 ~~l~-sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~---Is~e 690 (999)
..++ +|+.|+|++|.+++.|+..++.++... ++|++|+|++|.|++.|...+...+..+++|+.|+|++|. ++.+
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 8885 999999999999999999999999885 6999999999999999999999888999999999999998 8888
Q ss_pred cHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 691 GVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 691 g~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+...+..+++|+.|++++|.-.
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhccCCceEEEecCCCcCC
Confidence 88889899999999999999998754
|
| >2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=204.94 Aligned_cols=135 Identities=28% Similarity=0.406 Sum_probs=115.8
Q ss_pred ccccccchhHhhcCCcHHHHhhcCCchhhhhHhhhcCCchhHHHHHHHHHHhhhcccccCcccccchhhhhhcccccccc
Q psy18075 71 SQLKQHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVLSCSLMKSTVS 150 (999)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (999)
+...|++|++||++||+++|++||++++++|.|+++..++++++++| |||||++++
T Consensus 10 ~~~~p~~v~~FL~~Ps~ekll~Lg~~~~~li~~q~~~~d~ek~~~~~----lKvSsv~~~-------------------- 65 (170)
T 2grr_B 10 SSPPPADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAF----LKVSSVFKD-------------------- 65 (170)
T ss_dssp ----CCCHHHHHHSCCHHHHHHTCTTHHHHHHHTSCTTCHHHHHHHH----HHHHTTCCS--------------------
T ss_pred CCCCchhHHHHHcCCCHHHHHHhcchHHHHHHHHhccccHHHHHHHH----HHHHHHhcc--------------------
Confidence 44579999999999999999999999999999999999999999999 999999997
Q ss_pred cccchhhhhhhccccccchhhHHHHHHHHhhhhcccccccccCCCCcchhhhHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q psy18075 151 LKTENLVFVLTKNHCAYHVDRYLESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHL 230 (999)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~n~lL~~~ 230 (999)
++.++.++.++. |+|||+||+||...+. + ..|.+|+||
T Consensus 66 ----------------------------~~~vk~aal~~~------------daL~k~aF~~a~~~~~-~-~~n~LLV~l 103 (170)
T 2grr_B 66 ----------------------------EATVRMAVQDAV------------DALMQKAFNSSSFNSN-T-FLTRLLVHM 103 (170)
T ss_dssp ----------------------------SHHHHHHHHHHH------------HHHHHHHHTSTTCCHH-H-HHHHHHHHT
T ss_pred ----------------------------cHHHHHHHHHHH------------HHHHHHHHHHhccCcc-h-HHHHHHHHh
Confidence 455666666555 9999999999954444 4 558899999
Q ss_pred ccccccCCCcccccchhhHHHhhhhhhccccccccchHHHHH
Q psy18075 231 GLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLA 272 (999)
Q Consensus 231 ll~k~e~~~~r~~~~LqG~l~~~~~v~~vN~f~Cl~e~~~~s 272 (999)
||+|+|++ +|+.|.++||+.++++++..+||+--+...+++
T Consensus 104 GLLKSEdk-~k~~~~l~G~~~aL~~avqq~yFp~~~~~~lka 144 (170)
T 2grr_B 104 GLLKSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLA 144 (170)
T ss_dssp TSSCCSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHH
T ss_pred cchhhhhc-ccCCCCchHHHHHHHHHhccccccHHHHHHHHH
Confidence 99999996 899999999999999999999999776655554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-22 Score=225.12 Aligned_cols=214 Identities=20% Similarity=0.214 Sum_probs=186.0
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
+.|+.|+|++|.|++.+...++.++... +++|++|+|++|.|++.+...++..+.. |+.|+|++|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------------L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG-RHALDEVNLASCQLDPAGLRTLLPVFLR-------------ARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC-SSCEEEEECTTCCCCHHHHHHTHHHHHT-------------EEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC-CCCceEEEecCCCCCHHHHHHHHHHHHh-------------ccHhhcCCCC
Confidence 5899999999999999999999998754 3589999999999999999888888764 8999999999
Q ss_pred CCchhHHHHHHHHh-hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 547 LENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 547 L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
|++.|+..++.++. .+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++.++..+++|+.|+
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 99999999999986 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccC-CCcCEEE--ccCCCCChhcHHH
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN--VSENQFGEEGVEE 694 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~-~sL~~Ld--Ls~N~Is~eg~~~ 694 (999)
|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..+....... ..|+.+. +.+|.++++....
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~ 289 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHH
Confidence 9999999999999999999999999999999999999998888755443 2388888 8888887754443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=221.79 Aligned_cols=207 Identities=22% Similarity=0.281 Sum_probs=141.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcC-CCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEV-KVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~-~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.+ +..++..++.++... ++|++|+|++|.|++.++..++.++.
T Consensus 73 ~L~~L~Ls~n~l---~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----------------------- 126 (372)
T 3un9_A 73 SLRQLNLAGVRM---TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL----------------------- 126 (372)
T ss_dssp TCCEEECTTSCC---CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-----------------------
T ss_pred hCCEEEecCCCC---CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-----------------------
Confidence 455677777777 677777777777754 57888888888887776666554332
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+|++|+|++|.|++.++..++.++..+. ++|++|+|++|.|++.++..++.++..+
T Consensus 127 ---------------~L~~L~Ls~n~l~~~~~~~L~~~L~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-------- 182 (372)
T 3un9_A 127 ---------------RARKLGLQLNSLGPEACKDLRDLLLHDQ-CQITTLRLSNNPLTAAGVAVLMEGLAGN-------- 182 (372)
T ss_dssp ---------------TEEEEECCSSCCCHHHHHHHHHHHHSTT-CCCCEEECCSSCCHHHHHHHHHHHHHTC--------
T ss_pred ---------------hccHhhcCCCCCCHHHHHHHHHHHHhcC-CccceeeCCCCCCChHHHHHHHHHHhcC--------
Confidence 5677788888887777777777775443 3777777777777777777777777654
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..++
T Consensus 183 --~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 183 --TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp --SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred --CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 337777777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred ccccCC-CCCcEEE--cCCCCCC
Q psy18075 613 QALSKL-PSLAILN--LGDCLLK 632 (999)
Q Consensus 613 ~aL~~l-~sL~~Ld--Ls~N~L~ 632 (999)
...... ..|+.+. +..+.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 543322 1266665 5555554
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=208.38 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=122.9
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHh-----------------------------------hcccccccccCCCccCch
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFK-----------------------------------KLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~-----------------------------------~~~sLe~LdLs~N~It~~ 578 (999)
.++|+.|++++|++.......+...+. ..++|+.|+|++|.|+..
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 357899999999888766655544321 014677788888887754
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
++..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.++... +..+..+++|++|+|++|.
T Consensus 291 ----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 291 ----LKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSC
T ss_pred ----chhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCc
Confidence 44566778899999999998884 23446677889999999999886443 4556778999999999999
Q ss_pred CCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCCC
Q psy18075 659 ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 659 I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
|+.. .+..+..+++|++|+|++|.|+... ...+..+++|+.|++++|.-..+-
T Consensus 359 l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 359 IRAL----GDQSFLGLPNLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCEE----CTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccc----ChhhccccccccEEECCCCccccCC----HhHhccCCcccEEEccCCCcccCC
Confidence 8763 2345677899999999999987632 234678889999999998776544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=185.67 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=180.1
Q ss_pred ccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHH
Q psy18075 344 NHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKA 423 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~ 423 (999)
..+++.+++......++.. +.. -..++.|++++|.+... ..+..+++|++|+|++|.+.....
T Consensus 65 ~~~L~~L~l~~n~i~~~~~----~~~--l~~L~~L~L~~n~i~~~---------~~~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP----LSN--LVKLTNLYIGTNKITDI---------SALQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTT--CTTCCEEECCSSCCCCC---------GGGTTCTTCSEEECTTSCCCCCGG--
T ss_pred cCCccEEEccCCccccchh----hhc--CCcCCEEEccCCcccCc---------hHHcCCCcCCEEECcCCcccCchh--
Confidence 4455555555555554433 111 12567777777776321 236677778888887777765322
Q ss_pred HHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEE
Q psy18075 424 IADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503 (999)
Q Consensus 424 L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~ 503 (999)
+..+++|+.+... .+.....++. +..+++|+.|++++|.+..... + ..+++|++|+
T Consensus 128 ----~~~l~~L~~L~l~---~n~~~~~~~~---------~~~l~~L~~L~l~~~~~~~~~~--~------~~l~~L~~L~ 183 (347)
T 4fmz_A 128 ----LANLTKMYSLNLG---ANHNLSDLSP---------LSNMTGLNYLTVTESKVKDVTP--I------ANLTDLYSLS 183 (347)
T ss_dssp ----GTTCTTCCEEECT---TCTTCCCCGG---------GTTCTTCCEEECCSSCCCCCGG--G------GGCTTCSEEE
T ss_pred ----hccCCceeEEECC---CCCCcccccc---------hhhCCCCcEEEecCCCcCCchh--h------ccCCCCCEEE
Confidence 3334444332211 1111111111 2345678888888888765543 1 2346788888
Q ss_pred ccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhh
Q psy18075 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 504 Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~L 583 (999)
+++|.++.... +.. +.+|+.|++++|.+.+... +..+++|++|+|++|.++...
T Consensus 184 l~~n~l~~~~~------~~~----------l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~---- 237 (347)
T 4fmz_A 184 LNYNQIEDISP------LAS----------LTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLS---- 237 (347)
T ss_dssp CTTSCCCCCGG------GGG----------CTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG----
T ss_pred ccCCccccccc------ccC----------CCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCc----
Confidence 88887764332 222 2458888888888875432 566788888888888887642
Q ss_pred hHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 584 a~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
. +..+++|++|+|++|.++. + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.++..
T Consensus 238 -~-~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~- 302 (347)
T 4fmz_A 238 -P-LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNE- 302 (347)
T ss_dssp -G-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGG-
T ss_pred -c-hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCc-
Confidence 1 6677888888888888874 2 3466788888888888888753 3456678888888888888763
Q ss_pred hhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 664 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 664 ~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
....+..+++|++|++++|+++.... +..+++|+.|++++|.-
T Consensus 303 ---~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 ---DMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVI 345 (347)
T ss_dssp ---GHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC--
T ss_pred ---ChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhhcc
Confidence 34556678888888888888876321 67788888888888753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=199.86 Aligned_cols=316 Identities=16% Similarity=0.126 Sum_probs=186.5
Q ss_pred cCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHH
Q psy18075 345 HKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAI 424 (999)
Q Consensus 345 ~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L 424 (999)
..++.+++..+....+.. ..+... ..++.|++++|.+.. . .-..++..+++|++|+|++|.+.......+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~--~~~~~l--~~L~~L~L~~n~~~~--~----i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE--TSFSRL--QDLQFLKVEQQTPGL--V----IRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECT--TTTSSC--TTCCEEECCCCSTTC--E----ECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CccCEEEecCCccCcCCh--hHhccC--ccccEEECcCCcccc--e----ECcccccccccCCEEeCCCCccCccChhhc
Confidence 344555555554444321 111111 256677777776521 0 001235566777777777777765433222
Q ss_pred HHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEc
Q psy18075 425 ADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKL 504 (999)
Q Consensus 425 ~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~L 504 (999)
..+++|+.+ ++..+++...+|. ...+..+++|++|+|++|.+.......+ + ..+++|++|+|
T Consensus 100 ----~~l~~L~~L---~L~~n~l~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~--~~l~~L~~L~L 161 (455)
T 3v47_A 100 ----NGLANLEVL---TLTQCNLDGAVLS------GNFFKPLTSLEMLVLRDNNIKKIQPASF---F--LNMRRFHVLDL 161 (455)
T ss_dssp ----TTCTTCCEE---ECTTSCCBTHHHH------SSTTTTCTTCCEEECCSSBCCSCCCCGG---G--GGCTTCCEEEC
T ss_pred ----cCcccCCEE---eCCCCCCCccccC------cccccCcccCCEEECCCCccCccCcccc---c--CCCCcccEEeC
Confidence 233344322 2222222221111 1123345677777777777755432221 1 12357777777
Q ss_pred cCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHH----HHHhhcccccccccCCCccCchhh
Q psy18075 505 NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA----AVFKKLKTLERVEMPQNGIYHVGI 580 (999)
Q Consensus 505 s~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~----~~L~~~~sLe~LdLs~N~It~~g~ 580 (999)
++|.++......+... ...+|+.|++++|.+.+.+...+. ..+..+++|++|+|++|.++....
T Consensus 162 ~~n~l~~~~~~~l~~l------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 162 TFNKVKSICEEDLLNF------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp TTCCBSCCCTTTSGGG------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred CCCcccccChhhhhcc------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 7777764433333221 113577888888777653322111 123345789999999999987654
Q ss_pred hhhhHHhh-----------------------------------hcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 581 TALSDAFE-----------------------------------ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 581 ~~La~aL~-----------------------------------~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
..+...+. ..++|+.|+|++|.+.. .++..+..+++|+.|+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----LLKSVFSHFTDLEQLT 305 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE----ECTTTTTTCTTCCEEE
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc----cchhhcccCCCCCEEE
Confidence 44443211 11467777888777764 3455677788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
|++|.++... +..+..+++|+.|+|++|.|+.. .+..+..+++|++|+|++|.|+.. .+..+..+++|
T Consensus 306 Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 373 (455)
T 3v47_A 306 LAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNL 373 (455)
T ss_dssp CTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCEE----CTTTTTTCTTC
T ss_pred CCCCcccccC----hhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCccccc----Chhhccccccc
Confidence 9999987543 34566778999999999988753 244567889999999999998763 23556778999
Q ss_pred CEEeCCCCCCC
Q psy18075 706 AALVLEDDEGE 716 (999)
Q Consensus 706 ~~L~Ls~N~~e 716 (999)
+.|++++|.-.
T Consensus 374 ~~L~L~~N~l~ 384 (455)
T 3v47_A 374 KELALDTNQLK 384 (455)
T ss_dssp CEEECCSSCCS
T ss_pred cEEECCCCccc
Confidence 99999988654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=198.02 Aligned_cols=299 Identities=17% Similarity=0.152 Sum_probs=200.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCc-----
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMK----- 448 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~----- 448 (999)
.++.|+++++.+ +......+...+..+++|+.|+|++|.+.. +...+...++|+.+.... +.+...
T Consensus 193 ~L~~L~L~~n~~---~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~ 263 (592)
T 3ogk_B 193 SLEVLNFYMTEF---AKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGS-LNEDIGMPEKY 263 (592)
T ss_dssp CCCEEECTTCCC---SSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECB-CCCCTTCTTSS
T ss_pred CccEEEeeccCC---CccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccc-cccccchHHHH
Confidence 567778877777 322345566666777888888888877654 223344445553322211 100000
Q ss_pred ccc--chHHH---------HhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHH
Q psy18075 449 TEI--PDALR---------YLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLL 517 (999)
Q Consensus 449 ~~i--p~~l~---------~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~L 517 (999)
..+ +..+. .....++..+++|++|+|++|.+++.++..+ + ..|++|++|+|+ +.+++.+...+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~---~--~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL---I--QKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH---H--TTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH---H--HhCcCCCEEecc-CccCHHHHHHH
Confidence 000 00000 0001223356799999999999876665433 2 346899999999 66766665555
Q ss_pred HHHHhhhccCCcCCCCCCCccEEEcc-----------CCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHH
Q psy18075 518 SKALHDCYESSKKEGSPLALKVFIAG-----------RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 586 (999)
Q Consensus 518 a~~L~~~~~~s~~~g~~~sLk~L~Ls-----------~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~a 586 (999)
+.. + ++|++|+++ .|.+++.++..+. ..+++|++|+++.|.+++.++..++.
T Consensus 338 ~~~---~----------~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~- 400 (592)
T 3ogk_B 338 AQY---C----------KQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT- 400 (592)
T ss_dssp HHH---C----------TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH-
T ss_pred HHh---C----------CCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh-
Confidence 443 2 349999999 4788888776554 44789999999999999887666554
Q ss_pred hhhcccCceeecc----CCCCCcC----CcccccccccCCCCCcEEEcCCCC--CCccchHHHHHhccCCCCCCEEEccC
Q psy18075 587 FEENKNLRHLNLN----DNTITYK----GAIPLGQALSKLPSLAILNLGDCL--LKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 587 L~~~~~Lr~LdLS----~N~Lsd~----G~~~L~~aL~~l~sL~~LdLs~N~--L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.+++|+.|+|+ .|.+++. |+.. .+..+++|+.|+++.|. +++.+...++. .+++|+.|+|++
T Consensus 401 --~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---~~~~L~~L~L~~ 472 (592)
T 3ogk_B 401 --YLKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGY 472 (592)
T ss_dssp --HCCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCTTCCEEEEECCGGGCCHHHHHHHHH---SCTTCCEEEECS
T ss_pred --hCCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCCCCCEEEEecCCCCccHHHHHHHHH---hCccceEeeccC
Confidence 37899999996 6777753 3333 34568899999998765 77776655554 468899999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
|.+++.+. ...+..+++|++|+|++|.|++.+... .+..+++|+.|++++|.-.+.
T Consensus 473 n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 473 VGESDEGL---MEFSRGCPNLQKLEMRGCCFSERAIAA---AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCSSHHHH---HHHHTCCTTCCEEEEESCCCBHHHHHH---HHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCHHHH---HHHHhcCcccCeeeccCCCCcHHHHHH---HHHhcCccCeeECcCCcCCHH
Confidence 99987654 344567899999999999997765444 445788999999999875444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-18 Score=176.94 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=112.4
Q ss_pred HHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCC
Q psy18075 552 AKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL 630 (999)
Q Consensus 552 ~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~ 630 (999)
...++..+..+++|++|+|++| .|++.|+..|+.++..+++|++|+|++|.|++.|+..++.++..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4456666677777777777777 777777777777777777777777777777777777777777777777777777777
Q ss_pred CCccchHHHHHhccCCCCCCEEEc--cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 631 LKSAGASSIAKYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 631 L~d~g~~~La~aL~~~~~L~~LdL--s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++.|+..|+.++..+++|++|+| ++|.|++.|+..++.++..+++|++|+|++|.|+..|. ++.++..+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 777777777777777777888888 77888888877788888778888888888888777653 555555544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-19 Score=216.85 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHH-HHHhcCCCcCEEEccCCCCCh
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIV-DAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~-~aL~~~~~L~~LdLs~N~L~~ 418 (999)
.++.|++++|.+.- .++ ..+..+++|++|+|++|.+..
T Consensus 319 ~L~~L~L~~n~l~~-------~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 319 LLESLALSSNNFSG-------ELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp TCCEEECCSSEEEE-------ECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CccEEECCCCcccC-------cCCHHHHhcCCCCCEEeCcCCccCc
Confidence 45566666665520 111 125566666666666666543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-18 Score=212.86 Aligned_cols=210 Identities=20% Similarity=0.202 Sum_probs=143.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.+.......+. .+++|++|+|++|.++.... ..+. .+++|++|+|++|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N~l~~~~p----~~l~----------~l~~L~~L~L~~N 500 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIP----SGLS----------NCTNLNWISLSNN 500 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCC----GGGG----------GCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCCcccCcCC----HHHh----------cCCCCCEEEccCC
Confidence 35666666666666543333231 23567777777776653221 1122 2356888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcc----------------
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI---------------- 609 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~---------------- 609 (999)
++... ++..+..+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+...--.
T Consensus 501 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 501 RLTGE----IPKWIGRLENLAILKLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CCCSC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred ccCCc----CChHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 87743 334566678888888888888743 566677788888888888876521000
Q ss_pred --------------------------------------------------cccccccCCCCCcEEEcCCCCCCccchHHH
Q psy18075 610 --------------------------------------------------PLGQALSKLPSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 610 --------------------------------------------------~L~~aL~~l~sL~~LdLs~N~L~d~g~~~L 639 (999)
.++..+..+++|+.|+|++|.++.. +
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----i 648 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----I 648 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----C
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----C
Confidence 0111234456788899999988632 5
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+..++.|+.|+|++|.++. .++..+..+++|+.|||++|.++.. ++..+..++.|+.|++++|.-
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g----~ip~~l~~L~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISG----SIPDEVGDLRGLNILDLSSNKLDGR----IPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCEEC----CCGGGGGCCCCSEEECCSSEE
T ss_pred CHHHhccccCCEEeCcCCccCC----CCChHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECcCCcc
Confidence 6677778889999999998886 4667788889999999999998763 567788889999999988854
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=173.02 Aligned_cols=258 Identities=18% Similarity=0.230 Sum_probs=190.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.-. . . +..+++|++|+|++|.+..- ..+..+++|+.+... .+++.. ++.
T Consensus 67 ~L~~L~l~~n~i~~~---~-----~-~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~---~n~i~~-~~~ 127 (347)
T 4fmz_A 67 NLEYLNLNGNQITDI---S-----P-LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLN---EDNISD-ISP 127 (347)
T ss_dssp TCCEEECCSSCCCCC---G-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECT---TSCCCC-CGG
T ss_pred CccEEEccCCccccc---h-----h-hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECc---CCcccC-chh
Confidence 688899999988421 1 1 77889999999999988763 134555666443222 222221 221
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCC-CCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L-~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
+..+++|+.|++++|.. ..... + ..+++|++|++++|.++.... +..
T Consensus 128 ---------~~~l~~L~~L~l~~n~~~~~~~~--~------~~l~~L~~L~l~~~~~~~~~~------~~~--------- 175 (347)
T 4fmz_A 128 ---------LANLTKMYSLNLGANHNLSDLSP--L------SNMTGLNYLTVTESKVKDVTP------IAN--------- 175 (347)
T ss_dssp ---------GTTCTTCCEEECTTCTTCCCCGG--G------TTCTTCCEEECCSSCCCCCGG------GGG---------
T ss_pred ---------hccCCceeEEECCCCCCcccccc--h------hhCCCCcEEEecCCCcCCchh------hcc---------
Confidence 23567899999998854 33221 2 345789999999998864432 222
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|++++|++..... +..+++|+.|++++|.++.... +..+++|+.|+|++|.++.. .
T Consensus 176 -l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~-----~ 237 (347)
T 4fmz_A 176 -LTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDL-----S 237 (347)
T ss_dssp -CTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC-----G
T ss_pred -CCCCCEEEccCCccccccc------ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCC-----c
Confidence 3569999999999886432 6678999999999999986432 66789999999999999853 2
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
. +..+++|++|++++|.+++. ..+..+++|+.|++++|.|+.. ..+..+++|+.|++++|.++...
T Consensus 238 ~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~- 303 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNED- 303 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGG-
T ss_pred c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcC-
Confidence 2 67889999999999999753 3577789999999999999873 35778999999999999998753
Q ss_pred HHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
...+..+++|+.|++++|.-.+
T Consensus 304 ---~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 304 ---MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ---HHHHHTCTTCSEEECCSSSCCC
T ss_pred ---hhHhhccccCCEEEccCCcccc
Confidence 4566789999999999987643
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=189.05 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=130.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhc---cCCcCCCCCCCccEEEc
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY---ESSKKEGSPLALKVFIA 542 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~---~~s~~~g~~~sLk~L~L 542 (999)
+++|++|+|++|.+.......+ ..+++|++|+|++|.++......+... .... +.....+.+.+|+.|++
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTT------SSCTTCCEEECCSSCCSBCCGGGCTTC-SEEECCSSCCSEEECCSSCSEEEC
T ss_pred CCCCcEEECCCCccCccChhhc------cCCCCCCEEECCCCcCCcccccccccc-ceeecccccccccCCCCcceEEEC
Confidence 4566666666666654433222 123466666666666654332222110 0000 00001123456777777
Q ss_pred cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc
Q psy18075 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 543 s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~ 622 (999)
++|.+..... ...++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.. ..+..+..+++|+
T Consensus 213 ~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 213 SHNSINVVRG-------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLE 275 (390)
T ss_dssp CSSCCCEEEC-------CCCSSCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCC
T ss_pred CCCeeeeccc-------cccccccEEECCCCCCccc------HHHcCCCCccEEECCCCcCCC----cChhHccccccCC
Confidence 7777764321 1246788888888888753 356677888888888888874 2355666788888
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l 702 (999)
.|+|++|.++.. ...+..+++|+.|+|++|+++. ++..+..+++|+.|+|++|.|+... +..+
T Consensus 276 ~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~~-------~~~~ 338 (390)
T 3o6n_A 276 RLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK-------LSTH 338 (390)
T ss_dssp EEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC-------CCTT
T ss_pred EEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCccceeC-------chhh
Confidence 888888888642 2333456888888888888874 2333456778888888888887642 5667
Q ss_pred CCCCEEeCCCCCCC
Q psy18075 703 GMAAALVLEDDEGE 716 (999)
Q Consensus 703 ~~L~~L~Ls~N~~e 716 (999)
++|+.|++++|...
T Consensus 339 ~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 339 HTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCSEEECCSSCEE
T ss_pred ccCCEEEcCCCCcc
Confidence 88888888887654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=194.14 Aligned_cols=309 Identities=15% Similarity=0.170 Sum_probs=206.5
Q ss_pred ccCCccccCCCCChh-----hHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCCh
Q psy18075 344 NHKGRMTDKPNDDVS-----DILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~-----~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~ 418 (999)
..+++.+++...... .+..+.... . .++.|++.+|.+. .++..+..+++|++|+++++....
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~----~L~~L~L~~~~~~--------~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNC-R----SLVSVKVGDFEIL--------ELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHC-T----TCCEEECSSCBGG--------GGHHHHHHCTTCCEEEECBCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhC-C----CCcEEeccCccHH--------HHHHHHhhhhHHHhhccccccccc
Confidence 445555555544443 333333322 2 6889999998872 255778889999999998532221
Q ss_pred h----------------------HHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecC
Q psy18075 419 N----------------------AAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSD 476 (999)
Q Consensus 419 ~----------------------~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~ 476 (999)
. ....+...+...++|+.+ ++..+.+. ...+ ..++..+++|++|+|+
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L---~Ls~~~l~---~~~~----~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL---DLLYALLE---TEDH----CTLIQKCPNLEVLETR- 326 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE---EETTCCCC---HHHH----HHHHTTCTTCCEEEEE-
T ss_pred chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE---ecCCCcCC---HHHH----HHHHHhCcCCCEEecc-
Confidence 0 001111112222333221 11111111 0111 1234568899999999
Q ss_pred CCCCCccHHHHHHHHhccCCCCccEEEccC-----------CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 477 NAFGPIGVEGLADLLRSSCCFALEELKLNN-----------NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 477 N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~-----------n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+.+++.++..+... |++|++|+|++ +.++..+...++.. + ++|++|+++.|
T Consensus 327 ~~~~~~~l~~~~~~-----~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---~----------~~L~~L~l~~~ 388 (592)
T 3ogk_B 327 NVIGDRGLEVLAQY-----CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---C----------QELEYMAVYVS 388 (592)
T ss_dssp GGGHHHHHHHHHHH-----CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH---C----------TTCSEEEEEES
T ss_pred CccCHHHHHHHHHh-----CCCCCEEEeecCccccccccccCccCHHHHHHHHhh---C----------ccCeEEEeecC
Confidence 67777776666543 57999999994 57877766665443 2 45999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccC----CCccCch----hhhhhhHHhhhcccCceeeccCC--CCCcCCcccccccc
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMP----QNGIYHV----GITALSDAFEENKNLRHLNLNDN--TITYKGAIPLGQAL 615 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs----~N~It~~----g~~~La~aL~~~~~Lr~LdLS~N--~Lsd~G~~~L~~aL 615 (999)
++++.+...++. .+++|++|+|+ .|.+++. |+. ..+..+++|+.|+|++| .+++.+...++.
T Consensus 389 ~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~-- 460 (592)
T 3ogk_B 389 DITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVR---SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-- 460 (592)
T ss_dssp CCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--
T ss_pred CccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHH---HHHHhCCCCCEEEEecCCCCccHHHHHHHHH--
Confidence 999887766554 37899999996 6778863 443 44566899999999864 477766655543
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 695 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L 695 (999)
.+++|+.|+|++|.+++.+. ...+..+++|++|+|++|.|++.+... .+..+++|++|+|++|++++.|+..+
T Consensus 461 -~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 461 -YSPNVRWMLLGYVGESDEGL---MEFSRGCPNLQKLEMRGCCFSERAIAA---AVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp -SCTTCCEEEECSCCSSHHHH---HHHHTCCTTCCEEEEESCCCBHHHHHH---HHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred -hCccceEeeccCCCCCHHHH---HHHHhcCcccCeeeccCCCCcHHHHHH---HHHhcCccCeeECcCCcCCHHHHHHH
Confidence 57889999999999987664 444567799999999999997765444 34568999999999999999887766
Q ss_pred HHHHhcCCCCCEEeCCC
Q psy18075 696 EKLMKSFGMAAALVLED 712 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~ 712 (999)
+ ..++.+....+..
T Consensus 534 ~---~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 Q---MARPYWNIELIPS 547 (592)
T ss_dssp G---GCCTTEEEEEECC
T ss_pred H---HhCCCcEEEEecC
Confidence 4 3467776665544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=188.86 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=170.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC--CChhHHHHHHHHHhhChhhHHHhhhhcccCCCcccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT--LGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEI 451 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~--L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~i 451 (999)
.++.|++.+|.. ...+...+..+++|+.|+++++. +.......+...+..+++|+.+. .+.. ..
T Consensus 212 ~L~~L~L~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls---~~~~----~~ 277 (594)
T 2p1m_B 212 NLKSLKLNRAVP-------LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS---GFWD----AV 277 (594)
T ss_dssp TCCEEECCTTSC-------HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE---CCBT----CC
T ss_pred CCcEEecCCCCc-------HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc---CCcc----cc
Confidence 466666666521 12255556666666666666553 44444444444555444443210 0111 11
Q ss_pred chHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 452 PDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 452 p~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
...+.. +...+++|++|+|++|.+++.++..+ + ..|++|++|+|++| +++.+...++.. +
T Consensus 278 ~~~l~~----~~~~~~~L~~L~L~~~~l~~~~l~~~---~--~~~~~L~~L~l~~~-~~~~~l~~l~~~---~------- 337 (594)
T 2p1m_B 278 PAYLPA----VYSVCSRLTTLNLSYATVQSYDLVKL---L--CQCPKLQRLWVLDY-IEDAGLEVLAST---C------- 337 (594)
T ss_dssp GGGGGG----GHHHHTTCCEEECTTCCCCHHHHHHH---H--TTCTTCCEEEEEGG-GHHHHHHHHHHH---C-------
T ss_pred hhhHHH----HHHhhCCCCEEEccCCCCCHHHHHHH---H--hcCCCcCEEeCcCc-cCHHHHHHHHHh---C-------
Confidence 111111 11235789999999999876654433 2 24678999999988 666555555443 2
Q ss_pred CCCCCccEEEc---------cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeecc--C
Q psy18075 532 GSPLALKVFIA---------GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--D 600 (999)
Q Consensus 532 g~~~sLk~L~L---------s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS--~ 600 (999)
++|+.|++ +.+.+++.++..++. .+++|++|.+.+|.+++.++..++. .+++|+.|+|+ +
T Consensus 338 ---~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 338 ---KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIE 408 (594)
T ss_dssp ---TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESS
T ss_pred ---CCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeeccc
Confidence 34888887 345677776665543 3677888877777887766554443 36778888887 3
Q ss_pred ----CCCC----cCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhc
Q psy18075 601 ----NTIT----YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 672 (999)
Q Consensus 601 ----N~Ls----d~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~ 672 (999)
|.++ +.|+..+ +..+++|+.|+|++ .+++.++..++. .+++|+.|+|++|.+++.|...++ .
T Consensus 409 ~~~~~~l~~~~~~~~~~~l---~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~ 478 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAI---VEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---S 478 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHH---HHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---H
T ss_pred CCCcccccCCchhhHHHHH---HhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---h
Confidence 5555 3333322 34566777777766 666666555554 246777777777777766554443 3
Q ss_pred cCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 673 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 673 ~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.+++|+.|+|++|.+++.+... .+..+++|+.|+++++..
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLA---NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHH---TGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCCcHHHHHH---HHHhCCCCCEEeeeCCCC
Confidence 4677777777777776654332 334566777777777654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-18 Score=172.86 Aligned_cols=138 Identities=22% Similarity=0.179 Sum_probs=99.1
Q ss_pred CccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 536 ALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 536 sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
+|++|+|++| .|++.|+..++.++..+++|++|+|++|.|++.|+..|+.++..+++|++|+|++|.|++.|+..++.+
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3677777776 677777777777776667777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCCCcEEEc--CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCC
Q psy18075 615 LSKLPSLAILNL--GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 675 (999)
Q Consensus 615 L~~l~sL~~LdL--s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~ 675 (999)
+..+++|++|+| ++|.|++.|+..|+.++..+++|++|+|++|.|++.|+ ++.++..+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 777777777777 66777777777777777777778888888777776653 555555443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-19 Score=195.59 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=183.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccC-CCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG-NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~-N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
+++.|+++++.+.- ...++..+..+++|++|+|++ |.+.. .+|
T Consensus 51 ~l~~L~L~~~~l~~-----~~~~~~~l~~l~~L~~L~L~~~n~l~~-------------------------------~~p 94 (313)
T 1ogq_A 51 RVNNLDLSGLNLPK-----PYPIPSSLANLPYLNFLYIGGINNLVG-------------------------------PIP 94 (313)
T ss_dssp CEEEEEEECCCCSS-----CEECCGGGGGCTTCSEEEEEEETTEES-------------------------------CCC
T ss_pred eEEEEECCCCCccC-----CcccChhHhCCCCCCeeeCCCCCcccc-------------------------------cCC
Confidence 68899999998831 002345688899999999995 76543 123
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+. .+++|++|+|++|.++......+. .+++|++|+|++|.|+..... .+.
T Consensus 95 ~~l~--------~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~Ls~N~l~~~~p~----~~~---------- 146 (313)
T 1ogq_A 95 PAIA--------KLTQLHYLYITHTNVSGAIPDFLS------QIKTLVTLDFSYNALSGTLPP----SIS---------- 146 (313)
T ss_dssp GGGG--------GCTTCSEEEEEEECCEEECCGGGG------GCTTCCEEECCSSEEESCCCG----GGG----------
T ss_pred hhHh--------cCCCCCEEECcCCeeCCcCCHHHh------CCCCCCEEeCCCCccCCcCCh----HHh----------
Confidence 2222 356899999999999744433342 347999999999998732222 222
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcc-cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~-sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
..++|++|++++|+++.. ++..+..++ +|++|+|++|.++.. ++..+..++ |+.|+|++|.+.. .+
T Consensus 147 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~----~~ 213 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEG----DA 213 (313)
T ss_dssp GCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEE----CC
T ss_pred cCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccC----cC
Confidence 235699999999999743 334566676 999999999999854 445555565 9999999999875 35
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|+|++|.++... ..+...++|++|+|++|.|+.. ++..+..+++|++|+|++|.++..
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~- 283 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE- 283 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE-
T ss_pred CHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCccccc-
Confidence 667778999999999999987321 2266779999999999999752 456678899999999999998753
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
++.. ..+++|+.+++++|.
T Consensus 284 ---ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 ---IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---CCCS-TTGGGSCGGGTCSSS
T ss_pred ---CCCC-ccccccChHHhcCCC
Confidence 2222 567788888998886
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=183.94 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=173.0
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...+..+++|++|+|++|.+....... +..+++|+.+.. ..+++. .+|.
T Consensus 53 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L---s~n~l~-~l~~ 117 (330)
T 1xku_A 53 DTALLDLQNNKITEIK-------DGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYL---SKNQLK-ELPE 117 (330)
T ss_dssp TCCEEECCSSCCCCBC-------TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEEC---CSSCCS-BCCS
T ss_pred CCeEEECCCCcCCEeC-------hhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCCCCEEEC---CCCcCC-ccCh
Confidence 6778899998884321 124677889999999999887643332 233444433222 222222 2332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ .++|++|+|++|.++......+. .+++|+.|+|++|.++..+.. ...+..
T Consensus 118 ~~----------~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~--~~~~~~---------- 169 (330)
T 1xku_A 118 KM----------PKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTNPLKSSGIE--NGAFQG---------- 169 (330)
T ss_dssp SC----------CTTCCEEECCSSCCCBBCHHHHT------TCTTCCEEECCSSCCCGGGBC--TTGGGG----------
T ss_pred hh----------cccccEEECCCCcccccCHhHhc------CCccccEEECCCCcCCccCcC--hhhccC----------
Confidence 11 25788888888888776655552 346888888888887643221 112222
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
.++|+.|++++|+++.-. ..+ .++|++|+|++|.|+... +..+..+++|+.|+|++|.++.. ...
T Consensus 170 l~~L~~L~l~~n~l~~l~-----~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 234 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIP-----QGL--PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAV----DNG 234 (330)
T ss_dssp CTTCCEEECCSSCCCSCC-----SSC--CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEE----CTT
T ss_pred CCCcCEEECCCCccccCC-----ccc--cccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCcee----Chh
Confidence 356888888888877421 111 267888888888887642 34556678888888888888742 223
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh--ccCCCcCEEEccCCCCChhc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L--~~~~sL~~LdLs~N~Is~eg 691 (999)
.+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|+|+..+...+.... ...+.|+.|++.+|++...+
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred hccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 45567888888888888762 445566778888888888888876544432211 12467888888888876532
Q ss_pred HHHHHHHHhcCCCCCEEeCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
. .+..+..+..++.+++++|
T Consensus 310 i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 I--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S--CGGGGTTCCCGGGEEC---
T ss_pred c--CccccccccceeEEEeccc
Confidence 1 2345677788888888776
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-18 Score=204.05 Aligned_cols=283 Identities=18% Similarity=0.207 Sum_probs=191.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+. .++..+..+++|++|+|++|.+....... +..+++|+.+ ++..+.+...+|.
T Consensus 279 ~L~~L~l~~n~l~--------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L---~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 279 GLQELDLTATHLS--------ELPSGLVGLSTLKKLVLSANKFENLCQIS----ASNFPSLTHL---SIKGNTKRLELGT 343 (606)
T ss_dssp TCSEEECTTSCCS--------CCCSSCCSCTTCCEEECTTCCCSBGGGGC----GGGCTTCSEE---ECCSCSSCCBCCS
T ss_pred CCCEEeccCCccC--------CCChhhcccccCCEEECccCCcCcCchhh----hhccCcCCEE---ECCCCCcccccch
Confidence 5777888888773 23344667788888888888877543322 2334444332 2222222223332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCcc--HHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIG--VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~g--v~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
. .+..+++|++|+|++|.+.... ...+ ..+++|++|+|++|.++...... +
T Consensus 344 ~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~--------------~ 396 (606)
T 3t6q_A 344 G-------CLENLENLRELDLSHDDIETSDCCNLQL------RNLSHLQSLNLSYNEPLSLKTEA--------------F 396 (606)
T ss_dssp S-------TTTTCTTCCEEECCSSCCCEEEESTTTT------TTCTTCCEEECCSCSCEEECTTT--------------T
T ss_pred h-------hhhccCcCCEEECCCCccccccCcchhc------ccCCCCCEEECCCCcCCcCCHHH--------------h
Confidence 1 1234678899999999886554 2222 23568999999998876332211 2
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|+.|++++|++..... ...+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+.+... ..
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 468 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDIS----SEQLFDGLPALQHLNLQGNHFPKGNI-QK 468 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTT----CTTTTTTCTTCCEEECTTCBCGGGEE-CS
T ss_pred cCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCc----CHHHHhCCCCCCEEECCCCCCCcccc-cc
Confidence 234679999999998764321 12356688999999999998764 34456678899999999998874221 12
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
...+..+++|+.|++++|.++... +..+..+++|+.|+|++|+++.. .+..+..++.| +|+|++|.++..
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L-~L~L~~N~l~~~- 538 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVDLSHNRLTSS----SIEALSHLKGI-YLNLASNHISII- 538 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCGG----GGGGGTTCCSC-EEECCSSCCCCC-
T ss_pred chhhccCCCccEEECCCCccCccC----hhhhccccCCCEEECCCCccCcC----ChhHhCccccc-EEECcCCccccc-
Confidence 245677889999999999987543 35667789999999999999873 35567788899 999999999863
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
.+..+..+++|+.|++++|....+.
T Consensus 539 ---~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 539 ---LPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ---CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ---CHhhcccCCCCCEEeCCCCCccccC
Confidence 2344566788999999998776543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=186.97 Aligned_cols=259 Identities=17% Similarity=0.164 Sum_probs=135.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...+..+++|++|+|++|.|.......+ .
T Consensus 53 ~L~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~------------------------ 97 (353)
T 2z80_A 53 AVKSLDLSNNRITYIS-------NSDLQRCVNLQALVLTSNGINTIEEDSF----S------------------------ 97 (353)
T ss_dssp TCCEEECTTSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTTT----T------------------------
T ss_pred cCcEEECCCCcCcccC-------HHHhccCCCCCEEECCCCccCccCHhhc----C------------------------
Confidence 6788999998884221 1246778899999999998875221111 1
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+++|++|+|++|.|+......+ ..+++|++|+|++|.++..... ..++.
T Consensus 98 -----------~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~l~~~-------------~~~~~ 147 (353)
T 2z80_A 98 -----------SLGSLEHLDLSYNYLSNLSSSWF------KPLSSLTFLNLLGNPYKTLGET-------------SLFSH 147 (353)
T ss_dssp -----------TCTTCCEEECCSSCCSSCCHHHH------TTCTTCSEEECTTCCCSSSCSS-------------CSCTT
T ss_pred -----------CCCCCCEEECCCCcCCcCCHhHh------CCCccCCEEECCCCCCcccCch-------------hhhcc
Confidence 23456666666666655444333 1234666666666665421110 01122
Q ss_pred CCCccEEEccCCC-CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|++|++++|+ ++... ...+..+++|++|++++|.++.. .+..+..+++|++|+|++|.++. ++
T Consensus 148 l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~-----~~ 214 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQ----RKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHIL-----LL 214 (353)
T ss_dssp CTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTT-----HH
T ss_pred CCCCcEEECCCCccccccC----HHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcccc-----ch
Confidence 3446666666652 43221 12234455666666666665543 23344445566666666665542 22
Q ss_pred c-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 613 Q-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 613 ~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
. .+..+++|+.|++++|.++......+.. ...+..++.++|+++.+++.+...++..+..+++|+.|+|++|.|+.
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-- 291 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-- 291 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC--
T ss_pred hhhhhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc--
Confidence 1 1223455666666666655443322222 12335555666666666655555555555666666666666666553
Q ss_pred HHHHHHH-HhcCCCCCEEeCCCCCCC
Q psy18075 692 VEEMEKL-MKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 692 ~~~L~~~-L~~l~~L~~L~Ls~N~~e 716 (999)
++.. +..+++|+.|++++|.-.
T Consensus 292 ---i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 ---VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---cCHHHHhcCCCCCEEEeeCCCcc
Confidence 2222 345566666666665443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=194.17 Aligned_cols=276 Identities=20% Similarity=0.234 Sum_probs=141.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...|..+++|++|+|++|.|....... +..+++|+.+ ++..+++. .+|.
T Consensus 33 ~l~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~-~~~~ 97 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLN-------QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTL---GLRSNRLK-LIPL 97 (477)
T ss_dssp TCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEE---ECCSSCCC-SCCT
T ss_pred CCcEEECCCCccceEC-------HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEE---ECCCCcCC-ccCc
Confidence 4566667766663211 223556666777777777665533222 2233343322 11112221 1121
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
..+..+++|++|+|++|.+.......+ ..+++|++|+|++|.++...... ++.
T Consensus 98 -------~~~~~l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~--------------~~~ 150 (477)
T 2id5_A 98 -------GVFTGLSNLTKLDISENKIVILLDYMF------QDLYNLKSLEVGDNDLVYISHRA--------------FSG 150 (477)
T ss_dssp -------TSSTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEEECCTTCCEECTTS--------------STT
T ss_pred -------ccccCCCCCCEEECCCCccccCChhHc------cccccCCEEECCCCccceeChhh--------------ccC
Confidence 112234567777777777654433333 23456777777777665322211 222
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeecc--------------
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN-------------- 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS-------------- 599 (999)
+++|+.|+|++|+++... ...+..+++|+.|+|++|.++.... ..+..+++|+.|+|+
T Consensus 151 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIP----TEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp CTTCCEEEEESCCCSSCC----HHHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred CCCCCEEECCCCcCcccC----hhHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCccccc
Confidence 345777777777666432 2334556666666666666654321 223334445555554
Q ss_pred ----------CCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHH
Q psy18075 600 ----------DNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668 (999)
Q Consensus 600 ----------~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~ 668 (999)
+|.++. ++ ..+..+++|+.|+|++|.++... ...+..+++|+.|+|++|.|+... .
T Consensus 223 ~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~ 289 (477)
T 2id5_A 223 GLNLTSLSITHCNLTA-----VPYLAVRHLVYLRFLNLSYNPISTIE----GSMLHELLRLQEIQLVGGQLAVVE----P 289 (477)
T ss_dssp TCCCSEEEEESSCCCS-----CCHHHHTTCTTCCEEECCSSCCCEEC----TTSCTTCTTCCEEECCSSCCSEEC----T
T ss_pred CccccEEECcCCcccc-----cCHHHhcCccccCeeECCCCcCCccC----hhhccccccCCEEECCCCccceEC----H
Confidence 444442 22 23445566666666666665332 233445566666666666665421 2
Q ss_pred HhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 669 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 669 ~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
..+..+++|+.|+|++|.|+... ...+..+++|+.|++++|.-.
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEE
T ss_pred HHhcCcccCCEEECCCCcCceeC----HhHcCCCcccCEEEccCCCcc
Confidence 34556666777777777665521 123455566777777766543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-18 Score=198.12 Aligned_cols=185 Identities=18% Similarity=0.117 Sum_probs=125.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.++......+ ..+++|+.|+|++|.++.... ..++...+|+.|++++|
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l------~~l~~L~~L~l~~n~i~~~~~--------------~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEAL------SHLHGLIVLRLRHLNINAIRD--------------YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHH------TTCTTCCEEEEESCCCCEECT--------------TCSCSCTTCCEEEEECC
T ss_pred CCCCCEEECCCCcCcccChhHh------cccCCCcEEeCCCCcCcEeCh--------------hhcccCcccceeeCCCC
Confidence 3455555555555554443333 123455566665555542211 12334466888888877
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
.+.... +..+....+|++|+|++|.|+... ...+..+++|+.|+|++|.+... ....+..+++|+.|+
T Consensus 211 ~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 211 PYLDTM----TPNCLYGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLSYNPISTI----EGSMLHELLRLQEIQ 278 (477)
T ss_dssp TTCCEE----CTTTTTTCCCSEEEEESSCCCSCC----HHHHTTCTTCCEEECCSSCCCEE----CTTSCTTCTTCCEEE
T ss_pred cccccc----CcccccCccccEEECcCCcccccC----HHHhcCccccCeeECCCCcCCcc----ChhhccccccCCEEE
Confidence 654321 112223458899999999888542 24577789999999999999852 234567789999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|++|.++... +.++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++..+
T Consensus 279 L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 279 LVGGQLAVVE----PYAFRGLNYLRVLNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCSSCCSEEC----TTTBTTCTTCCEEECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCCccceEC----HHHhcCcccCCEEECCCCcCceeC----HhHcCCCcccCEEEccCCCccCc
Confidence 9999998543 456778899999999999998743 23456789999999999998654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=198.20 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=124.5
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhc---cCCcCCCCCCCccEEEc
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY---ESSKKEGSPLALKVFIA 542 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~---~~s~~~g~~~sLk~L~L 542 (999)
+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+......+... .... +.....+.+.+|+.|++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTT------TTCTTCCEEECTTSCCSBCCGGGCTTC-SEEECCSSCCSEEECCTTCSEEEC
T ss_pred CCCCCEEEeeCCcCCCCChhhh------hcCCcCcEEECcCCCCCCcChhhhhhh-hhhhcccCccccccCCchhheeec
Confidence 4556666666666554433222 123456666666665554332221110 0000 00001123455777777
Q ss_pred cCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc
Q psy18075 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 543 s~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~ 622 (999)
++|.+..... ...++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.. ..+..+..+++|+
T Consensus 219 s~n~l~~~~~-------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~ 281 (597)
T 3oja_B 219 SHNSINVVRG-------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLE 281 (597)
T ss_dssp CSSCCCEEEC-------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCC
T ss_pred cCCccccccc-------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEECCCCccCC----CCHHHhcCccCCC
Confidence 7777653221 1135777888888877753 445667888888888888774 2345666778888
Q ss_pred EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcC
Q psy18075 623 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 702 (999)
Q Consensus 623 ~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l 702 (999)
.|+|++|.++.. +..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.|+... +..+
T Consensus 282 ~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~ 344 (597)
T 3oja_B 282 RLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK-------LSTH 344 (597)
T ss_dssp EEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC-------CCTT
T ss_pred EEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCcC-------hhhc
Confidence 888888887642 3334456788888888888774 3334456778888888888876632 5667
Q ss_pred CCCCEEeCCCCCCC
Q psy18075 703 GMAAALVLEDDEGE 716 (999)
Q Consensus 703 ~~L~~L~Ls~N~~e 716 (999)
+.|+.|++++|...
T Consensus 345 ~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 345 HTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCSEEECCSSCEE
T ss_pred CCCCEEEeeCCCCC
Confidence 78888888887643
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=177.69 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=181.0
Q ss_pred CCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 373 QDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 373 ~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
|.++.++++++++.... .. -.+.|+.|+|++|.|+.....
T Consensus 31 c~l~~l~~~~~~l~~lp--------~~--~~~~l~~L~L~~n~i~~~~~~------------------------------ 70 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP--------KD--LPPDTALLDLQNNKITEIKDG------------------------------ 70 (330)
T ss_dssp EETTEEECTTSCCCSCC--------CS--CCTTCCEEECCSSCCCCBCTT------------------------------
T ss_pred CCCeEEEecCCCccccC--------cc--CCCCCeEEECCCCcCCEeChh------------------------------
Confidence 35667888888774221 11 136799999999998752111
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
.+..+++|++|+|++|.++......+. .+++|++|+|++|.|+.....
T Consensus 71 ---------~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~l~~~----------------- 118 (330)
T 1xku_A 71 ---------DFKNLKNLHTLILINNKISKISPGAFA------PLVKLERLYLSKNQLKELPEK----------------- 118 (330)
T ss_dssp ---------TTTTCTTCCEEECCSSCCCCBCTTTTT------TCTTCCEEECCSSCCSBCCSS-----------------
T ss_pred ---------hhccCCCCCEEECCCCcCCeeCHHHhc------CCCCCCEEECCCCcCCccChh-----------------
Confidence 012356899999999999876544442 357899999999988632211
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
...+|++|++++|+++... ...+..+++|+.|+|++|.++..+. ....+..+++|+.|++++|.++. ++
T Consensus 119 ~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~ 187 (330)
T 1xku_A 119 MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITT-----IP 187 (330)
T ss_dssp CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCS-----CC
T ss_pred hcccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCcccc-----CC
Confidence 1246999999999988643 3456778999999999999976443 34567788999999999998873 44
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
..+. ++|++|++++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|++|+|++|.++.
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~--- 254 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVK--- 254 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS---
T ss_pred cccc--ccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCceeC----hhhccCCCCCCEEECCCCcCcc---
Confidence 4332 78999999999987553 355677899999999999988643 2356678999999999999884
Q ss_pred HHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
++..+..+++|+.|++++|.-..
T Consensus 255 --lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 255 --VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp --CCTTTTTCSSCCEEECCSSCCCC
T ss_pred --CChhhccCCCcCEEECCCCcCCc
Confidence 55567888999999999887643
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=182.09 Aligned_cols=242 Identities=15% Similarity=0.119 Sum_probs=169.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..+.+.++.+ ++..+..+...+.. ++|++|+|++|.+.......+.
T Consensus 65 ~l~~l~l~~~~~---~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~---------------------------- 112 (310)
T 4glp_A 65 RVRRLTVGAAQV---PAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPL---------------------------- 112 (310)
T ss_dssp CCCEEEECSCCC---BHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSS----------------------------
T ss_pred ceeEEEEeCCcC---CHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhh----------------------------
Confidence 567888998888 66677777665543 5699999999988642111000
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
....++|++|+|++|.++......-...+ ..+++|++|+|++|+|+..... .++.
T Consensus 113 ---------~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~--------------~~~~ 167 (310)
T 4glp_A 113 ---------EATGLALSSLRLRNVSWATGRSWLAELQQ--WLKPGLKVLSIAQAHSPAFSCE--------------QVRA 167 (310)
T ss_dssp ---------SCCCBCCSSCEEESCCCSSTTSSHHHHHT--TBCSCCCEEEEECCSSCCCCTT--------------SCCC
T ss_pred ---------hccCCCCCEEEeecccccchhhhhHHHHh--hhccCCCEEEeeCCCcchhhHH--------------Hhcc
Confidence 02356899999999999763321111111 2467999999999998643322 2234
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHH-hhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~a-L~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
+++|++|+|++|++...........+..+++|++|+|++|+|+..+ .++.. +..+++|++|+|++|.+++.. +
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSLRATV----N 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCCCCCC----C
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCCCccc----h
Confidence 5779999999999864322211222356889999999999997432 23333 467899999999999998632 3
Q ss_pred ccccCC---CCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 613 QALSKL---PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 613 ~aL~~l---~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+ ++|++|+|++|.|+. ++..+. ++|+.|+|++|+|+.-. .+..+++|+.|+|++|+|++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCCCCCC
Confidence 333334 699999999999973 233332 79999999999998631 24678999999999999987
Q ss_pred hc
Q psy18075 690 EG 691 (999)
Q Consensus 690 eg 691 (999)
.|
T Consensus 309 ~g 310 (310)
T 4glp_A 309 PG 310 (310)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=173.32 Aligned_cols=194 Identities=17% Similarity=0.197 Sum_probs=128.2
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.+++.++..+ + ..|++|++|+|++|.++......+ ..+ ++|++|++++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~---~--~~~~~L~~L~L~~~~l~~~~~~~l----~~~----------~~L~~L~L~~~ 152 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGI---L--SQCSKLQNLSLEGLRLSDPIVNTL----AKN----------SNLVRLNLSGC 152 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHH---H--TTBCCCSEEECTTCBCCHHHHHHH----TTC----------TTCSEEECTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHH---H--hhCCCCCEEeCcCcccCHHHHHHH----hcC----------CCCCEEECCCC
Confidence 4578888888887765544333 2 235688888888887764443333 222 45888888888
Q ss_pred -CCCchhHHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcc-cCceeeccCC--CCCcCCcccccccccCCCC
Q psy18075 546 -RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENK-NLRHLNLNDN--TITYKGAIPLGQALSKLPS 620 (999)
Q Consensus 546 -~L~d~g~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~-~Lr~LdLS~N--~Lsd~G~~~L~~aL~~l~s 620 (999)
.+++.++ ...+..+++|++|+|++| .+++.+ +...+..++ +|++|+|++| .+++.+ +...+..+++
T Consensus 153 ~~l~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~ 223 (336)
T 2ast_B 153 SGFSEFAL---QTLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPN 223 (336)
T ss_dssp BSCCHHHH---HHHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTT
T ss_pred CCCCHHHH---HHHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCC
Confidence 5776543 344556778888888888 787654 344555677 8888888888 455432 3344556778
Q ss_pred CcEEEcCCCC-CCccchHHHHHhccCCCCCCEEEccCC-CCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 621 LAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 621 L~~LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
|+.|++++|. +++.+.. .+..+++|++|+|++| .+.+.+. ..+..+++|+.|++++| ++++++..+.
T Consensus 224 L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~~~l~ 292 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTLQLLK 292 (336)
T ss_dssp CSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCHHHHH
T ss_pred CCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHHHHHH
Confidence 8888888887 6655543 4455688888888888 4555443 33456788888888888 7777766655
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-16 Score=184.18 Aligned_cols=303 Identities=17% Similarity=0.158 Sum_probs=157.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCC-CCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGN-TLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N-~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|+++++.+ ++.....+. ..+++|++|+|++| .+++.+...+... +++|+.+... .+.+....+
T Consensus 106 ~L~~L~L~~~~~---~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~L~~L~L~---~~~i~~~~~ 173 (594)
T 2p1m_B 106 WLEEIRLKRMVV---TDDCLELIA---KSFKNFKVLVLSSCEGFSTDGLAAIAAT---CRNLKELDLR---ESDVDDVSG 173 (594)
T ss_dssp TCCEEEEESCBC---CHHHHHHHH---HHCTTCCEEEEESCEEEEHHHHHHHHHH---CTTCCEEECT---TCEEECCCG
T ss_pred CCCeEEeeCcEE---cHHHHHHHH---HhCCCCcEEeCCCcCCCCHHHHHHHHHh---CCCCCEEeCc---CCccCCcch
Confidence 577788888776 555444433 24678888888877 6666655555543 3344322211 111111112
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccC---------------------
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLG--------------------- 510 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt--------------------- 510 (999)
..+.. +...+++|+.|+|++|. +......+..+... |++|++|+|++| .++
T Consensus 174 ~~l~~----~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~--~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 174 HWLSH----FPDTYTSLVSLNISCLA-SEVSFSALERLVTR--CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp GGGGG----SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHH--CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred HHHHH----HhhcCCcCcEEEecccC-CcCCHHHHHHHHHh--CCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 22211 22245567777777765 22222223332221 456777777666 111
Q ss_pred ----chhhhHHHHHHhhhccCCc--------------CCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCC
Q psy18075 511 ----ITGCKLLSKALHDCYESSK--------------KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 572 (999)
Q Consensus 511 ----~~g~~~La~~L~~~~~~s~--------------~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~ 572 (999)
......+...+..++.... ....+++|++|++++|.+++.+.. ..+..+++|++|+|++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~---~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV---KLLCQCPKLQRLWVLD 323 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHH---HHHTTCTTCCEEEEEG
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHH---HHHhcCCCcCEEeCcC
Confidence 1111111112222111000 000235688888888887765433 3344456666666665
Q ss_pred CccCchhhhhhhHHhhhcccCceeec----------------------------------cCCCCCcCCcccccccccCC
Q psy18075 573 NGIYHVGITALSDAFEENKNLRHLNL----------------------------------NDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 573 N~It~~g~~~La~aL~~~~~Lr~LdL----------------------------------S~N~Lsd~G~~~L~~aL~~l 618 (999)
| +++.++..++. .+++|+.|+| +.|.+++.++..++. .+
T Consensus 324 ~-~~~~~l~~l~~---~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~ 396 (594)
T 2p1m_B 324 Y-IEDAGLEVLAS---TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR---NR 396 (594)
T ss_dssp G-GHHHHHHHHHH---HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH---HC
T ss_pred c-cCHHHHHHHHH---hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh---hC
Confidence 5 44444333322 2444555554 444444333222221 35
Q ss_pred CCCcEEEcC--C----CCCC----ccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 619 PSLAILNLG--D----CLLK----SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 619 ~sL~~LdLs--~----N~L~----d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
++|+.|+++ + +.++ +.|+ ...+..+++|+.|+|++ .+++.+...++. .+++|+.|+|++|.++
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~---~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGF---GAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDS 469 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHH---HHHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSS
T ss_pred CCcceeEeecccCCCcccccCCchhhHH---HHHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCc
Confidence 566677666 3 4455 2332 23344456777777766 666655444433 3778999999999998
Q ss_pred hhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 689 EEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 689 ~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+.|...+. ..+++|+.|++++|..
T Consensus 470 ~~~~~~l~---~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 470 DLGMHHVL---SGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCSC
T ss_pred HHHHHHHH---hcCCCcCEEECcCCCC
Confidence 87766553 4588999999999875
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=173.27 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=48.0
Q ss_pred ccEEEccCC-CCCchhHHHHHHHHhhcc-cccccccCCC--ccCchhhhhhhHHhhhcccCceeeccCCC-CCcCCcccc
Q psy18075 537 LKVFIAGRN-RLENEGAKMLAAVFKKLK-TLERVEMPQN--GIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPL 611 (999)
Q Consensus 537 Lk~L~Ls~N-~L~d~g~~~L~~~L~~~~-sLe~LdLs~N--~It~~g~~~La~aL~~~~~Lr~LdLS~N~-Lsd~G~~~L 611 (999)
|++|++++| .+++.++ ...+..++ +|++|+|++| .+++.+ ++..+..+++|+.|+|++|. +++.+..
T Consensus 170 L~~L~l~~~~~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~-- 241 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHV---QVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQ-- 241 (336)
T ss_dssp CCEEECCCCTTCCHHHH---HHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGG--
T ss_pred CCEEcCCCCCCcChHHH---HHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHH--
Confidence 555555555 4443322 22233344 5555555555 333322 22333344555555555554 3333222
Q ss_pred cccccCCCCCcEEEcCCC-CCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 612 GQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N-~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
.+..+++|+.|++++| .+.+.+. ..+..+++|+.|+|++| +++.+.
T Consensus 242 --~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 242 --EFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp --GGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCH
T ss_pred --HHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHH
Confidence 2223445555555555 2333322 12233455555555555 444433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=180.51 Aligned_cols=190 Identities=23% Similarity=0.264 Sum_probs=100.9
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.+..... + ..+++|++|++++|.++.... +. .+++|+.|++++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--l------~~l~~L~~L~l~~n~l~~~~~------~~----------~l~~L~~L~l~~ 230 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV--L------AKLTNLESLIATNNQISDITP------LG----------ILTNLDELSLNG 230 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--G------GGCTTCSEEECCSSCCCCCGG------GG----------GCTTCCEEECCS
T ss_pred cCCCCCEEECcCCcCCCChh--h------ccCCCCCEEEecCCccccccc------cc----------ccCCCCEEECCC
Confidence 45678888888887765431 1 234677778887777753321 11 123466666666
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|++...+ .+..+++|+.|++++|.++... .+..+++|+.|+|++|.+... .. +..+++|+.|
T Consensus 231 n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L 292 (466)
T 1o6v_A 231 NQLKDIG------TLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQISNI-----SP-LAGLTALTNL 292 (466)
T ss_dssp SCCCCCG------GGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEE
T ss_pred CCcccch------hhhcCCCCCEEECCCCccccch------hhhcCCCCCEEECCCCccCcc-----cc-ccCCCccCeE
Confidence 6665431 2444566666666666665421 144555666666666655531 11 3445555666
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
++++|.+++... +..+++|+.|+|++|++++... +..+++|+.|++++|.++.. ..+..+++
T Consensus 293 ~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~ 354 (466)
T 1o6v_A 293 ELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SSLANLTN 354 (466)
T ss_dssp ECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GGGTTCTT
T ss_pred EcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hhhccCCC
Confidence 665555543211 3344555555555555554221 34455555555555555442 23444555
Q ss_pred CCEEeCCCCC
Q psy18075 705 AAALVLEDDE 714 (999)
Q Consensus 705 L~~L~Ls~N~ 714 (999)
|+.|++++|.
T Consensus 355 L~~L~l~~n~ 364 (466)
T 1o6v_A 355 INWLSAGHNQ 364 (466)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 5555555543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=185.00 Aligned_cols=272 Identities=17% Similarity=0.154 Sum_probs=168.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.+++.++.+.... ...+..+++|++|+|++|.+....... +..+++|+.+ ++..+++....|.
T Consensus 46 ~l~~l~l~~~~l~~l~-------~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLP-------AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKL---YMGFNAIRYLPPH 111 (390)
T ss_dssp CCSEEEEESCEESEEC-------THHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEE---ECCSSCCCCCCTT
T ss_pred CceEEEecCCchhhCC-------hhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEE---ECCCCCCCcCCHH
Confidence 5677888888773211 123567788899999888887643322 2234444332 2222333333232
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.++......+ ..+++|++|+|++|.++...... ++.
T Consensus 112 ~~--------~~l~~L~~L~L~~n~l~~l~~~~~------~~l~~L~~L~L~~n~l~~~~~~~--------------~~~ 163 (390)
T 3o6n_A 112 VF--------QNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTTLSMSNNNLERIEDDT--------------FQA 163 (390)
T ss_dssp TT--------TTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSCCCBCCTTT--------------TSS
T ss_pred Hh--------cCCCCCCEEECCCCccCcCCHHHh------cCCCCCcEEECCCCccCccChhh--------------ccC
Confidence 22 345789999999999976554333 23468999999999886432211 223
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhh--------------hhhHHhhhcccCceeecc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--------------ALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~--------------~La~aL~~~~~Lr~LdLS 599 (999)
.++|++|++++|+++..+ +..+++|+.|++++|.++..+.. .++. ...++|+.|+|+
T Consensus 164 l~~L~~L~l~~n~l~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~ 234 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQ 234 (390)
T ss_dssp CTTCCEEECCSSCCSBCC-------GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECC
T ss_pred CCCCCEEECCCCcCCccc-------cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECC
Confidence 466888888888887643 23355565555555555432100 0000 113467777777
Q ss_pred CCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCE
Q psy18075 600 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679 (999)
Q Consensus 600 ~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~ 679 (999)
+|.+++. ..+..+++|++|++++|.++... +..+..+++|+.|+|++|.++.. ...+..+++|+.
T Consensus 235 ~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~ 299 (390)
T 3o6n_A 235 HNNLTDT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKV 299 (390)
T ss_dssp SSCCCCC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCE
T ss_pred CCCCccc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCccc-----CcccCCCCCCCE
Confidence 7777642 34556778888888888876432 34566678888888888887752 223356778888
Q ss_pred EEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 680 LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
|+|++|.++. +...+..+++|+.|++++|.-.
T Consensus 300 L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 300 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCC
T ss_pred EECCCCccee-----cCccccccCcCCEEECCCCccc
Confidence 8888888875 3334556778888888887653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-17 Score=178.08 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=144.6
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|++|+|++|.|+..+ .+++|++|++++|.|+..... ..++|+.|++++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~-----------~~~~L~~L~l~~n~l~~~~~~-----------------~~~~L~~L~l~~ 129 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL-----------VGPSIETLHAANNNISRVSCS-----------------RGQGKKNIYLAN 129 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE-----------ECTTCCEEECCSSCCSEEEEC-----------------CCSSCEEEECCS
T ss_pred hcCCCCEEECcCCcccccc-----------CCCCcCEEECCCCccCCcCcc-----------------ccCCCCEEECCC
Confidence 3568999999999886543 235899999999988743321 235699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|+++.... ..+..+++|++|+|++|.|+......+. ..+++|++|+|++|.++. +. ....+++|+.|
T Consensus 130 N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L 196 (317)
T 3o53_A 130 NKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTL 196 (317)
T ss_dssp SCCCSGGG----BCTGGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEE
T ss_pred CCCCCccc----hhhhccCCCCEEECCCCCCCcccHHHHh---hccCcCCEEECCCCcCcc-----cc-cccccccCCEE
Confidence 99986432 2455678999999999999875433332 356889999999999874 22 23347899999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... ..+..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|++... .+...+..++.
T Consensus 197 ~Ls~N~l~~l~-----~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~ 263 (317)
T 3o53_A 197 DLSSNKLAFMG-----PEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQR 263 (317)
T ss_dssp ECCSSCCCEEC-----GGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHH
T ss_pred ECCCCcCCcch-----hhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCc---CHHHHHhcccc
Confidence 99999997432 336667999999999999984 445677889999999999999732 46677788888
Q ss_pred CCEEeCCC
Q psy18075 705 AAALVLED 712 (999)
Q Consensus 705 L~~L~Ls~ 712 (999)
|+.+++.+
T Consensus 264 L~~l~l~~ 271 (317)
T 3o53_A 264 VQTVAKQT 271 (317)
T ss_dssp HHHHHHHH
T ss_pred ceEEECCC
Confidence 88887763
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-17 Score=200.99 Aligned_cols=287 Identities=14% Similarity=0.113 Sum_probs=156.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC-CCh-hHHHHHHHH--HhhChhhHHHhhhhcccCCCcc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT-LGV-NAAKAIADA--LSKHEHFKRALWKDMFTGRMKT 449 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~-L~~-~~~~~L~~~--L~~~~~Lk~ll~~nl~t~rl~~ 449 (999)
.++.|++++|.+.. .++..+..+++|++|+|++|. ++. ..+..++.. +..+++|+. .++..+++.
T Consensus 250 ~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~---L~L~~n~l~- 318 (636)
T 4eco_A 250 DLTDVEVYNCPNLT-------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI---IYIGYNNLK- 318 (636)
T ss_dssp TCCEEEEECCTTCS-------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE---EECCSSCCS-
T ss_pred CCCEEEecCCcCCc-------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE---EECCCCcCC-
Confidence 68889999998732 345667888999999999998 887 555555542 111233332 233344444
Q ss_pred ccch--HHHHhhhhhhccCCcccEEEecCCCCC-CccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhcc
Q psy18075 450 EIPD--ALRYLGNGLQQAGARLVELDLSDNAFG-PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 526 (999)
Q Consensus 450 ~ip~--~l~~L~~~L~~~~~sL~~LdLS~N~L~-~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~ 526 (999)
.+|. .+.. +++|+.|+|++|.+. ... .+ ..+++|++|+|++|.++. +...+..+..
T Consensus 319 ~ip~~~~l~~--------l~~L~~L~L~~N~l~g~ip--~~------~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~ 377 (636)
T 4eco_A 319 TFPVETSLQK--------MKKLGMLECLYNQLEGKLP--AF------GSEIKLASLNLAYNQITE-----IPANFCGFTE 377 (636)
T ss_dssp SCCCHHHHTT--------CTTCCEEECCSCCCEEECC--CC------EEEEEESEEECCSSEEEE-----CCTTSEEECT
T ss_pred ccCchhhhcc--------CCCCCEEeCcCCcCccchh--hh------CCCCCCCEEECCCCcccc-----ccHhhhhhcc
Confidence 5665 4433 457777888877775 332 22 122456666666665541 1111111100
Q ss_pred --------------CCcCCCCC--CCccEEEccCCCCCchhHHHHHHHHh-------hcccccccccCCCccCchhhhhh
Q psy18075 527 --------------SSKKEGSP--LALKVFIAGRNRLENEGAKMLAAVFK-------KLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 527 --------------~s~~~g~~--~sLk~L~Ls~N~L~d~g~~~L~~~L~-------~~~sLe~LdLs~N~It~~g~~~L 583 (999)
++..++.. .+|+.|++++|++..... ..+. .+++|+.|+|++|.|+. +
T Consensus 378 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----l 448 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG----KNFDPLDPTPFKGINVSSINLSNNQISK-----F 448 (636)
T ss_dssp TCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT----CSSCTTCSSCCCCCCEEEEECCSSCCCS-----C
T ss_pred cCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch----hhhcccccccccCCCCCEEECcCCccCc-----C
Confidence 01111111 256666666666654221 1222 34466667777776663 2
Q ss_pred hH-HhhhcccCceeeccCCCCCcCCcccccc---cccCCCCCcEEEcCCCCCCccchHHHHHhcc--CCCCCCEEEccCC
Q psy18075 584 SD-AFEENKNLRHLNLNDNTITYKGAIPLGQ---ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCN 657 (999)
Q Consensus 584 a~-aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~---aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~--~~~~L~~LdLs~N 657 (999)
+. .+..+++|+.|+|++|.++.-....+.. .+..+++|+.|+|++|.++. ++..+. .+++|+.|+|++|
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSS
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCC
Confidence 22 2334667777777777766211111100 01222367777777777762 344444 5677777777777
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccC------CCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSE------NQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~------N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.|+. ++..+..+++|+.|+|++ |.+.. .++..+..+++|+.|++++|.-
T Consensus 524 ~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 524 SFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLR----EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCC-----cChhhhcCCCCCEEECCCCcccccCcccc----cChHHHhcCCCCCEEECCCCcC
Confidence 7764 344555677777777743 44433 2445566677777777777654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-17 Score=203.15 Aligned_cols=322 Identities=15% Similarity=0.134 Sum_probs=179.2
Q ss_pred CcchhhcccCCccccCCCCChhhH---------------HHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHh
Q psy18075 337 GPAVIELNHKGRMTDKPNDDVSDI---------------LKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAIN 401 (999)
Q Consensus 337 ~P~v~~L~~~l~~ld~~~~~~~~I---------------~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~ 401 (999)
.|..+.-..+++.+++..+.+... ..+...+.-..-..++.|++++|.+.- .++..+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-------~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-------QLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-------SCCGGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-------cChHHHh
Confidence 344454455666666666665551 012222220011268889999988631 3456688
Q ss_pred cCCCcCEEEccCCC-CCh-hHHHHHHHHH---hhChhhHHHhhhhcccCCCccccch--HHHHhhhhhhccCCcccEEEe
Q psy18075 402 EVKVLVSLNLEGNT-LGV-NAAKAIADAL---SKHEHFKRALWKDMFTGRMKTEIPD--ALRYLGNGLQQAGARLVELDL 474 (999)
Q Consensus 402 ~~~~L~~LdLs~N~-L~~-~~~~~L~~~L---~~~~~Lk~ll~~nl~t~rl~~~ip~--~l~~L~~~L~~~~~sL~~LdL 474 (999)
.+++|+.|+|++|. +.. ..+..+...- ..+++|+. .++..+++. .+|. .+. .+++|+.|+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~---L~Ls~N~L~-~ip~~~~l~--------~L~~L~~L~L 580 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI---FYMGYNNLE-EFPASASLQ--------KMVKLGLLDC 580 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE---EECCSSCCC-BCCCHHHHT--------TCTTCCEEEC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE---EEeeCCcCC-ccCChhhhh--------cCCCCCEEEC
Confidence 88999999999997 876 5555554321 22234432 233344444 5665 443 3457777788
Q ss_pred cCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhcc--------------CCcCCCCC--CCcc
Q psy18075 475 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE--------------SSKKEGSP--LALK 538 (999)
Q Consensus 475 S~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~--------------~s~~~g~~--~sLk 538 (999)
++|.|+... .+ ..+++|+.|+|++|.|+. +...+..+.. ++..++.. .+|+
T Consensus 581 s~N~l~~lp--~~------~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 581 VHNKVRHLE--AF------GTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp TTSCCCBCC--CC------CTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred CCCCcccch--hh------cCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence 777776332 22 234567777777777651 1111111100 01111111 2266
Q ss_pred EEEccCCCCCchhHHHHHHHHh--hcccccccccCCCccCchhhhhhhHH-hhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 539 VFIAGRNRLENEGAKMLAAVFK--KLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 539 ~L~Ls~N~L~d~g~~~L~~~L~--~~~sLe~LdLs~N~It~~g~~~La~a-L~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
.|+|++|++..... .++..+. .+++|+.|+|++|.|+. ++.. +..+++|+.|+|++|.|+. ++..+
T Consensus 648 ~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~ 716 (876)
T 4ecn_A 648 SVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTS-----IPENS 716 (876)
T ss_dssp EEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSC-----CCTTS
T ss_pred EEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCc-----cChHH
Confidence 66666666653210 0000111 12366777777777663 3333 3356777888888777762 22222
Q ss_pred c--------CCCCCcEEEcCCCCCCccchHHHHHhcc--CCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccC-
Q psy18075 616 S--------KLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE- 684 (999)
Q Consensus 616 ~--------~l~sL~~LdLs~N~L~d~g~~~La~aL~--~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~- 684 (999)
. .+++|+.|+|++|.++. ++..+. .+++|+.|+|++|.|+. ++..+..+++|+.|+|++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCC
T ss_pred hccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCC
Confidence 2 22377888888887762 345554 56778888888887774 344566777888887765
Q ss_pred -----CCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 685 -----NQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 685 -----N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
|.+.. .++..+..+++|+.|++++|.-
T Consensus 787 ~~ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 787 RDAEGNRILR----QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp BCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcccccccc----cChHHHhcCCCCCEEECCCCCC
Confidence 44443 2445667777888888877765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=186.14 Aligned_cols=332 Identities=16% Similarity=0.184 Sum_probs=209.5
Q ss_pred CCcchhhcccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCC
Q psy18075 336 LGPAVIELNHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNT 415 (999)
Q Consensus 336 L~P~v~~L~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~ 415 (999)
+.|..+.-..+++.+++..+....+... .-..++.|++++|.+... .++..+..+++|++|+|++|.
T Consensus 60 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~L~~N~l~~~------~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 60 LDISVFKFNQELEYLDLSHNKLVKISCH-------PTVNLKHLDLSFNAFDAL------PICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp EEGGGGTTCTTCCEEECCSSCCCEEECC-------CCCCCSEEECCSSCCSSC------CCCGGGGGCTTCCEEEEEESS
T ss_pred cChHHhhcccCCCEEecCCCceeecCcc-------ccCCccEEeccCCccccc------cchhhhccCCcceEEEecCcc
Confidence 3355555556777777777665543222 223688899999988421 123457888999999999999
Q ss_pred CChhHHHHHHHHHhhChhh--HHHhhhhcccCCC--ccccchHHHHhh--------------------------------
Q psy18075 416 LGVNAAKAIADALSKHEHF--KRALWKDMFTGRM--KTEIPDALRYLG-------------------------------- 459 (999)
Q Consensus 416 L~~~~~~~L~~~L~~~~~L--k~ll~~nl~t~rl--~~~ip~~l~~L~-------------------------------- 459 (999)
|..... ..++++ +.+ ++..+++ ....|..+..+.
T Consensus 127 l~~~~~-------~~l~~L~L~~L---~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 127 LEKSSV-------LPIAHLNISKV---LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp CCGGGG-------GGGTTSCEEEE---EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred cchhhc-------cccccceeeEE---EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 876322 222232 211 1111222 122222222110
Q ss_pred --------------h--hhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhh---------
Q psy18075 460 --------------N--GLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC--------- 514 (999)
Q Consensus 460 --------------~--~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~--------- 514 (999)
. .-+..+++|+.|+|++|.++...+..+...+. +++|++|++++|.++....
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh---hCcccEEEeecccccCccccchhhcccc
Confidence 0 01234566777777777776655555544432 2478888888887652111
Q ss_pred -------------------hHHHHHHhh----------hccCCcC-CCCCCCccEEEccCCCCCchhHHHHHHHHhhccc
Q psy18075 515 -------------------KLLSKALHD----------CYESSKK-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 564 (999)
Q Consensus 515 -------------------~~La~~L~~----------~~~~s~~-~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~s 564 (999)
..+...+.. +.-.... .+.+++|++|++++|++.+.. +..+..+++
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT----TTTCCCCSS
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhh----hhhhccCCC
Confidence 112222111 0000000 145678999999999988632 344567889
Q ss_pred ccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 565 Le~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
|++|+|++|.|+. +..++..+..+++|+.|+|++|.+... ++. .+..+++|+.|++++|.++... +..+
T Consensus 350 L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~----l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l 419 (520)
T 2z7x_B 350 LETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYD----EKKGDCSWTKSLLSLNMSSNILTDTI----FRCL 419 (520)
T ss_dssp CCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCC----GGGCSCCCCTTCCEEECCSSCCCGGG----GGSC
T ss_pred CCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcc----cccchhccCccCCEEECcCCCCCcch----hhhh
Confidence 9999999999985 234667788899999999999998742 333 3556789999999999987432 2222
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH-HHhcCCCCCEEeCCCCCCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK-LMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~-~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
. ++|+.|+|++|+|+. ++..+..+++|++|+|++|.|+.. +. .+..+++|+.|++++|....+.
T Consensus 420 ~--~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIKS-----IPKQVVKLEALQELNVASNQLKSV-----PDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp C--TTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred c--ccCCEEECCCCcccc-----cchhhhcCCCCCEEECCCCcCCcc-----CHHHhccCCcccEEECcCCCCcccC
Confidence 2 789999999999984 455566889999999999999862 22 4778899999999999876543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-17 Score=197.82 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCc--
Q psy18075 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGA-- 608 (999)
Q Consensus 531 ~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~-- 608 (999)
.+..++|+.|++++|++...+. ++..+..+++|++|+|++|.++.. +..+..+++|+.|+|++|.+.....
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIM-----SANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEE-----CCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccc-----hhhccCCCCCCeeECCCCccCCccChh
Confidence 3456778888888888764321 123345566777777777765532 2333344445555555544432100
Q ss_pred -------------------ccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 609 -------------------IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 609 -------------------~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
...+..+..+++|+.|++++|.+++.. ++..+..+++|+.|+|++|.++.. .+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI----SWG 491 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc----Chh
Confidence 012223334444455555544443211 123344445555555555555432 123
Q ss_pred hhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.+..+++|++|+|++|.++.. .+..+..+++|+.|++++|.-
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCC
T ss_pred hhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcC
Confidence 344555555555555555542 133444555555555555543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-17 Score=195.91 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=143.8
Q ss_pred CCCCccEEEccCCccCchhhhHHHHHHhhhcc-------------CCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhh
Q psy18075 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYE-------------SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 561 (999)
Q Consensus 495 ~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~-------------~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~ 561 (999)
.+++|++|+|++|.++..+. +...+..++. .+..++..++|+.|++++|++..... ...+..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE---FSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT---TTTTTT
T ss_pred cCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC---hhhhhc
Confidence 45678888888887763321 0111111111 12234556778888888887764321 124566
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+.+. .++..+..+++|+.|+|++|.++... +.
T Consensus 423 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~ 491 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQIS----WG 491 (606)
T ss_dssp CTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEEC----TT
T ss_pred cccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCccC----hh
Confidence 78888888888888764 345667788999999999988742 24667788999999999999998543 45
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC-CCCEEeCCCCCCCCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDDEGECSD 719 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~-~L~~L~Ls~N~~e~ed 719 (999)
.+..+++|++|+|++|+++.. .+..+..+++|+.|+|++|+|+. ++..+..++ +|+.|++++|....+.
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred hhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCCCcccCC
Confidence 677789999999999999873 35567789999999999999985 444477776 5999999999876544
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-17 Score=181.64 Aligned_cols=275 Identities=20% Similarity=0.214 Sum_probs=175.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... +..+..+++|++|+|++|.|....... +..+++|+.+. +..+++. .+|.
T Consensus 55 ~l~~L~l~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~---L~~n~l~-~l~~ 119 (332)
T 2ft3_A 55 DTTLLDLQNNDISELR-------KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLY---ISKNHLV-EIPP 119 (332)
T ss_dssp TCCEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTCCEEE---CCSSCCC-SCCS
T ss_pred CCeEEECCCCcCCccC-------HhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCCCEEE---CCCCcCC-ccCc
Confidence 6778999998884211 234678889999999999887643322 23344443322 2222222 2332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ .++|++|+|++|.++......+ ..+++|++|++++|.++..+.. . ..++.
T Consensus 120 ~~----------~~~L~~L~l~~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~--~----------~~~~~ 171 (332)
T 2ft3_A 120 NL----------PSSLVELRIHDNRIRKVPKGVF------SGLRNMNCIEMGGNPLENSGFE--P----------GAFDG 171 (332)
T ss_dssp SC----------CTTCCEEECCSSCCCCCCSGGG------SSCSSCCEEECCSCCCBGGGSC--T----------TSSCS
T ss_pred cc----------cccCCEEECCCCccCccCHhHh------CCCccCCEEECCCCccccCCCC--c----------ccccC
Confidence 21 1578888888888876554333 2346888888888887632211 0 11122
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
. +|+.|++++|+++.- +..+ .++|++|+|++|.|+... +..+..+++|+.|+|++|.++.. ...
T Consensus 172 l-~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~N~l~~~----~~~ 235 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGI-----PKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIRMI----ENG 235 (332)
T ss_dssp C-CCSCCBCCSSBCSSC-----CSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCSSCCCCC----CTT
T ss_pred C-ccCEEECcCCCCCcc-----Cccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCCcC----Chh
Confidence 2 688888888887742 1111 268888888888887643 24556678899999999888752 223
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh--ccCCCcCEEEccCCCCChhc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L--~~~~sL~~LdLs~N~Is~eg 691 (999)
.+..+++|+.|++++|.++. ++..+..+++|+.|+|++|+|+..+...+.... ...+.|+.|++.+|++...+
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred HhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 45668889999999988862 445567778899999999988876554433211 11467888999999886422
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
....++..++.|+.+++++|.
T Consensus 311 --~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 --VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --SCGGGGTTBCCSTTEEC----
T ss_pred --cCcccccccchhhhhhccccc
Confidence 223567778888888887763
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=189.80 Aligned_cols=162 Identities=18% Similarity=0.277 Sum_probs=104.1
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|++|++++|++++. ++..+..+++|+.|+|++|.|+.. ..++..+..+++|+.|+|++|.+... +
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~----~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH----A 419 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC----C
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc----c
Confidence 3455677777777776642 223445566777777777777642 23445566677777777777777631 2
Q ss_pred cc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 612 GQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 612 ~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+. .+..+++|+.|++++|.++.. ++..+. ++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~- 487 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLKS- 487 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCCC-
T ss_pred ChhhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCCC-
Confidence 21 244566777777777777532 122211 678888888888873 44445577888888888888875
Q ss_pred cHHHHHH-HHhcCCCCCEEeCCCCCCCCCC
Q psy18075 691 GVEEMEK-LMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 691 g~~~L~~-~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
++. .+..+++|+.|++++|....+-
T Consensus 488 ----l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 488 ----VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp ----CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred ----CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 233 3677888888888888766543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-17 Score=192.82 Aligned_cols=133 Identities=15% Similarity=0.266 Sum_probs=76.4
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
+|+.|++++|.++... ...+..+++|+.|+|++|.++ .++..+..+++|++|++++|.++... +..+
T Consensus 255 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~----~~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS----SNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLC----QISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCC----TTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGG----GGCG
T ss_pred ceeEEEeecCccCccC----HHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCc----hhhh
Confidence 3444555555544321 223555677777777777766 35556667777777777777776332 2344
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
..+++|++|++++|.+...- ....+..+++|++|++++|.++.... ....+..+++|+.|++++|.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLEL---GTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBC---CSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCS
T ss_pred hccCcCCEEECCCCCccccc---chhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCc
Confidence 55567777777777655211 01124556677777777776655320 12235566666666666654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-17 Score=190.05 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=137.4
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.|+..+ .+++|++|+|++|.|+..... ..++|+.|+|++
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~-----------~~~~L~~L~L~~N~l~~~~~~-----------------~l~~L~~L~L~~ 129 (487)
T 3oja_A 78 SLSTLRTLDLNNNYVQELL-----------VGPSIETLHAANNNISRVSCS-----------------RGQGKKNIYLAN 129 (487)
T ss_dssp TCTTCCEEECCSSEEEEEE-----------ECTTCCEEECCSSCCCCEEEC-----------------CCSSCEEEECCS
T ss_pred cCCCCCEEEecCCcCCCCC-----------CCCCcCEEECcCCcCCCCCcc-----------------ccCCCCEEECCC
Confidence 3568888999988886543 125888999998888743321 124689999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|+++... +..+..+++|+.|+|++|.|+......+. ..+++|+.|+|++|.|+. + ..+..+++|+.|
T Consensus 130 N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~l~~L~~L~Ls~N~l~~-----~-~~~~~l~~L~~L 196 (487)
T 3oja_A 130 NKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYD-----V-KGQVVFAKLKTL 196 (487)
T ss_dssp SCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCE-----E-ECCCCCTTCCEE
T ss_pred CCCCCCC----chhhcCCCCCCEEECCCCCCCCcChHHHh---hhCCcccEEecCCCcccc-----c-cccccCCCCCEE
Confidence 9988642 23456678899999999998875332222 256889999999998874 2 223357889999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++.. +..+..+++|+.|+|++|.|+. ++..+..+++|+.|++++|++... .++..+..++.
T Consensus 197 ~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~ 263 (487)
T 3oja_A 197 DLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQR 263 (487)
T ss_dssp ECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHH
T ss_pred ECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcc-----cchhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCC
Confidence 9999988743 3346667889999999998884 444567788899999999988732 45566677777
Q ss_pred CCEEeCC
Q psy18075 705 AAALVLE 711 (999)
Q Consensus 705 L~~L~Ls 711 (999)
|+.+++.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 7766553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=192.10 Aligned_cols=273 Identities=17% Similarity=0.154 Sum_probs=180.8
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..+++.++.+.... ...+..+++|+.|+|++|.|.......| ..+++|+.+ ++..+++....|.
T Consensus 52 ~l~~l~l~~~~l~~lp-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L---~L~~n~l~~~~~~ 117 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLP-------AALLDSFRQVELLNLNDLQIEEIDTYAF----AYAHTIQKL---YMGFNAIRYLPPH 117 (597)
T ss_dssp CCSEEEESSCEESEEC-------THHHHHCCCCSEEECTTSCCCEECTTTT----TTCTTCCEE---ECCSSCCCCCCTT
T ss_pred CceEEEeeCCCCCCcC-------HHHHccCCCCcEEECCCCCCCCCChHHh----cCCCCCCEE---ECCCCcCCCCCHH
Confidence 4567788887773221 1235677888888888888876433322 234444332 2223333333332
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
. +..+++|+.|+|++|.|+......| ..+++|++|+|++|.|+...... ++.
T Consensus 118 ~--------~~~l~~L~~L~L~~n~l~~l~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~--------------~~~ 169 (597)
T 3oja_B 118 V--------FQNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTTLSMSNNNLERIEDDT--------------FQA 169 (597)
T ss_dssp T--------TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSCCCBCCTTT--------------TTT
T ss_pred H--------HcCCCCCCEEEeeCCCCCCCCHHHh------ccCCCCCEEEeeCCcCCCCChhh--------------hhc
Confidence 2 2346799999999999986654433 23579999999999987433222 233
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhh--------------hhhHHhhhcccCceeecc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT--------------ALSDAFEENKNLRHLNLN 599 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~--------------~La~aL~~~~~Lr~LdLS 599 (999)
+++|+.|+|++|+++..+ +..+++|+.|++++|.++..+.. .+... ..++|+.|+|+
T Consensus 170 l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~ 240 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 240 (597)
T ss_dssp CTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECC
T ss_pred CCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECC
Confidence 467999999999888643 33356666666666655532110 00110 12468888888
Q ss_pred CCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCE
Q psy18075 600 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 679 (999)
Q Consensus 600 ~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~ 679 (999)
+|.+++. ..+..+++|+.|+|++|.++.. ++..+..+++|+.|+|++|.++.- +..+..+++|+.
T Consensus 241 ~n~l~~~------~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~ 305 (597)
T 3oja_B 241 HNNLTDT------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKV 305 (597)
T ss_dssp SSCCCCC------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCE
T ss_pred CCCCCCC------hhhccCCCCCEEECCCCccCCC----CHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcE
Confidence 8887742 3566788999999999998754 345667789999999999998852 334456889999
Q ss_pred EEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 680 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 680 LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|+|++|.++. ++..+..+++|+.|++++|.-..
T Consensus 306 L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 306 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCCCCc-----cCcccccCCCCCEEECCCCCCCC
Confidence 9999999985 44556778899999999987643
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=173.59 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=117.4
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.+...... + ..+++|++|+|++|.++..... . .++..++|++|++++|
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~-~------~~l~~L~~L~l~~n~l~~~~~~---~----------~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSN-F------LGLEQLEHLDFQHSNLKQMSEF---S----------VFLSLRNLIYLDISHT 136 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEE-E------ETCTTCCEEECTTSEEESSTTT---T----------TTTTCTTCCEEECTTS
T ss_pred ccccCEEECCCCccccChhh-c------CCCCCCCEEECCCCcccccccc---h----------hhhhccCCCEEECCCC
Confidence 35777777777776532211 1 2345777777777776533210 0 1123355777777777
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++.... +..+..+++|++|+|++|.++.. .++..+..+++|+.|+|++|.++. ..+..+..+++|+.|+
T Consensus 137 ~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 137 HTRVAF----NGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLN 205 (306)
T ss_dssp CCEECS----TTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEE
T ss_pred cCCccc----hhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEE
Confidence 765432 22345567777777777777642 133455566777777777777764 2234555677777777
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccC-CCcCEEEccCCCCChh-cHHHHHHHHhcCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEE-GVEEMEKLMKSFG 703 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~-~sL~~LdLs~N~Is~e-g~~~L~~~L~~l~ 703 (999)
|++|.++.... ..+..+++|+.|+|++|.|+... ...+..+ ++|++|+|++|++... ....+...++..+
T Consensus 206 L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 206 MSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSK----KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp CTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCS----SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred CCCCccCccCh----hhccCcccCCEeECCCCCCcccC----HHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 77777765432 23455677777777777776532 2234444 3777777777777543 2334445554433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=171.70 Aligned_cols=279 Identities=18% Similarity=0.220 Sum_probs=185.7
Q ss_pred ccCCccccCCCCChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHH
Q psy18075 344 NHKGRMTDKPNDDVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKA 423 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~ 423 (999)
..+++.+++.......+.. + ... ..++.|++++|.+... . . +..+++|++|+|++|.+.....
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~---~~l--~~L~~L~l~~n~l~~~---~-----~-~~~l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-L---KNL--TKLVDILMNNNQIADI---T-----P-LANLTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-G---TTC--TTCCEEECCSSCCCCC---G-----G-GTTCTTCCEEECCSSCCCCCGG--
T ss_pred hcCCCEEECCCCccCCchh-h---hcc--ccCCEEECCCCccccC---h-----h-hcCCCCCCEEECCCCCCCCChH--
Confidence 3455555555555554433 1 111 1566777777776321 1 1 5667777777777777765321
Q ss_pred HHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEE
Q psy18075 424 IADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 503 (999)
Q Consensus 424 L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~ 503 (999)
+..+++|+.+.... +++.. ++ -+..+++|+.|++++ .+.... .+ ..+++|++|+
T Consensus 130 ----~~~l~~L~~L~l~~---n~l~~-~~---------~~~~l~~L~~L~l~~-~~~~~~--~~------~~l~~L~~L~ 183 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSS---NTISD-IS---------ALSGLTSLQQLSFGN-QVTDLK--PL------ANLTTLERLD 183 (466)
T ss_dssp ----GTTCTTCSEEEEEE---EEECC-CG---------GGTTCTTCSEEEEEE-SCCCCG--GG------TTCTTCCEEE
T ss_pred ----HcCCCCCCEEECCC---CccCC-Ch---------hhccCCcccEeecCC-cccCch--hh------ccCCCCCEEE
Confidence 33444443322211 11111 11 022456777777763 332221 12 3457899999
Q ss_pred ccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhh
Q psy18075 504 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 583 (999)
Q Consensus 504 Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~L 583 (999)
+++|.++... . +.. +++|++|++++|++..... +..+++|++|++++|.++..
T Consensus 184 l~~n~l~~~~--~----l~~----------l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~----- 236 (466)
T 1o6v_A 184 ISSNKVSDIS--V----LAK----------LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236 (466)
T ss_dssp CCSSCCCCCG--G----GGG----------CTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC-----
T ss_pred CcCCcCCCCh--h----hcc----------CCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccc-----
Confidence 9999887432 1 222 3569999999999886432 56688999999999998864
Q ss_pred hHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 584 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 584 a~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
..+..+++|+.|++++|.+... .. +..+++|+.|++++|.++.... +..+++|+.|+|++|.++...
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNL-----AP-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCG
T ss_pred -hhhhcCCCCCEEECCCCccccc-----hh-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCch
Confidence 3466789999999999998742 22 6778999999999999975321 667899999999999998632
Q ss_pred hhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 664 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 664 ~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+++|+.|+|++|.++.... +..+++|+.|++++|.-.+
T Consensus 304 ------~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 304 ------PISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp ------GGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCC
T ss_pred ------hhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCC
Confidence 26789999999999999987432 6789999999999986644
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-17 Score=197.86 Aligned_cols=318 Identities=14% Similarity=0.197 Sum_probs=197.1
Q ss_pred CcchhhcccCCccccCCCCC-hhh--HHHhhhhhcc-cCCCCccEEEeccCCCcCCChhhHHHHHH--HHhcCCCcCEEE
Q psy18075 337 GPAVIELNHKGRMTDKPNDD-VSD--ILKKLESISV-ESGQDSTKLSFAGQGLKLDNKEDAKVIVD--AINEVKVLVSLN 410 (999)
Q Consensus 337 ~P~v~~L~~~l~~ld~~~~~-~~~--I~~ll~~L~~-~~~~~l~~LsL~g~~L~~~s~~~~~~L~~--aL~~~~~L~~Ld 410 (999)
.|..+.-..+++.+++..+. +.. +..-+..+.. ..-..++.|++++|.+. .++. .+..+++|+.|+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--------~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--------TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--------SCCCHHHHTTCTTCCEEE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--------ccCchhhhccCCCCCEEe
Confidence 34444444455556665554 433 3333333210 00015677777777773 2333 566777777777
Q ss_pred ccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCc-ccEEEecCCCCCCccHHHHHH
Q psy18075 411 LEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGAR-LVELDLSDNAFGPIGVEGLAD 489 (999)
Q Consensus 411 Ls~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~s-L~~LdLS~N~L~~~gv~~L~~ 489 (999)
|++|.+..... .+..+++|+.+ ++..+++. .+|..+. .+++ |++|+|++|.++... .
T Consensus 337 L~~N~l~g~ip-----~~~~l~~L~~L---~L~~N~l~-~lp~~l~--------~l~~~L~~L~Ls~N~l~~lp-----~ 394 (636)
T 4eco_A 337 CLYNQLEGKLP-----AFGSEIKLASL---NLAYNQIT-EIPANFC--------GFTEQVENLSFAHNKLKYIP-----N 394 (636)
T ss_dssp CCSCCCEEECC-----CCEEEEEESEE---ECCSSEEE-ECCTTSE--------EECTTCCEEECCSSCCSSCC-----S
T ss_pred CcCCcCccchh-----hhCCCCCCCEE---ECCCCccc-cccHhhh--------hhcccCcEEEccCCcCcccc-----h
Confidence 77777763222 22334444322 22222222 3443322 3456 899999999887432 1
Q ss_pred HHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccc
Q psy18075 490 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 569 (999)
Q Consensus 490 ~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~Ld 569 (999)
.+....+++|+.|+|++|.++......+... ....-...+|+.|+|++|+++... ...+..+++|++|+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~-------~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL-------DPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSIN 463 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTT-------CSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEE
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhccc-------ccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEE
Confidence 1222223478999999998864322222100 000013457999999999998422 12345589999999
Q ss_pred cCCCccCchhhhhhhHH---hhhcccCceeeccCCCCCcCCccccccccc--CCCCCcEEEcCCCCCCccchHHHHHhcc
Q psy18075 570 MPQNGIYHVGITALSDA---FEENKNLRHLNLNDNTITYKGAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLT 644 (999)
Q Consensus 570 Ls~N~It~~g~~~La~a---L~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~--~l~sL~~LdLs~N~L~d~g~~~La~aL~ 644 (999)
|++|.|+......+... +..+++|+.|+|++|.++ .++..+. .+++|+.|+|++|.++. ++..+.
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~ 533 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL 533 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG
T ss_pred CCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-----ccChhhhhccCCCcCEEECCCCCCCC-----cChhhh
Confidence 99999984322211111 223449999999999998 3666776 88999999999999973 456677
Q ss_pred CCCCCCEEEccC------CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 645 DNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 645 ~~~~L~~LdLs~------N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
.+++|+.|+|++ |.+.. .++..+..+++|+.|+|++|.|+. ++..+. ++|+.|++++|.-.
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLR----EWPEGITLCPSLTQLQIGSNDIRK-----VNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCCCB-----CCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcccccCcccc----cChHHHhcCCCCCEEECCCCcCCc-----cCHhHh--CcCCEEECcCCCCc
Confidence 789999999955 55554 356677889999999999999965 233222 79999999998654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-17 Score=179.52 Aligned_cols=225 Identities=18% Similarity=0.143 Sum_probs=165.4
Q ss_pred HHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEec
Q psy18075 396 IVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLS 475 (999)
Q Consensus 396 L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS 475 (999)
+...+..+++|++|+|++|.|.......+. .+++|+.|+|+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---------------------------------------~l~~L~~L~Ls 66 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLA---------------------------------------PFTKLELLNLS 66 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHT---------------------------------------TCTTCCEEECT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhh---------------------------------------CCCcCCEEECC
Confidence 334455667899999999998764322221 24689999999
Q ss_pred CCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHH
Q psy18075 476 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 555 (999)
Q Consensus 476 ~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L 555 (999)
+|.+..... + ..+++|++|+|++|.|+... ..++|++|++++|+++....
T Consensus 67 ~n~l~~~~~--~------~~l~~L~~L~Ls~n~l~~l~-------------------~~~~L~~L~l~~n~l~~~~~--- 116 (317)
T 3o53_A 67 SNVLYETLD--L------ESLSTLRTLDLNNNYVQELL-------------------VGPSIETLHAANNNISRVSC--- 116 (317)
T ss_dssp TSCCEEEEE--E------TTCTTCCEEECCSSEEEEEE-------------------ECTTCCEEECCSSCCSEEEE---
T ss_pred CCcCCcchh--h------hhcCCCCEEECcCCcccccc-------------------CCCCcCEEECCCCccCCcCc---
Confidence 999964432 2 33578999999999886322 11459999999999886432
Q ss_pred HHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccc
Q psy18075 556 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 635 (999)
Q Consensus 556 ~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g 635 (999)
..+++|++|+|++|.|+... +..+..+++|+.|+|++|.++......+ ...+++|++|+|++|.++..
T Consensus 117 ----~~~~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 117 ----SRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp ----CCCSSCEEEECCSSCCCSGG----GBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEE-
T ss_pred ----cccCCCCEEECCCCCCCCcc----chhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCccc-
Confidence 23678999999999998642 2345668899999999999985322222 23578999999999998743
Q ss_pred hHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 636 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 636 ~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
.....+++|+.|+|++|.|+.. ...+..+++|+.|+|++|.|+. ++..+..+++|+.|++++|..
T Consensus 185 -----~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 185 -----KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -----ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred -----ccccccccCCEEECCCCcCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCc
Confidence 2233468999999999999853 3346778999999999999985 455677889999999999877
Q ss_pred C
Q psy18075 716 E 716 (999)
Q Consensus 716 e 716 (999)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 5
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-16 Score=175.08 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=185.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
....++..++++..... .-.++|++|+|++|.+.....
T Consensus 8 ~~~~l~c~~~~l~~ip~----------~~~~~l~~L~L~~n~l~~i~~-------------------------------- 45 (306)
T 2z66_A 8 SGTEIRCNSKGLTSVPT----------GIPSSATRLELESNKLQSLPH-------------------------------- 45 (306)
T ss_dssp ETTEEECCSSCCSSCCS----------CCCTTCCEEECCSSCCCCCCT--------------------------------
T ss_pred CCCEEEcCCCCcccCCC----------CCCCCCCEEECCCCccCccCH--------------------------------
Confidence 34567777777743211 123689999999998864110
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccH--HHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGV--EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 531 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv--~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~ 531 (999)
..+..+++|++|+|++|.++..+. ..+. .+++|++|+|++|.++... .. +
T Consensus 46 -------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~~~L~~L~Ls~n~i~~l~-----~~----------~ 97 (306)
T 2z66_A 46 -------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDF------GTTSLKYLDLSFNGVITMS-----SN----------F 97 (306)
T ss_dssp -------TTTTTCTTCSEEECCSSCCCEEEEEEHHHH------SCSCCCEEECCSCSEEEEE-----EE----------E
T ss_pred -------hHhhccccCCEEECCCCccCcccCcccccc------cccccCEEECCCCccccCh-----hh----------c
Confidence 111235799999999999986542 2222 2479999999999986321 11 2
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+..++|++|++++|++..... ...+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+... .+
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~ 167 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN---FL 167 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGG---EE
T ss_pred CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCccccc---cc
Confidence 234679999999999875432 12466789999999999998864 345567789999999999988742 25
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|++++|.++... +..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.++...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccCh----hhccCcccCCEeECCCCCCcccC
Confidence 567778999999999999998543 3556778999999999999987443 23567899999999999998742
Q ss_pred HHHHHHHHhcC-CCCCEEeCCCCCCCCC
Q psy18075 692 VEEMEKLMKSF-GMAAALVLEDDEGECS 718 (999)
Q Consensus 692 ~~~L~~~L~~l-~~L~~L~Ls~N~~e~e 718 (999)
...+..+ ++|+.|++++|.-..+
T Consensus 240 ----~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 240 ----KQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ----SSSCCCCCTTCCEEECTTCCEECS
T ss_pred ----HHHHHhhhccCCEEEccCCCeecc
Confidence 2345566 4899999999987554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-17 Score=191.41 Aligned_cols=166 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 532 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 532 g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+.+++|+.|++++|++...+. ++..+..+++|++|+|++|.++... ..+..+++|+.|++++|.+.....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~--- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMS-----SNFLGLEQLEHLDFQHSNLKQMSE--- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEE-----EEEETCTTCCEEECTTSEEESCTT---
T ss_pred ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccc-----ccccccCCCCEEEccCCccccccc---
Confidence 456789999999999875431 1234556788888888888776532 224456666666666665543210
Q ss_pred cccccCCCCCcEEEcCCCCCCccch---------------------HHHHHhccCCCCCCEEEccCCCCCCcchhhHHHh
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGA---------------------SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~---------------------~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
...+..+++|+.|++++|.+..... ..++..+..+++|+.|+|++|.++.. .+..
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~----~~~~ 489 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SPTA 489 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE----CTTT
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC----Chhh
Confidence 1123344455555555554432210 01223344445555555555554431 1223
Q ss_pred hccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 671 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+++|++|+|++|.++.. ....+..+++|+.|++++|..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSV----PDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCB
T ss_pred hhcccCCCEEeCCCCcCCCC----CHHHhhcccCCcEEEecCCcc
Confidence 34445555555555555442 112334455555555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=169.51 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=158.2
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.|+......+ ..+++|++|+|++|.++...... ++..++|++|++++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF------RACRNLTILWLHSNVLARIDAAA--------------FTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECTTT--------------TTTCTTCCEEECCSCT
T ss_pred CCceEEEeeCCcCCccCHHHc------ccCCCCCEEECCCCccceeCHhh--------------cCCccCCCEEeCCCCC
Confidence 589999999999987665444 23578999999999987433222 2234679999999997
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
++... +..+..+++|++|+|++|.|+.. .+..+..+++|++|+|++|.++.. ....+..+++|+.|+
T Consensus 92 ~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 92 QLRSVD----PATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLF 159 (285)
T ss_dssp TCCCCC----TTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEE
T ss_pred CccccC----HHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEE
Confidence 76532 23466688999999999999864 245567789999999999998742 233466788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
+++|.++... ...+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|.|+.. ....+..+++|
T Consensus 160 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L 227 (285)
T 1ozn_A 160 LHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRAL 227 (285)
T ss_dssp CCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTC
T ss_pred CCCCcccccC----HHHhcCccccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCCcC----CHHHcccCccc
Confidence 9999987443 234667799999999999998642 45667889999999999999873 23557889999
Q ss_pred CEEeCCCCCCCC
Q psy18075 706 AALVLEDDEGEC 717 (999)
Q Consensus 706 ~~L~Ls~N~~e~ 717 (999)
+.|++++|....
T Consensus 228 ~~L~l~~N~~~c 239 (285)
T 1ozn_A 228 QYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEeccCCCccC
Confidence 999999987654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-17 Score=181.34 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=164.7
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.+..++++++++.... ..+ .++|+.|+|++|.|....... +..+++|+.+ ++..+++....|.
T Consensus 34 ~l~~l~~~~~~l~~ip--------~~~--~~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L---~L~~n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP--------KEI--SPDTTLLDLQNNDISELRKDD----FKGLQHLYAL---VLVNNKISKIHEK 96 (332)
T ss_dssp ETTEEECCSSCCSSCC--------SCC--CTTCCEEECCSSCCCEECTTT----TTTCTTCCEE---ECCSSCCCEECGG
T ss_pred cCCEEECCCCCccccC--------CCC--CCCCeEEECCCCcCCccCHhH----hhCCCCCcEE---ECCCCccCccCHh
Confidence 5677888888874321 111 368999999999998643322 2334444322 2223333333333
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.++...... .++|++|+|++|.++...... ++.
T Consensus 97 ~~--------~~l~~L~~L~L~~n~l~~l~~~~---------~~~L~~L~l~~n~i~~~~~~~--------------~~~ 145 (332)
T 2ft3_A 97 AF--------SPLRKLQKLYISKNHLVEIPPNL---------PSSLVELRIHDNRIRKVPKGV--------------FSG 145 (332)
T ss_dssp GS--------TTCTTCCEEECCSSCCCSCCSSC---------CTTCCEEECCSSCCCCCCSGG--------------GSS
T ss_pred Hh--------hCcCCCCEEECCCCcCCccCccc---------cccCCEEECCCCccCccCHhH--------------hCC
Confidence 32 23567888888888776433211 146788888887776332211 123
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+++|+.|++++|.++..+.. +..+..+ +|+.|++++|.++.. +..+. ++|+.|+|++|.+... .+.
T Consensus 146 l~~L~~L~l~~n~l~~~~~~--~~~~~~l-~L~~L~l~~n~l~~l-----~~~~~--~~L~~L~l~~n~i~~~----~~~ 211 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFE--PGAFDGL-KLNYLRISEAKLTGI-----PKDLP--ETLNELHLDHNKIQAI----ELE 211 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSC--TTSSCSC-CCSCCBCCSSBCSSC-----CSSSC--SSCSCCBCCSSCCCCC----CTT
T ss_pred CccCCEEECCCCccccCCCC--cccccCC-ccCEEECcCCCCCcc-----Ccccc--CCCCEEECCCCcCCcc----CHH
Confidence 35688888888887643321 2233334 778888888877752 22222 5788888888877742 234
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
.+..+++|+.|++++|.++.... ..+..+++|+.|+|++|.|+. ++..+..+++|++|++++|.|+..+..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred HhcCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChh
Confidence 56667788888888888775432 345566888888888888873 444567788888888888888775443
Q ss_pred HHHHHH--hcCCCCCEEeCCCCCC
Q psy18075 694 EMEKLM--KSFGMAAALVLEDDEG 715 (999)
Q Consensus 694 ~L~~~L--~~l~~L~~L~Ls~N~~ 715 (999)
.+.... .....|+.|++++|..
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSS
T ss_pred HccccccccccccccceEeecCcc
Confidence 332211 1145677888877754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-16 Score=198.40 Aligned_cols=208 Identities=14% Similarity=0.246 Sum_probs=139.0
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
|+.|+|++|.|+... ..+....+++|+.|+|++|.|+... ..+...+. .-...+|+.|+|++|++.
T Consensus 621 L~~L~Ls~N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~--------~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMD--------DYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp CCEEECCSSCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTT--------TCCCCCEEEEECCSSCCC
T ss_pred CCEEECcCCCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhc--------cccCCCcCEEEccCCcCC
Confidence 666666666665322 1111112234666777776664211 00000000 002347999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhH---HhhhcccCceeeccCCCCCcCCccccccccc--CCCCCcE
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD---AFEENKNLRHLNLNDNTITYKGAIPLGQALS--KLPSLAI 623 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~---aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~--~l~sL~~ 623 (999)
.-. ...+..+++|+.|+|++|.|+......+.. .+.++++|+.|+|++|.|+ .++..+. .+++|+.
T Consensus 687 ~lp----~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-----~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 687 KFP----TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-----SLSDDFRATTLPYLSN 757 (876)
T ss_dssp SCC----HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-----CCCGGGSTTTCTTCCE
T ss_pred ccC----HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-----cchHHhhhccCCCcCE
Confidence 421 223446899999999999998432111111 1234559999999999998 4667776 8899999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccC------CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~------N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~ 697 (999)
|+|++|.++. ++..+..+++|+.|+|++ |.+.. .++..+..+++|+.|+|++|.|+. ++.
T Consensus 758 L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~ 823 (876)
T 4ecn_A 758 MDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR----QWPTGITTCPSLIQLQIGSNDIRK-----VDE 823 (876)
T ss_dssp EECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCC----CCCTTGGGCSSCCEEECCSSCCCB-----CCS
T ss_pred EEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCcccccccc----cChHHHhcCCCCCEEECCCCCCCc-----cCH
Confidence 9999999973 456677889999999987 55554 356677889999999999999954 333
Q ss_pred HHhcCCCCCEEeCCCCCC
Q psy18075 698 LMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 698 ~L~~l~~L~~L~Ls~N~~ 715 (999)
.+. ++|+.|++++|.-
T Consensus 824 ~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCC--SSSCEEECCSCTT
T ss_pred hhc--CCCCEEECCCCCC
Confidence 322 6899999999865
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-17 Score=179.60 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|+|++|+++. ++..+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.+.. .++..
T Consensus 183 ~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~ 248 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALR----NYPPI 248 (328)
T ss_dssp TTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCC----BCCCC
T ss_pred CCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchh----hhHHH
Confidence 345555555555441 22334444555555555555542 22334444555555555544432 23334
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCC
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|++.. .++..+..+++|+.+++..|.+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGGGS
T ss_pred hcCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHHHH
Confidence 44445555555555444321 22333444555555555544433 2334444455555555544433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=180.62 Aligned_cols=290 Identities=16% Similarity=0.171 Sum_probs=188.4
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhh-cccCCCcc---
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKD-MFTGRMKT--- 449 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~n-l~t~rl~~--- 449 (999)
.++.|++++|.+........ .....+++|+.|++++|.+.+.....+.+.+...++++.+...+ .+.+ +..
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~-~~~~~~ 271 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPL----PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNP 271 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCC----SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC-CSCCCC
T ss_pred cccEEEccCCcccccccccc----chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc-cccccc
Confidence 56777777777632100000 01123567777777777777777777766555554443322111 1111 000
Q ss_pred --------------------ccchHH--HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC
Q psy18075 450 --------------------EIPDAL--RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507 (999)
Q Consensus 450 --------------------~ip~~l--~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n 507 (999)
.+|... ..+ ..+.....+|+.|+|++|.++......+.. +++|++|+|++|
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l-~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~------l~~L~~L~Ls~N 344 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQH------LKSLEFLDLSEN 344 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCC-CHHHHHSTTCCEEEEESSCCCCCCHHHHHH------CTTCCEEECCSS
T ss_pred cchhhhhhhcccccccccccccchhhhcccc-hhhhhhcccceEEEeccCccccCCHHHHhc------CccccEEEccCC
Confidence 000000 000 001112468999999999998666443322 468999999999
Q ss_pred ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHh
Q psy18075 508 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 587 (999)
Q Consensus 508 ~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL 587 (999)
.++....... ...+..++|+.|++++|+++... .....+..+++|++|+|++|+|+. ++..+
T Consensus 345 ~l~~~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~ 406 (549)
T 2z81_A 345 LMVEEYLKNS-----------ACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHP-----MPDSC 406 (549)
T ss_dssp CCCHHHHHHH-----------TCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCC-----CCSCC
T ss_pred ccccccccch-----------hhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCcc-----CChhh
Confidence 9873221110 01234467999999999998532 223457789999999999999883 55666
Q ss_pred hhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhH
Q psy18075 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL 667 (999)
Q Consensus 588 ~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L 667 (999)
..+++|++|+|++|.++. +...+ .++|+.|++++|.++.. ...+++|+.|+|++|+|+. +
T Consensus 407 ~~~~~L~~L~Ls~N~l~~-----l~~~~--~~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~-----i 466 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRV-----VKTCI--PQTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKT-----L 466 (549)
T ss_dssp CCCTTCCEEECTTSCCSC-----CCTTS--CTTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSS-----C
T ss_pred cccccccEEECCCCCccc-----ccchh--cCCceEEECCCCChhhh--------cccCChhcEEECCCCccCc-----C
Confidence 778899999999999873 33322 25899999999998742 2467999999999999984 2
Q ss_pred HHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 668 VKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 668 ~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
+. ...+++|++|+|++|.++.. ....+..+++|+.|++++|....+
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCC----CTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CC-cccCccCCEEecCCCccCCc----CHHHHhcCcccCEEEecCCCccCC
Confidence 22 34688999999999999863 344578899999999999986543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-17 Score=181.49 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=158.3
Q ss_pred CCcccEEEecC-CCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~-N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
+++|++|+|++ |.+.......+. .+++|++|+|++|.++..... .+.. .++|++|++++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l~~~~p~----~~~~----------l~~L~~L~Ls~ 134 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTNVSGAIPD----FLSQ----------IKTLVTLDFSY 134 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEECCEEECCG----GGGG----------CTTCCEEECCS
T ss_pred CCCCCeeeCCCCCcccccCChhHh------cCCCCCEEECcCCeeCCcCCH----HHhC----------CCCCCEEeCCC
Confidence 56999999995 888654444442 347999999999998733222 2222 35699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcc-cCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~-~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|++... ++..+..+++|++|+|++|.|+.. ++..+..++ .|+.|+|++|.+.. .++..+..++ |+.
T Consensus 135 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 135 NALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAF 201 (313)
T ss_dssp SEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEE----ECCGGGGGCC-CSE
T ss_pred CccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeec----cCChHHhCCc-ccE
Confidence 998743 344577799999999999999854 556677777 99999999999875 3444555565 999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++++|.++.. ++..+..+++|+.|+|++|.++... ..+..+++|++|+|++|.|+.. ++..+..++
T Consensus 202 L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~ 268 (313)
T 1ogq_A 202 VDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLK 268 (313)
T ss_dssp EECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCT
T ss_pred EECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCc
Confidence 99999998743 4567778899999999999998532 2367789999999999999753 556788999
Q ss_pred CCCEEeCCCCCC
Q psy18075 704 MAAALVLEDDEG 715 (999)
Q Consensus 704 ~L~~L~Ls~N~~ 715 (999)
+|+.|++++|.-
T Consensus 269 ~L~~L~Ls~N~l 280 (313)
T 1ogq_A 269 FLHSLNVSFNNL 280 (313)
T ss_dssp TCCEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 999999999865
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=164.75 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=67.5
Q ss_pred ccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 537 LKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 537 Lk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
|+.|+|++| +|++.|+..|+++|+.+++|+.|+|++|+|++.|+.+|+.+|..++.|++|+|++|.|++.|+..|+++|
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 555666553 5555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCcEEEcCCC---CCCccchHHHHHhccCCCCCCEEEccCCCC
Q psy18075 616 SKLPSLAILNLGDC---LLKSAGASSIAKYLTDNTTLEDVNLTCNEI 659 (999)
Q Consensus 616 ~~l~sL~~LdLs~N---~L~d~g~~~La~aL~~~~~L~~LdLs~N~I 659 (999)
..+++|++|+|++| .+++.|+..|+.+|..+++|+.|++++|.+
T Consensus 123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 55555555555433 344444444555554445555555544443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-16 Score=182.06 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc-----cCCCCCcEEEcCCCCCC
Q psy18075 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-----SKLPSLAILNLGDCLLK 632 (999)
Q Consensus 558 ~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL-----~~l~sL~~LdLs~N~L~ 632 (999)
.+..+++|+.|++++|.++...+..+...+. .++|+.|++++|.+.+. ++..+ ..+++|+.+++++|.+.
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~ 289 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFG 289 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCC
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhh-hCcccEEEeecccccCc----cccchhhcccccCceeEecccccccee
Confidence 4556677777777777777665555554432 35777777777766531 22222 23333333333333331
Q ss_pred ccchHHHHHh---------------------ccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 633 SAGASSIAKY---------------------LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 633 d~g~~~La~a---------------------L~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
.....+... ...+++|++|++++|.++.. ++..+..+++|+.|+|++|.|+.
T Consensus 290 -~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~-- 362 (520)
T 2z7x_B 290 -FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKE-- 362 (520)
T ss_dssp -SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCB--
T ss_pred -cchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCc--
Confidence 000111111 13456777777777776652 23445566777777777777753
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
...++..+..+++|+.|++++|.-
T Consensus 363 l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp HHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cccchHHHhhCCCCCEEECCCCcC
Confidence 334555666777777777776654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=174.68 Aligned_cols=216 Identities=15% Similarity=0.149 Sum_probs=164.5
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|+.|+|++|.++......+ ..+++|++|+|++|.|+.... ..+.. .++|++|++++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~----~~~~~----------l~~L~~L~L~~ 133 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSF------SSLGSLEHLDLSYNYLSNLSS----SWFKP----------LSSLTFLNLLG 133 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCSSCCH----HHHTT----------CTTCSEEECTT
T ss_pred cCCCCCEEECCCCccCccCHhhc------CCCCCCCEEECCCCcCCcCCH----hHhCC----------CccCCEEECCC
Confidence 35799999999999987654444 235799999999999974332 22222 35699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|++..... ...+..+++|++|++++|. ++.. ....+..+++|+.|++++|.+.. ..+..+..+++|++
T Consensus 134 n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 134 NPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASDLQS----YEPKSLKSIQNVSH 202 (353)
T ss_dssp CCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETTCCE----ECTTTTTTCSEEEE
T ss_pred CCCcccCc---hhhhccCCCCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCCcCc----cCHHHHhccccCCe
Confidence 99884221 0146678999999999994 6643 23456778999999999999985 24566778999999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++++|.++... ...+..+++|+.|+|++|.++......+. .......++.++|+++.+++.+...++..+..++
T Consensus 203 L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 203 LILHMKQHILLL----EIFVDVTSSVECLELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEECSCSTTHH----HHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ecCCCCccccch----hhhhhhcccccEEECCCCccccccccccc-cccccchhhccccccccccCcchhhhHHHHhccc
Confidence 999999986322 12233469999999999999876554443 2346788999999999999999999999999999
Q ss_pred CCCEEeCCCCCCC
Q psy18075 704 MAAALVLEDDEGE 716 (999)
Q Consensus 704 ~L~~L~Ls~N~~e 716 (999)
+|+.|++++|.-.
T Consensus 278 ~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 278 GLLELEFSRNQLK 290 (353)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEECCCCCCC
Confidence 9999999998664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=175.84 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=132.7
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
.+++|++|+|++|.++..+ ..+..+.. ..+++|++|+|++|+|+..... .++..++|++|++++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~-~~~~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRD-AWLAELQQ-WLKPGLKVLSIAQAHSLNFSCE--------------QVRVFPALSTLDLSD 182 (312)
T ss_dssp CSCCCSEEEEESCBCSSSS-SHHHHHHT-TCCTTCCEEEEESCSCCCCCTT--------------TCCCCSSCCEEECCS
T ss_pred cCCCccEEEccCCCCcchh-HHHHHHHH-hhcCCCcEEEeeCCCCccchHH--------------HhccCCCCCEEECCC
Confidence 4578999999999997663 44444321 1235899999999988643322 233456799999999
Q ss_pred CCCCchhHHHHHHHH--hhcccccccccCCCccCchhhhhhh-HHhhhcccCceeeccCCCCCcCCcccccccccCCCCC
Q psy18075 545 NRLENEGAKMLAAVF--KKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621 (999)
Q Consensus 545 N~L~d~g~~~L~~~L--~~~~sLe~LdLs~N~It~~g~~~La-~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL 621 (999)
|++... ..+...+ ..+++|++|+|++|.|+..+ .+. ..+..+++|+.|+|++|.++.... ...+..+++|
T Consensus 183 N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L 255 (312)
T 1wwl_A 183 NPELGE--RGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQL 255 (312)
T ss_dssp CTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTC
T ss_pred CCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCC
Confidence 987632 2233334 67889999999999988432 233 334567899999999999886331 1233456789
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+.|+|++|.|+. ++..+. ++|+.|+|++|+|+.. + .+..+++|++|+|++|+|++.
T Consensus 256 ~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~-----p-~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRN-----P-SPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSC-----C-CTTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCC-----h-hHhhCCCCCEEeccCCCCCCC
Confidence 999999998872 333333 7899999999999863 2 266788999999999998764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-16 Score=168.03 Aligned_cols=237 Identities=22% Similarity=0.210 Sum_probs=172.4
Q ss_pred cEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHH
Q psy18075 376 TKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDAL 455 (999)
Q Consensus 376 ~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l 455 (999)
..++.+++++... +. ...++|++|+|++|.|+.....
T Consensus 14 ~~~~c~~~~l~~i--------p~--~~~~~l~~L~l~~n~i~~~~~~--------------------------------- 50 (285)
T 1ozn_A 14 VTTSCPQQGLQAV--------PV--GIPAASQRIFLHGNRISHVPAA--------------------------------- 50 (285)
T ss_dssp CEEECCSSCCSSC--------CT--TCCTTCSEEECTTSCCCEECTT---------------------------------
T ss_pred eEEEcCcCCcccC--------Cc--CCCCCceEEEeeCCcCCccCHH---------------------------------
Confidence 4577777777422 11 2246899999999998752111
Q ss_pred HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHHHHHhhhccCCcCCCCC
Q psy18075 456 RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSP 534 (999)
Q Consensus 456 ~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La~~L~~~~~~s~~~g~~ 534 (999)
.+..+++|++|+|++|.++......+. .+++|++|+|++|. ++...... ++..
T Consensus 51 ------~~~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~~l~~~~~~~--------------~~~l 104 (285)
T 1ozn_A 51 ------SFRACRNLTILWLHSNVLARIDAAAFT------GLALLEQLDLSDNAQLRSVDPAT--------------FHGL 104 (285)
T ss_dssp ------TTTTCTTCCEEECCSSCCCEECTTTTT------TCTTCCEEECCSCTTCCCCCTTT--------------TTTC
T ss_pred ------HcccCCCCCEEECCCCccceeCHhhcC------CccCCCEEeCCCCCCccccCHHH--------------hcCC
Confidence 112356899999999999876554442 35799999999997 76433222 2234
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|++++|++.... +..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|.++.- ....
T Consensus 105 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 172 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSV----PERA 172 (285)
T ss_dssp TTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEE----CTTT
T ss_pred cCCCEEECCCCcCCEEC----HhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCccccc----CHHH
Confidence 67999999999998643 334677899999999999998642 23466789999999999998841 2234
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHH
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVE 693 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~ 693 (999)
+..+++|+.|++++|.++... +..+..+++|+.|+|++|.|+.. ....+..+++|+.|+|++|++..+ ...
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred hcCccccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCCccCCCCcH
Confidence 677899999999999998553 45667789999999999999874 335577899999999999998643 233
Q ss_pred HHHHHHhc
Q psy18075 694 EMEKLMKS 701 (999)
Q Consensus 694 ~L~~~L~~ 701 (999)
.+...++.
T Consensus 245 ~~~~~l~~ 252 (285)
T 1ozn_A 245 PLWAWLQK 252 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34444444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-16 Score=186.58 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=31.5
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcc--cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCC
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLK--TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~--sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Ls 604 (999)
+|+.|++++|.+...... .+..++ +|++|+|++|.++... +..+..+++|+.|+|++|.+.
T Consensus 223 ~L~~L~L~~n~l~~~~~~----~~~~l~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNT----TFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCCEEECTTSCCCEECTT----TTGGGGGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBS
T ss_pred cccEEEccCCcccccChh----HhhccCcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccC
Confidence 455555555555443221 222232 3666666666665432 233445666666666666655
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-16 Score=181.35 Aligned_cols=207 Identities=22% Similarity=0.228 Sum_probs=125.1
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|.......| ..+++|++|+|++|+|+..... .++.+++|++|+|++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAF------NGLANLNTLELFDNRLTTIPNG--------------AFVYLSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGG------TTCSSCCEEECCSSCCSSCCTT--------------TSCSCSSCCEEECCSC
T ss_pred CCCCCEEECCCCcCCccChhhc------cCCccCCEEECCCCcCCeeCHh--------------HhhccccCceeeCCCC
Confidence 4577777777777766554444 2345777777777776532211 1223456777777777
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
+|..... ..|..+++|++|+|++|. ++... ...|..+++|+.|+|++|.++. ++ .+..+++|+.|
T Consensus 147 ~i~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 147 PIESIPS----YAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDEL 212 (440)
T ss_dssp CCCEECT----TTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEE
T ss_pred cccccCH----HHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEE
Confidence 7764321 234556777777777743 43321 1245556777777777777763 22 35566677777
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++
T Consensus 213 ~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~ 280 (440)
T 3zyj_A 213 DLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLP----HDLFTPLHH 280 (440)
T ss_dssp ECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCC----TTTTSSCTT
T ss_pred ECCCCccCccC----hhhhccCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccC----hhHhccccC
Confidence 77777776432 345556677777777777776532 234556677777777777776522 233456677
Q ss_pred CCEEeCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECS 718 (999)
Q Consensus 705 L~~L~Ls~N~~e~e 718 (999)
|+.|++++|....+
T Consensus 281 L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 281 LERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECCSSCEECS
T ss_pred CCEEEcCCCCccCC
Confidence 77777777765443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-16 Score=179.14 Aligned_cols=240 Identities=17% Similarity=0.191 Sum_probs=177.0
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... ...|..+++|+.|+|++|.|......
T Consensus 65 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~i~~~------------------------------- 106 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIK-------VNSFKHLRHLEILQLSRNHIRTIEIG------------------------------- 106 (440)
T ss_dssp TCSEEECCSCCCCEEC-------TTTTSSCSSCCEEECCSSCCCEECGG-------------------------------
T ss_pred CCcEEEccCCcCCeeC-------HHHhhCCCCCCEEECCCCcCCccChh-------------------------------
Confidence 6788999999884322 13467889999999999988652111
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+..+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+..... .++.
T Consensus 107 --------~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N~i~~~~~~--------------~~~~ 158 (440)
T 3zyj_A 107 --------AFNGLANLNTLELFDNRLTTIPNGAF------VYLSKLKELWLRNNPIESIPSY--------------AFNR 158 (440)
T ss_dssp --------GGTTCSSCCEEECCSSCCSSCCTTTS------CSCSSCCEEECCSCCCCEECTT--------------TTTT
T ss_pred --------hccCCccCCEEECCCCcCCeeCHhHh------hccccCceeeCCCCcccccCHH--------------Hhhh
Confidence 11135789999999999986654444 3457999999999998743221 2234
Q ss_pred CCCccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|+|++| .++.... ..|..+++|++|+|++|.|+.. + .+..+++|+.|+|++|.|+. ..+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~----~~~ 224 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISE----GAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSA----IRP 224 (440)
T ss_dssp CTTCCEEECCCCTTCCEECT----TTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCE----ECT
T ss_pred CcccCEeCCCCCCCcceeCc----chhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCc----cCh
Confidence 467999999985 4553221 2466789999999999999853 2 36778999999999999985 235
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG- 691 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg- 691 (999)
..+..+++|+.|+|++|.++... ..++..+++|+.|+|++|+|+... ...+..+++|+.|+|++|++.-+.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLP----HDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCC----TTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhccCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccC----hhHhccccCCCEEEcCCCCccCCCC
Confidence 67778999999999999998654 356777899999999999998643 334567899999999999986542
Q ss_pred HHHHHHHHhc
Q psy18075 692 VEEMEKLMKS 701 (999)
Q Consensus 692 ~~~L~~~L~~ 701 (999)
...+...++.
T Consensus 297 l~~l~~~~~~ 306 (440)
T 3zyj_A 297 ILWLSWWIKD 306 (440)
T ss_dssp THHHHHHHHT
T ss_pred chHHHHHHHh
Confidence 3344444443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-17 Score=180.34 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=113.3
Q ss_pred HhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 559 L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.++. ++..+..+++|+.|+|++|.+...
T Consensus 179 ~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~---- 244 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN---- 244 (328)
T ss_dssp EEESTTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----
T ss_pred hccCCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----
Confidence 3458899999999999983 56678889999999999999983 556788899999999999988643
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+..+++|+.|+|++|++.. .++..+..+++|++|+|++|.+.. .++..+..+++|+.+++..+...
T Consensus 245 ~p~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 245 YPPIFGGRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCTTCCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hHHHhcCCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHHHHH
Confidence 45667788999999999998765 355567889999999999998776 36778899999999999876443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-16 Score=186.25 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=68.5
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcC----Cccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK----GAIP 610 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~----G~~~ 610 (999)
++|+.|++++|++..... ..+..+++|++|+|++|.++.. .+..+..+++|+.|+|++|..... .+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp SCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred CCCCEEECCCCCcCccCc----ccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 349999999999885432 3466788999999999998864 234455667777777766543311 1111
Q ss_pred ccc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCC
Q psy18075 611 LGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 659 (999)
Q Consensus 611 L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I 659 (999)
+.. .+..+++|+.|++++|.++... ...+..+++|++|+|++|.+
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCBS
T ss_pred cChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCch
Confidence 111 3445666666666666665332 23344455666666665543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-16 Score=181.72 Aligned_cols=207 Identities=19% Similarity=0.228 Sum_probs=129.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|+......| ..+++|++|+|++|.|+..... .++.+++|++|+|++|
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAF------NGLASLNTLELFDNWLTVIPSG--------------AFEYLSKLRELWLRNN 157 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSSCCSBCCTT--------------TSSSCTTCCEEECCSC
T ss_pred CCCCCEEECCCCccCCcChhhc------cCcccCCEEECCCCcCCccChh--------------hhcccCCCCEEECCCC
Confidence 4577778888877765554434 2345778888887777632211 1223456778888877
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
+|.... ...|..+++|+.|+|++| .++... ...+..+++|+.|+|++|.++. ++ .+..+++|+.|
T Consensus 158 ~l~~~~----~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 158 PIESIP----SYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEEL 223 (452)
T ss_dssp CCCEEC----TTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEE
T ss_pred CcceeC----HhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccc-----cc-cccccccccEE
Confidence 776432 123555777777777774 344321 1245567777788887777763 22 35567777788
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++
T Consensus 224 ~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~ 291 (452)
T 3zyi_A 224 EMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLP----HDLFTPLRY 291 (452)
T ss_dssp ECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCC----TTSSTTCTT
T ss_pred ECcCCcCcccC----cccccCccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccC----hHHhccccC
Confidence 88777776432 345666677777888777776532 234566777778888777776521 233456677
Q ss_pred CCEEeCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECS 718 (999)
Q Consensus 705 L~~L~Ls~N~~e~e 718 (999)
|+.|++++|....+
T Consensus 292 L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 292 LVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECCSSCEECS
T ss_pred CCEEEccCCCcCCC
Confidence 77777777765443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=159.03 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=134.0
Q ss_pred HHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCC
Q psy18075 553 KMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 631 (999)
Q Consensus 553 ~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L 631 (999)
..+...+...++|++|+|++| .|++.|+..|+.+|..+.+|+.|+|++|.|++.|+..|+++|..+++|++|+|+.|.|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 357777788899999999986 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHhccCCCCCCEEEccCC---CCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 632 KSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 632 ~d~g~~~La~aL~~~~~L~~LdLs~N---~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++.|+..|+++|..+++|++|+|++| .|++.|+.++++++..+++|+.|+++.|.++. ...++.++..+..+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 99999999999999999999999865 78999999999999999999999999887654 34577777766544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-16 Score=179.08 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=171.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|++.... ...|..+++|+.|+|++|.|......
T Consensus 76 ~l~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~i~~~~~~------------------------------- 117 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQ-------ADTFRHLHHLEVLQLGRNSIRQIEVG------------------------------- 117 (452)
T ss_dssp TCSEEECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECTT-------------------------------
T ss_pred CccEEECcCCcCceEC-------HHHcCCCCCCCEEECCCCccCCcChh-------------------------------
Confidence 6788999999884221 23467889999999999988652111
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+..+++|+.|+|++|.|+......+ ..+++|++|+|++|.|+..... .++.
T Consensus 118 --------~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~--------------~~~~ 169 (452)
T 3zyi_A 118 --------AFNGLASLNTLELFDNWLTVIPSGAF------EYLSKLRELWLRNNPIESIPSY--------------AFNR 169 (452)
T ss_dssp --------TTTTCTTCCEEECCSSCCSBCCTTTS------SSCTTCCEEECCSCCCCEECTT--------------TTTT
T ss_pred --------hccCcccCCEEECCCCcCCccChhhh------cccCCCCEEECCCCCcceeCHh--------------HHhc
Confidence 11235689999999999986654434 2357999999999998733221 1234
Q ss_pred CCCccEEEccCC-CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N-~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.++|+.|++++| .++.... ..|..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.+.. ..+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~----~~~ 235 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISE----GAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHFPE----IRP 235 (452)
T ss_dssp CTTCCEEECCCCTTCCEECT----TTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTSCCSE----ECG
T ss_pred CCcccEEeCCCCCCccccCh----hhccCCCCCCEEECCCCccccc------ccccccccccEEECcCCcCcc----cCc
Confidence 467999999984 4553221 2466789999999999999853 246678999999999999985 335
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
..+..+++|+.|+|++|.++... ..++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++.-+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLP----HDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCC----TTSSTTCTTCCEEECCSSCEECS
T ss_pred ccccCccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccC----hHHhccccCCCEEEccCCCcCCC
Confidence 67788999999999999998544 355677899999999999998633 23456789999999999997654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=173.68 Aligned_cols=242 Identities=14% Similarity=0.101 Sum_probs=171.2
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCc
Q psy18075 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482 (999)
Q Consensus 403 ~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~ 482 (999)
...++.|.+.++.+++.....+...+. .++|++|+|++|.+...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~------------------------------------~~~L~~L~l~~n~l~~~ 106 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA------------------------------------YSRLKELTLEDLKITGT 106 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH------------------------------------HSCCCEEEEESCCCBSC
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc------------------------------------cCceeEEEeeCCEeccc
Confidence 456899999999998876665543222 24699999999999765
Q ss_pred cHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhc
Q psy18075 483 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 562 (999)
Q Consensus 483 gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~ 562 (999)
....+.. ..+++|++|+|++|.++......-...+. .+++|++|+|++|++.... +..+..+
T Consensus 107 ~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----------~~~~L~~L~Ls~n~l~~~~----~~~~~~l 168 (310)
T 4glp_A 107 MPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQW----------LKPGLKVLSIAQAHSPAFS----CEQVRAF 168 (310)
T ss_dssp CCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTT----------BCSCCCEEEEECCSSCCCC----TTSCCCC
T ss_pred hhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhh----------hccCCCEEEeeCCCcchhh----HHHhccC
Confidence 5433311 23469999999999998533211111111 2367999999999997532 3456678
Q ss_pred ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc-ccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA-LSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a-L~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
++|++|+|++|++...........+..+++|++|+|++|.++. +..++.. +..+++|++|+|++|.+++.. +.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p~ 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAAAGVQPHSLDLSHNSLRATV----NP 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHHHTCCCSSEECTTSCCCCCC----CS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHhcCCCCCEEECCCCCCCccc----hh
Confidence 9999999999997643222222334578999999999999973 2222222 356789999999999998543 22
Q ss_pred hccCC---CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 642 YLTDN---TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 642 aL~~~---~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+ ++|++|+|++|.|+. ++..+ .++|+.|+|++|.|+.. ..+..+++|+.|++++|.-.+
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLNRA------PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCCSC------CCTTSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCCCC------chhhhCCCccEEECcCCCCCC
Confidence 33344 799999999999984 23333 37999999999999862 125678999999999997644
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-16 Score=181.16 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=91.3
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhh-------------------------------hh
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI-------------------------------TA 582 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~-------------------------------~~ 582 (999)
+.+|+.|++++|.+.+.+...+...+..+++|+.|++++|.+...+- ..
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 34566666666666666665665555556666666666665433110 00
Q ss_pred hhHHhhhcccCceeeccCCCCCcCCcccccccc-cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 583 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 583 La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL-~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
+...+...++|+.|++++|.+. .++..+ ..+++|+.|++++|.++.... .-...+..+++|+.|+|++|+|+.
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~-----~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVF-----LVPCSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCC-----CCCHHHHHHCTTCCEEECCSSCCCHHHH-HHHTCTTSSTTCCEEECTTSCCCC
T ss_pred chhhhhhcccceEEEeccCccc-----cCCHHHHhcCccccEEEccCCccccccc-cchhhhhccccCcEEEccCCcccc
Confidence 1111222345555555555554 233333 346677777777777653211 001224455677777777777764
Q ss_pred cchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 662 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 662 ~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
. ......+..+++|++|+|++|.++. ++..+..+++|+.|++++|.-
T Consensus 376 ~--~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 376 M--QKTGEILLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp H--HHHHHHGGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCC
T ss_pred c--ccchhhhhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCc
Confidence 1 1122345667777777777777653 334455566677777776654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-16 Score=184.61 Aligned_cols=193 Identities=18% Similarity=0.117 Sum_probs=146.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|+.... + ..+++|++|+|++|.|+.... .++|+.|++++|
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l~~-------------------~~~L~~L~L~~N 109 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--L------ESLSTLRTLDLNNNYVQELLV-------------------GPSIETLHAANN 109 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--C------TTCTTCCEEECCSSEEEEEEE-------------------CTTCCEEECCSS
T ss_pred CCCCCEEEeeCCCCCCCcc--c------ccCCCCCEEEecCCcCCCCCC-------------------CCCcCEEECcCC
Confidence 5689999999999964432 2 345789999999998863221 145999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc-CCCCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS-KLPSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~-~l~sL~~L 624 (999)
+|+.... ..+++|+.|+|++|.|+.. .+..+..+++|+.|+|++|.++.. .+..+. .+++|+.|
T Consensus 110 ~l~~~~~-------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 110 NISRVSC-------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTLEHL 174 (487)
T ss_dssp CCCCEEE-------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTCCEE
T ss_pred cCCCCCc-------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc----ChHHHhhhCCcccEE
Confidence 9886432 2357899999999999864 234566788999999999999853 233333 57899999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.|+.. ..+..+++|+.|+|++|.|+.. +..+..+++|+.|+|++|.|+. ++..+..+++
T Consensus 175 ~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~ 238 (487)
T 3oja_A 175 NLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQN 238 (487)
T ss_dssp ECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTT
T ss_pred ecCCCccccc------cccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcc-----cchhhccCCC
Confidence 9999998743 2233578999999999999853 3346778999999999999985 4556778889
Q ss_pred CCEEeCCCCCCC
Q psy18075 705 AAALVLEDDEGE 716 (999)
Q Consensus 705 L~~L~Ls~N~~e 716 (999)
|+.|++++|...
T Consensus 239 L~~L~l~~N~l~ 250 (487)
T 3oja_A 239 LEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEcCCCCCc
Confidence 999999998765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-17 Score=201.67 Aligned_cols=291 Identities=17% Similarity=0.179 Sum_probs=165.8
Q ss_pred CccEEEeccCCCcCCChhhHHHH-HHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVI-VDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L-~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
.++.|++++|.... .+ +.++..+++|++|+|++|.|....... +..+++|+.+ ++..+++...+|
T Consensus 49 ~L~~LdLs~n~~~~-------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L---~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 49 QLQLLELGSQYTPL-------TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFEL---RLYFCGLSDAVL 114 (844)
T ss_dssp SCSEEEECTTCCCC-------EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCE---ECTTCCCSSCCS
T ss_pred cCeEEeCCCCCCcc-------ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEe---eCcCCCCCcccc
Confidence 56778887774310 11 234677788888888888877643332 2334454332 222333333333
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccH-HHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHh-hhcc----
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGV-EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH-DCYE---- 526 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv-~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~-~~~~---- 526 (999)
.. ..+..+++|++|+|++|.+..... ..+ ..+++|++|+|++|.++......+...-. ....
T Consensus 115 ~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 115 KD------GYFRNLKALTRLDLSKNQIRSLYLHPSF------GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp TT------CCCSSCSSCCEEEEESCCCCCCCCCGGG------GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred cC------ccccccCCCCEEECCCCcccccccchhH------hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 21 123346788888888888865432 122 23468888888888876554444443311 0000
Q ss_pred -------CCcCCCCC------CCccEEEccCCCCCchhHHHHHHHHh--------------------------------h
Q psy18075 527 -------SSKKEGSP------LALKVFIAGRNRLENEGAKMLAAVFK--------------------------------K 561 (999)
Q Consensus 527 -------~s~~~g~~------~sLk~L~Ls~N~L~d~g~~~L~~~L~--------------------------------~ 561 (999)
.+...+.. .+|+.|++++|+++......+...+. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 00111111 13778888877766544333322211 1
Q ss_pred --cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHH
Q psy18075 562 --LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 639 (999)
Q Consensus 562 --~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~L 639 (999)
.++|+.|+|++|.++.. .+..+..+++|+.|+|++|.+.. ..+.++..+++|+.|+|++|.++...
T Consensus 263 l~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~---- 330 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNLLGELY---- 330 (844)
T ss_dssp TTTSCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCE----ECTTTTTTCSSCCEEEEESCCCSCCC----
T ss_pred cccCCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCC----CChHHhcCCCCCCEEECCCCCCCccC----
Confidence 14677777777776643 23445566777777777777764 22345566777788888877775332
Q ss_pred HHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 640 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 640 a~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
+..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.++.- ..+++|+.|++++|.-
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDNALTTI---------HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEEEETCCSCCC---------SSCCSCSEEEEESCCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEECCCCCCCcc---------cCCCCcchhccCCCCc
Confidence 345566677888888888776532 22456677888888888877642 2255666666665543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-16 Score=175.59 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=155.3
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
..++|++|+|++|.++......+. ...+++|++|+|++|.|+.. ...+...... .+++|++|+|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~---------~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL----EATGPDLNILNLRNVSWATR-DAWLAELQQW---------LKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS----SCCSCCCSEEEEESCBCSSS-SSHHHHHHTT---------CCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccchhHHHHH----HhcCCCccEEEccCCCCcch-hHHHHHHHHh---------hcCCCcEEEeeC
Confidence 357999999999999754332220 02347999999999999865 3333332111 125699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHh--hhcccCceeeccCCCCCcCCccccc-ccccCCCCC
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF--EENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSL 621 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL--~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL 621 (999)
|+++... +..+..+++|++|+|++|.+... ..+...+ ..+++|++|+|++|.|+.. ..++ ..+..+++|
T Consensus 159 N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 159 AHSLNFS----CEQVRVFPALSTLDLSDNPELGE--RGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQL 230 (312)
T ss_dssp CSCCCCC----TTTCCCCSSCCEEECCSCTTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCC
T ss_pred CCCccch----HHHhccCCCCCEEECCCCCcCcc--hHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCC
Confidence 9998643 24567789999999999997642 1233333 6789999999999999832 1233 233567899
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhc
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~ 701 (999)
+.|++++|.++.... ...+...++|+.|+|++|.|+. ++..+. ++|++|+|++|+|+.. +. +..
T Consensus 231 ~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~-----p~-~~~ 294 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRN-----PS-PDE 294 (312)
T ss_dssp SEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSC-----CC-TTT
T ss_pred CEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCC-----hh-Hhh
Confidence 999999999986431 1233446899999999999984 333333 7899999999999873 22 778
Q ss_pred CCCCCEEeCCCCCCCC
Q psy18075 702 FGMAAALVLEDDEGEC 717 (999)
Q Consensus 702 l~~L~~L~Ls~N~~e~ 717 (999)
+++|+.|++++|.-.+
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 8999999999997654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=157.93 Aligned_cols=170 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.+..... + ..+++|++|+|++|.++... .+ +.+++|++|++++|
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~------~~l~~L~~L~L~~n~l~~~~------~~----------~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--L------KNLTKITELELSGNPLKNVS------AI----------AGLQSIKTLDLTST 117 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--G------TTCCSCCEEECCSCCCSCCG------GG----------TTCTTCCEEECTTS
T ss_pred cCCCCEEEccCCcCCCChh--H------ccCCCCCEEEccCCcCCCch------hh----------cCCCCCCEEECCCC
Confidence 4577888888887765543 2 23467888888888776421 11 22355888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+++... .+..+++|++|+|++|.|+... .+..+++|+.|+|++|.+++ +.. +..+++|+.|+
T Consensus 118 ~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 118 QITDVT------PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSD-----LTP-LANLSKLTTLK 179 (308)
T ss_dssp CCCCCG------GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEE
T ss_pred CCCCch------hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCC-----Chh-hcCCCCCCEEE
Confidence 877532 2566778888888888777532 15667778888888887764 222 56677888888
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+++|.+++... +..+++|++|+|++|+|++.. .+..+++|+.|+|++|+++.
T Consensus 180 l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCCEEEccCCeeec
Confidence 88887764321 556678888888888877532 25677788888888887755
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=158.95 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=147.7
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++++.|+|++|.|+......+. .+++|++|+|++|.|+.... .+..++|+.|++++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~----------------~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQV----------------DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEEC----------------CSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcccC----------------CCCCCcCCEEECCCCc
Confidence 4789999999999876655553 34689999999999874321 1245679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+. ++..+..+++|++|+|++|+|+... +..|..+++|+.|+|++|.|+. .....+..+++|+.|+|
T Consensus 89 l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 89 LQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKT----LPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEEC
T ss_pred CCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCc----cChhhcccccCCCEEEC
Confidence 873 3445667889999999999998542 2456778999999999999884 22344567889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~l~~L 705 (999)
++|.|+... ...+..+++|+.|+|++|+|+. ++..+..+++|+.|+|++|++... +...+...+..++..
T Consensus 156 ~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~ 226 (290)
T 1p9a_G 156 ANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226 (290)
T ss_dssp TTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred CCCcCCccC----HHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence 999997432 2345667999999999999984 455666778999999999998643 445666777766543
Q ss_pred C
Q psy18075 706 A 706 (999)
Q Consensus 706 ~ 706 (999)
.
T Consensus 227 ~ 227 (290)
T 1p9a_G 227 V 227 (290)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-15 Score=189.82 Aligned_cols=287 Identities=18% Similarity=0.173 Sum_probs=163.6
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+.... +..+..+++|++|+|++|.+..... ..++..+++|+.+ ++..+++....|.
T Consensus 25 ~l~~LdLs~N~i~~i~-------~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L---~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVT-------ASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRIL---DLGSSKIYFLHPD 91 (844)
T ss_dssp TCCEEEEESCCCCEEC-------SSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEE---ECTTCCCCEECTT
T ss_pred CcCEEECCCCcCCccC-------hhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEE---ECCCCcCcccCHh
Confidence 7889999999984221 2347889999999999995432210 1223445555433 3333444444444
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
.+ ..+++|++|+|++|.+....... ..+ ..+++|++|+|++|.++.... ...+ +.
T Consensus 92 ~~--------~~l~~L~~L~Ls~n~l~~~~~~~--~~~--~~L~~L~~L~Ls~N~l~~~~~---~~~~----------~~ 146 (844)
T 3j0a_A 92 AF--------QGLFHLFELRLYFCGLSDAVLKD--GYF--RNLKALTRLDLSKNQIRSLYL---HPSF----------GK 146 (844)
T ss_dssp SS--------CSCSSCCCEECTTCCCSSCCSTT--CCC--SSCSSCCEEEEESCCCCCCCC---CGGG----------GT
T ss_pred Hc--------cCCcccCEeeCcCCCCCcccccC--ccc--cccCCCCEEECCCCccccccc---chhH----------hh
Confidence 33 34679999999999997533221 001 345799999999999864321 1112 23
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc------------------------------hhhhhh
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH------------------------------VGITAL 583 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~------------------------------~g~~~L 583 (999)
+++|++|+|++|.+.......+... . .++|+.|+|++|.++. .....+
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 4679999999998876433333221 1 1445555555444443 222222
Q ss_pred hHHhh--------------------------------h--cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCC
Q psy18075 584 SDAFE--------------------------------E--NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 629 (999)
Q Consensus 584 a~aL~--------------------------------~--~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N 629 (999)
...+. . .++|+.|+|++|.+.. ..+..+..+++|+.|+|++|
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc----cChhhhhcCCCCCEEECCCC
Confidence 21110 0 1345555555555542 12334455666666666666
Q ss_pred CCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEe
Q psy18075 630 LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV 709 (999)
Q Consensus 630 ~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~ 709 (999)
.++... +.++..+++|+.|+|++|.++.. ....+..+++|+.|+|++|.|+... ...+..+++|+.|+
T Consensus 301 ~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 301 KINKIA----DEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCEEC----TTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEE
T ss_pred cCCCCC----hHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEE
Confidence 665332 23455566777777777766542 1234556677777777777765522 22356677777777
Q ss_pred CCCCCCC
Q psy18075 710 LEDDEGE 716 (999)
Q Consensus 710 Ls~N~~e 716 (999)
+++|.-.
T Consensus 369 Ls~N~l~ 375 (844)
T 3j0a_A 369 LRDNALT 375 (844)
T ss_dssp EETCCSC
T ss_pred CCCCCCC
Confidence 7777544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-15 Score=163.54 Aligned_cols=198 Identities=21% Similarity=0.203 Sum_probs=119.8
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|+|++|.++......+ ..+++|++|+|++|.++...... ++..++|++|++++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAY------QSLSHLSTLILTGNPIQSLALGA--------------FSGLSSLQKLVAVET 110 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTT------TTCTTCCEEECTTCCCCEECTTT--------------TTTCTTCCEEECTTS
T ss_pred ccCCcEEECCCCcCCccCHHHc------cCCcCCCEEECCCCccCccChhh--------------hcCCccccEEECCCC
Confidence 4578888888888765544333 23467888888888776332211 223356888888888
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCc-EE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA-IL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~-~L 624 (999)
++...... .+..+++|++|+|++|.|+..+ ++..+..+++|++|+|++|.++......+. .+..++.|. .|
T Consensus 111 ~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L 182 (276)
T 2z62_A 111 NLASLENF----PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSL 182 (276)
T ss_dssp CCCCSTTC----CCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEE
T ss_pred CccccCch----hcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceee
Confidence 77643221 2555777888888888776532 345666677888888888877643222221 122333333 77
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHHHHHHHh
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKLMK 700 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~L~~~L~ 700 (999)
++++|.++... .......+|+.|+|++|.|+... ...+..+++|+.|+|++|++.... ...+..++.
T Consensus 183 ~ls~n~l~~~~-----~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 183 DLSLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp ECCSSCCCEEC-----TTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ecCCCcccccC-----ccccCCCcccEEECCCCceeecC----HhHhcccccccEEEccCCcccccCCchHHHHHHHH
Confidence 88888776432 22223357888888888777532 233456778888888888776532 334444443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=156.67 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=154.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|++++|.+.... .+ ..+++|++|+|++|.++.... +. .+++|++|++++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~------~~l~~L~~L~L~~n~i~~~~~------~~----------~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GV------QYLNNLIGLELKDNQITDLAP------LK----------NLTKITELELSGNP 96 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG------GT----------TCCSCCEEECCSCC
T ss_pred CCcCEEEeeCCCccCch--hh------hccCCCCEEEccCCcCCCChh------Hc----------cCCCCCEEEccCCc
Confidence 58999999999997643 22 235799999999999975332 22 23679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.. ..+..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.++.. .. +..+++|+.|++
T Consensus 97 l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 97 LKNV------SAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCC------GGGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEEC
T ss_pred CCCc------hhhcCCCCCCEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEc
Confidence 9863 2477789999999999999863 2377899999999999999842 22 667899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.+++.. . +..+++|+.|+|++|.|+.... +..+++|++|+|++|.++... .+..+++|+
T Consensus 159 ~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~ 220 (308)
T 1h6u_A 159 GNAQVSDLT-----P-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLF 220 (308)
T ss_dssp CSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCC
T ss_pred cCCcCCCCh-----h-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCC
Confidence 999998532 2 6778999999999999987432 678999999999999998743 378899999
Q ss_pred EEeCCCCCCCC
Q psy18075 707 ALVLEDDEGEC 717 (999)
Q Consensus 707 ~L~Ls~N~~e~ 717 (999)
.|++++|.-..
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999886543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-15 Score=159.89 Aligned_cols=212 Identities=19% Similarity=0.215 Sum_probs=159.2
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.++..+...+. .+++|++|+|++|.++...... ++..++|++|++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~--------------~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF------SFPELQVLDLSRCEIQTIEDGA--------------YQSLSHLSTLILTGNP 87 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT------TCTTCSEEECTTCCCCEECTTT--------------TTTCTTCCEEECTTCC
T ss_pred CCccEEECCCCcccccCHhHhc------cccCCcEEECCCCcCCccCHHH--------------ccCCcCCCEEECCCCc
Confidence 4799999999999877654442 3479999999999987433222 2234679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.... ..+..+++|++|++++|.++.... ..+..+++|++|+|++|.++..+ ++..+..+++|+.|++
T Consensus 88 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 88 IQSLAL----GAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCEECT----TTTTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEEC
T ss_pred cCccCh----hhhcCCccccEEECCCCCccccCc----hhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEEC
Confidence 986432 346678999999999999986432 24667899999999999998532 4567778999999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCC-EEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~-~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.++......+.. +...+.|. .|++++|.|+... .......+|+.|+|++|.++... ...+..+++|
T Consensus 157 s~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~~~-----~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L 226 (276)
T 2z62_A 157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSL 226 (276)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCEEC-----TTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSC
T ss_pred CCCCCCcCCHHHhhh-hhhccccceeeecCCCcccccC-----ccccCCCcccEEECCCCceeecC----HhHhcccccc
Confidence 999998765433433 33344444 8999999998632 22234458999999999998632 2346789999
Q ss_pred CEEeCCCCCCCCCC
Q psy18075 706 AALVLEDDEGECSD 719 (999)
Q Consensus 706 ~~L~Ls~N~~e~ed 719 (999)
+.|++++|.-..+-
T Consensus 227 ~~L~l~~N~~~c~c 240 (276)
T 2z62_A 227 QKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCcccccC
Confidence 99999999876544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=159.78 Aligned_cols=204 Identities=19% Similarity=0.121 Sum_probs=159.6
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
..++++++++++|.++..... + .++|+.|+|++|.|+......+. ..++|+.|+|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~--------~~~l~~L~L~~N~l~~~~~~~~~--------------~l~~L~~L~L~~ 64 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-L--------PKDTTILHLSENLLYTFSLATLM--------------PYTRLTQLNLDR 64 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-C--------CTTCCEEECTTSCCSEEEGGGGT--------------TCTTCCEEECTT
T ss_pred ccCCccEEECCCCCCCcCCCC-C--------CCCCCEEEcCCCcCCccCHHHhh--------------cCCCCCEEECCC
Confidence 457899999999999765421 1 14899999999999754332222 236799999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|.|+.... ...+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+.- .+..+..+++|+.|
T Consensus 65 n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 65 AELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQEL 129 (290)
T ss_dssp SCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEE
T ss_pred CccCcccC------CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEE
Confidence 99986432 1467899999999999983 556677889999999999999842 23567788999999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 704 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~ 704 (999)
+|++|.++... +..+..+++|+.|+|++|+|+.-. ...+..+++|+.|+|++|.|+. ++..+..+..
T Consensus 130 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~ 196 (290)
T 1p9a_G 130 YLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHL 196 (290)
T ss_dssp ECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCC
T ss_pred ECCCCCCCccC----hhhcccccCCCEEECCCCcCCccC----HHHhcCcCCCCEEECCCCcCCc-----cChhhccccc
Confidence 99999998432 345667799999999999998632 2345678999999999999985 5566677889
Q ss_pred CCEEeCCCCCCCCCC
Q psy18075 705 AAALVLEDDEGECSD 719 (999)
Q Consensus 705 L~~L~Ls~N~~e~ed 719 (999)
|+.|++++|....+.
T Consensus 197 L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSEEECCSCCBCCSG
T ss_pred CCeEEeCCCCccCcC
Confidence 999999999886654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-14 Score=163.10 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=23.2
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCCh
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGV 418 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~ 418 (999)
.++.|+++++.+.-. + .+..+++|++|+|++|.|..
T Consensus 43 ~L~~L~Ls~n~l~~~--------~-~l~~l~~L~~L~Ls~n~l~~ 78 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM--------T-GIEKLTGLTKLICTSNNITT 78 (457)
T ss_dssp TCCEEECCSSCCCCC--------T-TGGGCTTCSEEECCSSCCSC
T ss_pred CCCEEEccCCCcccC--------h-hhcccCCCCEEEccCCcCCe
Confidence 456677777776311 1 35667777777777777655
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=162.98 Aligned_cols=226 Identities=17% Similarity=0.155 Sum_probs=134.9
Q ss_pred HhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCC
Q psy18075 400 INEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAF 479 (999)
Q Consensus 400 L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L 479 (999)
+..+++|++|+|++|.|.... .+..+++|+.+ ++..+++.. +| +..+++|++|+|++|.|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L---~Ls~n~l~~-~~----------~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT------GIEKLTGLTKL---ICTSNNITT-LD----------LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT------TGGGCTTCSEE---ECCSSCCSC-CC----------CTTCTTCSEEECCSSCC
T ss_pred hhHcCCCCEEEccCCCcccCh------hhcccCCCCEE---EccCCcCCe-Ec----------cccCCCCCEEECcCCCC
Confidence 455689999999999998631 23344444332 222222221 11 22356777777777777
Q ss_pred CCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHH
Q psy18075 480 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 559 (999)
Q Consensus 480 ~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L 559 (999)
+... + ..+++|++|+|++|.++... ++..++|++|++++|+++.. .+
T Consensus 98 ~~~~---~------~~l~~L~~L~L~~N~l~~l~-----------------~~~l~~L~~L~l~~N~l~~l-------~l 144 (457)
T 3bz5_A 98 TNLD---V------TPLTKLTYLNCDTNKLTKLD-----------------VSQNPLLTYLNCARNTLTEI-------DV 144 (457)
T ss_dssp SCCC---C------TTCTTCCEEECCSSCCSCCC-----------------CTTCTTCCEEECTTSCCSCC-------CC
T ss_pred ceee---c------CCCCcCCEEECCCCcCCeec-----------------CCCCCcCCEEECCCCcccee-------cc
Confidence 6543 1 23456777777777765321 12235577777777777642 14
Q ss_pred hhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 560 KKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
..+++|++|++++|. ++.. .+..+++|+.|+|++|.++. +. +..+++|+.|++++|.++..
T Consensus 145 ~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~---- 206 (457)
T 3bz5_A 145 SHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKL---- 206 (457)
T ss_dssp TTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCC----
T ss_pred ccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce-----ec--cccCCCCCEEECcCCcCCee----
Confidence 556677777777773 3322 24456677777777777763 22 45667777777777777642
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
.+..+++|+.|++++|+++.- + +..+++|+.|++++|.++... +..+++|+.|+++.+
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQT 264 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTC
T ss_pred ---ccccCCCCCEEECcCCccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCC
Confidence 255567777777777777652 1 556777777777777776531 344556666655544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=152.15 Aligned_cols=194 Identities=24% Similarity=0.266 Sum_probs=136.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.|+......+ ..+++|++|+|++|.|+...... ++..++|++|++++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~i~~~~--------------~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF------HRLTKLRLLYLNDNKLQTLPAGI--------------FKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS------SSCTTCCEEECCSSCCSCCCTTT--------------TSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHh------cCCCCCCEEECCCCccCeeChhh--------------hcCCCCCCEEECCCCc
Confidence 478899999999876654434 33578999999999886322111 1234669999999998
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+..... ..+..+++|++|+|++|.|+... +..+..+++|++|+|++|.+..- ....+..+++|+.|+|
T Consensus 97 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 97 LQALPI----GVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCCCCT----TTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred CCcCCH----hHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCcc----CHhHccCCcccceeEe
Confidence 875332 24566788999999999887643 33456788899999999988742 2234567889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHh
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 700 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~ 700 (999)
++|.++.... ..+..+++|++|+|++|.|+... ...+..+++|+.|+|++|++... +...+...+.
T Consensus 165 ~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 165 YNNQLKRVPE----GAFDKLTELKTLKLDNNQLKRVP----EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CSSCCSCCCT----TTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred cCCcCcEeCh----hHhccCCCcCEEECCCCcCCcCC----HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 9998875432 34666788999999999887633 23456788899999999987654 2344444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=153.80 Aligned_cols=206 Identities=23% Similarity=0.282 Sum_probs=157.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
..++.++++++.++..... + .++|++|+|++|+|+..... .++..++|++|++++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--------~~~l~~L~l~~n~l~~~~~~--------------~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--------PADTKKLDLQSNKLSSLPSK--------------AFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--------CTTCSEEECCSSCCSCCCTT--------------SSSSCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCCCccCCC-C--------CCCCCEEECcCCCCCeeCHH--------------HhcCCCCCCEEECCCCc
Confidence 3578999999999765421 1 14799999999998743321 23345779999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++... ...+..+++|++|+|++|.|+... ...+..+++|++|+|++|.+... ....+..+++|+.|+|
T Consensus 73 l~~i~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 73 LQTLP----AGIFKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSL 140 (270)
T ss_dssp CSCCC----TTTTSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred cCeeC----hhhhcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEEC
Confidence 87432 223566899999999999998643 23556789999999999999852 2345677899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.++... ...+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.|+... ...+..+++|+
T Consensus 141 s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~ 208 (270)
T 2o6q_A 141 GYNELQSLP----KGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDNNQLKRVP----EGAFDSLEKLK 208 (270)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCC
T ss_pred CCCcCCccC----HhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCCCcCCcCC----HHHhccccCCC
Confidence 999998543 2346678999999999999987432 34677899999999999998632 23567889999
Q ss_pred EEeCCCCCCCCCC
Q psy18075 707 ALVLEDDEGECSD 719 (999)
Q Consensus 707 ~L~Ls~N~~e~ed 719 (999)
.|++++|....+.
T Consensus 209 ~L~l~~N~~~c~c 221 (270)
T 2o6q_A 209 MLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCBCCSS
T ss_pred EEEecCCCeeCCC
Confidence 9999999866544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=167.63 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred HHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 585 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 585 ~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
..+..+++|+.|++++|.+. .++..+..+ +|+.|++++|.++.... ..+++|+.|++++|.+.....
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~~-~L~~L~l~~n~~~~l~~-------~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIE-----RVKDFSYNF-GWQHLELVNCKFGQFPT-------LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TTTGGGTTCSEEEEESCEEC-----SCCBCCSCC-CCSEEEEESCBCSSCCB-------CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhcCcCcccEEEecCccch-----hhhhhhccC-CccEEeeccCcccccCc-------ccccccCEEeCcCCccccccc
Confidence 34455677777777777765 244445555 67777777776652211 123455555555554443211
Q ss_pred hhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 665 ~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
...+++|+.|++++|.++..+. +...+..+++|+.|++++|
T Consensus 343 ------~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 343 ------EVDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp ------CCBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSC
T ss_pred ------cccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCC
Confidence 0344555555555555543210 1122344455555555544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=173.40 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=73.3
Q ss_pred ccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 611 L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
++..+..+++|+.|+|++|.|+.. .+..+..+++|+.|+|++|+|+.-. ...+..+++|++|+|++|+|+..
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l----~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTSCCCBC
T ss_pred CchhhhhccccCEEECCCCccCCc----ChHHHcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCCcCCCC
Confidence 345667788999999999988743 2456777889999999999887632 33567788999999999998763
Q ss_pred cHHHHHHHHhcC-CCCCEEeCCCCCCCCCCc
Q psy18075 691 GVEEMEKLMKSF-GMAAALVLEDDEGECSDE 720 (999)
Q Consensus 691 g~~~L~~~L~~l-~~L~~L~Ls~N~~e~edE 720 (999)
....+..+ ++|+.|++++|....+-+
T Consensus 558 ----~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 558 ----KKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ----CSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ----CHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 23345555 579999999998877654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=163.36 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=58.7
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|+.|++++|+|+.-. . ..++|+.|++++|.|+.. +. ..++|+.|+|++|.|+. ++
T Consensus 181 ~~L~~L~Ls~N~l~~l~-----~---~~~~L~~L~L~~N~l~~l-----~~---~~~~L~~L~Ls~N~L~~-----lp-- 237 (622)
T 3g06_A 181 SGLQELSVSDNQLASLP-----T---LPSELYKLWAYNNRLTSL-----PA---LPSGLKELIVSGNRLTS-----LP-- 237 (622)
T ss_dssp TTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSC-----CC--
T ss_pred CCCcEEECCCCCCCCCC-----C---ccchhhEEECcCCccccc-----CC---CCCCCCEEEccCCccCc-----CC--
Confidence 34555555555554210 0 124555555555555531 11 12456666666665552 22
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
..+++|+.|+|++|.|+.. +. ..++|+.|+|++|.|+. ++..+..+++|+.|+|++|+++..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~l-----p~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSL-----PM---LPSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHH
T ss_pred -CCCCcCcEEECCCCCCCcC-----Cc---ccccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCc
Confidence 2334566666666655421 11 23556666666665552 233455556666666666666553
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=163.43 Aligned_cols=266 Identities=16% Similarity=0.155 Sum_probs=175.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.+++++|.. ...........+...+.|+.|+|+++.+.......+...+. .++++.+. +..+++.+.+|.
T Consensus 222 ~L~~L~l~~n~~---~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~---l~~n~l~~~ip~ 294 (562)
T 3a79_B 222 HLQLSNIKLNDE---NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLN---IYNLTITERIDR 294 (562)
T ss_dssp EEEEEEEECCST---THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEE---EEEEEECSCCCC
T ss_pred eEEEeccccccc---ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEE---EeccEeeccccc
Confidence 345566666543 23344455566777788888888887777766665555443 22332221 111122222222
Q ss_pred HH-------------------------HHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc
Q psy18075 454 AL-------------------------RYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508 (999)
Q Consensus 454 ~l-------------------------~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~ 508 (999)
.+ ..+...+ ...+|+.|++++|.+.+.... ..+++|++|+|++|.
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF--AEMNIKMLSISDTPFIHMVCP--------PSPSSFTFLNFTQNV 364 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH--HTCCCSEEEEESSCCCCCCCC--------SSCCCCCEEECCSSC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhh--ccCcceEEEccCCCcccccCc--------cCCCCceEEECCCCc
Confidence 11 1111111 124688888888887654310 235789999999999
Q ss_pred cCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhh
Q psy18075 509 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 588 (999)
Q Consensus 509 Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~ 588 (999)
++..... .++..++|+.|++++|+++.- ..++..+..+++|++|+|++|.|+...- ...+.
T Consensus 365 l~~~~~~--------------~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~ 425 (562)
T 3a79_B 365 FTDSVFQ--------------GCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCA 425 (562)
T ss_dssp CCTTTTT--------------TCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCC
T ss_pred cccchhh--------------hhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccC---hhhhc
Confidence 8742221 223457799999999999853 2355667889999999999999986211 12355
Q ss_pred hcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHH
Q psy18075 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 668 (999)
Q Consensus 589 ~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~ 668 (999)
.+++|+.|+|++|.+++. ++..+. ++|+.|+|++|.++. ++..+..+++|+.|+|++|+|+.-...
T Consensus 426 ~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~~l~~~--- 491 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLKSVPDG--- 491 (562)
T ss_dssp CCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCCCCCTT---
T ss_pred CcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCCCCCHH---
Confidence 678999999999999752 333332 699999999999972 455566779999999999999853221
Q ss_pred HhhccCCCcCEEEccCCCCChh
Q psy18075 669 KAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 669 ~~L~~~~sL~~LdLs~N~Is~e 690 (999)
.+..+++|+.|+|++|++...
T Consensus 492 -~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 492 -VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -STTTCTTCCCEECCSCCBCCC
T ss_pred -HHhcCCCCCEEEecCCCcCCC
Confidence 377899999999999999764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=146.58 Aligned_cols=171 Identities=22% Similarity=0.291 Sum_probs=133.0
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|++++|.+.... .+ ..+++|++|+|++|+++.... +. .+++|+.|++++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~--~~------~~l~~L~~L~L~~n~l~~~~~------l~----------~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP------LA----------NLKNLGWLFLDENK 101 (291)
T ss_dssp HTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG------GT----------TCTTCCEEECCSSC
T ss_pred CcccEEEccCCCcccCh--hH------hcCCCCCEEEccCCccCCCcc------cc----------cCCCCCEEECCCCc
Confidence 57999999999987653 22 235789999999999874322 22 23569999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
++.- ..+..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.++. + ..+..+++|+.|++
T Consensus 102 l~~~------~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 102 VKDL------SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSL 163 (291)
T ss_dssp CCCG------GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEEC
T ss_pred CCCC------hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCc-----c-hhhccCCCCCEEEc
Confidence 8862 2377789999999999998863 356678999999999999884 2 45677889999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
++|.+++... +..+++|+.|+|++|.|++- ..+..+++|+.|++++|+++..+
T Consensus 164 ~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l------~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 164 EDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCccccchh------hcCCCccCEEECCCCcCCCC------hhhccCCCCCEEECcCCcccCCc
Confidence 9999875431 67789999999999999863 24678899999999999887643
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=144.73 Aligned_cols=193 Identities=20% Similarity=0.242 Sum_probs=143.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
...++++++++.++..... + .++|+.|+|++|+|+......+ +..++|++|+|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--------~~~l~~L~L~~n~l~~~~~~~~--------------~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--------PADTEKLDLQSTGLATLSDATF--------------RGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--------CTTCCEEECTTSCCCCCCTTTT--------------TTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCccccCCC-C--------CCCCCEEEccCCCcCccCHhHh--------------cCcccCCEEECCCCc
Confidence 4678899999998755421 1 1479999999999875443222 234679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+... +..|..+++|++|+|++|.|+... ...+..+++|++|+|++|.|+. .....+..+++|+.|+|
T Consensus 71 l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 71 LQTLS----AGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRL 138 (251)
T ss_dssp CCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEEC
T ss_pred CCccC----HhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCC----cChhHhccCCcccEEEC
Confidence 98643 234667899999999999998542 3456678999999999999984 12234567899999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHhcC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSF 702 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l 702 (999)
++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++... ....+...+...
T Consensus 139 s~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 139 NTNQLQSIP----AGAFDKLTNLQTLSLSTNQLQSVP----HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcCCccC----HHHcCcCcCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 999997433 245677899999999999998632 24567889999999999999765 344455555543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=152.90 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=155.5
Q ss_pred cccEEEecCCCCC-Ccc---HHHHHHHHhccCCCCccEEEccCCccCchh-----hhHHHHHHhhhccCCcCCCCCCCcc
Q psy18075 468 RLVELDLSDNAFG-PIG---VEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALK 538 (999)
Q Consensus 468 sL~~LdLS~N~L~-~~g---v~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g-----~~~La~~L~~~~~~s~~~g~~~sLk 538 (999)
.++.|.+....+. ... +..+...+. ..++|+.|.+....+.... ...+...+..+ ++|+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~----------P~L~ 175 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM----------PLLN 175 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC----------TTCC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHhcC----------CCCc
Confidence 5677777765543 121 223322221 2358888888664332111 11244554443 5699
Q ss_pred EEEccCCC-CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccC--C-CCCcCCccccccc
Q psy18075 539 VFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND--N-TITYKGAIPLGQA 614 (999)
Q Consensus 539 ~L~Ls~N~-L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~--N-~Lsd~G~~~L~~a 614 (999)
.|.|++|. +. +.. + .+++|++|+|..|.|+..++..++. ..+|+|+.|+|+. | ..++.++..++..
T Consensus 176 ~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 176 NLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp EEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred EEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 99998773 22 111 2 2689999999999999887766653 2578999999863 2 2344456566665
Q ss_pred cc--CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcH
Q psy18075 615 LS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 692 (999)
Q Consensus 615 L~--~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~ 692 (999)
+. .+++|+.|+|.+|.+++.++..++.+ ..+++|++|+|++|.|++.|+..++..+..+++|+.|+|++|.|+++|+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 54 57899999999999998887777765 4569999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEeCCCCC
Q psy18075 693 EEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 693 ~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
..|..++ ...++++++.
T Consensus 325 ~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC-----CSEEECCSBC
T ss_pred HHHHHHc-----CCEEEecCCc
Confidence 9998875 4557887765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=145.87 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=130.1
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
.++|+.|++++|.+.... .+ ..+++|++|+|++|.++.. . .+. .+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l------~~l~~L~~L~l~~n~l~~~--~----~l~----------~l~~L~~L~L~~n 95 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GI------QYLPNVRYLALGGNKLHDI--S----ALK----------ELTNLTYLILTGN 95 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TG------GGCTTCCEEECTTSCCCCC--G----GGT----------TCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCccccc--cc------ccCCCCcEEECCCCCCCCc--h----hhc----------CCCCCCEEECCCC
Confidence 468999999999886543 12 2357899999999988742 1 222 3356999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.- ....+..+++|+.|+
T Consensus 96 ~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 96 QLQSLP----NGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELD 163 (272)
T ss_dssp CCCCCC----TTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEE
T ss_pred ccCccC----hhHhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCcc----CHHHhccCccCCEEE
Confidence 887532 22356678899999999988853 233466788899999999988742 233456788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++..
T Consensus 164 l~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 164 LSYNQLQSLP----EGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcCccC----HHHhcCCccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccCCCccc
Confidence 9999887433 244566789999999999888632 2446678899999999998764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=143.60 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=107.9
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
++|+.|++++|.++.... +.. +++|++|++++|++.+. ..+..+++|++|+|++|.|+
T Consensus 41 ~~L~~L~l~~~~i~~~~~------l~~----------l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG------IQY----------LPNVRYLALGGNKLHDI------SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp TTCCEEECTTSCCCCCTT------GGG----------CTTCCEEECTTSCCCCC------GGGTTCTTCCEEECTTSCCC
T ss_pred cceeeeeeCCCCcccccc------ccc----------CCCCcEEECCCCCCCCc------hhhcCCCCCCEEECCCCccC
Confidence 467777777777653221 111 24577777777777642 24556677777777777776
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.. ....+..+++|++|+|++|.++. .....+..+++|+.|++++|.++... ...+..+++|+.|+|++
T Consensus 99 ~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 99 SL----PNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CC----CTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred cc----ChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccC----HHHhccCccCCEEECCC
Confidence 43 12334556777777777777663 12233456677777777777766332 23345567777777777
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|.|+... ...+..+++|+.|+|++|.++.. ....+..+++|+.|++++|....
T Consensus 167 n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 167 NQLQSLP----EGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp SCCCCCC----TTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCccC----HHHhcCCccCCEEECCCCcCCcc----CHHHHhCCcCCCEEEccCCCccc
Confidence 7776422 22345667777777777777652 12345666777777777765443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=142.06 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=146.3
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
+..+.+..+.+.+... +.. +++|+.|++++|+++... . +.. +++|+.|++++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~------l~~L~~L~l~~~~i~~~~--~----~~~----------l~~L~~L~L~~n~l~ 81 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNE------LNSIDQIIANNSDIKSVQ--G----IQY----------LPNVTKLFLNGNKLT 81 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHH------HHTCCEEECTTSCCCCCT--T----GGG----------CTTCCEEECCSSCCC
T ss_pred HHHHHhcCCCcccccc--hhh------cCcccEEEccCCCcccCh--h----Hhc----------CCCCCEEEccCCccC
Confidence 3344556666654321 222 258999999999987432 1 222 356999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
+... +..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.+++ + ..+..+++|+.|++++
T Consensus 82 ~~~~------l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 82 DIKP------LANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCG------GGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCS
T ss_pred CCcc------cccCCCCCEEECCCCcCCCC------hhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccC
Confidence 6432 77799999999999999863 247789999999999999985 2 3567789999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEE
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L 708 (999)
|.++.. ..+..+++|+.|+|++|.|++... +..+++|+.|+|++|.|+.- ..+..+++|+.|
T Consensus 144 n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l------~~l~~l~~L~~L 205 (291)
T 1h6t_A 144 NKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVL 205 (291)
T ss_dssp SCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEE
T ss_pred CcCCcc------hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCC------hhhccCCCCCEE
Confidence 999853 457778999999999999987432 77899999999999999873 247889999999
Q ss_pred eCCCCCCC
Q psy18075 709 VLEDDEGE 716 (999)
Q Consensus 709 ~Ls~N~~e 716 (999)
++++|.-.
T Consensus 206 ~l~~n~i~ 213 (291)
T 1h6t_A 206 ELFSQECL 213 (291)
T ss_dssp EEEEEEEE
T ss_pred ECcCCccc
Confidence 99988543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=153.94 Aligned_cols=236 Identities=18% Similarity=0.166 Sum_probs=166.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|.+..... .+++|++|+|++|.|+.- .. ..++|+.+ ++..+.+. .+|.
T Consensus 62 ~L~~L~L~~N~l~~lp~-----------~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L---~Ls~N~l~-~l~~ 118 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA-----------LPPELRTLEVSGNQLTSL-----PV---LPPGLLEL---SIFSNPLT-HLPA 118 (622)
T ss_dssp TCSEEEECSCCCSCCCC-----------CCTTCCEEEECSCCCSCC-----CC---CCTTCCEE---EECSCCCC-CCCC
T ss_pred CCcEEEecCCCCCCCCC-----------cCCCCCEEEcCCCcCCcC-----CC---CCCCCCEE---ECcCCcCC-CCCC
Confidence 56677777777642111 346677777777776531 11 22333222 12222221 1222
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
..++|+.|+|++|.|+.... .+++|++|+|++|.|+... ..
T Consensus 119 -----------~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~l~------------------~~ 159 (622)
T 3g06_A 119 -----------LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLP------------------AL 159 (622)
T ss_dssp -----------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSCCC------------------CC
T ss_pred -----------CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCCcC------------------Cc
Confidence 24689999999999976442 1268999999999987321 01
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|+|+.- + ..+++|+.|+|++|.|+.. +. ..++|+.|++++|.++. ++.
T Consensus 160 ~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l~~l-----~~---~~~~L~~L~L~~N~l~~-----l~~ 218 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQLASL-----PT---LPSELYKLWAYNNRLTS-----LPA 218 (622)
T ss_dssp CTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSS-----CCC
T ss_pred cCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCCCCC-----CC---ccchhhEEECcCCcccc-----cCC
Confidence 35699999999999852 2 3468999999999999852 22 23789999999999983 333
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
.+++|+.|+|++|.|+.. + ...++|+.|+|++|.|+.- +. .+++|+.|+|++|.|+.
T Consensus 219 ---~~~~L~~L~Ls~N~L~~l-----p---~~l~~L~~L~Ls~N~L~~l-----p~---~~~~L~~L~Ls~N~L~~---- 275 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTSL-----P---VLPSELKELMVSGNRLTSL-----PM---LPSGLLSLSVYRNQLTR---- 275 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCCS----
T ss_pred ---CCCCCCEEEccCCccCcC-----C---CCCCcCcEEECCCCCCCcC-----Cc---ccccCcEEeCCCCCCCc----
Confidence 247899999999999742 2 3458999999999999852 21 57899999999999984
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++..+..+++|+.|++++|.-.
T Consensus 276 -lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 276 -LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CCGGGGGSCTTCEEECCSCCCC
T ss_pred -CCHHHhhccccCEEEecCCCCC
Confidence 5667889999999999999764
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-13 Score=135.65 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=52.4
Q ss_pred hhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCC-CCccchHH
Q psy18075 560 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~-L~d~g~~~ 638 (999)
..+++|++|+|++|.|+..+. ..+..+++|++|+|++|.+++. .+..+..+++|++|++++|. +++.
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~---- 152 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDI---- 152 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCC----
T ss_pred hcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCcccc----
Confidence 334455555555555543322 2233345555555555555532 22333445555555555554 4422
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+++|+.|++++|.|++.. .+..+++|+.|++++|+|+.
T Consensus 153 --~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 --MPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --GGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC----
T ss_pred --HhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccCC
Confidence 13444556666666666655421 34455666666666666543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=139.25 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=141.3
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
...+++++++++++... .+-+..++.|+|++|++..... ..|..+++|++|+|++|.|+
T Consensus 14 ~~~~~l~~~~~~l~~~p-----------------~~~~~~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-----------------SGIPADTEKLDLQSTGLATLSD----ATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSCC-----------------SCCCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCccccC-----------------CCCCCCCCEEEccCCCcCccCH----hHhcCcccCCEEECCCCcCC
Confidence 46789999999886221 1123569999999999986433 34667899999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
.. .+..+..+++|+.|+|++|.++.. ....+..+++|+.|+|++|.|+... ...+..+++|+.|+|++
T Consensus 73 ~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 73 TL----SAGVFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLP----SGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred cc----CHhHhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcC----hhHhccCCcccEEECcC
Confidence 64 334567789999999999999842 2345677899999999999998433 23456789999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~e 718 (999)
|.|+... ...+..+++|++|+|++|.|+... ...+..+++|+.|++++|....+
T Consensus 141 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 141 NQLQSIP----AGAFDKLTNLQTLSLSTNQLQSVP----HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccC----HHHcCcCcCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCceeCC
Confidence 9998632 235678899999999999998632 24577889999999999987665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=156.86 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=133.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|.... .+ ..|++|+.|+|++|.|+.... +.. +++|+.|+|++|
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l------~~l~~L~~L~Ls~N~l~~~~~------l~~----------l~~L~~L~Ls~N 97 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP------LTN----------LKNLGWLFLDEN 97 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TG------GGCTTCCEEECTTSCCCCCGG------GGG----------CTTCCEEECCSS
T ss_pred CCCCCEEECcCCCCCCCh--HH------ccCCCCCEEEeeCCCCCCChh------hcc----------CCCCCEEECcCC
Confidence 358899999999987653 22 235789999999998874332 222 356999999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
+|... ..+..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+. + ..+..+++|+.|+
T Consensus 98 ~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 98 KIKDL------SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLS 159 (605)
T ss_dssp CCCCC------TTSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCC-----C-GGGGSCTTCSEEE
T ss_pred CCCCC------hhhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCC-----c-hhhcccCCCCEEE
Confidence 98852 2467788999999999998863 346778999999999999884 2 4567889999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|++|.|++.. . +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++...
T Consensus 160 Ls~N~l~~~~-----~-l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIV-----P-LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCch-----h-hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCC
Confidence 9999987432 1 67789999999999999863 3577889999999999988764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=140.41 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=123.0
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
.++.+++++|.+++.. .+..+ ++|++|++++|+|+... .+.. .++|+.|+|++|+|
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l------~~L~~L~l~~n~i~~l~------~l~~----------l~~L~~L~L~~N~i 75 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKEL------SGVQNFNGDNSNIQSLA------GMQF----------FTNLKELHLSHNQI 75 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHH------TTCSEEECTTSCCCCCT------TGGG----------CTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCccccc--chhhc------CcCcEEECcCCCcccch------HHhh----------CCCCCEEECCCCcc
Confidence 5666778888887655 33332 58899999998886432 1222 25688999999888
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
++... +..+++|+.|+|++|+|+... . +.. ++|+.|+|++|.++. + ..+..+++|+.|+++
T Consensus 76 ~~~~~------l~~l~~L~~L~L~~N~l~~l~--~----~~~-~~L~~L~L~~N~l~~-----~-~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 76 SDLSP------LKDLTKLEELSVNRNRLKNLN--G----IPS-ACLSRLFLDNNELRD-----T-DSLIHLKNLEILSIR 136 (263)
T ss_dssp CCCGG------GTTCSSCCEEECCSSCCSCCT--T----CCC-SSCCEEECCSSCCSB-----S-GGGTTCTTCCEEECT
T ss_pred CCChh------hccCCCCCEEECCCCccCCcC--c----ccc-CcccEEEccCCccCC-----C-hhhcCcccccEEECC
Confidence 86432 667888999999999887631 1 222 789999999998874 2 246778899999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
+|.+++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|++++|.++..
T Consensus 137 ~N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 9988753 2466778899999999988863 4567788999999999887664
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-13 Score=142.75 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=145.1
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCc-cCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC-
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR- 544 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~-Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~- 544 (999)
++|+.|+|++|.|+......+ ..+++|++|+|++|. ++......+ +..++|++|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~------~~l~~L~~L~l~~n~~l~~i~~~~f--------------~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF------SNLPNISRIYVSIDVTLQQLESHSF--------------YNLSKVTHIEIRNT 90 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT------TTCTTCCEEEEECCSSCCEECTTTE--------------ESCTTCCEEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHc------cCCCCCcEEeCCCCCCcceeCHhHc--------------CCCcCCcEEECCCC
Confidence 489999999999987665444 235799999999997 763332111 2346799999998
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCc---eeeccCC-CCCcCCccccc-ccccCCC
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR---HLNLNDN-TITYKGAIPLG-QALSKLP 619 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr---~LdLS~N-~Lsd~G~~~L~-~aL~~l~ 619 (999)
|+++.... ..|..+++|++|+|++|.|+. ++. +..+++|+ .|++++| .++. +. ..+..++
T Consensus 91 n~l~~i~~----~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~-----i~~~~~~~l~ 155 (239)
T 2xwt_C 91 RNLTYIDP----DALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTS-----IPVNAFQGLC 155 (239)
T ss_dssp TTCCEECT----TSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCE-----ECTTTTTTTB
T ss_pred CCeeEcCH----HHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhh-----cCcccccchh
Confidence 99885332 346678899999999999985 233 66677887 9999999 8874 33 3467788
Q ss_pred CCc-EEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC-CCCcchhhHHHhhccC-CCcCEEEccCCCCChhcHHHHH
Q psy18075 620 SLA-ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 620 sL~-~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~-I~~~g~~~L~~~L~~~-~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
+|+ .|++++|.++.... .++.. ++|+.|+|++|+ ++.-. ...+..+ ++|+.|++++|.|+.-.
T Consensus 156 ~L~~~L~l~~n~l~~i~~----~~~~~-~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~----- 221 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQG----YAFNG-TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALP----- 221 (239)
T ss_dssp SSEEEEECCSCCCCEECT----TTTTT-CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCC-----
T ss_pred cceeEEEcCCCCCcccCH----hhcCC-CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCC-----
Confidence 999 99999999874332 22333 789999999995 87532 2345677 89999999999997622
Q ss_pred HHHhcCCCCCEEeCCCC
Q psy18075 697 KLMKSFGMAAALVLEDD 713 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls~N 713 (999)
. ..+++|+.|++.++
T Consensus 222 ~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 S--KGLEHLKELIARNT 236 (239)
T ss_dssp C--TTCTTCSEEECTTC
T ss_pred h--hHhccCceeeccCc
Confidence 1 15778889888765
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-13 Score=155.86 Aligned_cols=249 Identities=18% Similarity=0.137 Sum_probs=128.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHh----------hhhcc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRAL----------WKDMF 443 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll----------~~nl~ 443 (999)
.++.+.++++.+ ..++..++++++|++|++++|.+.......++ .+.+++... ..++.
T Consensus 12 ~L~~L~l~~n~l--------~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~----~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL--------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG----EQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSC----CCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cchhhhcccCch--------hhCChhHhcccchhhhhccCCcccccCCcccc----cchhcchhhhhhhhccCCCEEEec
Confidence 556677777666 25677777778888888877655432221111 122221110 00111
Q ss_pred cCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhh
Q psy18075 444 TGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 523 (999)
Q Consensus 444 t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~ 523 (999)
.+++ ..+|. ..++|+.|+|++|.++.... ..++|++|++++|.++....
T Consensus 80 ~~~l-~~lp~-----------~~~~L~~L~l~~n~l~~lp~----------~~~~L~~L~l~~n~l~~l~~--------- 128 (454)
T 1jl5_A 80 NLGL-SSLPE-----------LPPHLESLVASCNSLTELPE----------LPQSLKSLLVDNNNLKALSD--------- 128 (454)
T ss_dssp TSCC-SCCCS-----------CCTTCSEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSCCCS---------
T ss_pred CCcc-ccCCC-----------CcCCCCEEEccCCcCCcccc----------ccCCCcEEECCCCccCcccC---------
Confidence 1111 11111 12466777777776654321 01367777777776652110
Q ss_pred hccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCC
Q psy18075 524 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 603 (999)
Q Consensus 524 ~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~L 603 (999)
.+.+|++|++++|+++. ++ .+..+++|++|++++|.|+.. +.. .++|++|++++|.+
T Consensus 129 ---------~~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~l-----p~~---~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 129 ---------LPPLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKL-----PDL---PPSLEFIAAGNNQL 185 (454)
T ss_dssp ---------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCC-----CCC---CTTCCEEECCSSCC
T ss_pred ---------CCCCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCccc-----CCC---cccccEEECcCCcC
Confidence 11357888888887763 22 366677788888888877642 211 23778888888877
Q ss_pred CcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEcc
Q psy18075 604 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683 (999)
Q Consensus 604 sd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs 683 (999)
.. ++ .+..+++|+.|++++|.++.. +. ..++|+.|++++|.++. +. .+..+++|++|+++
T Consensus 186 ~~-----l~-~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 186 EE-----LP-ELQNLPFLTAIYADNNSLKKL-----PD---LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp SS-----CC-CCTTCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECC
T ss_pred Cc-----Cc-cccCCCCCCEEECCCCcCCcC-----CC---CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECC
Confidence 63 33 466777888888888877631 11 11578888888887763 22 25677788888888
Q ss_pred CCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 684 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 684 ~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
+|.++.- . ...++|+.|++++|.-.
T Consensus 246 ~N~l~~l-----~---~~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 246 NNLLKTL-----P---DLPPSLEALNVRDNYLT 270 (454)
T ss_dssp SSCCSSC-----C---SCCTTCCEEECCSSCCS
T ss_pred CCcCCcc-----c---ccccccCEEECCCCccc
Confidence 8877641 1 12367778888776543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-13 Score=139.45 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=128.2
Q ss_pred CCcccEEEecCCC-CCCccHHHHHHHHhccCCCCccEEEccC-CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc
Q psy18075 466 GARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 543 (999)
Q Consensus 466 ~~sL~~LdLS~N~-L~~~gv~~L~~~L~s~~c~~L~~L~Ls~-n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls 543 (999)
+++|+.|+|++|. ++......+ ..+++|++|+|++ |.|+...... ++..++|++|+++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f------~~l~~L~~L~l~~~n~l~~i~~~~--------------f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSF------YNLSKVTHIEIRNTRNLTYIDPDA--------------LKELPLLKFLGIF 113 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTE------ESCTTCCEEEEEEETTCCEECTTS--------------EECCTTCCEEEEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHc------CCCcCCcEEECCCCCCeeEcCHHH--------------hCCCCCCCEEeCC
Confidence 5689999999997 876554333 3457999999998 8886332211 1234679999999
Q ss_pred CCCCCchhHHHHHHHHhhccccc---ccccCCC-ccCchhhhhhhHHhhhcccCc-eeeccCCCCCcCCcccccccccCC
Q psy18075 544 RNRLENEGAKMLAAVFKKLKTLE---RVEMPQN-GIYHVGITALSDAFEENKNLR-HLNLNDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 544 ~N~L~d~g~~~L~~~L~~~~sLe---~LdLs~N-~It~~g~~~La~aL~~~~~Lr-~LdLS~N~Lsd~G~~~L~~aL~~l 618 (999)
+|+++.- +. +..+++|+ +|++++| .|+... ...+..+++|+ .|+|++|.+.. ++......
T Consensus 114 ~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~n~l~~-----i~~~~~~~ 178 (239)
T 2xwt_C 114 NTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYNNGFTS-----VQGYAFNG 178 (239)
T ss_dssp EECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCSCCCCE-----ECTTTTTT
T ss_pred CCCCccc-----cc-cccccccccccEEECCCCcchhhcC----cccccchhcceeEEEcCCCCCcc-----cCHhhcCC
Confidence 9998852 22 66677887 9999999 887642 23466789999 99999999873 44333334
Q ss_pred CCCcEEEcCCCC-CCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 619 PSLAILNLGDCL-LKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 619 ~sL~~LdLs~N~-L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
++|+.|++++|. ++... ..++..+ ++|+.|+|++|+|+.-.. ...++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALPS-------KGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCCC-------TTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCCh-------hHhccCceeeccCcc
Confidence 789999999995 87443 2456677 899999999999986322 157789999998764
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=152.05 Aligned_cols=189 Identities=21% Similarity=0.282 Sum_probs=148.9
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
.+..++|+.+.+.+... +..+ ++|+.|+|++|.|.... .+.. +++|+.|+|++|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L------~~L~~L~l~~n~i~~l~------~l~~----------l~~L~~L~Ls~N~l 77 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNEL------NSIDQIIANNSDIKSVQ------GIQY----------LPNVTKLFLNGNKL 77 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHH------TTCCCCBCTTCCCCCCT------TGGG----------CTTCCEEECTTSCC
T ss_pred HHHHHhccCCCcccccc--hhcC------CCCCEEECcCCCCCCCh------HHcc----------CCCCCEEEeeCCCC
Confidence 34455667777755432 2222 58999999999987432 1222 35699999999999
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
..... +..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|.. + ..+..+++|+.|+|+
T Consensus 78 ~~~~~------l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 78 TDIKP------LTNLKNLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLG 139 (605)
T ss_dssp CCCGG------GGGCTTCCEEECCSSCCCCC------TTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECC
T ss_pred CCChh------hccCCCCCEEECcCCCCCCC------hhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECC
Confidence 86432 77899999999999999863 257789999999999999985 2 346779999999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCE
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 707 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~ 707 (999)
+|.++.. ..+..+++|+.|+|++|.|..... +..+++|+.|+|++|.|+.. ..+..+++|+.
T Consensus 140 ~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~ 201 (605)
T 1m9s_A 140 NNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDV 201 (605)
T ss_dssp SSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSE
T ss_pred CCccCCc------hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hHHccCCCCCE
Confidence 9999853 467788999999999999987321 77899999999999999873 35888999999
Q ss_pred EeCCCCCCC
Q psy18075 708 LVLEDDEGE 716 (999)
Q Consensus 708 L~Ls~N~~e 716 (999)
|++++|...
T Consensus 202 L~L~~N~l~ 210 (605)
T 1m9s_A 202 LELFSQECL 210 (605)
T ss_dssp EECCSEEEE
T ss_pred EEccCCcCc
Confidence 999987543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=148.55 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=59.2
Q ss_pred cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 590 ~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
+|+|++|+|++|.+++.++..++++ ..+++|++|+|+.|.+++.|+..++.++..+++|+.|+|++|.|++.|+..|..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 5667777776666666555555443 345667777777777777676666666666677777777777777766666665
Q ss_pred hhccCCCcCEEEccCCC
Q psy18075 670 AMKNKTKLKQINVSENQ 686 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~ 686 (999)
++ ...+++++++
T Consensus 330 al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-----PMKIDVSDSQ 341 (362)
T ss_dssp HC-----CSEEECCSBC
T ss_pred Hc-----CCEEEecCCc
Confidence 54 3446776665
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-12 Score=131.58 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=120.0
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+|+.|++++|.+.+- + .+..+++|++|++++|.++.. ..+..+++|++|+|++|.+++.+ ...+
T Consensus 45 ~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~----~~~l 108 (197)
T 4ezg_A 45 SLTYITLANINVTDL-----T-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPNL 108 (197)
T ss_dssp TCCEEEEESSCCSCC-----T-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGG----SCCC
T ss_pred CccEEeccCCCccCh-----H-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCccc----Chhh
Confidence 488888888888742 2 366789999999999987753 35677899999999999998633 3456
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC-CCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHH
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 694 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~-I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~ 694 (999)
..+++|+.|++++|.+++.+ ...+..+++|++|+|++|. +++- . .+..+++|+.|++++|.|++-
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~~i~~~-----~-~l~~l~~L~~L~l~~n~i~~~---- 174 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDI-----M-PLKTLPELKSLNIQFDGVHDY---- 174 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGG----HHHHTTCSSCCEEECCSCTBCCCC-----G-GGGGCSSCCEEECTTBCCCCC----
T ss_pred cCCCCCCEEEecCCccCcHh----HHHHhhCCCCCEEEccCCCCcccc-----H-hhcCCCCCCEEECCCCCCcCh----
Confidence 67899999999999998654 4556678999999999998 8763 2 578899999999999999872
Q ss_pred HHHHHhcCCCCCEEeCCCCCC
Q psy18075 695 MEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 695 L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
. .+..+++|+.|++++|..
T Consensus 175 -~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 -R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -T-TGGGCSSCCEEEECBC--
T ss_pred -H-HhccCCCCCEEEeeCccc
Confidence 2 678899999999999864
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=150.01 Aligned_cols=172 Identities=21% Similarity=0.214 Sum_probs=126.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|+.|+|++|.|+... . .+++|++|+|++|+|+.... + . .+|+.|+|++|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~--------~l~~L~~L~Ls~N~l~~ip~--l----~------------~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--E--------LPASLEYLDACDNRLSTLPE--L----P------------ASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCC--C--------CCTTCCEEECCSSCCSCCCC--C----C------------TTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc--c--------ccCCCCEEEccCCCCCCcch--h----h------------cCCCEEECCCCc
Confidence 47999999999998544 1 24689999999999874211 1 1 159999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+. ++. .+++|+.|+|++|.|+.. +. .+++|+.|+|++|.|+. ++. +. ++|+.|+|
T Consensus 132 l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 132 LTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDV 187 (571)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEEC
T ss_pred CCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEEC
Confidence 985 222 478999999999999853 22 36799999999999984 444 43 89999999
Q ss_pred CCCCCCccchHHHHHhc-cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHH
Q psy18075 627 GDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 697 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL-~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~ 697 (999)
++|.|+.... +...+ ...+.|+.|+|++|.|+. ++..+..+++|+.|+|++|.++......+..
T Consensus 188 s~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 9999974322 22111 111334999999999985 5566677999999999999998864444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-12 Score=137.84 Aligned_cols=168 Identities=13% Similarity=0.162 Sum_probs=134.4
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
.++..+++++|.+++.. .+... .+|+.|++++|+++.-. .+..+++|++|+|++|.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l--------------~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~ 76 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKEL--------------SGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQIS 76 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHH--------------TTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCC
T ss_pred HHHHHHHhcCCCccccc--chhhc--------------CcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccC
Confidence 35777888888887433 23222 45999999999998532 4677899999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
+.. . +..+++|+.|+|++|.++. +.. +.. ++|+.|++++|.+++. ..+..+++|+.|+|++
T Consensus 77 ~~~-----~-l~~l~~L~~L~L~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 77 DLS-----P-LKDLTKLEELSVNRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRN 137 (263)
T ss_dssp CCG-----G-GTTCSSCCEEECCSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTT
T ss_pred CCh-----h-hccCCCCCEEECCCCccCC-----cCc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCC
Confidence 642 2 7789999999999999985 222 223 8999999999999853 3477889999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
|+|++. ..+..+++|+.|+|++|.|+.. ..+..+++|+.|++++|.-..
T Consensus 138 N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 138 NKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence 999873 2578899999999999999884 567889999999999986543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=147.34 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
++|++|++++|++..- +. ..++|+.|++++|.++.. +.. .++|+.|++++|.++. +..
T Consensus 237 ~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~N~l~~l-----~~~---~~~L~~L~ls~N~l~~-----l~~- 294 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL-----PD---LPPSLEALNVRDNYLTDL-----PEL---PQSLTFLDVSENIFSG-----LSE- 294 (454)
T ss_dssp TTCCEEECCSSCCSSC-----CS---CCTTCCEEECCSSCCSCC-----CCC---CTTCCEEECCSSCCSE-----ESC-
T ss_pred CCCCEEECCCCcCCcc-----cc---cccccCEEECCCCccccc-----Ccc---cCcCCEEECcCCccCc-----ccC-
Confidence 4566666666665531 11 134566666666666531 111 2456666776666653 111
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
-.++|+.|++++|.++. +... ++|+.|++++|+++.-. ..+++|+.|++++|.++.-
T Consensus 295 --~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~l~~lp--------~~~~~L~~L~L~~N~l~~l--- 352 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNKLIELP--------ALPPRLERLIASFNHLAEV--- 352 (454)
T ss_dssp --CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC---
T ss_pred --cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCcccccc--------ccCCcCCEEECCCCccccc---
Confidence 12467777777777653 1223 47888888888777421 1247788888888887742
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 694 EMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 694 ~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
+. .+++|+.|++++|.-.
T Consensus 353 --p~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 353 --PE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp --CC---CCTTCCEEECCSSCCS
T ss_pred --cc---hhhhccEEECCCCCCC
Confidence 22 3577888888877653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=146.56 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=147.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
+++++|||++|+|+......| ..+++|++|+|++|+|+..... .++..++|++|+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f------~~l~~L~~L~Ls~N~i~~i~~~--------------~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF------FSFPELQVLDLSRCEIQTIEDG--------------AYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT------TTCTTCCEEECTTCCCCEECTT--------------TTTTCTTCCEEECTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHHH------hCCCCCCEEECCCCcCCCcChh--------------HhcCCCCCCEEEccCCc
Confidence 589999999999987765555 3457999999999998732211 12334679999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+.-. ...|..+++|++|+|++|.|+... ...|..+++|++|+|++|.+... .++..+..+++|++|++
T Consensus 112 l~~l~----~~~f~~L~~L~~L~Ls~N~l~~l~----~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 112 IQSLA----LGAFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCEEC----GGGGTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEEC
T ss_pred CCCCC----HHHhcCCCCCCEEECCCCcCCCCC----hhhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcc
Confidence 98532 234677999999999999998632 23467789999999999998742 24556677899999999
Q ss_pred CCCCCCccchHHHHHhccCC-CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~-~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.++......+.. +... ..+..++++.|.++... ........+..+++.+|.... ......+..+..+
T Consensus 181 ~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~-----~~~~~~~~~~~l~l~~n~~~~---~~~~~~~~~l~~l 251 (635)
T 4g8a_A 181 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGL 251 (635)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEEC-----TTTTTTCEEEEEEEESCCSSH---HHHHHHHHTTTTC
T ss_pred cCccccccccccccc-hhhhhhhhhhhhcccCcccccC-----cccccchhhhhhhhhcccccc---cccchhhcCCccc
Confidence 999998654444433 3333 45568999999887522 222345567889999887654 3445566777777
Q ss_pred CEEeC
Q psy18075 706 AALVL 710 (999)
Q Consensus 706 ~~L~L 710 (999)
+...+
T Consensus 252 ~~~~l 256 (635)
T 4g8a_A 252 EVHRL 256 (635)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 66644
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=122.31 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=98.9
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
.++|++|+|++|.|++.. ++..+..+++|+.|+|++|.++. + ..+..+++|+.|++++|.++.. ++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchH----HHH
Confidence 467888888888877322 34445667888888888888874 2 5667788888888888888753 233
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
.+..+++|+.|+|++|.|+.... ...+..+++|++|++++|.++.... .....+..+++|+.|++++|...+
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChhh
Confidence 34456888899999998876321 1456778889999999998876321 122467788899999888876543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=149.14 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=137.4
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.+|+.|+|++|.|+..... + +++|++|+|++|+|+... +.+++|+.|+|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l--------~~~L~~L~Ls~N~l~~ip------------------~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-L--------PPQITVLEITQNALISLP------------------ELPASLEYLDACDNR 111 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-C--------CTTCSEEECCSSCCSCCC------------------CCCTTCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHh-H--------cCCCCEEECcCCCCcccc------------------cccCCCCEEEccCCC
Confidence 4899999999999764321 1 258999999999997321 123569999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+.- +. +.. +|++|+|++|.|+. ++. .+++|+.|+|++|.|+. ++. .+++|+.|+|
T Consensus 112 l~~i-----p~-l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 112 LSTL-----PE-LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSV 167 (571)
T ss_dssp CSCC-----CC-CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEEC
T ss_pred CCCc-----ch-hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEEC
Confidence 9852 22 322 89999999999986 333 47899999999999984 333 4679999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhh-ccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L-~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
++|.|+.. +. +. ++|+.|+|++|.|+.-.. +...+ ...+.|+.|+|++|.|+. ++..+..+++|
T Consensus 168 s~N~L~~l-----p~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L 232 (571)
T 3cvr_A 168 RNNQLTFL-----PE-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPT 232 (571)
T ss_dssp CSSCCSCC-----CC-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTT
T ss_pred CCCCCCCc-----ch-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCC
Confidence 99999752 22 33 899999999999985332 11111 122334999999999985 56667779999
Q ss_pred CEEeCCCCCCCC
Q psy18075 706 AALVLEDDEGEC 717 (999)
Q Consensus 706 ~~L~Ls~N~~e~ 717 (999)
+.|++++|.-..
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 999999997643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-11 Score=124.98 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred CCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCc
Q psy18075 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 574 (999)
Q Consensus 495 ~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~ 574 (999)
.| ..+.++.++++++..- .+-+.+|+.|+|++|+|.... +..|..+++|++|+|++|+
T Consensus 18 ~C-s~~~v~c~~~~l~~ip-----------------~~~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 18 SC-SGTTVDCRSKRHASVP-----------------AGIPTNAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp EE-ETTEEECTTSCCSSCC-----------------SCCCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC
T ss_pred EE-eCCEeEccCCCcCccC-----------------CCCCCCCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCC
Confidence 35 5677888887765221 122356999999999988532 3456678899999999999
Q ss_pred cCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEc
Q psy18075 575 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNL 654 (999)
Q Consensus 575 It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdL 654 (999)
|+... ...|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+. ++..+..+++|+.|+|
T Consensus 76 l~~i~----~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 76 LGALP----VGVFDSLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLAL 142 (229)
T ss_dssp CCCCC----TTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEEC
T ss_pred CCCcC----hhhcccCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEEC
Confidence 97532 2345678999999999999984 223345678899999999999973 4556677899999999
Q ss_pred cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHHHHHHHhcC
Q psy18075 655 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKLMKSF 702 (999)
Q Consensus 655 s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~L~~~L~~l 702 (999)
++|.|+.-. ...+..+++|+.|+|.+|++.... ...+...+...
T Consensus 143 ~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 143 DQNQLKSIP----HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp CSSCCCCCC----TTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred CCCcCCccC----HHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 999998632 245677899999999999987653 45555555443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-11 Score=126.29 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=66.7
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 614 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~a 614 (999)
.+|++|++++|+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.. ....
T Consensus 52 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~ 119 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQLQSL----PNGVFDKLTQLKELALNTNQLQSL----PDGV 119 (208)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTT
T ss_pred ccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCcCCcc----CHhHhcCccCCCEEEcCCCcCccc----CHhH
Confidence 44666666666655321 11234456666666666666532 112344556666666666666521 1223
Q ss_pred ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 615 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 615 L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+..+++|+.|++++|.++... ...+..+++|+.|+|++|.+.. .++.|+.|++..|.++.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCC-----------CTTTTHHHHHHHHHCTT
T ss_pred hccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCeec-----------CCCCHHHHHHHHHhCCc
Confidence 445566666666666655322 1234445666666666665542 34455555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-12 Score=157.63 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=49.4
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
|+.|+|++|+|+. ++. +..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.|+. ++ .+.
T Consensus 443 L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~ 505 (567)
T 1dce_A 443 VRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GVA 505 (567)
T ss_dssp CSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GGT
T ss_pred ceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-ccC
Confidence 5555555555543 122 4445555555555555541 33444455555555555555542 22 344
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
.+++|+.|+|++|.|+... .+..+..+++|+.|+|++|+|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCC
Confidence 4555555555555554221 0233444455555555555444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=136.80 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=130.3
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
-+.+++++|.++..... + .+.++.|+|++|+|+......+. +...+|+.|+|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~--------~~~l~~L~Ls~N~l~~l~~~~~~-------------~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-L--------PSYTALLDLSHNNLSRLRAEWTP-------------TRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTEEECCSSCCSSCCSS-C--------CTTCSEEECCSSCCCEECTTSSS-------------SCCTTCCEEECCSSCCC
T ss_pred CCEEEeCCCCcCccCcc-C--------CCCCCEEECCCCCCCccChhhhh-------------hcccccCEEECCCCcCC
Confidence 36899999998764421 1 14689999999998743322111 03467999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
.... ..|..+++|++|+|++|.|+.. ....|..+++|+.|+|++|.|.. ..+..+..+++|+.|+|++
T Consensus 78 ~i~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FISS----EAFVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVV----VDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EECT----TTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCS
T ss_pred ccCh----hhccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccE----ECHHHhCCcccCCEEECCC
Confidence 5432 3466789999999999999864 23356778999999999999984 2245677889999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCC--cCEEEccCCCCChh
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK--LKQINVSENQFGEE 690 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~s--L~~LdLs~N~Is~e 690 (999)
|.|+......+ ..+..+++|+.|+|++|.|+.-... .+..++. |+.|+|.+|++.-+
T Consensus 146 N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 146 NQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLT----DLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCSCCGGGT-C----CTTCCEEECCSSCCCCCCHH----HHHHSCHHHHTTEECCSSCEECC
T ss_pred CcCCeeCHHHh-cCcccCCcCCEEECCCCCCCccCHH----HhhhccHhhcceEEecCCCccCC
Confidence 99985432111 1114579999999999999875432 3445555 48899999998754
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.9e-11 Score=123.39 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=121.3
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
.-+.+++++|+++.. .. .-+..++.|+|++|+|+.... ...|..+++|++|+|++|.|+.
T Consensus 12 ~~~~l~~s~n~l~~i-----P~------------~~~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 12 EGTTVDCSNQKLNKI-----PE------------HIPQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp ETTEEECCSSCCSSC-----CS------------CCCTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCE
T ss_pred CCCEeEeCCCCcccC-----cc------------CCCCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCE
Confidence 346888888887631 11 112457899999999875321 1235678899999999999986
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
.. ...|..+++|++|+|++|.|+. .....+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|
T Consensus 72 i~----~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 72 IE----EGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVG----NDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp EC----TTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBC----TTSSTTCTTCSEEECTTS
T ss_pred EC----HHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeEC----HhHcCCCccCCEEECCCC
Confidence 42 3356778999999999999974 23445778899999999999987543 355677899999999999
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-HHHHHHHHh
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG-VEEMEKLMK 700 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg-~~~L~~~L~ 700 (999)
.|+.. ....+..+++|+.|+|++|++.... ...+...+.
T Consensus 140 ~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 140 QITTV----APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CCCCB----CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred cCCEE----CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 99863 2456678899999999999986532 234444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.2e-12 Score=150.38 Aligned_cols=208 Identities=19% Similarity=0.248 Sum_probs=140.8
Q ss_pred cCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCch---------hhhHHHHHHhhhccCCcCCCCCC
Q psy18075 465 AGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT---------GCKLLSKALHDCYESSKKEGSPL 535 (999)
Q Consensus 465 ~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~---------g~~~La~~L~~~~~~s~~~g~~~ 535 (999)
.+++|+.|+|++|.++.. ...+.. |++|+.|++++|..-.. ....+...+..+ .
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-p~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l----------~ 409 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-QSELES------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------S 409 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-HHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH----------H
T ss_pred cCccceeccCChhhHHhh-HHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH----------H
Confidence 467899999999987532 122322 35899999977641000 011222233332 3
Q ss_pred CccEEE-ccCCCCCchhHHHHH-HHHhh--cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 536 ALKVFI-AGRNRLENEGAKMLA-AVFKK--LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 536 sLk~L~-Ls~N~L~d~g~~~L~-~~L~~--~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
+|+.|+ ++.|.+.+-....+. ..+.. ...|+.|+|++|.|+. ++. +..+++|+.|+|++|.|+ .+
T Consensus 410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~-----~l 478 (567)
T 1dce_A 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLR-----AL 478 (567)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCC-----CC
T ss_pred hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCccccc-----cc
Confidence 477777 565554321111111 11222 2368999999999985 344 778899999999999998 46
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+... .+..+..+++|+.|+|++|+|+...
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred chhhhcCCCCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7788899999999999999973 33 6788899999999999998631 1566788999999999999987631
Q ss_pred HHHHHHHHhcCCCCCEEeC
Q psy18075 692 VEEMEKLMKSFGMAAALVL 710 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~L 710 (999)
..+...+..+++|+.|++
T Consensus 550 -~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 -GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -SCTTHHHHHCTTCSEEEC
T ss_pred -cHHHHHHHHCcccCccCC
Confidence 123344566788888864
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-11 Score=118.24 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+++|+.|++++|++.+.. ++..+..+++|+.|+|++|.|+.. ..+..+++|++|+|++|.+... ++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence 456777777777776322 223355677888888888887753 4556678888888888888742 444
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+..+++|+.|++++|.+++... ...+..+++|+.|+|++|.++.... .....+..+++|++|++++|.+..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChhh
Confidence 45557788888888888864321 1456677888888888888875432 112356778888888888887754
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=113.13 Aligned_cols=134 Identities=18% Similarity=0.165 Sum_probs=92.1
Q ss_pred cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 562 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 562 ~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
.++|++|++++|.|++.. ++..+..+++|+.|+|++|.+... ..+..+++|+.|++++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 356777777777776322 334456677888888888887742 5566778888888888888742 344
Q ss_pred hccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 642 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
.+..+++|++|++++|.|++.. ....+..+++|++|++++|.++.... .....+..+++|+.|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCCC
Confidence 4555688888888888887521 22567778888888888888866321 1224677788888887753
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=120.72 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=119.4
Q ss_pred ccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCch
Q psy18075 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 499 L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~ 578 (999)
-+.+++++++++..- . +-+.+|+.|+|++|+|+.... ..|..+++|+.|+|++|.|+..
T Consensus 13 ~~~v~c~~~~l~~iP-----~------------~l~~~l~~L~l~~n~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIP-----T------------NLPETITEIRLEQNTIKVIPP----GAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TTEEECTTSCCSSCC-----S------------SCCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECCSSCCCEE
T ss_pred CCEEEcCCCCcCcCC-----C------------ccCcCCCEEECCCCcCCCcCH----hHhhCCCCCCEEECCCCcCCCc
Confidence 456777777765211 1 112469999999999885332 2456688999999999999854
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
.+..|..+++|++|+|++|.|+. +.. .+..+++|+.|+|++|.|+... +..+..+++|+.|+|++|
T Consensus 72 ----~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 72 ----APDAFQGLRSLNSLVLYGNKITE-----LPKSLFEGLFSLQLLLLNANKINCLR----VDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ----CTTTTTTCSSCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS
T ss_pred ----CHHHhhCCcCCCEEECCCCcCCc-----cCHhHccCCCCCCEEECCCCCCCEeC----HHHcCCCCCCCEEECCCC
Confidence 34567778999999999999883 333 3567889999999999987543 356677899999999999
Q ss_pred CCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhc
Q psy18075 658 EISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKS 701 (999)
Q Consensus 658 ~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~ 701 (999)
.|+... ...+..+++|+.|+|++|++..+ ....+...+..
T Consensus 139 ~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 139 KLQTIA----KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp CCSCCC----TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred cCCEEC----HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 998643 23466788999999999998653 23344444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=122.39 Aligned_cols=179 Identities=19% Similarity=0.178 Sum_probs=127.3
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
+.+.++.+++.++..... + .++|++|+|++|.|+...... ++...+|++|+|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~-~--------~~~L~~L~Ls~n~i~~~~~~~--------------~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-I--------PTNAQILYLHDNQITKLEPGV--------------FDSLINLKELYLGSNQL 76 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-C--------CTTCSEEECCSSCCCCCCTTT--------------TTTCTTCCEEECCSSCC
T ss_pred eCCEeEccCCCcCccCCC-C--------CCCCCEEEcCCCccCccCHHH--------------hhCccCCcEEECCCCCC
Confidence 567899999988765521 1 258999999999987432221 22346799999999998
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
+... ...|..+++|+.|+|++|.|+.. ....+..+++|+.|+|++|.|. .++..+..+++|+.|+|+
T Consensus 77 ~~i~----~~~~~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 77 GALP----VGVFDSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLT-----ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp CCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC-----SCCTTGGGCTTCSEEECC
T ss_pred CCcC----hhhcccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCccc-----ccCcccccCCCCCEEECC
Confidence 7432 13456789999999999999854 2334667899999999999998 466777889999999999
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc--hhhHHHhhccCCCcCEEEccCCCC
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g--~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
+|.|+... ...+..+++|+.|+|++|++.... ...+...+.... -....++++.+
T Consensus 144 ~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~-~~~~~~~g~~v 200 (229)
T 3e6j_A 144 QNQLKSIP----HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT-SIAMRWDGKAV 200 (229)
T ss_dssp SSCCCCCC----TTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG-GGEEEESSSEE
T ss_pred CCcCCccC----HHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc-cccccccCccc
Confidence 99997433 245677899999999999988653 334444443322 22334445443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=130.82 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=133.9
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHh-hcccccccccCCCccC
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIY 576 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~-~~~sLe~LdLs~N~It 576 (999)
.-+.+++++++|+.. .. +-+..++.|+|++|+|+.... ..+. .+++|+.|+|++|.|+
T Consensus 19 ~~~~l~c~~~~l~~i-----P~------------~~~~~l~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 19 ASNILSCSKQQLPNV-----PQ------------SLPSYTALLDLSHNNLSRLRA----EWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp ETTEEECCSSCCSSC-----CS------------SCCTTCSEEECCSSCCCEECT----TSSSSCCTTCCEEECCSSCCC
T ss_pred CCCEEEeCCCCcCcc-----Cc------------cCCCCCCEEECCCCCCCccCh----hhhhhcccccCEEECCCCcCC
Confidence 356889999888631 11 123459999999999986432 2344 6889999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
... ..+|..+++|+.|+|++|.|.. .....+..+++|+.|+|++|.|+... +..+..+++|+.|+|++
T Consensus 78 ~i~----~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FIS----SEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EEC----TTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCS
T ss_pred ccC----hhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCC
Confidence 642 3457778999999999999984 22345678899999999999998543 35677789999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCC--CCEEeCCCCCCCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM--AAALVLEDDEGECS 718 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~--L~~L~Ls~N~~e~e 718 (999)
|.|+.-....+ ..+..+++|+.|+|++|.|+.-... .+..++. ++.|++++|....+
T Consensus 146 N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 146 NQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLT----DLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCSCCGGGT-C----CTTCCEEECCSSCCCCCCHH----HHHHSCHHHHTTEECCSSCEECC
T ss_pred CcCCeeCHHHh-cCcccCCcCCEEECCCCCCCccCHH----HhhhccHhhcceEEecCCCccCC
Confidence 99987433221 1125689999999999999874433 3445555 47899999876654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=122.06 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=119.0
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
-+.+++++|.++..... + .+.+++|+|++|.|+...... .+ +..++|+.|+|++|+|+
T Consensus 13 ~~~l~~s~n~l~~iP~~-~--------~~~~~~L~L~~N~l~~~~~~~---~~----------~~l~~L~~L~L~~N~i~ 70 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-I--------PQYTAELRLNNNEFTVLEATG---IF----------KKLPQLRKINFSNNKIT 70 (220)
T ss_dssp TTEEECCSSCCSSCCSC-C--------CTTCSEEECCSSCCCEECCCC---CG----------GGCTTCCEEECCSSCCC
T ss_pred CCEeEeCCCCcccCccC-C--------CCCCCEEEcCCCcCCccCchh---hh----------ccCCCCCEEECCCCcCC
Confidence 46899999999764421 1 246899999999987432111 11 22356999999999998
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 628 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~ 628 (999)
... ...|..+++|++|+|++|.|+.. ....|..+++|++|+|++|.|.. ..+..+..+++|+.|+|++
T Consensus 71 ~i~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 71 DIE----EGAFEGASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp EEC----TTTTTTCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEEECTT
T ss_pred EEC----HHHhCCCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCe----ECHhHcCCCccCCEEECCC
Confidence 542 23567789999999999999864 23457779999999999999985 2345677889999999999
Q ss_pred CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc
Q psy18075 629 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 663 (999)
Q Consensus 629 N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g 663 (999)
|.|+... +..+..+++|+.|+|++|++....
T Consensus 139 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 139 NQITTVA----PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCBC----TTTTTTCTTCCEEECCSCCEECSG
T ss_pred CcCCEEC----HHHhcCCCCCCEEEecCcCCcCCC
Confidence 9998543 456777899999999999987543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-10 Score=122.95 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=121.0
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
-+.++++++.++. ++..+ .++|++|+|++|.|+... ...|..+++|+.|+|++|.|+. ..+.++.
T Consensus 13 ~~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~ 77 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISE----LAPDAFQ 77 (220)
T ss_dssp TTEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCE----ECTTTTT
T ss_pred CCEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCC----cCHHHhh
Confidence 4678898888774 22222 368999999999998642 2356778999999999999984 2356778
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 696 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~ 696 (999)
.+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.|+... .
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----~ 145 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELP----KSLFEGLFSLQLLLLNANKINCLR----VDAFQDLHNLNLLSLYDNKLQTIA----K 145 (220)
T ss_dssp TCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----T
T ss_pred CCcCCCEEECCCCcCCccC----HhHccCCCCCCEEECCCCCCCEeC----HHHcCCCCCCCEEECCCCcCCEEC----H
Confidence 8999999999999998432 234567799999999999998742 346778999999999999998742 2
Q ss_pred HHHhcCCCCCEEeCCCCCCCC
Q psy18075 697 KLMKSFGMAAALVLEDDEGEC 717 (999)
Q Consensus 697 ~~L~~l~~L~~L~Ls~N~~e~ 717 (999)
..+..+++|+.|++++|....
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 356788999999999997655
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=113.96 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=91.0
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|+.|++++|.+.+.. ++..+..+++|+.|+|++|.|+.. ..+..+++|++|+|++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 355777777777776322 223345577888888888887753 4556678888888888888742 445
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEcc
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs 683 (999)
.+..+++|+.|++++|.+++.. ....+..+++|++|++++|.++.... .....+..+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 5556778888888888886421 23566777888888888888876432 112456678888888875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=115.13 Aligned_cols=136 Identities=22% Similarity=0.249 Sum_probs=105.1
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.+|++|++++|+++... ...+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.++.- ...
T Consensus 27 ~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP----NGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp CTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCCcEEEcCCCccCcCC----hhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 356999999999988532 22456789999999999999853 233456789999999999998842 233
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+..+++|+.|++++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|++|+|++|.+..
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLP----DGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBCC
T ss_pred HhcCccCCCEEEcCCCcCcccC----HhHhccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCeec
Confidence 4677899999999999997433 234667799999999999998632 2346778999999999998764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-10 Score=138.77 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchh-----hhHHHHHHhhhccCCcCCCCCCCccEEE
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALKVFI 541 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g-----~~~La~~L~~~~~~s~~~g~~~sLk~L~ 541 (999)
+.++.|+|++|.+...... .|+.++|+.|.|.... ...... .+.....|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~------------~l~~l~Ls~~~i~~~~~~~n~~~~~~~----------~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA------------LLQHKKLSQYSIDEDDDIENRMVMPKD----------SKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcchhh------------HhhcCccCcccccCccccccceecChh----------hhccCCCCcEEE
Confidence 4677888888877553211 2444455555443221 111111 223346688889
Q ss_pred ccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCC
Q psy18075 542 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 621 (999)
Q Consensus 542 Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL 621 (999)
|++|++.. ++..+..+++|++|+|++|.|+. ++..|..+++|+.|+|++|.|+ .++..+..+++|
T Consensus 231 Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L 295 (727)
T 4b8c_D 231 LSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQL 295 (727)
T ss_dssp CTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTC
T ss_pred CCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCC
Confidence 98888873 33344567888889999888872 5666778888999999988887 366777788888
Q ss_pred cEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc
Q psy18075 622 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 662 (999)
Q Consensus 622 ~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~ 662 (999)
+.|+|++|.|+. |+..+..+++|+.|+|++|.|+..
T Consensus 296 ~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCC
Confidence 999998888862 455577788888999999988763
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-11 Score=123.23 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=84.6
Q ss_pred HHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCcc
Q psy18075 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 634 (999)
Q Consensus 555 L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~ 634 (999)
++..+..+++|++|+|++|.|+. ++ .+..+++|+.|+|++|.++. ++..+..+++|+.|++++|.++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-
Confidence 34456667777777777777765 22 55566777777777777662 34444445677777777777763
Q ss_pred chHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc------HHHHHHHHhcCCCCCEE
Q psy18075 635 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG------VEEMEKLMKSFGMAAAL 708 (999)
Q Consensus 635 g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg------~~~L~~~L~~l~~L~~L 708 (999)
. + .+..+++|+.|+|++|.|+..+. ...+..+++|++|++++|++.... .......+..+++|+.|
T Consensus 108 -l---~-~~~~l~~L~~L~l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 108 -L---S-GIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -H---H-HHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -C---C-ccccCCCCCEEECCCCcCCchhH---HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 2 2 34445777777777777775221 135667777777777777765431 22334556777778877
Q ss_pred e
Q psy18075 709 V 709 (999)
Q Consensus 709 ~ 709 (999)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-10 Score=112.97 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhc-ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~-~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
+.+|+.|++++|+++.- . .+..+ ++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+. ++
T Consensus 18 ~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~-----~~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-----IG 80 (176)
T ss_dssp TTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-----EC
T ss_pred cCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccc-----cC
Confidence 34566666666665531 1 12222 2666666666666542 334455666666666666652 22
Q ss_pred cc-ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 613 QA-LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 613 ~a-L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
.. +..+++|+.|++++|.+++... ...+..+++|+.|++++|+++.... .....+..+++|+.||+++|.+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhcCCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCHH
Confidence 22 2445566666666666643211 1134455666666666666653221 11123445666666666666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=108.02 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=104.2
Q ss_pred hhcccccccccCCCccCchhhhhhhHHhhhc-ccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHH
Q psy18075 560 KKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 638 (999)
Q Consensus 560 ~~~~sLe~LdLs~N~It~~g~~~La~aL~~~-~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~ 638 (999)
..+.+|++|+|++|.|+.. . .+..+ ++|+.|+|++|.|+. + ..+..+++|+.|++++|.|+....
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~-- 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGE-- 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECS--
T ss_pred CCcCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCc--
Confidence 3467899999999999852 2 23334 499999999999984 3 567789999999999999985431
Q ss_pred HHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCC
Q psy18075 639 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 639 La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~ 715 (999)
..+..+++|+.|+|++|.|+.-.. ...+..+++|+.|++++|+++.... .....+..+++|+.|++++|..
T Consensus 82 --~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 --GLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp --CHHHHCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCH
T ss_pred --chhhcCCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCH
Confidence 223557999999999999976321 1267789999999999999975322 2234578899999999988754
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-11 Score=123.14 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=55.0
Q ss_pred hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHH
Q psy18075 561 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640 (999)
Q Consensus 561 ~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La 640 (999)
.+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.++. +. .+..+++|+.|++++|.+++.+. +
T Consensus 68 ~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~~~~--~- 133 (198)
T 1ds9_A 68 GMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS-----LS-GIEKLVNLRVLYMSNNKITNWGE--I- 133 (198)
T ss_dssp HHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-----HH-HHHHHHHSSEEEESEEECCCHHH--H-
T ss_pred cCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-----CC-ccccCCCCCEEECCCCcCCchhH--H-
Confidence 34455555555554442 22333334555555555555542 11 23344455555555555542211 1
Q ss_pred HhccCCCCCCEEEccCCCCCCcc------hhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 641 KYLTDNTTLEDVNLTCNEISVQG------GLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 641 ~aL~~~~~L~~LdLs~N~I~~~g------~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+..+++|+.|++++|++.... .......+..+++|+.|| +|.++.
T Consensus 134 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 23445566666666666554320 112234466677777775 666654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-09 Score=111.05 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
+|++|+|++|.|+..... ..+..+++|++|+|++|.|+. ..+.++..+++|+.|+|++|.|+... +..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEIS----NKMF 98 (192)
T ss_dssp TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEEC----SSSS
T ss_pred CCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccC----HHHh
Confidence 445555555554432100 013344555555555555542 12334444555555555555554221 1233
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
..+++|++|+|++|+|+.. .+..+..+++|++|+|++|++.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCcc
Confidence 4445555555555555531 1223444555555555555554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=133.13 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=95.3
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchh-----HHHHHHHHhhcccccccccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG-----AKMLAAVFKKLKTLERVEMP 571 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g-----~~~L~~~L~~~~sLe~LdLs 571 (999)
+.++.|.|.+|++..... ..|+.++|+.|.|.... .......+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~--------------------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ--------------------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcchh--------------------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECC
Confidence 368889998888764211 11344444444443221 22345667788999999999
Q ss_pred CCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCE
Q psy18075 572 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651 (999)
Q Consensus 572 ~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~ 651 (999)
+|.|.. ++..+..+++|++|+|++|.|+ .++..+..+++|+.|+|++|.|+. |+..+..+++|+.
T Consensus 233 ~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 233 NLQIFN-----ISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKY 297 (727)
T ss_dssp TSCCSC-----CCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSE
T ss_pred CCCCCC-----CChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCE
Confidence 999984 4555667899999999999998 467778889999999999999972 4666778899999
Q ss_pred EEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 652 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 652 LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
|+|++|.|+. ++..+..+++|+.|+|++|.|+..
T Consensus 298 L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCC
Confidence 9999999974 455688899999999999999864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-09 Score=108.27 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=92.9
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
-+.+++++|.|+. ++..+ .++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+. ....++.
T Consensus 12 ~~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRIST----LSNQSFS 75 (193)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCC----CCTTTTT
T ss_pred CCEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCE----eCHhHcc
Confidence 3566777776653 12111 3477888888888773 44567777888888888888874 2234566
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEM 695 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L 695 (999)
.+++|+.|+|++|.|+... +.++..+++|+.|+|++|.|+.-. ...+..+++|+.|+|++|++.-+ ....+
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGNDISVVP----EGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp TCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCCCCCeeC----hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 7788888888888887433 345666788888888888887522 23456778888888888887542 23344
Q ss_pred HHHHh
Q psy18075 696 EKLMK 700 (999)
Q Consensus 696 ~~~L~ 700 (999)
...+.
T Consensus 148 ~~~~~ 152 (193)
T 2wfh_A 148 SDWVK 152 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-09 Score=106.07 Aligned_cols=134 Identities=21% Similarity=0.307 Sum_probs=102.1
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
.-+.|++++|+|+..- . .-+.+|+.|++++|+|+..... ..+..+++|++|+|++|.|+.
T Consensus 9 ~~~~l~~s~~~l~~ip-----~------------~~~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIP-----R------------DIPLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp ETTEEECTTSCCSSCC-----S------------CCCTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCC
T ss_pred CCCEEEcCCCCcCcCc-----c------------CCCCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCC
Confidence 3478899998885221 1 1123699999999998753221 136678999999999999986
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
. .+.+|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+.. .+..+...++|++|+|++|
T Consensus 69 ~----~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 69 I----EPNAFEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp B----CTTTTTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTC
T ss_pred c----CHhHcCCcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCC
Confidence 4 35567788999999999999984 2334577889999999999999843 2456777899999999999
Q ss_pred CCCCcc
Q psy18075 658 EISVQG 663 (999)
Q Consensus 658 ~I~~~g 663 (999)
++....
T Consensus 137 ~l~c~c 142 (192)
T 1w8a_A 137 PFNCNC 142 (192)
T ss_dssp CBCCSG
T ss_pred CccCcC
Confidence 998653
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=100.65 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=86.6
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
.+.+++++|++.... .. ..++|++|+|++|+|+.. ....+..+++|++|+|++|.++. .....+.
T Consensus 9 ~~~l~~~~~~l~~~p-----~~--~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-----TG--IPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQS----LPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCC-----TT--CCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCC----CCTTTTT
T ss_pred CCEEEecCCCCccCC-----CC--CCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceE----eChhHcc
Confidence 456666666655321 11 135677777777776642 12334556778888888777763 1223345
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc--HHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEE 694 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg--~~~ 694 (999)
.+++|+.|++++|.++... ...+..+++|+.|+|++|.|+... ...+..+++|++|+|++|++.... ...
T Consensus 74 ~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCCccCEEECCCCCccccC----HHHhhCCcccCEEECcCCcceEeC----HHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 6777888888888776332 234556678888888888777422 223456778888888888876532 344
Q ss_pred HHHHHhcC
Q psy18075 695 MEKLMKSF 702 (999)
Q Consensus 695 L~~~L~~l 702 (999)
+...+...
T Consensus 146 l~~~~~~~ 153 (177)
T 2o6r_A 146 LSRWLNKN 153 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 44455443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-10 Score=126.29 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=130.3
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|+|++|.++.... .+|..+++|++|+|++|.+... +|.
T Consensus 31 ~l~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~Ls~N~i~~~-------------------------------i~~ 72 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQK-------GAFSGFGDLEKIEISQNDVLEV-------------------------------IEA 72 (350)
T ss_dssp TCSEEEEESCCCSEECT-------TSSTTCTTCCEEEEECCTTCCE-------------------------------ECT
T ss_pred CCCEEEccCCcCCCcCH-------HHHcCCCCCCEEECcCCCCCCc-------------------------------cCh
Confidence 57788888887742211 2466778888888888876321 000
Q ss_pred HHHHhhhhhhccCCccc-EEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 454 ALRYLGNGLQQAGARLV-ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~-~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+..+++|. .+.+++|+|.......+ ..+++|++|++++|+|+...... ..
T Consensus 73 -------~~f~~L~~l~~~l~~~~N~l~~l~~~~f------~~l~~L~~L~l~~n~l~~~~~~~--------------~~ 125 (350)
T 4ay9_X 73 -------DVFSNLPKLHEIRIEKANNLLYINPEAF------QNLPNLQYLLISNTGIKHLPDVH--------------KI 125 (350)
T ss_dssp -------TSBCSCTTCCEEEEEEETTCCEECTTSB------CCCTTCCEEEEEEECCSSCCCCT--------------TC
T ss_pred -------hHhhcchhhhhhhcccCCcccccCchhh------hhccccccccccccccccCCchh--------------hc
Confidence 0111233444 46677788865543333 23468899999988876322111 11
Q ss_pred CCCCccEEEccC-CCCCchhHHHHHHHHhhc-ccccccccCCCccCchhhhhhhHHhhhcccCceeeccC-CCCCcCCcc
Q psy18075 533 SPLALKVFIAGR-NRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND-NTITYKGAI 609 (999)
Q Consensus 533 ~~~sLk~L~Ls~-N~L~d~g~~~L~~~L~~~-~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~-N~Lsd~G~~ 609 (999)
....+..|++.. +++...... .+..+ ..++.|+|++|+|+.. ...+....+|+.|++++ |.++
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~----~f~~~~~~l~~L~L~~N~i~~i-----~~~~f~~~~L~~l~l~~~n~l~----- 191 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNKNGIQEI-----HNSAFNGTQLDELNLSDNNNLE----- 191 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCSSCCCEE-----CTTSSTTEEEEEEECTTCTTCC-----
T ss_pred ccchhhhhhhcccccccccccc----chhhcchhhhhhccccccccCC-----ChhhccccchhHHhhccCCccc-----
Confidence 224577787754 456532211 22233 4678888999988753 33333456788888875 5666
Q ss_pred ccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC-CCCCcchhhHHHhhccCCCcCEEEccCC
Q psy18075 610 PLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSEN 685 (999)
Q Consensus 610 ~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~~L~~~L~~~~sL~~LdLs~N 685 (999)
.++ .++..+++|+.|+|++|.|+.- +. ....+|++|.+.++ .++. ++ .+..+++|+.+++.++
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~l-----p~--~~~~~L~~L~~l~~~~l~~-----lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSL-----PS--YGLENLKKLRARSTYNLKK-----LP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCC-----CS--SSCTTCCEEECTTCTTCCC-----CC-CTTTCCSCCEEECSCH
T ss_pred CCCHHHhccCcccchhhcCCCCcCcc-----Ch--hhhccchHhhhccCCCcCc-----CC-CchhCcChhhCcCCCC
Confidence 344 3456778899999999988642 21 12366777776655 3332 22 3567788888888654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=103.04 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=99.9
Q ss_pred ccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCch
Q psy18075 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 578 (999)
Q Consensus 499 L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~ 578 (999)
-+.+++++|+|+... . +-+.+|+.|+|++|+|+. ++..|..+++|+.|+|++|.|+..
T Consensus 12 ~~~l~~~~~~l~~ip-----~------------~~~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLP-----K------------GIPRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TTEEECTTSCCSSCC-----S------------CCCTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCEEEcCCCCCCcCC-----C------------CCCCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe
Confidence 467888888876321 1 123469999999999984 335678889999999999999864
Q ss_pred hhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCC
Q psy18075 579 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 658 (999)
Q Consensus 579 g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~ 658 (999)
....|..+++|+.|+|++|.|+.- .+.++..+++|+.|+|++|.|+... ...+..+++|+.|+|++|+
T Consensus 70 ----~~~~f~~l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 70 ----SNQSFSNMTQLLTLILSYNRLRCI----PPRTFDGLKSLRLLSLHGNDISVVP----EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSC
T ss_pred ----CHhHccCCCCCCEEECCCCccCEe----CHHHhCCCCCCCEEECCCCCCCeeC----hhhhhcCccccEEEeCCCC
Confidence 234577789999999999999852 2346778899999999999997432 2356677999999999998
Q ss_pred CCCc
Q psy18075 659 ISVQ 662 (999)
Q Consensus 659 I~~~ 662 (999)
+..+
T Consensus 138 ~~C~ 141 (193)
T 2wfh_A 138 LYCD 141 (193)
T ss_dssp EECS
T ss_pred eecC
Confidence 8654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-08 Score=108.99 Aligned_cols=264 Identities=14% Similarity=0.150 Sum_probs=142.1
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhc-CCCcCEEEccCCCCC--hhHHHHHHHHHhhChhhHHHhhhhcccCCCccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINE-VKVLVSLNLEGNTLG--VNAAKAIADALSKHEHFKRALWKDMFTGRMKTE 450 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~-~~~L~~LdLs~N~L~--~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ 450 (999)
.++.|.+.|+ + ...+... +.. +++|+.|||++|.|. ...... .+.++ ...... ..
T Consensus 26 ~l~~L~l~g~-i---~~~~~~~----l~~~l~~L~~LdLs~n~i~~~~~~~~~-------~~~~~---~~~~~~----~~ 83 (329)
T 3sb4_A 26 SITHLTLTGK-L---NAEDFRH----LRDEFPSLKVLDISNAEIKMYSGKAGT-------YPNGK---FYIYMA----NF 83 (329)
T ss_dssp HCSEEEEEEE-E---CHHHHHH----HHHSCTTCCEEEEEEEEECCEEESSSS-------SGGGC---CEEECT----TE
T ss_pred ceeEEEEecc-c---cHHHHHH----HHHhhccCeEEecCcceeEEecCcccc-------ccccc---cccccc----cc
Confidence 5677888875 3 3333333 333 789999999999987 111000 11100 000000 01
Q ss_pred cchHHHHhhhhhhcc--------CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHh
Q psy18075 451 IPDALRYLGNGLQQA--------GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 522 (999)
Q Consensus 451 ip~~l~~L~~~L~~~--------~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~ 522 (999)
+....+.. +++|+.|+|.+ .+...+-..| ..|++|+.|+|.+|.+...+...+..
T Consensus 84 -------I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF------~~~~~L~~l~l~~n~i~~i~~~aF~~--- 146 (329)
T 3sb4_A 84 -------VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF------KGCDNLKICQIRKKTAPNLLPEALAD--- 146 (329)
T ss_dssp -------ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT------TTCTTCCEEEBCCSSCCEECTTSSCT---
T ss_pred -------cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh------hcCcccceEEcCCCCccccchhhhcC---
Confidence 22223334 78888888888 7776665555 45678888888888765433322221
Q ss_pred hhccCCcCCCCCCCccEEEccCCC-------CCch---------------hHHHHHHHHh----hcccccccccCCCccC
Q psy18075 523 DCYESSKKEGSPLALKVFIAGRNR-------LENE---------------GAKMLAAVFK----KLKTLERVEMPQNGIY 576 (999)
Q Consensus 523 ~~~~~s~~~g~~~sLk~L~Ls~N~-------L~d~---------------g~~~L~~~L~----~~~sLe~LdLs~N~It 576 (999)
| .++..+.++.+. +.+. ....+...+. ...++..+.+.++ +.
T Consensus 147 -~----------~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~ 214 (329)
T 3sb4_A 147 -S----------VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LD 214 (329)
T ss_dssp -T----------TCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CC
T ss_pred -C----------CceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ec
Confidence 1 223333332210 0000 0000111111 1234444545443 33
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCC-EEEc
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE-DVNL 654 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~-~LdL 654 (999)
..+...+ ...+++|+.|+|++|.+.. ++ .++..|.+|+.|+|.+| ++..+ ..++..|.+|+ .|+|
T Consensus 215 ~~~~~~l---~~~~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 215 NADFKLI---RDYMPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLEL 281 (329)
T ss_dssp HHHHHHH---HHHCTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEE
T ss_pred HHHHHHH---HHhcCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEE
Confidence 2222222 2236788888888877763 33 35566778888888876 55444 24566778888 8888
Q ss_pred cCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeC
Q psy18075 655 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 710 (999)
Q Consensus 655 s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~L 710 (999)
.. .++.-+ ..++..|++|+.|++.+|.+..-+ ..++..+++|+.+..
T Consensus 282 ~~-~l~~I~----~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIE----FGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEEC----TTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEEC
T ss_pred cc-cceEEc----hhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhcc
Confidence 77 444322 235667888888888888776633 235667777777653
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-08 Score=96.93 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=98.8
Q ss_pred CccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCc
Q psy18075 498 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 577 (999)
Q Consensus 498 ~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~ 577 (999)
..+.+++++++++.... +.+.+|+.|++++|+++... ...+..+++|++|+|++|.|+.
T Consensus 8 ~~~~l~~~~~~l~~~p~-----------------~~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-----------------GIPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp ETTEEECCSSCCSSCCT-----------------TCCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCEEEecCCCCccCCC-----------------CCCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCcceE
Confidence 56788888888763221 12346999999999987532 2245668899999999999985
Q ss_pred hhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCC
Q psy18075 578 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 657 (999)
Q Consensus 578 ~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N 657 (999)
. ....+..+++|+.|+|++|.|+. .....+..+++|+.|++++|.++... ...+..+++|++|+|++|
T Consensus 67 ~----~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 67 L----PDGVFDKLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp C----CTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSS
T ss_pred e----ChhHccCCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceEeC----HHHhcCCcccCEEEecCC
Confidence 3 22345678999999999999984 22334667899999999999997432 234566799999999999
Q ss_pred CCCCc
Q psy18075 658 EISVQ 662 (999)
Q Consensus 658 ~I~~~ 662 (999)
++...
T Consensus 135 ~~~~~ 139 (177)
T 2o6r_A 135 PWDCS 139 (177)
T ss_dssp CBCCC
T ss_pred Ceecc
Confidence 98864
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-09 Score=117.99 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=96.7
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCch-hh---hHHHHHHh----h-h--ccC-CcCCCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT-GC---KLLSKALH----D-C--YES-SKKEGSP 534 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~-g~---~~La~~L~----~-~--~~~-s~~~g~~ 534 (999)
+++++|+|++|+|+......|. .+++|++|+|++|.+... .. ..+..... . + ..+ +..++..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~------~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS------GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST------TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCCcCCCcCHHHHc------CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 4788888888888765544442 346888888888876321 11 11111000 0 0 000 1122334
Q ss_pred CCccEEEccCCCCCchhHHHHHHHHhhcccccccccCC-CccCchhhhhhhHHhhhc-ccCceeeccCCCCCcCCccccc
Q psy18075 535 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 535 ~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~-N~It~~g~~~La~aL~~~-~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
++|++|++++|+|..... ..+.....+..|++.+ +.|+.... ..+..+ ..++.|+|++|.|+ .+.
T Consensus 104 ~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i~~l~~----~~f~~~~~~l~~L~L~~N~i~-----~i~ 170 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIER----NSFVGLSFESVILWLNKNGIQ-----EIH 170 (350)
T ss_dssp TTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTCCEECT----TSSTTSBSSCEEEECCSSCCC-----EEC
T ss_pred cccccccccccccccCCc----hhhcccchhhhhhhccccccccccc----cchhhcchhhhhhcccccccc-----CCC
Confidence 445555555555442110 0111122333444432 23332211 112222 24566666666665 243
Q ss_pred ccccCCCCCcEEEcCC-CCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCC-CChh
Q psy18075 613 QALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEE 690 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~-N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~-Is~e 690 (999)
..+....+|+.|++.+ |.++... ..++..+++|+.|+|++|+|+.-. . ....+|+.|.+.++. +..
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~----~~~f~~l~~L~~LdLs~N~l~~lp-----~--~~~~~L~~L~~l~~~~l~~- 238 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHSLP-----S--YGLENLKKLRARSTYNLKK- 238 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCC----TTTTTTEECCSEEECTTSCCCCCC-----S--SSCTTCCEEECTTCTTCCC-
T ss_pred hhhccccchhHHhhccCCcccCCC----HHHhccCcccchhhcCCCCcCccC-----h--hhhccchHhhhccCCCcCc-
Confidence 3333445666666654 4444221 123445566777777777666421 1 123445555543332 221
Q ss_pred cHHHHHHHHhcCCCCCEEeCCC
Q psy18075 691 GVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 691 g~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
++ .+..+++|+.+++.+
T Consensus 239 ----lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 ----LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CC-CTTTCCSCCEEECSC
T ss_pred ----CC-CchhCcChhhCcCCC
Confidence 21 245566777777654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=95.97 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=80.5
Q ss_pred cccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhc
Q psy18075 564 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 643 (999)
Q Consensus 564 sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL 643 (999)
..+.|++++|+|+. ++..+ .++|+.|+|++|.|.. ..+..+..+++|+.|+|++|.|+... ...+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLP----AGVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCC----TTTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccC----hhhc
Confidence 34566666666654 22222 2567777777777763 12445666777888888888776322 2345
Q ss_pred cCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh--cHHHHHHHHhcCCCCC
Q psy18075 644 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFGMAA 706 (999)
Q Consensus 644 ~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l~~L~ 706 (999)
..+++|++|+|++|+|+... ...+..+++|++|+|++|++.-. ....+...+...+.+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 56688888888888887521 23466778888888888888765 3566777777766544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-08 Score=108.53 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcC-EEEccCCCCChhcHHHH
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK-QINVSENQFGEEGVEEM 695 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~-~LdLs~N~Is~eg~~~L 695 (999)
.+++|+.|+|++|.++..+. .++..|.+|+.|+|.+| +..-+ ..++..+++|+ .|++.+ .+..-+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l~~-~l~~I~---- 289 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLELPA-SVTAIE---- 289 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEECT-TCCEEC----
T ss_pred hcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEEcc-cceEEc----
Confidence 37899999999999886653 56788899999999998 65433 24577899999 999987 554422
Q ss_pred HHHHhcCCCCCEEeCCCCCC
Q psy18075 696 EKLMKSFGMAAALVLEDDEG 715 (999)
Q Consensus 696 ~~~L~~l~~L~~L~Ls~N~~ 715 (999)
..++..+++|+.+++++|.-
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCC
T ss_pred hhhhhCCccCCEEEeCCCcc
Confidence 25678999999999977643
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-08 Score=98.26 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=46.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCc-cCchhhhhhhHHhhhcccCceeeccCC-CCCcCCcccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQ 613 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g~~~La~aL~~~~~Lr~LdLS~N-~Lsd~G~~~L~~ 613 (999)
.|+.|+++++.|++.|+..+ ..+++|++|+|++|. |++.|+..|+..-..+++|++|+|++| .|++.|+..++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 35555555555555555433 335555555555553 555555555432111234555555554 355555544432
Q ss_pred cccCCCCCcEEEcCCCC-CCccc
Q psy18075 614 ALSKLPSLAILNLGDCL-LKSAG 635 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~-L~d~g 635 (999)
+++|+.|+|++|. +++.|
T Consensus 138 ----~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 ----FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----CTTCCEEEEESCTTCCCHH
T ss_pred ----CCCCCEEECCCCCCCCchH
Confidence 4555555555553 44443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.5e-08 Score=97.50 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=53.6
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.|++|||+++.|++.|+..+ ..|++|++|+|++| .|++.|...|+..-..+ ++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~----------~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ----------KSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHH----------HHCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHh------cCCCCCCEEEeCCCCccCHHHHHHHHhccccc----------CCCCEEEcCCCC
Confidence 56777777777777666655 23566777777776 46666666665421001 126666666653
Q ss_pred -CCchhHHHHHHHHhhcccccccccCCCc-cCchh
Q psy18075 547 -LENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVG 579 (999)
Q Consensus 547 -L~d~g~~~L~~~L~~~~sLe~LdLs~N~-It~~g 579 (999)
|++.|+..| ..+++|++|+|++|. |++.|
T Consensus 126 ~ITD~Gl~~L----~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 126 NVTDKGIIAL----HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TCCHHHHHHG----GGCTTCCEEEEESCTTCCCHH
T ss_pred cCCHHHHHHH----hcCCCCCEEECCCCCCCCchH
Confidence 666665543 235666666666664 56554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=93.56 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=84.3
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+.+.+++++|+|+.- +..+ .++|+.|+|++|.|+.. .+..|..+++|+.|+|++|.|+. .....+
T Consensus 10 ~~~~l~~s~n~l~~i-----p~~~--~~~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-----PTGI--PTTTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTV----LPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCC----CCTTTT
T ss_pred CCCEEEeCCCCcCcc-----CccC--CCCCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCc----cChhhc
Confidence 356777777777632 2211 36788888888888753 24456678888999999888873 122345
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc--chhhHHHhhccCCCcC
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKNKTKLK 678 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~--g~~~L~~~L~~~~sL~ 678 (999)
..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++... ....+...+...+.+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 67888999999999887432 23466778899999999988765 3555666666655444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-07 Score=92.05 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=60.6
Q ss_pred ccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHh
Q psy18075 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 670 (999)
Q Consensus 591 ~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~ 670 (999)
++|+.|+|++|.|.. ..+..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|+|+.-. ...
T Consensus 33 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~l~~L~~L~L~~N~l~~l~----~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIP----TGVFDKLTQLTQLDLNDNHLKSIP----RGA 100 (174)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccC----hhHhCCcchhhEEECCCCccceeC----HHH
Confidence 456667777666653 12344556667777777777665321 123455677777777777776421 123
Q ss_pred hccCCCcCEEEccCCCCChh--cHHHHHHHHhcCC
Q psy18075 671 MKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFG 703 (999)
Q Consensus 671 L~~~~sL~~LdLs~N~Is~e--g~~~L~~~L~~l~ 703 (999)
+..+++|++|+|++|++... .+..+...+....
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 56677788888888877654 3455555555443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.3e-07 Score=90.19 Aligned_cols=118 Identities=22% Similarity=0.238 Sum_probs=80.2
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc-cc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ-AL 615 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~-aL 615 (999)
-+.+++++|+++. ++..+ .++|+.|+|++|.|+.. .+..|..+++|+.|+|++|.|+. +.. .+
T Consensus 14 ~~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~ 77 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTA-----IPTGVF 77 (174)
T ss_dssp SSEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCC-----CCTTTT
T ss_pred CcEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCc-----cChhHh
Confidence 4677777777753 22222 36788888888888753 24456678889999999998873 333 34
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcc--hhhHHHhhccC
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNK 674 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g--~~~L~~~L~~~ 674 (999)
..+++|+.|+|++|.|+... ...+..+++|+.|+|++|++.... ...+...+...
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIP----RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred CCcchhhEEECCCCccceeC----HHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 67888999999999887322 234667789999999999887542 34444444433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.8e-06 Score=96.40 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=7.4
Q ss_pred CCCccEEEccCCccC
Q psy18075 496 CFALEELKLNNNGLG 510 (999)
Q Consensus 496 c~~L~~L~Ls~n~Lt 510 (999)
|++|+.++|.+|+++
T Consensus 179 c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT 193 (401)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cccCCeeecCCCcce
Confidence 445555555554443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.98 E-value=6e-06 Score=91.77 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=28.4
Q ss_pred hhhcccCceeeccC-CCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 587 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 587 L~~~~~Lr~LdLS~-N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
|..+++|+.|+|++ |.|+. .....|..+++|+.|+|++|.|+.. .+.+|..+++|+.|+|++|+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccc
Confidence 33444444445443 44442 1112344444555555555544421 1223344455555555555544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.98 E-value=4.1e-06 Score=96.16 Aligned_cols=213 Identities=14% Similarity=0.217 Sum_probs=124.9
Q ss_pred cchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcC
Q psy18075 451 IPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKK 530 (999)
Q Consensus 451 ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~ 530 (999)
+|..+..++...+..+ +|+.+.|.++ +...+...| ..| +|+.+.|.+ .+...+.. +
T Consensus 120 ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF------~~~-~L~~i~lp~-~l~~I~~~----a---------- 175 (401)
T 4fdw_A 120 LPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAF------FNS-TVQEIVFPS-TLEQLKED----I---------- 175 (401)
T ss_dssp CCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTT------TTC-CCCEEECCT-TCCEECSS----T----------
T ss_pred ECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhc------CCC-CceEEEeCC-CccEehHH----H----------
Confidence 4555555555555444 7999999877 766665555 235 799999986 44322221 1
Q ss_pred CCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccc
Q psy18075 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 610 (999)
Q Consensus 531 ~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~ 610 (999)
+..+.+|+.++++.|++..-+... |. +.+|+.+.|..+ ++..+- .+|..|++|+.++|..| +. .
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~----~aF~~~~~L~~l~l~~~-l~-----~ 239 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGS----QAFLKTSQLKTIEIPEN-VS-----T 239 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECT----TTTTTCTTCCCEECCTT-CC-----E
T ss_pred hhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehh----hHhhCCCCCCEEecCCC-cc-----C
Confidence 223456999999998887544332 22 578888888854 554332 35667888999988765 22 2
Q ss_pred ccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhH-HHhhccCCCcCEEEccCCCCCh
Q psy18075 611 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL-VKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 611 L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L-~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
+........+|+.+.|.. .++..+ ..++..|++|+.+++.+|.+.......+ ..++..|++|+.++|.. .+..
T Consensus 240 I~~~aF~~~~L~~i~lp~-~i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPN-GVTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp ECTTTTTTCCCSEEEEET-TCCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred ccccccccCCccEEEeCC-CccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 332222235677777743 344333 2456667777777777765541111111 13456677777777763 3443
Q ss_pred hcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 690 EGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 690 eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
-| ..++..+.+|+.+.+..+
T Consensus 314 I~----~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 314 LG----QGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EC----TTTTTTCCSCCEEEECTT
T ss_pred Eh----hhhhcCCCCccEEEECcc
Confidence 22 134556677777766543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.88 E-value=6.4e-06 Score=91.51 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=45.9
Q ss_pred HhhcccccccccCC-CccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchH
Q psy18075 559 FKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 637 (999)
Q Consensus 559 L~~~~sLe~LdLs~-N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~ 637 (999)
|..+.+|+.|+|++ |.|+.. ....|..+++|+.|+|++|.|+. .....+..+++|+.|+|++|.|+...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~-- 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRF----VAPDAFHFTPRLSRLNLSFNALESLS-- 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCE----ECTTGGGSCSCCCEEECCSSCCSCCC--
T ss_pred CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccce----eCHHHhcCCcCCCEEeCCCCccceeC--
Confidence 44455566666664 655532 12344555666666666666653 12234455666666666666664221
Q ss_pred HHHHhccCCCCCCEEEccCCCCCC
Q psy18075 638 SIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 638 ~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
...+. ...|+.|+|.+|++..
T Consensus 97 --~~~~~-~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 --WKTVQ-GLSLQELVLSGNPLHC 117 (347)
T ss_dssp --STTTC-SCCCCEEECCSSCCCC
T ss_pred --HHHcc-cCCceEEEeeCCCccC
Confidence 11111 2226666666666553
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=82.47 Aligned_cols=67 Identities=30% Similarity=0.366 Sum_probs=33.2
Q ss_pred hhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 588 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 588 ~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
..+++|+.|+|++|.|.. +..++..+..+++|+.|+|++|.|++.. .+ ..+... +|++|+|++|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSER--EL-DKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCch--hh-hhcccC-CcceEEccCCcCc
Confidence 345666666666666652 2223333344555666666666555321 11 112222 5555555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=79.57 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=67.5
Q ss_pred EEccCCCCCchhHHHHHHHH-hhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC
Q psy18075 540 FIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 618 (999)
Q Consensus 540 L~Ls~N~L~d~g~~~L~~~L-~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l 618 (999)
++++.|+.. .+..+...+ ..+++|+.|+|++|.|+. +..++..+..+++|+.|+|++|.|.+. ..+ ..+..+
T Consensus 148 l~l~~N~~~--~~~~~l~i~~~~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l-~~l~~l 220 (267)
T 3rw6_A 148 IDVVLNRRS--CMAATLRIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSE--REL-DKIKGL 220 (267)
T ss_dssp CCCCTTSHH--HHHHHHHHHHHHCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSG--GGG-GGGTTS
T ss_pred ccccCCHHH--HHHHHHHHHHhhCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCc--hhh-hhcccC
Confidence 455666432 222222222 457899999999999985 234556667889999999999999853 222 223334
Q ss_pred CCCcEEEcCCCCCCcc---chHHHHHhccCCCCCCEEE
Q psy18075 619 PSLAILNLGDCLLKSA---GASSIAKYLTDNTTLEDVN 653 (999)
Q Consensus 619 ~sL~~LdLs~N~L~d~---g~~~La~aL~~~~~L~~Ld 653 (999)
+|++|+|.+|.+... ...+....+..+++|+.||
T Consensus 221 -~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 -KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 899999999998641 1122334445556776665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0061 Score=68.92 Aligned_cols=108 Identities=12% Similarity=0.176 Sum_probs=51.4
Q ss_pred HhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchh
Q psy18075 586 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 665 (999)
Q Consensus 586 aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~ 665 (999)
+|..|..|+.+.+..+... .-..++..+..|+.+.+.. .++..|. .++..|.+|+.++|..+ ++.-|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~-- 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQIL-- 326 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEEC--
T ss_pred eeeecccccEEecccccce-----ecCcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEeh--
Confidence 3444555666555443211 0011233445555555542 2322221 34555666777776554 22211
Q ss_pred hHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 666 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 666 ~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
..++..|.+|+.+.|..+ +..-| ..++..+.+|+.+.+.++
T Consensus 327 --~~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 --DDAFAGCEQLERIAIPSS-VTKIP----ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCBCC----GGGGTTCTTCCEEEESSC
T ss_pred --HhHhhCCCCCCEEEECcc-cCEEh----HhHhhCCCCCCEEEECCc
Confidence 124556667777776543 22211 135566677777766554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0047 Score=69.93 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 507 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n 507 (999)
.+..++...+..|.+|+.+.|.++.. ..+-..+ ..|.+|+.+.+..+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F------~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLF------SGCGKLKSIKLPRN 195 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTT------TTCTTCCBCCCCTT
T ss_pred cccccchhhhcccCCCcEEecCCccc-eeccccc------cCCCCceEEEcCCC
Confidence 33334444455566777777755432 2222222 23456666666543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.088 Score=59.35 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCC
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 601 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N 601 (999)
.+.+|+.+.+..+... -+ ..+|..+.+|+.+.+..+ ++..+ ..++..+..|+.+.+..+
T Consensus 160 ~c~~L~~i~l~~~~~~-I~----~~~F~~c~~L~~i~l~~~-~~~I~----~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 160 TCESLEYVSLPDSMET-LH----NGLFSGCGKLKSIKLPRN-LKIIR----DYCFAECILLENMEFPNS 218 (394)
T ss_dssp TCTTCCEEECCTTCCE-EC----TTTTTTCTTCCBCCCCTT-CCEEC----TTTTTTCTTCCBCCCCTT
T ss_pred ccCCCcEEecCCccce-ec----cccccCCCCceEEEcCCC-ceEeC----chhhccccccceeecCCC
Confidence 3456777777654321 11 123555677777777665 33221 124445666666665543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.28 Score=55.18 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccch
Q psy18075 558 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGA 636 (999)
Q Consensus 558 ~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~ 636 (999)
+|..+..|+.+.+..+..+ .| ..++..++.|+.+.+..+ +. .+. .++..|.+|+.+.|..+ ++..|.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~~-i~-----~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IG----TGAFMNCPALQDIEFSSR-IT-----ELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-EC----TTTTTTCTTCCEEECCTT-CC-----EECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eeeecccccEEecccccce-ec----CcccccccccccccCCCc-cc-----ccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 4666788888888765432 21 235667899999998643 32 232 35667889999999864 544442
Q ss_pred HHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCC
Q psy18075 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 713 (999)
Q Consensus 637 ~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N 713 (999)
.++..|.+|+.+.|..+ ++.-|. .++.+|.+|+.+++.++.. ...++..+..|+.+.+..+
T Consensus 328 ----~aF~~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 ----DAFAGCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ----TTTTTCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHH-------HHHTCBCCCCC--------
T ss_pred ----hHhhCCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCC
Confidence 56778899999999765 443332 3577899999999988653 1245667788888876554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=84.24 E-value=0.91 Score=50.40 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred HhhhcccCceeeccCCCCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcch
Q psy18075 586 AFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 664 (999)
Q Consensus 586 aL~~~~~Lr~LdLS~N~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~ 664 (999)
++..+..|+.+.+..+ +. .+. .++..+.+|+.+.+..+ +...+. .++..|.+|+.+.+.++.+..-|.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~-----~I~~~aF~~~~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VT-----SIGSFLLQNCTALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp TTTTCSSCCEEEECTT-CC-----EECTTTTTTCTTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEECT
T ss_pred cccCCccceEEEcCCC-cc-----EeCccccceeehhcccccccc-ceeccc----cccccccccccccccccccceehh
Confidence 3444566666666543 22 121 13344556666666443 322221 234555666666666554443221
Q ss_pred hhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 665 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 665 ~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
.++.+|.+|+.+.|..+ +..-| ..++..+.+|+.+.+..
T Consensus 304 ----~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 ----RVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp ----TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCCCCCCT
T ss_pred ----hhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCCCCCEEEECC
Confidence 23455666666666433 22211 12455556666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 999 | ||||
| d2grrb1 | 157 | a.118.12.1 (B:431-587) Ran-GTPase activating prote | 6e-20 | |
| d2grrb1 | 157 | a.118.12.1 (B:431-587) Ran-GTPase activating prote | 4e-13 | |
| d2grrb1 | 157 | a.118.12.1 (B:431-587) Ran-GTPase activating prote | 1e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-19 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-11 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-11 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-10 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 7e-10 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 0.001 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 6e-05 |
| >d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain family: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain domain: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (211), Expect = 6e-20
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 781 VTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSP 840
V+ FLA PS LGP + L + ++ ++ + A +KVSS+ T++
Sbjct: 4 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AFLKVSSVFKDEATVRMA 59
Query: 841 SSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVR 900
+ L ++ FN +S +T LLVH+GL+K EDK K NL G + A+
Sbjct: 60 V---QDAVDALMQKAFNSSSF--NSNTFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALN 113
Query: 901 LLSEAKLLPSLTESQLLACM 920
+ + P LLA +
Sbjct: 114 HMVQQDYFPKALAPLLLAFV 133
|
| >d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain family: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain domain: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (160), Expect = 4e-13
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 174 ESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLI 233
E ++ A +KVSS+ T+ ++ + L ++ FN +S +T LLVH+GL+
Sbjct: 37 EKVVSAFLKVSSVFKDEATV-RMAVQDAVDALMQKAFNSSSF--NSNTFLTRLLVHMGLL 93
Query: 234 KCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACM 274
K EDK K NL G + A+ + + P LLA +
Sbjct: 94 KSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFV 133
|
| >d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain family: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain domain: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (96), Expect = 1e-04
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 78 VTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSL 137
V+ FLA PS LGP + L + ++ ++ + A +KVSS+ T++
Sbjct: 4 VSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVS----AFLKVSSVFKDEATVRMA 59
Query: 138 TV-LSCSLMKSTVSLKTENLVFVLT 161
+LM+ + + N LT
Sbjct: 60 VQDAVDALMQKAFNSSSFNSNTFLT 84
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 88.8 bits (218), Expect = 2e-19
Identities = 110/346 (31%), Positives = 163/346 (47%), Gaps = 12/346 (3%)
Query: 377 KLSFAGQGLKLDN--KEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHF 434
+ S G+ LKLD ED K + + E + + L GNT+G AA+ +++ ++ +
Sbjct: 2 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 435 KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSS 494
+ A + D+FTGR+K EIP+ALR L +L + LSDNAFGP E L D L
Sbjct: 62 EIAEFSDIFTGRVKDEIPEALRLLLQ-ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 495 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 554
L N +KK + L+ I GRNRLEN K
Sbjct: 121 TPLEHLYLHNNGL---GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177
Query: 555 LAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQ 613
A F+ + L V+M QNGI GI L + L+ L+L DNT T+ G+ L
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237
Query: 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 671
AL P+L L L DCLL + GA+++ + +N L+ + L NEI + L +
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 672 KNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDE 714
K L + ++ N+F EE V+E+ ++ + G L+D E
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (158), Expect = 1e-11
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 619 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKL 677
L +L L DC + + SS+A L N +L +++L+ N + G L LV++++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 678 KQINVSENQFGEEGVEEMEKLMKS 701
+Q+ + + + EE + ++ L K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKD 452
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (152), Expect = 7e-11
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTI 603
++V + + L +++ N + G+ L + LR L L D +
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381
Query: 604 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQ 662
+ L L SL L+L + L AG + + + LE + L S +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441
Query: 663 GGLDLVKAMKNKTKLKQI 680
L K+K L+ I
Sbjct: 442 MEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (149), Expect = 1e-10
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 592 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 651
+++ L++ ++ L L L ++ L DC L A I+ L N L +
Sbjct: 3 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 652 VNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 687
+NL NE+ G +++ ++ K++++++
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (141), Expect = 1e-09
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRH 595
L+V + + LAA +L +++ N + GI L ++ + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 596 LNLNDNTITYKGAIPLGQALSKLPSLAIL 624
L L D + + L PSL ++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (138), Expect = 3e-09
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624
++ +++ + L + + + L+D +T + AL P+LA L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 625 NLGDCLLKSAGASSIAKYL-TDNTTLEDVNL 654
NL L G + + L T + ++ ++L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (135), Expect = 6e-09
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 604
L + L + ++ + + + G+ +S A N L LNL N +
Sbjct: 12 EELSDARWAELLPLLQQCQVVR---LDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68
Query: 605 YKGAIPLGQAL-SKLPSLAILNLGDC 629
G + Q L + + L+L +C
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 7e-07
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
L L L+D LA L + +L EL L+NN LG G L +++
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLA--NHSLRELDLSNNCLGDAGILQLVESVRQ----- 423
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 565
L+ + E L A+ K +L
Sbjct: 424 ----PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 2e-06
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 683
L++ L A + + L + L ++ D+ A++ L ++N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 684 ENQFGEEGVEEMEKLMKS 701
N+ G+ GV + + +++
Sbjct: 64 SNELGDVGVHCVLQGLQT 81
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 528
+ LD+ L LL+ + ++L++ GL CK +S AL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQ-----CQVVRLDDCGLTEARCKDISSALRVNP--- 55
Query: 529 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 564
AL N L + G + +
Sbjct: 56 -------ALAELNLRSNELGDVGVHCVLQGLQTPSC 84
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 36/116 (31%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQA 465
L L L + ++ ++A L +
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHS-------------------------------- 398
Query: 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 521
L ELDLS+N G G+ L + +R C LE+L L + L
Sbjct: 399 ---LRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 6e-06
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 406 LVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQA 465
+ SL+++ L + L + + + L T +I ALR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVR--LDDCGLTEARCKDISSALRVNPA----- 56
Query: 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG 508
L EL+L N G +GV + L++ C +++L L N
Sbjct: 57 ---LAELNLRSNELGDVGVHCVLQGLQTPSC-KIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 499 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 558
++ L + L L L C +V L K +++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQC-------------QVVRLDDCGLTEARCKDISSA 50
Query: 559 FKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDN 601
+ L + + N + VG+ + + ++ L+L +
Sbjct: 51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 9/56 (16%), Positives = 26/56 (46%)
Query: 646 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 701
+ L + L ++S L + L+++++S N G+ G+ ++ + ++
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.9 bits (136), Expect = 7e-10
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 17/170 (10%)
Query: 484 VEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 542
VE + LR L+E+ +NN + + L +A + + F
Sbjct: 3 VESCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHI----------EKFSL 51
Query: 543 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 602
+ + A+ L + + +L + + N + + L + +++ ++
Sbjct: 52 ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111
Query: 603 ITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ + + + A+ + SL + + + +++ L N
Sbjct: 112 QSVLGNQVEMDMMMAIEENESLLRVGISFASM--EARHRVSEALERNYER 159
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/152 (13%), Positives = 52/152 (34%), Gaps = 16/152 (10%)
Query: 462 LQQAGARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 520
L++ L E+++++ + L + +S E+ L N + + + L +
Sbjct: 10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI--EKFSLANTAISDSEARGLIEL 67
Query: 521 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 579
+ +V N L E L +++ + +G
Sbjct: 68 IETSPSL----------RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117
Query: 580 --ITALSDAFEENKNLRHLNLNDNTITYKGAI 609
+ A EEN++L + ++ ++ + +
Sbjct: 118 QVEMDMMMAIEENESLLRVGISFASMEARHRV 149
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 481 PIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 539
VE ++++ LEE+ LNN + + K ++AL +K
Sbjct: 2 STDVEETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKK 50
Query: 540 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-- 597
F R + A LA + K TL+ + + N I GI AL +A + N +L L
Sbjct: 51 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 110
Query: 598 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 649
+ + + L K +L + + +N L
Sbjct: 111 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 999 | |||
| d2grrb1 | 157 | Ran-GTPase activating protein 1 (RanGAP1), C-termi | 100.0 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.97 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.94 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.93 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.92 | |
| d2grrb1 | 157 | Ran-GTPase activating protein 1 (RanGAP1), C-termi | 99.9 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.63 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.49 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.46 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.42 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.42 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.39 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.38 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.37 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.36 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.33 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.32 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.29 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.26 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.23 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.22 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.21 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.98 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.97 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.92 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.91 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.81 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.77 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.66 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.55 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.37 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.09 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.08 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.03 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.03 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.8 |
| >d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain family: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain domain: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-37 Score=294.22 Aligned_cols=139 Identities=29% Similarity=0.399 Sum_probs=129.8
Q ss_pred cccccccccCCcHHHHhccCcchHHHHHHHhhcCccchhHHHHHHHHHHhhccccCCCCcCCCCchhHHHHHHHHHHHhh
Q psy18075 778 QHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSPSSSLFECTKVLYRELFN 857 (999)
Q Consensus 778 ~~~~~~f~~~Ps~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~ 857 (999)
|+++++|+++||+++|++||++| +.+|.|+++ +.|.++++.+||||||+|+++++++. ||++++|+|||++|+
T Consensus 1 p~d~~~FL~~PS~ekl~~lg~kr-s~li~qq~d---~~d~e~~~~af~kIssv~~dd~~vk~---aald~~daL~k~aF~ 73 (157)
T d2grrb1 1 PADVSTFLAFPSPEKLLRLGPKS-SVLIAQQTD---TSDPEKVVSAFLKVSSVFKDEATVRM---AVQDAVDALMQKAFN 73 (157)
T ss_dssp CCCHHHHHHSCCHHHHHHTCTTH-HHHHHHTSC---TTCHHHHHHHHHHHHTTCCSSHHHHH---HHHHHHHHHHHHHHT
T ss_pred CcCHHHHhcCCCHHHHHHhCchH-HHHHHHhhc---cccHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHh
Confidence 57899999999999999999999 888889876 88999999999999999999988775 999999999999997
Q ss_pred hhhccCcchhhhHHHHHHhccccccccccccccCcccHHHHHHHHHhcCCCCCcCHHHHHHHhhcCCcc
Q psy18075 858 WASNSDKLSTVTNALLVHLGLIKCEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACMKLMDEK 926 (999)
Q Consensus 858 ~~~~~~~~~~~~~~llv~lgllk~e~k~~k~~~~~~g~~~~l~~~~~~~~fp~~~~~~l~~fl~~~~~~ 926 (999)
++. .+.+.+.|+||||||||||||| ||++||++||++||+||++|+|||++++++|++|++|+.-.
T Consensus 74 ~~~--~q~~~~~n~LLV~lGLLKSEdK-~k~~~~l~g~~~aL~~av~q~yFp~~~~~~l~aF~~kp~~~ 139 (157)
T d2grrb1 74 SSS--FNSNTFLTRLLVHMGLLKSEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFVTKPNSA 139 (157)
T ss_dssp STT--CCHHHHHHHHHHHTTSSCCSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHHHHHSCCHH
T ss_pred ccc--ccHHHHHHHHHHHHhchhhhhh-ccCCCCchHHHHHHHHHHhcccccHHHHHHHHHHHhCcccc
Confidence 774 6678899999999999999996 99999999999999999999999999999999999999433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.97 E-value=2.8e-30 Score=286.99 Aligned_cols=310 Identities=35% Similarity=0.522 Sum_probs=268.7
Q ss_pred ChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCc
Q psy18075 389 NKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGAR 468 (999)
Q Consensus 389 s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~s 468 (999)
+.++++.+..++..+.+|+.|+|++|.|+++++..|+.++..+++++.+...++..++.....+..+..+...+. .+++
T Consensus 16 ~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~ 94 (344)
T d2ca6a1 16 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL-KCPK 94 (344)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT-TCTT
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHh-hCCC
Confidence 778899999999999999999999999999999999999999998877777777777777778888888877665 4789
Q ss_pred ccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCC
Q psy18075 469 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLE 548 (999)
Q Consensus 469 L~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~ 548 (999)
|++|+|++|.+++.++..++..+... ++|++|+|++|++++.+...++.++...... ......+.|+.|.+++|+++
T Consensus 95 L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~-~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 95 LHTVRLSDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNGLGPQAGAKIARALQELAVN-KKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHC--TTCCEEECCSSCCHHHHHHHHHHHHHHHHHH-HHHHTCCCCCEEECCSSCCT
T ss_pred cccccccccccccccccchhhhhccc--ccchheecccccccccccccccccccccccc-cccccCcccceeeccccccc
Confidence 99999999999999999999998754 5999999999999999999998887553210 01112357999999999999
Q ss_pred chhHHHHHHHHhhcccccccccCCCccCchhhhh-hhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 549 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA-LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 549 d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~-La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
+.++..++.++..+++|++|+|++|+|++.|+.. +..++..+++|+.|+|++|.+++.|+..++.++..+++|++|+|+
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls 251 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence 9999999999999999999999999999988654 667788899999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHhccCC--CCCCEEEccCCCCCCcchhhHHHhhc-cCCCcCEEEccCCCCChhc--HHHHHHHHhcC
Q psy18075 628 DCLLKSAGASSIAKYLTDN--TTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEG--VEEMEKLMKSF 702 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~--~~L~~LdLs~N~I~~~g~~~L~~~L~-~~~sL~~LdLs~N~Is~eg--~~~L~~~L~~l 702 (999)
+|.|++.|+..++.++... +.|++|+|++|+|+.+|+..++.++. ++++|++|+|++|+|+.++ ...+...+...
T Consensus 252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~~~~~~~ 331 (344)
T d2ca6a1 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331 (344)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHHHHHHHc
Confidence 9999999999999998764 78999999999999999999999996 5789999999999997754 55566655544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-26 Score=261.59 Aligned_cols=346 Identities=20% Similarity=0.245 Sum_probs=262.0
Q ss_pred ChhhHHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhC-hhh
Q psy18075 356 DVSDILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKH-EHF 434 (999)
Q Consensus 356 ~~~~I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~-~~L 434 (999)
...++.+++..+. .++.|+|++|++ ++++++.++.++..+++|++|||++|.|++.++..+++++... ..|
T Consensus 15 ~~~~~~~l~~~l~-----~l~~L~L~~~~i---~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L 86 (460)
T d1z7xw1 15 SDARWAELLPLLQ-----QCQVVRLDDCGL---TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86 (460)
T ss_dssp CHHHHHHHHHHHT-----TCSEEEEESSCC---CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred ChHHHHHHHHhCC-----CCCEEEeCCCCC---CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCC
Confidence 3455566665553 366899999998 8999999999999999999999999999999999999887642 244
Q ss_pred HHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccC-------------------
Q psy18075 435 KRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSC------------------- 495 (999)
Q Consensus 435 k~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~------------------- 495 (999)
+.+... .+.+. ..++..+..++ ..+++|++|+|++|.|++.++..+...+....
T Consensus 87 ~~L~L~---~n~it---~~~~~~l~~~l-~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 87 QKLSLQ---NCCLT---GAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp CEEECT---TSCCB---GGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CEEECC---CCCcc---ccccccccchh-hccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 332221 12211 22344444433 35788999999999998888888877654321
Q ss_pred --------CCCccEEEccCCccCchhhhHHHHHHhhhc-----------------------------cC-----------
Q psy18075 496 --------CFALEELKLNNNGLGITGCKLLSKALHDCY-----------------------------ES----------- 527 (999)
Q Consensus 496 --------c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~-----------------------------~~----------- 527 (999)
.+.++.++++++.+...+...+...+.... ..
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~ 239 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence 124455555555544444444433332211 10
Q ss_pred --------CcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhh-cccCceeec
Q psy18075 528 --------SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNL 598 (999)
Q Consensus 528 --------s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~-~~~Lr~LdL 598 (999)
.........++.|++++|.+...+...+...+..++.++.+++++|.|++.|+..++..+.. +..|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l 319 (460)
T d1z7xw1 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 319 (460)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 00111345788888988888888887788888888899999999999999988888887654 457999999
Q ss_pred cCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccC-CCCCCEEEccCCCCCCcchhhHHHhhccCCCc
Q psy18075 599 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 677 (999)
Q Consensus 599 S~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~-~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL 677 (999)
++|.+++.++..++..+..+++|++|+|++|.+++.|+..++.++.. ++.|++|+|++|.|++.|+.+++..+..+++|
T Consensus 320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 399 (460)
T d1z7xw1 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399 (460)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence 99999999988888888888899999999999999999899988865 58899999999999999999999999999999
Q ss_pred CEEEccCCCCChhcHHHHHHHHhcCC-CCCEEeCCCCCCC
Q psy18075 678 KQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDDEGE 716 (999)
Q Consensus 678 ~~LdLs~N~Is~eg~~~L~~~L~~l~-~L~~L~Ls~N~~e 716 (999)
++|+|++|+|+++|+..+...++.+. .|+.|+++++...
T Consensus 400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 99999999999999999999888665 6999999887654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-24 Score=245.80 Aligned_cols=351 Identities=23% Similarity=0.285 Sum_probs=268.0
Q ss_pred ccCCccccCCCCChhh--HHHhhhhhcccCCCCccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHH
Q psy18075 344 NHKGRMTDKPNDDVSD--ILKKLESISVESGQDSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAA 421 (999)
Q Consensus 344 ~~~l~~ld~~~~~~~~--I~~ll~~L~~~~~~~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~ 421 (999)
+..++.++++.+...+ +..++..+.. ..+.++.|++++|.+ ++.++..++.++..+++|++|+|++|.|++.++
T Consensus 54 ~~~L~~LdLs~N~i~~~~~~~l~~~l~~-~~~~L~~L~L~~n~i---t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~ 129 (460)
T d1z7xw1 54 NPALAELNLRSNELGDVGVHCVLQGLQT-PSCKIQKLSLQNCCL---TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 129 (460)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCS-TTCCCCEEECTTSCC---BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCCCCEEECcCCcCChHHHHHHHHHHhc-CCCCCCEEECCCCCc---cccccccccchhhccccccccccccccchhhhh
Confidence 3345556666655533 3445555543 345799999999998 889999999999999999999999999999998
Q ss_pred HHHHHHHhhChh----------------hHH---Hhhhh--cccCCCccc--cchHHHHhhhhh----------------
Q psy18075 422 KAIADALSKHEH----------------FKR---ALWKD--MFTGRMKTE--IPDALRYLGNGL---------------- 462 (999)
Q Consensus 422 ~~L~~~L~~~~~----------------Lk~---ll~~n--l~t~rl~~~--ip~~l~~L~~~L---------------- 462 (999)
..+...+..... +.. .+..+ .....+... ...++..+...+
T Consensus 130 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 209 (460)
T d1z7xw1 130 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 209 (460)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred hhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888877642210 000 00000 000000000 000111111111
Q ss_pred ------------hccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcC
Q psy18075 463 ------------QQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKK 530 (999)
Q Consensus 463 ------------~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~ 530 (999)
...++.++.+++++|.+.+.++......... .+..|+.|++++|.+.......+...+..+
T Consensus 210 ~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~-~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~------ 282 (460)
T d1z7xw1 210 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAK------ 282 (460)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEECTTSCCCHHHHHHHHHHHHHC------
T ss_pred ccchhhhcccccccccccccccchhhccccccccchhhccccc-cccccccccccccccccccccccccccccc------
Confidence 1234566666666666655544433333322 235789999999998888777777777765
Q ss_pred CCCCCCccEEEccCCCCCchhHHHHHHHHhh-cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcc
Q psy18075 531 EGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI 609 (999)
Q Consensus 531 ~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~-~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~ 609 (999)
..++.+++++|.+++.|+..++..+.. .+.|+.+++++|.++..++..++..+..+++|++|+|++|.|++.|+.
T Consensus 283 ----~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~ 358 (460)
T d1z7xw1 283 ----ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358 (460)
T ss_dssp ----TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred ----ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence 349999999999999999999888765 468999999999999999999999999999999999999999999999
Q ss_pred cccccccC-CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCC-CcCEEEccCCCC
Q psy18075 610 PLGQALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT-KLKQINVSENQF 687 (999)
Q Consensus 610 ~L~~aL~~-l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~-sL~~LdLs~N~I 687 (999)
.+++++.. ++.|++|+|++|.|++.|+..|+.++..+++|++|+|++|+|++.|+..+++.++.+. .|+.|++.+|.+
T Consensus 359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence 99998864 6789999999999999999999999999999999999999999999999999998655 799999999999
Q ss_pred ChhcHHHHHHHHhcCCCCCEEe
Q psy18075 688 GEEGVEEMEKLMKSFGMAAALV 709 (999)
Q Consensus 688 s~eg~~~L~~~L~~l~~L~~L~ 709 (999)
..++...+....+.+|+|++|.
T Consensus 439 ~~~~~~~l~~l~~~~~~l~~~~ 460 (460)
T d1z7xw1 439 SEEMEDRLQALEKDKPSLRVIS 460 (460)
T ss_dssp CHHHHHHHHHHHHHCTTSEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEeC
Confidence 9999999999999999998873
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.92 E-value=1.4e-24 Score=240.60 Aligned_cols=287 Identities=19% Similarity=0.254 Sum_probs=243.9
Q ss_pred CCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCC------CccHHHH
Q psy18075 414 NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFG------PIGVEGL 487 (999)
Q Consensus 414 N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~------~~gv~~L 487 (999)
+.++.+..+.+...|+.+..++.+..... + .-..++..++..+. ..++|+.|+|+++.++ +.++..+
T Consensus 13 ~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n---~---i~~~~~~~l~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 85 (344)
T d2ca6a1 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGN---T---IGTEAARWLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLL 85 (344)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTS---E---ECHHHHHHHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCC---c---CCHHHHHHHHHHHH-hCCCCCEEECCCCcccccccccchHHHHH
Confidence 56788889999999988887754322221 1 12456677766553 5789999999988664 2345666
Q ss_pred HHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHh-------
Q psy18075 488 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK------- 560 (999)
Q Consensus 488 ~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~------- 560 (999)
+..+. .|++|++|+|++|.++..+...++..+..++ +|++|++++|.+++.+...++.++.
T Consensus 86 ~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~----------~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~ 153 (344)
T d2ca6a1 86 LQALL--KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT----------PLEHLYLHNNGLGPQAGAKIARALQELAVNKK 153 (344)
T ss_dssp HHHHT--TCTTCCEEECCSCCCCTTTHHHHHHHHHHCT----------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--hCCCcccccccccccccccccchhhhhcccc----------cchheecccccccccccccccccccccccccc
Confidence 77664 4579999999999999999999999998764 5999999999999999888877663
Q ss_pred --hcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccc-ccccccCCCCCcEEEcCCCCCCccchH
Q psy18075 561 --KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP-LGQALSKLPSLAILNLGDCLLKSAGAS 637 (999)
Q Consensus 561 --~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~-L~~aL~~l~sL~~LdLs~N~L~d~g~~ 637 (999)
..+.|+.|++++|.+++.++..++.++..+++|+.|+|++|.|+++|+.. +..++..+++|+.|+|++|.+++.|+.
T Consensus 154 ~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 233 (344)
T d2ca6a1 154 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233 (344)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred cccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence 35689999999999999999999999999999999999999999988654 677888899999999999999999999
Q ss_pred HHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhcc--CCCcCEEEccCCCCChhcHHHHHHHHh-cCCCCCEEeCCCCC
Q psy18075 638 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN--KTKLKQINVSENQFGEEGVEEMEKLMK-SFGMAAALVLEDDE 714 (999)
Q Consensus 638 ~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~--~~sL~~LdLs~N~Is~eg~~~L~~~L~-~l~~L~~L~Ls~N~ 714 (999)
.++.++..+++|++|+|++|.|++.|+..++.++.. +++|++|+|++|.|+.+|...+..++. +++.|+.|++++|.
T Consensus 234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 999999999999999999999999999999999975 568999999999999999999999996 68899999999998
Q ss_pred CCCCC
Q psy18075 715 GECSD 719 (999)
Q Consensus 715 ~e~ed 719 (999)
..+++
T Consensus 314 ~~~~~ 318 (344)
T d2ca6a1 314 FSEED 318 (344)
T ss_dssp SCTTS
T ss_pred CCCcc
Confidence 76544
|
| >d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain family: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain domain: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.1e-24 Score=207.67 Aligned_cols=133 Identities=29% Similarity=0.407 Sum_probs=120.7
Q ss_pred ccchhHhhcCCcHHHHhhcCCchhhhhHhhhcCCchhHHHHHHHHHHhhhcccccCcccccchhhhhhcccccccccccc
Q psy18075 75 QHSVTDFLAAPSVSLFNSLGPNCAQLFLDEINSEPEDRYLESMLLAIMKVSSLVPSTTTLQSLTVLSCSLMKSTVSLKTE 154 (999)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (999)
|+||++||++||+++|.+||++|+++|+|+++..++++++++| |||||++.+
T Consensus 1 p~d~~~FL~~PS~ekl~~lg~krs~li~qq~d~~d~e~~~~af----~kIssv~~d------------------------ 52 (157)
T d2grrb1 1 PADVSTFLAFPSPEKLLRLGPKSSVLIAQQTDTSDPEKVVSAF----LKVSSVFKD------------------------ 52 (157)
T ss_dssp CCCHHHHHHSCCHHHHHHTCTTHHHHHHHTSCTTCHHHHHHHH----HHHHTTCCS------------------------
T ss_pred CcCHHHHhcCCCHHHHHHhCchHHHHHHHhhccccHHHHHHHH----HHHHHHhcc------------------------
Confidence 7899999999999999999999999999999999999999988 999999998
Q ss_pred hhhhhhhccccccchhhHHHHHHHHhhhhcccccccccCCCCcchhhhHHHHHHHHHhhhcCCCCcHHHHHHHHhhcccc
Q psy18075 155 NLVFVLTKNHCAYHVDRYLESMLLAIMKVSSLVPSTTTLPSSSLFECTKVLYRELFNWASNSDKLSTVTNALLVHLGLIK 234 (999)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~n~lL~~~ll~k 234 (999)
+..++.++.+.+ |+|||+||+|+ +...+..+|.+|+||||+|
T Consensus 53 ------------------------d~~vk~aald~~------------daL~k~aF~~~--~~q~~~~~n~LLV~lGLLK 94 (157)
T d2grrb1 53 ------------------------EATVRMAVQDAV------------DALMQKAFNSS--SFNSNTFLTRLLVHMGLLK 94 (157)
T ss_dssp ------------------------SHHHHHHHHHHH------------HHHHHHHHTST--TCCHHHHHHHHHHHTTSSC
T ss_pred ------------------------cHHHHHHHHHHH------------HHHHHHHHhcc--cccHHHHHHHHHHHHhchh
Confidence 556666766666 99999999777 4456678888999999999
Q ss_pred ccCCCcccccchhhHHHhhhhhhccccccccchHHHHHHH
Q psy18075 235 CEDKSFKINYNLNGCMTAVRLLSEAKLLPSLTESQLLACM 274 (999)
Q Consensus 235 ~e~~~~r~~~~LqG~l~~~~~v~~vN~f~Cl~e~~~~sl~ 274 (999)
+|++ +++.|.++||+.++++++..+|||-.+...+++.+
T Consensus 95 SEdK-~k~~~~l~g~~~aL~~av~q~yFp~~~~~~l~aF~ 133 (157)
T d2grrb1 95 SEDK-VKAIANLYGPLMALNHMVQQDYFPKALAPLLLAFV 133 (157)
T ss_dssp CSSC-CCCCSCCHHHHHHHHHHTTSTTSCGGGHHHHHHHH
T ss_pred hhhh-ccCCCCchHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 9998 99999999999999999999999999988887654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.2e-16 Score=169.14 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=154.7
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
..+|++|||+++.+++.++..+. ..|++|++|+|++|.+++.+...++ .+ ++|++|+++++
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~-----~~c~~L~~L~L~~~~l~~~~~~~l~----~~----------~~L~~L~Ls~c 105 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGIL-----SQCSKLQNLSLEGLRLSDPIVNTLA----KN----------SNLVRLNLSGC 105 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHH-----TTBCCCSEEECTTCBCCHHHHHHHT----TC----------TTCSEEECTTC
T ss_pred CCCCCEEECCCCccCHHHHHHHH-----HhCCCcccccccccCCCcHHHHHHh----cC----------CCCcCcccccc
Confidence 45899999999998877765552 3578999999999999876665553 22 56999999995
Q ss_pred -CCCchhHHHHHHHHhhcccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCC--CCCcCCcccccccccCCCCC
Q psy18075 546 -RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDN--TITYKGAIPLGQALSKLPSL 621 (999)
Q Consensus 546 -~L~d~g~~~L~~~L~~~~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N--~Lsd~G~~~L~~aL~~l~sL 621 (999)
.+++.|+..++. .+++|++|+|++| .+++.++..+.. ..+++|+.|+++++ .+++.++..++ ..+++|
T Consensus 106 ~~itd~~l~~l~~---~~~~L~~L~ls~c~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~i~~~~l~~l~---~~~~~L 177 (284)
T d2astb2 106 SGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSGYRKNLQKSDLSTLV---RRCPNL 177 (284)
T ss_dssp BSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTC
T ss_pred ccccccccchhhH---HHHhccccccccccccccccchhhhc--ccccccchhhhcccccccccccccccc---cccccc
Confidence 699888877654 4789999999997 588776543322 22478999999975 57776665554 358899
Q ss_pred cEEEcCCCC-CCccchHHHHHhccCCCCCCEEEccCC-CCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHH
Q psy18075 622 AILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 699 (999)
Q Consensus 622 ~~LdLs~N~-L~d~g~~~La~aL~~~~~L~~LdLs~N-~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L 699 (999)
++|++++|. +++.+... +.++++|++|+|++| .|++.|... +..+++|+.|++.++ +++.++..+...
T Consensus 178 ~~L~L~~~~~itd~~~~~----l~~~~~L~~L~L~~C~~i~~~~l~~----L~~~~~L~~L~l~~~-~~d~~l~~l~~~- 247 (284)
T d2astb2 178 VHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKEA- 247 (284)
T ss_dssp SEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHHH-
T ss_pred cccccccccCCCchhhhh----hcccCcCCEEECCCCCCCChHHHHH----HhcCCCCCEEeeeCC-CCHHHHHHHHHh-
Confidence 999999974 88777544 446799999999996 788877654 457899999999998 888888777654
Q ss_pred hcCCCCC
Q psy18075 700 KSFGMAA 706 (999)
Q Consensus 700 ~~l~~L~ 706 (999)
+++|+
T Consensus 248 --lp~L~ 252 (284)
T d2astb2 248 --LPHLQ 252 (284)
T ss_dssp --STTSE
T ss_pred --Ccccc
Confidence 45554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.1e-15 Score=160.35 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=156.8
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccchHHHHhhhhhhccCCcccEEEecCCCCCCc
Q psy18075 403 VKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPDALRYLGNGLQQAGARLVELDLSDNAFGPI 482 (999)
Q Consensus 403 ~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~ 482 (999)
..+|++|||+++.+++.+...+. ..+++|++|+|+++.+++.
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~--------------------------------------~~c~~L~~L~L~~~~l~~~ 86 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGIL--------------------------------------SQCSKLQNLSLEGLRLSDP 86 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHH--------------------------------------TTBCCCSEEECTTCBCCHH
T ss_pred CCCCCEEECCCCccCHHHHHHHH--------------------------------------HhCCCcccccccccCCCcH
Confidence 35789999999888876555443 1356899999999999887
Q ss_pred cHHHHHHHHhccCCCCccEEEccCC-ccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC-CCCchhHHHHHHHHh
Q psy18075 483 GVEGLADLLRSSCCFALEELKLNNN-GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN-RLENEGAKMLAAVFK 560 (999)
Q Consensus 483 gv~~L~~~L~s~~c~~L~~L~Ls~n-~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N-~L~d~g~~~L~~~L~ 560 (999)
++..++ .|++|++|+|++| ++++.+...++..+ ++|++|+++++ .+++.+...+.. .
T Consensus 87 ~~~~l~------~~~~L~~L~Ls~c~~itd~~l~~l~~~~-------------~~L~~L~ls~c~~~~~~~~~~~~~--~ 145 (284)
T d2astb2 87 IVNTLA------KNSNLVRLNLSGCSGFSEFALQTLLSSC-------------SRLDELNLSWCFDFTEKHVQVAVA--H 145 (284)
T ss_dssp HHHHHT------TCTTCSEEECTTCBSCCHHHHHHHHHHC-------------TTCCEEECCCCTTCCHHHHHHHHH--H
T ss_pred HHHHHh------cCCCCcCccccccccccccccchhhHHH-------------Hhccccccccccccccccchhhhc--c
Confidence 777663 3579999999996 78888877776543 34999999986 578776654322 2
Q ss_pred hcccccccccCCC--ccCchhhhhhhHHhhhcccCceeeccCC-CCCcCCcccccccccCCCCCcEEEcCCC-CCCccch
Q psy18075 561 KLKTLERVEMPQN--GIYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGA 636 (999)
Q Consensus 561 ~~~sLe~LdLs~N--~It~~g~~~La~aL~~~~~Lr~LdLS~N-~Lsd~G~~~L~~aL~~l~sL~~LdLs~N-~L~d~g~ 636 (999)
.+++|+.|+++++ .+++.++..++ ..+++|++|+|++| .+++.++..++ .+++|++|+|++| .+++.+.
T Consensus 146 ~~~~L~~L~l~~~~~~i~~~~l~~l~---~~~~~L~~L~L~~~~~itd~~~~~l~----~~~~L~~L~L~~C~~i~~~~l 218 (284)
T d2astb2 146 VSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCYDIIPETL 218 (284)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEEECTTCTTCCGGGGGGGG----GCTTCCEEECTTCTTCCGGGG
T ss_pred cccccchhhhcccccccccccccccc---cccccccccccccccCCCchhhhhhc----ccCcCCEEECCCCCCCChHHH
Confidence 2578999999986 47877765554 46899999999986 58877666554 5889999999997 6888776
Q ss_pred HHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 637 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 637 ~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.. +..+++|+.|+++++ +++.++..++.. +|+|+ +..+.++.
T Consensus 219 ~~----L~~~~~L~~L~l~~~-~~d~~l~~l~~~---lp~L~---i~~~~ls~ 260 (284)
T d2astb2 219 LE----LGEIPTLKTLQVFGI-VPDGTLQLLKEA---LPHLQ---INCSHFTT 260 (284)
T ss_dssp GG----GGGCTTCCEEECTTS-SCTTCHHHHHHH---STTSE---ESCCCSCC
T ss_pred HH----HhcCCCCCEEeeeCC-CCHHHHHHHHHh---Ccccc---ccCccCCC
Confidence 44 456799999999998 888887776653 55554 46666655
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=4.5e-14 Score=155.50 Aligned_cols=190 Identities=22% Similarity=0.250 Sum_probs=145.3
Q ss_pred ccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc
Q psy18075 464 QAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 543 (999)
Q Consensus 464 ~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls 543 (999)
..++++..|++++|.+...... ..+++|++|++++|.++..+ .+.. .++|+.|+++
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~--------~~~~~L~~L~l~~n~l~~~~------~l~~----------l~~L~~L~l~ 249 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPL--------GILTNLDELSLNGNQLKDIG------TLAS----------LTNLTDLDLA 249 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGG--------GGCTTCCEEECCSSCCCCCG------GGGG----------CTTCSEEECC
T ss_pred ccccccceeeccCCccCCCCcc--------cccCCCCEEECCCCCCCCcc------hhhc----------ccccchhccc
Confidence 3467889999999988754321 23468999999999887532 1222 2559999999
Q ss_pred CCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 544 ~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
+|++++.. .+..+++|++|++++|.++.. ..+..++.++.+.++.|.+.+ + ..+..+++++.
T Consensus 250 ~n~l~~~~------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~l~~l~~~~n~l~~-----~-~~~~~~~~l~~ 311 (384)
T d2omza2 250 NNQISNLA------PLSGLTKLTELKLGANQISNI------SPLAGLTALTNLELNENQLED-----I-SPISNLKNLTY 311 (384)
T ss_dssp SSCCCCCG------GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCSC-----C-GGGGGCTTCSE
T ss_pred cCccCCCC------cccccccCCEeeccCcccCCC------Ccccccccccccccccccccc-----c-cccchhcccCe
Confidence 99988532 256688999999999998753 235668889999999998874 2 23567889999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
|++++|.+++.. .+..+++|++|++++|+|++- ..+..+++|++|++++|+|++- . .+..++
T Consensus 312 L~ls~n~l~~l~------~l~~l~~L~~L~L~~n~l~~l------~~l~~l~~L~~L~l~~N~l~~l-----~-~l~~l~ 373 (384)
T d2omza2 312 LTLYFNNISDIS------PVSSLTKLQRLFFANNKVSDV------SSLANLTNINWLSAGHNQISDL-----T-PLANLT 373 (384)
T ss_dssp EECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCBC-----G-GGTTCT
T ss_pred EECCCCCCCCCc------ccccCCCCCEEECCCCCCCCC------hhHcCCCCCCEEECCCCcCCCC-----h-hhccCC
Confidence 999999997432 266789999999999999862 2477899999999999999862 2 378899
Q ss_pred CCCEEeCCCC
Q psy18075 704 MAAALVLEDD 713 (999)
Q Consensus 704 ~L~~L~Ls~N 713 (999)
+|+.|++++|
T Consensus 374 ~L~~L~L~~N 383 (384)
T d2omza2 374 RITQLGLNDQ 383 (384)
T ss_dssp TCSEEECCCE
T ss_pred CCCEeeCCCC
Confidence 9999999876
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.49 E-value=1.6e-14 Score=143.78 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=62.4
Q ss_pred ccccccccCCC-ccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHH
Q psy18075 563 KTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 641 (999)
Q Consensus 563 ~sLe~LdLs~N-~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~ 641 (999)
++|++|+|+++ .|++.|+..++.++..+++|++|+|++|.+++.|+..++++|..+++|++|+|++|.+++.|+..|+.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 44444444442 34444444444444444444444444444444444444444444445555555555555555555555
Q ss_pred hccCCCCCCEEEccCCC---CCCcchhhHHHhhccCCCcCEEEccCCC
Q psy18075 642 YLTDNTTLEDVNLTCNE---ISVQGGLDLVKAMKNKTKLKQINVSENQ 686 (999)
Q Consensus 642 aL~~~~~L~~LdLs~N~---I~~~g~~~L~~~L~~~~sL~~LdLs~N~ 686 (999)
++..+++|++|+|++|. +++.|+..++.++..+++|+.|+++.+.
T Consensus 95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 55555555555555442 3334455555555555555555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=5.2e-14 Score=140.11 Aligned_cols=132 Identities=11% Similarity=0.179 Sum_probs=120.7
Q ss_pred hhHHhhhcccCceeeccC-CCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 583 LSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 583 La~aL~~~~~Lr~LdLS~-N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
+......+++|++|+|++ +.++++|+..++.++..+++|++|+|++|.+++.|+..++.++..+++|++|+|++|.|++
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~ 86 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 86 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence 334445579999999997 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhccCCCcCEEEccCCC---CChhcHHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 662 QGGLDLVKAMKNKTKLKQINVSENQ---FGEEGVEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 662 ~g~~~L~~~L~~~~sL~~LdLs~N~---Is~eg~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
.|+..++.++..+++|++|+|++|. ++.+|...++.++..+++|+.|+++.+.
T Consensus 87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 9999999999999999999999874 6678899999999999999999987653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.42 E-value=2.7e-14 Score=141.56 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred cccccccccCC-CccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHH
Q psy18075 562 LKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 640 (999)
Q Consensus 562 ~~sLe~LdLs~-N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La 640 (999)
.++|++|+|++ +.|++.|+..++.++..+++|++|+|++|.+++.|+..++.++..+++++.|++++|.+++.|+..++
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~ 95 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 95 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence 34555555544 33555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhccCCCCCCEEEc--cCCCCCCcchhhHHHhhccCCCcCEEEccCCCC
Q psy18075 641 KYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 687 (999)
Q Consensus 641 ~aL~~~~~L~~LdL--s~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~I 687 (999)
.++..+++|+.++| ++|.+++.|+.+++.++..+++|+.|+++.+..
T Consensus 96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 55555555554333 344555556556666666666666666655543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.42 E-value=2.5e-15 Score=163.06 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=177.9
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccC-CCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccc
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEG-NTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIP 452 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~-N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip 452 (999)
+++.|+|+++++.- ...++..|.++++|++|+|++ |.+.. .+|
T Consensus 51 ~v~~L~L~~~~l~g-----~~~lp~~l~~L~~L~~L~Ls~~N~l~g-------------------------------~iP 94 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPK-----PYPIPSSLANLPYLNFLYIGGINNLVG-------------------------------PIP 94 (313)
T ss_dssp CEEEEEEECCCCSS-----CEECCGGGGGCTTCSEEEEEEETTEES-------------------------------CCC
T ss_pred EEEEEECCCCCCCC-----CCCCChHHhcCcccccccccccccccc-------------------------------ccc
Confidence 68899999998832 123566789999999999986 54432 234
Q ss_pred hHHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCC
Q psy18075 453 DALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG 532 (999)
Q Consensus 453 ~~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g 532 (999)
..+. .+++|++|+|++|+|.......+. .++.|+.+++++|.+...- ...+..
T Consensus 95 ~~i~--------~L~~L~~L~Ls~N~l~~~~~~~~~------~~~~L~~l~l~~N~~~~~~----p~~l~~--------- 147 (313)
T d1ogqa_ 95 PAIA--------KLTQLHYLYITHTNVSGAIPDFLS------QIKTLVTLDFSYNALSGTL----PPSISS--------- 147 (313)
T ss_dssp GGGG--------GCTTCSEEEEEEECCEEECCGGGG------GCTTCCEEECCSSEEESCC----CGGGGG---------
T ss_pred cccc--------cccccchhhhcccccccccccccc------chhhhcccccccccccccC----chhhcc---------
Confidence 4333 346899999999999665444332 2468999999999876322 222232
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccc-cccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL-ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 611 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sL-e~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L 611 (999)
.+.|+.+++++|++... ++..+..+..+ +.+++++|+++.... ..+.. ..+..++++.|.+.. .+
T Consensus 148 -l~~L~~l~l~~n~l~~~----ip~~~~~l~~l~~~l~~~~n~l~~~~~----~~~~~-l~~~~l~l~~~~~~~----~~ 213 (313)
T d1ogqa_ 148 -LPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGKIP----PTFAN-LNLAFVDLSRNMLEG----DA 213 (313)
T ss_dssp -CTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEECC----GGGGG-CCCSEEECCSSEEEE----CC
T ss_pred -Ccccceeeccccccccc----ccccccccccccccccccccccccccc----ccccc-ccccccccccccccc----cc
Confidence 35699999999998743 23445555554 789999999886532 23333 345578888887654 34
Q ss_pred cccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc
Q psy18075 612 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 691 (999)
Q Consensus 612 ~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg 691 (999)
+..+..+++|+.|++++|.+... ...+...++|+.|+|++|+|++ .++..+..+++|++|+|++|+|+..
T Consensus 214 ~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~N~l~g~- 283 (313)
T d1ogqa_ 214 SVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNNLCGE- 283 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSEEEEE-
T ss_pred ccccccccccccccccccccccc-----ccccccccccccccCccCeecc----cCChHHhCCCCCCEEECcCCccccc-
Confidence 55666788999999999988632 2346677999999999999975 3667788999999999999998742
Q ss_pred HHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 692 VEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 692 ~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
++ .+..+++|+.+++.+|.
T Consensus 284 ---iP-~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 284 ---IP-QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ---CC-CSTTGGGSCGGGTCSSS
T ss_pred ---CC-CcccCCCCCHHHhCCCc
Confidence 22 23566788888888875
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=2e-12 Score=142.18 Aligned_cols=169 Identities=21% Similarity=0.260 Sum_probs=120.6
Q ss_pred CCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCcc
Q psy18075 496 CFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 575 (999)
Q Consensus 496 c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~I 575 (999)
+++++.|++++|.++.... .+.+.+|+.|++++|++++-+ .+..+++|+.|++++|.+
T Consensus 196 l~~~~~l~l~~n~i~~~~~----------------~~~~~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l 253 (384)
T d2omza2 196 LTNLESLIATNNQISDITP----------------LGILTNLDELSLNGNQLKDIG------TLASLTNLTDLDLANNQI 253 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG----------------GGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCC
T ss_pred ccccceeeccCCccCCCCc----------------ccccCCCCEEECCCCCCCCcc------hhhcccccchhccccCcc
Confidence 3466667777666553211 112345888888888877532 355677888888888887
Q ss_pred CchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEcc
Q psy18075 576 YHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 655 (999)
Q Consensus 576 t~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs 655 (999)
++.. .+..+++|+.|++++|.+.. +. .+..++.++.+.++.|.+.+. ..+..+++++.|+++
T Consensus 254 ~~~~------~~~~~~~L~~L~l~~~~l~~-----~~-~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~l~~L~ls 315 (384)
T d2omza2 254 SNLA------PLSGLTKLTELKLGANQISN-----IS-PLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLY 315 (384)
T ss_dssp CCCG------GGTTCTTCSEEECCSSCCCC-----CG-GGTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECC
T ss_pred CCCC------cccccccCCEeeccCcccCC-----CC-ccccccccccccccccccccc------cccchhcccCeEECC
Confidence 7531 25567788888888887763 22 245677888888888887632 235667999999999
Q ss_pred CCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 656 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 656 ~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
+|+|.+.. .+..+++|++|++++|.|+. + ..+..+++|+.|++++|.-.
T Consensus 316 ~n~l~~l~------~l~~l~~L~~L~L~~n~l~~-----l-~~l~~l~~L~~L~l~~N~l~ 364 (384)
T d2omza2 316 FNNISDIS------PVSSLTKLQRLFFANNKVSD-----V-SSLANLTNINWLSAGHNQIS 364 (384)
T ss_dssp SSCCSCCG------GGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCc------ccccCCCCCEEECCCCCCCC-----C-hhHcCCCCCCEEECCCCcCC
Confidence 99998631 36789999999999999986 2 25788999999999998653
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=2.2e-13 Score=146.77 Aligned_cols=250 Identities=18% Similarity=0.229 Sum_probs=131.5
Q ss_pred CccEEEeccCCCcCCChhhHHHHHHHHhcCCCcCEEEccCCCCChhHHHHHHHHHhhChhhHHHhhhhcccCCCccccch
Q psy18075 374 DSTKLSFAGQGLKLDNKEDAKVIVDAINEVKVLVSLNLEGNTLGVNAAKAIADALSKHEHFKRALWKDMFTGRMKTEIPD 453 (999)
Q Consensus 374 ~l~~LsL~g~~L~~~s~~~~~~L~~aL~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~Lk~ll~~nl~t~rl~~~ip~ 453 (999)
.++.|++++|++..... .+|..+++|++|++++|.+.......
T Consensus 32 ~l~~L~Ls~N~i~~l~~-------~~f~~l~~L~~L~l~~n~~~~i~~~~------------------------------ 74 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKD-------GDFKNLKNLHTLILINNKISKISPGA------------------------------ 74 (305)
T ss_dssp TCCEEECCSSCCCCBCT-------TTTTTCTTCCEEECCSSCCCCBCTTT------------------------------
T ss_pred CCCEEECcCCcCCCcCh-------hHhhccccccccccccccccccchhh------------------------------
Confidence 67788888888743211 13667788888888888775421111
Q ss_pred HHHHhhhhhhccCCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCC
Q psy18075 454 ALRYLGNGLQQAGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 533 (999)
Q Consensus 454 ~l~~L~~~L~~~~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~ 533 (999)
+..++.|+.|+|++|+|...... ..+.+..|++.+|.+.......+ ..
T Consensus 75 ---------f~~l~~L~~L~l~~n~l~~l~~~---------~~~~l~~L~~~~n~l~~l~~~~~----~~---------- 122 (305)
T d1xkua_ 75 ---------FAPLVKLERLYLSKNQLKELPEK---------MPKTLQELRVHENEITKVRKSVF----NG---------- 122 (305)
T ss_dssp ---------TTTCTTCCEEECCSSCCSBCCSS---------CCTTCCEEECCSSCCCBBCHHHH----TT----------
T ss_pred ---------hhCCCccCEecccCCccCcCccc---------hhhhhhhhhccccchhhhhhhhh----hc----------
Confidence 11245677777777776544311 12366777777776653322111 11
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
...+..+....|.....+. ....+..+++|+.+++++|.++.. +.. ..++|+.|++++|.+... ...
T Consensus 123 ~~~~~~l~~~~n~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l-----~~~--~~~~L~~L~l~~n~~~~~----~~~ 189 (305)
T d1xkua_ 123 LNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTI-----PQG--LPPSLTELHLDGNKITKV----DAA 189 (305)
T ss_dssp CTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCSC-----CSS--CCTTCSEEECTTSCCCEE----CTG
T ss_pred cccccccccccccccccCC--CccccccccccCccccccCCcccc-----Ccc--cCCccCEEECCCCcCCCC----Chh
Confidence 1234555555554332211 112344455666666666665532 111 134566666666655532 233
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHH
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 693 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~ 693 (999)
.+..++.++.|++++|.+.... ...+..+++|+.|+|++|+|+. ++..+..+++|++|+|++|+|+.-+..
T Consensus 190 ~~~~~~~l~~L~~s~n~l~~~~----~~~~~~l~~L~~L~L~~N~L~~-----lp~~l~~l~~L~~L~Ls~N~i~~i~~~ 260 (305)
T d1xkua_ 190 SLKGLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSN 260 (305)
T ss_dssp GGTTCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred Hhhccccccccccccccccccc----cccccccccceeeecccccccc-----cccccccccCCCEEECCCCccCccChh
Confidence 4455566666666666665432 1334445666666666666653 334455566666666666666542211
Q ss_pred HH--HHHHhcCCCCCEEeCCCCC
Q psy18075 694 EM--EKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 694 ~L--~~~L~~l~~L~~L~Ls~N~ 714 (999)
.+ ........+|+.|++++|.
T Consensus 261 ~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 261 DFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSS
T ss_pred hccCcchhcccCCCCEEECCCCc
Confidence 11 1123344566666666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.3e-13 Score=144.59 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=128.3
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
++|++|+|++|.|+......|. .+++|++|+|++|+|+... ..+..++|++|+|++|+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~------~l~~L~~L~L~~N~l~~l~----------------~~~~l~~L~~L~Ls~N~ 88 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQ----------------VDGTLPVLGTLDLSHNQ 88 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEE----------------CCSCCTTCCEEECCSSC
T ss_pred cCCCEEECcCCcCCCcCHHHhh------ccccccccccccccccccc----------------ccccccccccccccccc
Confidence 4788888888888766554442 3467888888888876321 11234568888888888
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+... ...+..+++|+.|++++|.+.... ...+..+++++.|++++|.+..- -...+..++.|+.|++
T Consensus 89 l~~~-----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~l~~L~l~~n~l~~l----~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 89 LQSL-----PLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTL----PPGLLTPTPKLEKLSL 155 (266)
T ss_dssp CSSC-----CCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred cccc-----ccccccccccccccccccccceee----cccccccccccccccccccccee----ccccccccccchhccc
Confidence 7642 223556778888888888776532 23344567888888888877631 1233445678888888
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhcCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKSFG 703 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~l~ 703 (999)
++|.++... ...+...++|++|+|++|.|+. ++..+..+++|+.|+|++|++.-+ ....+...++.+.
T Consensus 156 ~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~ 224 (266)
T d1p9ag_ 156 ANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (266)
T ss_dssp TTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred ccccccccC----ccccccccccceeecccCCCcc-----cChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence 888886433 2445667888888888888874 444555678888888888887643 2334555555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.6e-13 Score=143.02 Aligned_cols=202 Identities=19% Similarity=0.132 Sum_probs=153.5
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
..+.+++.+++.++.... .+ + ++|++|+|++|.|+......+ . ..++|++|+|++|+
T Consensus 10 ~~~~~v~C~~~~L~~iP~-~l------p--~~l~~L~Ls~N~i~~l~~~~f----~----------~l~~L~~L~L~~N~ 66 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTALPP-DL------P--KDTTILHLSENLLYTFSLATL----M----------PYTRLTQLNLDRAE 66 (266)
T ss_dssp TTCCEEECTTSCCSSCCS-CC------C--TTCCEEECTTSCCSEEEGGGG----T----------TCTTCCEEECTTSC
T ss_pred CCCeEEEccCCCCCeeCc-Cc------C--cCCCEEECcCCcCCCcCHHHh----h----------cccccccccccccc
Confidence 466778999998875431 11 1 479999999999974433222 2 23669999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
|+.-. .+..+++|++|+|++|+|+.. ...+..+++|+.|++++|.+..- ....+..+.+++.|++
T Consensus 67 l~~l~------~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~l~~L~l 131 (266)
T d1p9ag_ 67 LTKLQ------VDGTLPVLGTLDLSHNQLQSL-----PLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYL 131 (266)
T ss_dssp CCEEE------CCSCCTTCCEEECCSSCCSSC-----CCCTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEEC
T ss_pred ccccc------ccccccccccccccccccccc-----cccccccccccccccccccccee----eccccccccccccccc
Confidence 98532 234588999999999999853 34566789999999999988742 2334556789999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.++... ...+...+.|+.|++++|+|+... ...+..+++|++|+|++|+|+. |+..+..++.|+
T Consensus 132 ~~n~l~~l~----~~~~~~l~~l~~l~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~ 198 (266)
T d1p9ag_ 132 KGNELKTLP----PGLLTPTPKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLP 198 (266)
T ss_dssp TTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCS
T ss_pred cccccceec----cccccccccchhcccccccccccC----ccccccccccceeecccCCCcc-----cChhHCCCCCCC
Confidence 999987443 244556699999999999998643 3456788999999999999986 555666789999
Q ss_pred EEeCCCCCCCCCC
Q psy18075 707 ALVLEDDEGECSD 719 (999)
Q Consensus 707 ~L~Ls~N~~e~ed 719 (999)
.|++++|....+-
T Consensus 199 ~L~L~~Np~~CdC 211 (266)
T d1p9ag_ 199 FAFLHGNPWLCNC 211 (266)
T ss_dssp EEECCSCCBCCSG
T ss_pred EEEecCCCCCCCc
Confidence 9999999877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.36 E-value=4.5e-13 Score=132.60 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=121.2
Q ss_pred hhHHhhhcccCceeeccC-CCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 583 LSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 583 La~aL~~~~~Lr~LdLS~-N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
+......++.|++|+|++ +.+++.|+..++.++..+++|++|+|++|.+++.++..|+.++..+++|+.|++++|.+++
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~ 88 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 88 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence 334445679999999998 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhccCCCcCEEEc--cCCCCChhcHHHHHHHHhcCCCCCEEeCCCCC
Q psy18075 662 QGGLDLVKAMKNKTKLKQINV--SENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 714 (999)
Q Consensus 662 ~g~~~L~~~L~~~~sL~~LdL--s~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~ 714 (999)
+|+..++.++..+++|+.++| ++|.++++|...|+.++..+++|+.|+++.+.
T Consensus 89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 999999999999999997655 57899999999999999999999999997653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.2e-12 Score=139.90 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=139.0
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccC-CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~-n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
++.|++|++++|.+.......+ ..+..+..+.... +.++..... .++..++|++|++++
T Consensus 55 l~~L~~L~ls~n~l~~i~~~~~------~~~~~~~~l~~~~~~~~~~l~~~--------------~~~~l~~L~~L~l~~ 114 (284)
T d1ozna_ 55 CRNLTILWLHSNVLARIDAAAF------TGLALLEQLDLSDNAQLRSVDPA--------------TFHGLGRLHTLHLDR 114 (284)
T ss_dssp CTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSCTTCCCCCTT--------------TTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccccc------cccccccccccccccccccccch--------------hhcccccCCEEecCC
Confidence 4689999999999976654433 2235777777654 455432211 223346799999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 624 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~L 624 (999)
|.+..... ..+....+|+.+++++|.|+... ..++...++|+.|+|++|.+.. ....++..+++|+.|
T Consensus 115 n~~~~~~~----~~~~~~~~L~~l~l~~N~l~~i~----~~~f~~~~~L~~L~l~~N~l~~----l~~~~f~~l~~L~~l 182 (284)
T d1ozna_ 115 CGLQELGP----GLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISS----VPERAFRGLHSLDRL 182 (284)
T ss_dssp SCCCCCCT----TTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEE
T ss_pred cccccccc----cccchhcccchhhhccccccccC----hhHhccccchhhcccccCcccc----cchhhhccccccchh
Confidence 98764322 23455778999999999998643 2456667899999999999873 223466778899999
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh-cHHHHHHHHhc
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKS 701 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e-g~~~L~~~L~~ 701 (999)
++++|.++... +..+..+++|++|++++|.+... ....+..+++|++|+|++|++.-+ +...+...++.
T Consensus 183 ~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~i~~~----~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~ 252 (284)
T d1ozna_ 183 LLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (284)
T ss_dssp ECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred hhhhccccccC----hhHhhhhhhcccccccccccccc----cccccccccccCEEEecCCCCCCCccchHHHHHHHh
Confidence 99999987443 46677789999999999999873 345677889999999999988643 33444444543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.5e-12 Score=139.11 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=156.7
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc-CC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG-RN 545 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls-~N 545 (999)
+.+++|+|++|+|+......|. .+++|++|++++|+|.......+ .....++.+... .|
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~------~l~~L~~L~ls~n~l~~i~~~~~--------------~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAF--------------TGLALLEQLDLSDNA 91 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCCEECTTTT--------------TTCTTCCEEECCSCT
T ss_pred CCCCEEECcCCcCCCCCHHHhh------ccccccccccccccccccccccc--------------ccccccccccccccc
Confidence 4789999999999876655452 34689999999999874433222 122457777665 55
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
.+.... ...++.+++|++|++++|.+.... ...+...++|+.+++++|.|+.- ...++..+++|+.|+
T Consensus 92 ~~~~l~----~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~l~l~~N~l~~i----~~~~f~~~~~L~~L~ 159 (284)
T d1ozna_ 92 QLRSVD----PATFHGLGRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLF 159 (284)
T ss_dssp TCCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEE
T ss_pred cccccc----chhhcccccCCEEecCCccccccc----ccccchhcccchhhhcccccccc----ChhHhccccchhhcc
Confidence 565432 234667899999999999987542 23455678899999999999842 134566788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
+++|.++... ..++..+++|+.+++++|.++.. ....+..+++|++|++++|.+... ...++..++.|
T Consensus 160 l~~N~l~~l~----~~~f~~l~~L~~l~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~i~~~----~~~~~~~~~~L 227 (284)
T d1ozna_ 160 LHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRAL 227 (284)
T ss_dssp CCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTC
T ss_pred cccCcccccc----hhhhccccccchhhhhhcccccc----ChhHhhhhhhcccccccccccccc----ccccccccccc
Confidence 9999997432 35667789999999999999863 345678899999999999999874 34567889999
Q ss_pred CEEeCCCCCCCCC
Q psy18075 706 AALVLEDDEGECS 718 (999)
Q Consensus 706 ~~L~Ls~N~~e~e 718 (999)
+.|++++|.-..+
T Consensus 228 ~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 228 QYLRLNDNPWVCD 240 (284)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEecCCCCCCC
Confidence 9999999977654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.29 E-value=4.4e-12 Score=136.41 Aligned_cols=203 Identities=22% Similarity=0.263 Sum_probs=153.6
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|++|++++|.+.......| ..++.|++|++++|+|+.... .....++.|.+..|
T Consensus 54 l~~L~~L~l~~n~~~~i~~~~f------~~l~~L~~L~l~~n~l~~l~~-----------------~~~~~l~~L~~~~n 110 (305)
T d1xkua_ 54 LKNLHTLILINNKISKISPGAF------APLVKLERLYLSKNQLKELPE-----------------KMPKTLQELRVHEN 110 (305)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT------TTCTTCCEEECCSSCCSBCCS-----------------SCCTTCCEEECCSS
T ss_pred cccccccccccccccccchhhh------hCCCccCEecccCCccCcCcc-----------------chhhhhhhhhcccc
Confidence 5689999999999977654444 345799999999999863321 11245899999999
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
.+..... ..+.....+..+++..|.....+ .....+..+++|+.+++++|.+.. ++.. .+++|+.|+
T Consensus 111 ~l~~l~~----~~~~~~~~~~~l~~~~n~~~~~~--~~~~~~~~l~~L~~l~l~~n~l~~-----l~~~--~~~~L~~L~ 177 (305)
T d1xkua_ 111 EITKVRK----SVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTNITT-----IPQG--LPPSLTELH 177 (305)
T ss_dssp CCCBBCH----HHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECCSSCCCS-----CCSS--CCTTCSEEE
T ss_pred chhhhhh----hhhhccccccccccccccccccC--CCccccccccccCccccccCCccc-----cCcc--cCCccCEEE
Confidence 9886433 23445667778888888655432 233467778999999999998873 4333 257899999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 705 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L 705 (999)
+++|.+.... ...+..++.++.|++++|.+.... ...+..+++|++|+|++|.|+. ++..+..+++|
T Consensus 178 l~~n~~~~~~----~~~~~~~~~l~~L~~s~n~l~~~~----~~~~~~l~~L~~L~L~~N~L~~-----lp~~l~~l~~L 244 (305)
T d1xkua_ 178 LDGNKITKVD----AASLKGLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYI 244 (305)
T ss_dssp CTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSC
T ss_pred CCCCcCCCCC----hhHhhccccccccccccccccccc----cccccccccceeeecccccccc-----cccccccccCC
Confidence 9999987543 456778899999999999998643 2456688999999999999976 55678899999
Q ss_pred CEEeCCCCCCCC
Q psy18075 706 AALVLEDDEGEC 717 (999)
Q Consensus 706 ~~L~Ls~N~~e~ 717 (999)
+.|++++|.-..
T Consensus 245 ~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 245 QVVYLHNNNISA 256 (305)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCccCc
Confidence 999999986543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.26 E-value=2e-11 Score=126.08 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=142.5
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.+|+.|++++|.|+.. ..+ ..+++|++|+|++|.|+... . +. .+.+|+.|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l------~~l~~L~~L~ls~n~i~~~~--~----l~----------~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGV------QYLNNLIGLELKDNQITDLA--P----LK----------NLTKITELELSGNP 96 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTG------GGCTTCCEEECCSSCCCCCG--G----GT----------TCCSCCEEECCSCC
T ss_pred CCcCEEECCCCCCCcc--hhH------hcCCCCcEeecCCceeeccc--c----cc----------cccccccccccccc
Confidence 4899999999999753 223 23579999999999987422 1 22 33569999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+++-. .+..+++|+.+++++|.+... ..+...+.++.+.++++.+... ..+..+++|+.|++
T Consensus 97 ~~~i~------~l~~l~~L~~l~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l 158 (227)
T d1h6ua2 97 LKNVS------AIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSI 158 (227)
T ss_dssp CSCCG------GGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEEC
T ss_pred ccccc------ccccccccccccccccccccc------chhccccchhhhhchhhhhchh------hhhccccccccccc
Confidence 87532 366789999999999987753 2355678899999999887642 23456789999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 706 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~ 706 (999)
++|.+.+.. .+..+++|+.|+|++|++++- ..+..+++|++|+|++|+|+.- . .+..+++|+
T Consensus 159 ~~n~~~~~~------~l~~l~~L~~L~Ls~n~l~~l------~~l~~l~~L~~L~Ls~N~lt~i-----~-~l~~l~~L~ 220 (227)
T d1h6ua2 159 GNAQVSDLT------PLANLSKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISDV-----S-PLANTSNLF 220 (227)
T ss_dssp CSSCCCCCG------GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECTTSCCCBC-----G-GGTTCTTCC
T ss_pred cccccccch------hhcccccceecccCCCccCCC------hhhcCCCCCCEEECcCCcCCCC-----c-ccccCCCCC
Confidence 999987532 366789999999999999862 2367889999999999999873 2 378899999
Q ss_pred EEeCCC
Q psy18075 707 ALVLED 712 (999)
Q Consensus 707 ~L~Ls~ 712 (999)
.|++++
T Consensus 221 ~L~lsn 226 (227)
T d1h6ua2 221 IVTLTN 226 (227)
T ss_dssp EEEEEE
T ss_pred EEEeeC
Confidence 998863
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=1.8e-11 Score=124.32 Aligned_cols=124 Identities=26% Similarity=0.357 Sum_probs=65.0
Q ss_pred CccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccc
Q psy18075 536 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 615 (999)
Q Consensus 536 sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL 615 (999)
+|++|++++|++++.. .++.+++|++|++++|.+... ..+..++.|+.|++++|.+... ..+
T Consensus 63 nL~~L~Ls~N~l~~~~------~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~~~~~~~------~~~ 124 (199)
T d2omxa2 63 NLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDI------DPL 124 (199)
T ss_dssp TCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCCC------GGG
T ss_pred CcCcCccccccccCcc------cccCCcccccccccccccccc------cccccccccccccccccccccc------ccc
Confidence 3555555555555321 144455566666666555432 1244455666666665555421 123
Q ss_pred cCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 616 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 616 ~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
..+++|+.|++++|.+... ..+..+++|+.|++++|++++- ..+..+++|++|++++|+|++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~------~~l~~~~~L~~L~l~~n~l~~l------~~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 125 KNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFSSNQVTDL------KPLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp TTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC
T ss_pred chhhhhHHhhhhhhhhccc------ccccccccccccccccccccCC------ccccCCCCCCEEECCCCCCCC
Confidence 4455666666666655421 1244556666666666666541 134556666666666666654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.23 E-value=8.7e-13 Score=142.69 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=149.4
Q ss_pred CCcccEEEecC-CCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC
Q psy18075 466 GARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 544 (999)
Q Consensus 466 ~~sL~~LdLS~-N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~ 544 (999)
+++|++|+|++ |.+...-...| .++++|++|+|++|+|.......+ .. ...|+.+++++
T Consensus 75 L~~L~~L~Ls~~N~l~g~iP~~i------~~L~~L~~L~Ls~N~l~~~~~~~~----~~----------~~~L~~l~l~~ 134 (313)
T d1ogqa_ 75 LPYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVSGAIPDFL----SQ----------IKTLVTLDFSY 134 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCEEECCGGG----GG----------CTTCCEEECCS
T ss_pred Ccccccccccccccccccccccc------ccccccchhhhccccccccccccc----cc----------hhhhccccccc
Confidence 47999999996 77753222223 234799999999999864332222 22 25699999999
Q ss_pred CCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccC-ceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 545 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL-RHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 545 N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~L-r~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
|.+... ++..+..++.|+.+++++|.++.. ++..+..+..+ +.+++++|.+... ....+..+ .+..
T Consensus 135 N~~~~~----~p~~l~~l~~L~~l~l~~n~l~~~----ip~~~~~l~~l~~~l~~~~n~l~~~----~~~~~~~l-~~~~ 201 (313)
T d1ogqa_ 135 NALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANL-NLAF 201 (313)
T ss_dssp SEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGC-CCSE
T ss_pred cccccc----CchhhccCcccceeeccccccccc----ccccccccccccccccccccccccc----cccccccc-cccc
Confidence 986642 345677899999999999998753 55566666665 8899999988753 22333333 4557
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
+++..|.+... ++..+...++|+.|++++|.+... ...+..+++|+.|+|++|+++. .++..+..++
T Consensus 202 l~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~~L~ 268 (313)
T d1ogqa_ 202 VDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLK 268 (313)
T ss_dssp EECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCT
T ss_pred ccccccccccc----cccccccccccccccccccccccc-----ccccccccccccccCccCeecc----cCChHHhCCC
Confidence 99988876422 455566779999999999998753 2356778999999999999975 3677889999
Q ss_pred CCCEEeCCCCCC
Q psy18075 704 MAAALVLEDDEG 715 (999)
Q Consensus 704 ~L~~L~Ls~N~~ 715 (999)
+|+.|++++|.-
T Consensus 269 ~L~~L~Ls~N~l 280 (313)
T d1ogqa_ 269 FLHSLNVSFNNL 280 (313)
T ss_dssp TCCEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 999999999864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=1.7e-11 Score=125.59 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=100.2
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
+|++|++++|.+.... .+ ..+++|++|+|++|.|+... .+ +.+++|+.|++++|+|
T Consensus 47 ~L~~L~l~~~~i~~l~--~l------~~l~~L~~L~L~~n~i~~l~--~~--------------~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIK--PL--------------ANLKNLGWLFLDENKV 102 (210)
T ss_dssp TCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCG--GG--------------TTCTTCCEEECCSSCC
T ss_pred CccEEECcCCCCCCch--hH------hhCCCCCEEeCCCccccCcc--cc--------------ccCccccccccccccc
Confidence 6777888888775432 12 12467888888887776321 11 1234577777777777
Q ss_pred CchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcC
Q psy18075 548 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 627 (999)
Q Consensus 548 ~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs 627 (999)
++- + .+..+++|+.|++++|.+... ..+..++.|+.+++++|.+.+.. .+..+++|+.++++
T Consensus 103 ~~l-----~-~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~~~------~~~~l~~L~~l~l~ 164 (210)
T d1h6ta2 103 KDL-----S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLE 164 (210)
T ss_dssp CCG-----G-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECC
T ss_pred ccc-----c-ccccccccccccccccccccc------ccccccccccccccccccccccc------cccccccccccccc
Confidence 642 1 355567777777777776542 23555677777777777766421 23346677777777
Q ss_pred CCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccC
Q psy18075 628 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684 (999)
Q Consensus 628 ~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~ 684 (999)
+|.+++. ..+..+++|++|+|++|+|++ + ..+..+++|++|+|++
T Consensus 165 ~n~l~~i------~~l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 165 DNQISDI------VPLAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFS 209 (210)
T ss_dssp SSCCCCC------GGGTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEEEEE
T ss_pred ccccccc------ccccCCCCCCEEECCCCCCCC-----C-hhhcCCCCCCEEEccC
Confidence 7777531 125556777777777777764 2 2456677777777653
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=2.9e-11 Score=124.74 Aligned_cols=165 Identities=20% Similarity=0.267 Sum_probs=122.5
Q ss_pred CCcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCC
Q psy18075 466 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 545 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N 545 (999)
+++|+.|+|++|.|.... .+ ..+++|+.|++++|.++... .+ . .+++|+.+.++++
T Consensus 62 l~~L~~L~ls~n~i~~~~--~l------~~l~~l~~l~~~~n~~~~i~--~l----~----------~l~~L~~l~l~~~ 117 (227)
T d1h6ua2 62 LNNLIGLELKDNQITDLA--PL------KNLTKITELELSGNPLKNVS--AI----A----------GLQSIKTLDLTST 117 (227)
T ss_dssp CTTCCEEECCSSCCCCCG--GG------TTCCSCCEEECCSCCCSCCG--GG----T----------TCTTCCEEECTTS
T ss_pred CCCCcEeecCCceeeccc--cc------cccccccccccccccccccc--cc----c----------ccccccccccccc
Confidence 468999999999986543 12 34578999999999876432 12 1 2356999999988
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 625 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~Ld 625 (999)
...+. ..+...+.+..+.++++.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|+
T Consensus 118 ~~~~~------~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~ 179 (227)
T d1h6ua2 118 QITDV------TPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLK 179 (227)
T ss_dssp CCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEE
T ss_pred ccccc------chhccccchhhhhchhhhhchh------hhhccccccccccccccccccc------hhhcccccceecc
Confidence 87642 1245577888899999888753 2355678999999999988742 2356788999999
Q ss_pred cCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccC
Q psy18075 626 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 684 (999)
Q Consensus 626 Ls~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~ 684 (999)
|++|.+++- ..+..+++|++|+|++|+|++- . .+.++++|+.|+|++
T Consensus 180 Ls~n~l~~l------~~l~~l~~L~~L~Ls~N~lt~i-----~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 180 ADDNKISDI------SPLASLPNLIEVHLKNNQISDV-----S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCSSCCCCC------GGGGGCTTCCEEECTTSCCCBC-----G-GGTTCTTCCEEEEEE
T ss_pred cCCCccCCC------hhhcCCCCCCEEECcCCcCCCC-----c-ccccCCCCCEEEeeC
Confidence 999998742 2366779999999999999863 2 477899999999873
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.22 E-value=3.7e-11 Score=121.86 Aligned_cols=160 Identities=25% Similarity=0.333 Sum_probs=124.9
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCC
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 546 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~ 546 (999)
.+|++|++++|.|.... .+ ..+++|++|+|++|+|+... . +. .+++|+.|++++|.
T Consensus 40 ~~l~~L~l~~~~i~~l~--~l------~~l~nL~~L~Ls~N~l~~~~--~----l~----------~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID--GV------EYLNNLTQINFSNNQLTDIT--P----LK----------NLTKLVDILMNNNQ 95 (199)
T ss_dssp TTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCG--G----GT----------TCTTCCEEECCSSC
T ss_pred cCCCEEECCCCCCCCcc--cc------ccCCCcCcCccccccccCcc--c----cc----------CCcccccccccccc
Confidence 58999999999997642 22 23579999999999987432 1 22 33669999999999
Q ss_pred CCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 547 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 547 L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+.... .+..++.|+.|++++|.+... ..+..+++|+.|++++|.+.. + ..+..+++|+.|++
T Consensus 96 ~~~~~------~l~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~n~l~~-----~-~~l~~~~~L~~L~l 157 (199)
T d2omxa2 96 IADIT------PLANLTNLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD-----I-SALSGLTSLQQLNF 157 (199)
T ss_dssp CCCCG------GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCC-----C-GGGTTCTTCSEEEC
T ss_pred ccccc------ccccccccccccccccccccc------cccchhhhhHHhhhhhhhhcc-----c-cccccccccccccc
Confidence 87532 367789999999999998753 246678999999999999873 2 34678999999999
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEE
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 680 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~L 680 (999)
.+|.+++- ..+.++++|++|++++|+|++- ..+..+++|+.|
T Consensus 158 ~~n~l~~l------~~l~~l~~L~~L~ls~N~i~~i------~~l~~L~~L~~L 199 (199)
T d2omxa2 158 SSNQVTDL------KPLANLTTLERLDISSNKVSDI------SVLAKLTNLESL 199 (199)
T ss_dssp CSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred ccccccCC------ccccCCCCCCEEECCCCCCCCC------ccccCCCCCCcC
Confidence 99999753 2467889999999999999862 246678888876
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.21 E-value=3.9e-11 Score=122.81 Aligned_cols=164 Identities=22% Similarity=0.318 Sum_probs=130.1
Q ss_pred CCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccC
Q psy18075 497 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 576 (999)
Q Consensus 497 ~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It 576 (999)
.+|++|++++|.++.... +.. +++|++|++++|+|++-. .+..+++|+.|++++|+|+
T Consensus 46 ~~L~~L~l~~~~i~~l~~------l~~----------l~~L~~L~L~~n~i~~l~------~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQG------IQY----------LPNVTKLFLNGNKLTDIK------PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTCCEEECTTSCCCCCTT------GGG----------CTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCC
T ss_pred cCccEEECcCCCCCCchh------Hhh----------CCCCCEEeCCCccccCcc------ccccCcccccccccccccc
Confidence 479999999999874321 222 256999999999998632 2566899999999999998
Q ss_pred chhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccC
Q psy18075 577 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 656 (999)
Q Consensus 577 ~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~ 656 (999)
+. . .+..+++|+.|++++|.+.. + ..+..++.|+.+++++|.+++.. .+..+++|+.+++++
T Consensus 104 ~l-----~-~l~~l~~L~~L~l~~~~~~~-----~-~~l~~l~~l~~l~~~~n~l~~~~------~~~~l~~L~~l~l~~ 165 (210)
T d1h6ta2 104 DL-----S-SLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLED 165 (210)
T ss_dssp CG-----G-GGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCS
T ss_pred cc-----c-cccccccccccccccccccc-----c-ccccccccccccccccccccccc------ccccccccccccccc
Confidence 53 2 46778999999999998863 2 24667889999999999997532 245579999999999
Q ss_pred CCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCC
Q psy18075 657 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 712 (999)
Q Consensus 657 N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~ 712 (999)
|++.+- ..+..+++|+.|+|++|+|++ + ..+..+++|++|++++
T Consensus 166 n~l~~i------~~l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 166 NQISDI------VPLAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFS 209 (210)
T ss_dssp SCCCCC------GGGTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEEEEE
T ss_pred cccccc------ccccCCCCCCEEECCCCCCCC-----C-hhhcCCCCCCEEEccC
Confidence 999862 236789999999999999986 3 3578899999999864
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.6e-10 Score=114.03 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=45.3
Q ss_pred cccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 590 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 590 ~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
+++|+.|+|++|.|.. + ..+..+++|++|++++|.++.... ..+..+++|++|++++|+|++-+. ..
T Consensus 40 l~~L~~L~Ls~N~i~~-----l-~~~~~l~~L~~L~ls~N~i~~l~~----~~~~~l~~L~~L~L~~N~i~~~~~---l~ 106 (162)
T d1a9na_ 40 LDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGD---LD 106 (162)
T ss_dssp TTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECS----CHHHHCTTCCEEECCSCCCCCGGG---GG
T ss_pred cccCCEEECCCCCCCc-----c-CCcccCcchhhhhcccccccCCCc----cccccccccccceecccccccccc---cc
Confidence 4445555555555442 2 223444455555555555543221 011223455555555555543211 12
Q ss_pred hhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEe
Q psy18075 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV 709 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~ 709 (999)
.+..+++|++|++++|+++.... .-...+..+++|+.||
T Consensus 107 ~l~~l~~L~~L~l~~N~i~~~~~-~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 107 PLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLD 145 (162)
T ss_dssp GGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEET
T ss_pred ccccccccchhhcCCCccccccc-hHHHHHHHCCCcCeeC
Confidence 33445555555555555433211 1112344455555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=6.2e-10 Score=109.64 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=103.7
Q ss_pred CCCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 533 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 533 ~~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
.+..+++|+|++|+|+.- ...+..+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.+.. +.
T Consensus 16 n~~~lr~L~L~~n~I~~i-----~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~-----l~ 79 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-----IG 79 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-----EC
T ss_pred CcCcCcEEECCCCCCCcc-----CccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccC-----CC
Confidence 456799999999999853 22345578999999999999863 246778999999999999984 33
Q ss_pred cc-ccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh
Q psy18075 613 QA-LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 690 (999)
Q Consensus 613 ~a-L~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e 690 (999)
.. +..+++|+.|++++|.|++-+. + ..+..+++|++|++++|+++.... .-...+..+|+|++|| +..|+.+
T Consensus 80 ~~~~~~l~~L~~L~L~~N~i~~~~~--l-~~l~~l~~L~~L~l~~N~i~~~~~-~r~~~i~~lp~L~~LD--~~~i~~~ 152 (162)
T d1a9na_ 80 EGLDQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLD--FQKVKLK 152 (162)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEET--TEECCHH
T ss_pred ccccccccccccceecccccccccc--c-cccccccccchhhcCCCccccccc-hHHHHHHHCCCcCeeC--CCCCCHH
Confidence 32 3468899999999999985432 2 346778999999999999976432 1223567789999987 6677764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=6.8e-10 Score=104.52 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=42.5
Q ss_pred hhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhh
Q psy18075 587 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 666 (999)
Q Consensus 587 L~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~ 666 (999)
+..+++|++|++++|.|+ .++..+..+++|+.|++++|.|++- ..+..+++|++|++++|+|+.-..
T Consensus 16 l~~l~~L~~L~ls~N~l~-----~lp~~~~~l~~L~~L~l~~N~i~~l------~~~~~l~~L~~L~l~~N~i~~~~~-- 82 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENV------DGVANLPRLQELLLCNNRLQQSAA-- 82 (124)
T ss_dssp GGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCC------GGGTTCSSCCEEECCSSCCCSSST--
T ss_pred cccCCCCCEEECCCCccC-----cchhhhhhhhccccccccccccccc------CccccccccCeEECCCCccCCCCC--
Confidence 334455555555555554 2333444455555555555555421 123444555555555555553211
Q ss_pred HHHhhccCCCcCEEEccCCCCC
Q psy18075 667 LVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 667 L~~~L~~~~sL~~LdLs~N~Is 688 (999)
...+..+++|+.|++++|+++
T Consensus 83 -~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 83 -IQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp -TGGGGGCTTCCEEECTTSGGG
T ss_pred -chhhcCCCCCCEEECCCCcCC
Confidence 123344555555555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.1e-09 Score=102.91 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=93.1
Q ss_pred cEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccC
Q psy18075 538 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 617 (999)
Q Consensus 538 k~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~ 617 (999)
|.|+|++|+|+.- + .+..+++|++|++++|.|+. ++..+..+++|+.|++++|.|+. +. .+..
T Consensus 1 R~L~Ls~n~l~~l-----~-~l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~-----l~-~~~~ 63 (124)
T d1dcea3 1 RVLHLAHKDLTVL-----C-HLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GVAN 63 (124)
T ss_dssp SEEECTTSCCSSC-----C-CGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GGTT
T ss_pred CEEEcCCCCCCCC-----c-ccccCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccc-----cC-cccc
Confidence 6899999999843 2 36778999999999999985 55667889999999999999984 32 4778
Q ss_pred CCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEE
Q psy18075 618 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 680 (999)
Q Consensus 618 l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~L 680 (999)
+++|+.|++++|.|++... ...+..+++|+.|++++|+|..... .........|+|+.|
T Consensus 64 l~~L~~L~l~~N~i~~~~~---~~~l~~~~~L~~L~l~~N~i~~~~~-~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 64 LPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSI 122 (124)
T ss_dssp CSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEE
T ss_pred ccccCeEECCCCccCCCCC---chhhcCCCCCCEEECCCCcCCcCcc-HHHHHHHHCcCcceE
Confidence 9999999999999985432 1346678999999999999875321 112223345666655
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.81 E-value=1.7e-09 Score=108.68 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=70.3
Q ss_pred CCCccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccc
Q psy18075 534 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 613 (999)
Q Consensus 534 ~~sLk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~ 613 (999)
+.++++|+|++|+|+..-. ...|..+++|++|+|++|.|... ....+...++|+.|+|++|.|.. .-+.
T Consensus 28 p~~l~~L~Ls~N~i~~~~~---~~~f~~l~~L~~L~L~~N~i~~~----~~~~~~~~~~L~~L~Ls~N~l~~----l~~~ 96 (192)
T d1w8aa_ 28 PLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKE----ISNK 96 (192)
T ss_dssp CTTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCE----ECSS
T ss_pred CCCCCEEEeCCCCCccccc---ccccCCCceEeeeeccccccccc----cccccccccccceeeeccccccc----cCHH
Confidence 4567777777777753110 12345567777777777777643 23455556777777777777763 1233
Q ss_pred cccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 614 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 614 aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
++..+++|++|+|++|.|+... ..+|...++|++|+|++|.+..
T Consensus 97 ~F~~l~~L~~L~L~~N~l~~i~----~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 97 MFLGLHQLKTLNLYDNQISCVM----PGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECTTCCBCC
T ss_pred HHhCCCcccccccCCccccccC----HHHhcCCccccccccccccccc
Confidence 4566777777777777776322 2345556777777777777654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.77 E-value=3.9e-10 Score=114.67 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=105.9
Q ss_pred CCccEEEccCC--CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccc
Q psy18075 535 LALKVFIAGRN--RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 612 (999)
Q Consensus 535 ~sLk~L~Ls~N--~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~ 612 (999)
..++.+.+.++ .+. .+...+..+++|++|+|++|+|+.. ..|..+++|+.|+|++|.|+. +.
T Consensus 23 ~~~~~~~l~~~~~~i~-----~l~~sl~~L~~L~~L~Ls~n~I~~i------~~l~~l~~L~~L~Ls~N~i~~-----i~ 86 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIE-----KMDATLSTLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKK-----IE 86 (198)
T ss_dssp TTCSCEECCBCCTTCC-----CCHHHHHHTTTCCEEECSEEEESCC------CCHHHHTTCCEEECCEEEECS-----CS
T ss_pred cccceeeeecccCchh-----hhhhHHhcccccceeECcccCCCCc------ccccCCccccChhhccccccc-----cc
Confidence 44666666654 233 2445677788999999999998853 246678899999999998874 22
Q ss_pred ccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhc-
Q psy18075 613 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG- 691 (999)
Q Consensus 613 ~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg- 691 (999)
.....+++|+.|++++|.++. . ..+..+++|+.|+|++|+|++-+. ...+..+++|+.|+|++|++....
T Consensus 87 ~~~~~~~~L~~L~l~~N~i~~--l----~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~~~~ 157 (198)
T d1m9la_ 87 NLDAVADTLEELWISYNQIAS--L----SGIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SHHHHHHHCCEEECSEEECCC--H----HHHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred ccccccccccccccccccccc--c----ccccccccccccccccchhccccc---cccccCCCccceeecCCCccccCcc
Confidence 222234579999999999874 2 234456889999999999986321 246788999999999999875421
Q ss_pred -----HHHHHHHHhcCCCCCEEeC
Q psy18075 692 -----VEEMEKLMKSFGMAAALVL 710 (999)
Q Consensus 692 -----~~~L~~~L~~l~~L~~L~L 710 (999)
.......+..+++|+.||.
T Consensus 158 ~~~~~~~~r~~vi~~lp~L~~LD~ 181 (198)
T d1m9la_ 158 ENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp TTTTHHHHHHHHHHHCSSCCEESS
T ss_pred cccchhhHHHHHHHHCCCcCEeCC
Confidence 1223345778899999864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.69 E-value=8.4e-08 Score=102.63 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCC
Q psy18075 647 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 716 (999)
Q Consensus 647 ~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e 716 (999)
++|++|+|++|+|..- + ...++|+.|+|++|+|+.- + ...++|+.|++++|.-.
T Consensus 284 ~~L~~L~Ls~N~l~~l-----p---~~~~~L~~L~L~~N~L~~l-----~---~~~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 284 PSLEELNVSNNKLIEL-----P---ALPPRLERLIASFNHLAEV-----P---ELPQNLKQLHVEYNPLR 337 (353)
T ss_dssp TTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCccCcc-----c---cccCCCCEEECCCCcCCcc-----c---cccCCCCEEECcCCcCC
Confidence 6789999999988752 2 2357889999999988762 2 23467888999887643
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=2.1e-08 Score=100.45 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=97.8
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
.+.++.++++++. ++..+ .+++++|+|++|.|+..- -...|..+++|+.|+|++|.+.. .....+.
T Consensus 10 ~~~v~Cs~~~L~~-----iP~~l--p~~l~~L~Ls~N~i~~~~---~~~~f~~l~~L~~L~L~~N~i~~----~~~~~~~ 75 (192)
T d1w8aa_ 10 GTTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTG----IEPNAFE 75 (192)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCC----BCTTTTT
T ss_pred CCEEEEeCCCcCc-----cCCCC--CCCCCEEEeCCCCCcccc---cccccCCCceEeeeecccccccc----ccccccc
Confidence 5678888887763 23222 358899999999997421 12355678899999999998874 3445667
Q ss_pred CCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCCh
Q psy18075 617 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 689 (999)
Q Consensus 617 ~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~ 689 (999)
.+++|+.|+|++|.|+... +.+|.+.++|++|+|++|.|+.- -..++...++|++|+|++|.+..
T Consensus 76 ~~~~L~~L~Ls~N~l~~l~----~~~F~~l~~L~~L~L~~N~l~~i----~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 76 GASHIQELQLGENKIKEIS----NKMFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCTTCCEEECCSCCCCEEC----SSSSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBCC
T ss_pred cccccceeeeccccccccC----HHHHhCCCcccccccCCcccccc----CHHHhcCCccccccccccccccc
Confidence 7889999999999987433 34577789999999999999862 23456778899999999998864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.55 E-value=4.1e-09 Score=106.96 Aligned_cols=80 Identities=29% Similarity=0.301 Sum_probs=36.8
Q ss_pred ccEEEccCCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCccccccccc
Q psy18075 537 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 616 (999)
Q Consensus 537 Lk~L~Ls~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~ 616 (999)
|+.|+|++|+|+.- ......+++|++|++++|.|+.. ..+..+++|+.|+|++|.|++-+ . ...+.
T Consensus 72 L~~L~Ls~N~i~~i-----~~~~~~~~~L~~L~l~~N~i~~l------~~~~~l~~L~~L~L~~N~i~~~~--~-~~~l~ 137 (198)
T d1m9la_ 72 LRILSLGRNLIKKI-----ENLDAVADTLEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWG--E-IDKLA 137 (198)
T ss_dssp CCEEECCEEEECSC-----SSHHHHHHHCCEEECSEEECCCH------HHHHHHHHSSEEEESEEECCCHH--H-HHHHT
T ss_pred ccChhhcccccccc-----ccccccccccccccccccccccc------ccccccccccccccccchhcccc--c-ccccc
Confidence 66666666655431 11112233555666666655531 22444555666666655554210 0 01233
Q ss_pred CCCCCcEEEcCCCC
Q psy18075 617 KLPSLAILNLGDCL 630 (999)
Q Consensus 617 ~l~sL~~LdLs~N~ 630 (999)
.+++|+.|+|++|.
T Consensus 138 ~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 138 ALDKLEDLLLAGNP 151 (198)
T ss_dssp TTTTCSEEEECSSH
T ss_pred CCCccceeecCCCc
Confidence 44445555554443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=9.4e-09 Score=105.93 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCcccEEEecCCCCCCc-cHHHHHHHHhccCCCCccEEEccC-CccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEcc
Q psy18075 466 GARLVELDLSDNAFGPI-GVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 543 (999)
Q Consensus 466 ~~sL~~LdLS~N~L~~~-gv~~L~~~L~s~~c~~L~~L~Ls~-n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls 543 (999)
+++|++|+|++|.+... ....+ ..++.+++|.+.. |++.......+ ...++|++|+++
T Consensus 52 l~~L~~L~ls~n~~~~~i~~~~f------~~l~~l~~l~~~~~n~l~~~~~~~~--------------~~l~~L~~l~l~ 111 (242)
T d1xwdc1 52 FGDLEKIEISQNDVLEVIEADVF------SNLPKLHEIRIEKANNLLYINPEAF--------------QNLPNLQYLLIS 111 (242)
T ss_dssp CTTCCEEEEESCTTCCEECSSSE------ESCTTCCEEEEECCTTCCEECTTSE--------------ECCTTCCEEEEE
T ss_pred cchhhhhhhccccccceeecccc------ccccccccccccccccccccccccc--------------cccccccccccc
Confidence 45777777777776432 21112 2245667776654 34432221111 123457777777
Q ss_pred CCCCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhc-ccCceeeccCCCCCcCCcccccccccCCCCCc
Q psy18075 544 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 622 (999)
Q Consensus 544 ~N~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~-~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~ 622 (999)
+|++...... ..+...+.+..+...++.++..... .+..+ ..++.|++++|.++. +...+....++.
T Consensus 112 ~~~l~~~~~~---~~~~~l~~l~~~~~~n~~l~~i~~~----~~~~~~~~l~~L~l~~n~l~~-----i~~~~~~~~~l~ 179 (242)
T d1xwdc1 112 NTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNKNGIQE-----IHNCAFNGTQLD 179 (242)
T ss_dssp SCCCCSCCCC---TTTCBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCSSCCCE-----ECTTTTTTCCEE
T ss_pred hhhhcccccc---ccccccccccccccccccccccccc----ccccccccceeeecccccccc-----cccccccchhhh
Confidence 7766532211 1122233444444455555543211 12222 356667777766652 333333344444
Q ss_pred EE-EcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCC
Q psy18075 623 IL-NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 661 (999)
Q Consensus 623 ~L-dLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~ 661 (999)
.+ .+++|.++.-. ..++.++++|+.|+|++|+|+.
T Consensus 180 ~~~~l~~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~ 215 (242)
T d1xwdc1 180 ELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHS 215 (242)
T ss_dssp EEECTTCTTCCCCC----TTTTTTSCCCSEEECTTSCCCC
T ss_pred cccccccccccccc----HHHhcCCCCCCEEECCCCcCCc
Confidence 44 34555555322 1234556677777777776664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.7e-08 Score=103.93 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=127.1
Q ss_pred CcccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccC-C
Q psy18075 467 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR-N 545 (999)
Q Consensus 467 ~sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~-N 545 (999)
++++.|+|++|.|+......| ..+++|++|+|++|.+..... .. .+.....++++.+.+ |
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f------~~l~~L~~L~ls~n~~~~~i~---~~----------~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAF------SGFGDLEKIEISQNDVLEVIE---AD----------VFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTT------TTCTTCCEEEEESCTTCCEEC---SS----------SEESCTTCCEEEEECCT
T ss_pred CCCCEEECcCCcCCccChhHh------hccchhhhhhhccccccceee---cc----------ccccccccccccccccc
Confidence 479999999999976554444 235799999999998753110 00 111235588888764 5
Q ss_pred CCCchhHHHHHHHHhhcccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCC-CCCcEE
Q psy18075 546 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAIL 624 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l-~sL~~L 624 (999)
++..... ..|..+++|++|++++|+++..... ..+.....+..+..+++.+..-. ...+..+ ..+..|
T Consensus 90 ~l~~~~~----~~~~~l~~L~~l~l~~~~l~~~~~~---~~~~~l~~l~~~~~~n~~l~~i~----~~~~~~~~~~l~~L 158 (242)
T d1xwdc1 90 NLLYINP----EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIE----RNSFVGLSFESVIL 158 (242)
T ss_dssp TCCEECT----TSEECCTTCCEEEEESCCCCSCCCC---TTTCBSSCEEEEEESCTTCCEEC----TTSSTTSBSSCEEE
T ss_pred ccccccc----ccccccccccccccchhhhcccccc---ccccccccccccccccccccccc----ccccccccccceee
Confidence 6654332 3456688999999999998754211 12233445555566666665311 1223333 378899
Q ss_pred EcCCCCCCccchHHHHHhccCCCCCCEE-EccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChhcHHHHHHHHhcCC
Q psy18075 625 NLGDCLLKSAGASSIAKYLTDNTTLEDV-NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 703 (999)
Q Consensus 625 dLs~N~L~d~g~~~La~aL~~~~~L~~L-dLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~ 703 (999)
++++|.++... ..+....++..+ ++++|+|+.-. ...+..+++|++|+|++|.|+.-. ...+..++
T Consensus 159 ~l~~n~l~~i~-----~~~~~~~~l~~~~~l~~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~ 225 (242)
T d1xwdc1 159 WLNKNGIQEIH-----NCAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHSLP----SYGLENLK 225 (242)
T ss_dssp ECCSSCCCEEC-----TTTTTTCCEEEEECTTCTTCCCCC----TTTTTTSCCCSEEECTTSCCCCCC----SSSCTTCC
T ss_pred ecccccccccc-----cccccchhhhcccccccccccccc----HHHhcCCCCCCEEECCCCcCCccC----HHHHcCCc
Confidence 99999987433 222344666555 56788887532 234678899999999999998632 12355666
Q ss_pred CCCEEeCC
Q psy18075 704 MAAALVLE 711 (999)
Q Consensus 704 ~L~~L~Ls 711 (999)
.|+.+++.
T Consensus 226 ~L~~l~~~ 233 (242)
T d1xwdc1 226 KLRARSTY 233 (242)
T ss_dssp EEESSSEE
T ss_pred ccccCcCC
Confidence 66655543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=7.4e-07 Score=86.92 Aligned_cols=87 Identities=26% Similarity=0.307 Sum_probs=38.3
Q ss_pred hcccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCc---chh
Q psy18075 589 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ---GGL 665 (999)
Q Consensus 589 ~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~---g~~ 665 (999)
.+++|+.|+|++|.|++ +..+...+..+++|+.|+|++|.|++-.. +.. + ....|+.|++++|+|... ...
T Consensus 63 ~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~--l~~-l-~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 63 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERE--LDK-I-KGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGG--HHH-H-TTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchh--hhh-h-hccccceeecCCCCcCcCcccchh
Confidence 44555555555555543 11222233344455555555555543221 111 1 123455555565555432 112
Q ss_pred hHHHhhccCCCcCEEE
Q psy18075 666 DLVKAMKNKTKLKQIN 681 (999)
Q Consensus 666 ~L~~~L~~~~sL~~Ld 681 (999)
.....+..+|+|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 2333444555555553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.08 E-value=1.5e-05 Score=84.57 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=88.3
Q ss_pred cccEEEecCCCCCCccHHHHHHHHhccCCCCccEEEccCCccCchhhhHHHHHHhhhccCCcCCCCCCCccEEEccCCCC
Q psy18075 468 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 547 (999)
Q Consensus 468 sL~~LdLS~N~L~~~gv~~L~~~L~s~~c~~L~~L~Ls~n~Lt~~g~~~La~~L~~~~~~s~~~g~~~sLk~L~Ls~N~L 547 (999)
++++|||++|.++... +. .++|++|+|++|+|+... . .+.+|+.|++++|++
T Consensus 39 ~l~~LdLs~~~L~~lp-----~~-----~~~L~~L~Ls~N~l~~lp-----~-------------~~~~L~~L~l~~n~l 90 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLP-----EL-----PPHLESLVASCNSLTELP-----E-------------LPQSLKSLLVDNNNL 90 (353)
T ss_dssp TCSEEECTTSCCSCCC-----SC-----CTTCSEEECCSSCCSSCC-----C-------------CCTTCCEEECCSSCC
T ss_pred CCCEEEeCCCCCCCCC-----CC-----CCCCCEEECCCCCCcccc-----c-------------chhhhhhhhhhhccc
Confidence 6889999999987543 11 258999999999886321 1 124599999999988
Q ss_pred CchhHHHHHHHHhh-cccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcEEEc
Q psy18075 548 ENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 626 (999)
Q Consensus 548 ~d~g~~~L~~~L~~-~~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdL 626 (999)
+.- .. .+.|++|++++|.|+.. + .+..+++|+.|++++|.+... .. ....+..+.+
T Consensus 91 ~~l---------~~lp~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~~~~~~~-----~~---~~~~l~~l~~ 147 (353)
T d1jl5a_ 91 KAL---------SDLPPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKKL-----PD---LPPSLEFIAA 147 (353)
T ss_dssp SCC---------CSCCTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSCC-----CC---CCTTCCEEEC
T ss_pred chh---------hhhccccccccccccccccc-----c-chhhhccceeecccccccccc-----cc---ccccccchhh
Confidence 732 12 24689999999988753 2 245678899999998877631 11 1335566666
Q ss_pred CCCCCCccchHHHHHhccCCCCCCEEEccCCCCC
Q psy18075 627 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 660 (999)
Q Consensus 627 s~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~ 660 (999)
..+..... ..+..++.++.|++++|.+.
T Consensus 148 ~~~~~~~~------~~l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 148 GNNQLEEL------PELQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp CSSCCSSC------CCCTTCTTCCEEECCSSCCS
T ss_pred cccccccc------ccccccccceeccccccccc
Confidence 65554321 12334566667777766554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3.4e-06 Score=81.64 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred ccccccCCCccCchhhhhhhHHhhhcccCceeeccCC-CCCcCCccccc-ccccCCCCCcEEEcCCCCCCccchHHHHHh
Q psy18075 565 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLG-QALSKLPSLAILNLGDCLLKSAGASSIAKY 642 (999)
Q Consensus 565 Le~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N-~Lsd~G~~~L~-~aL~~l~sL~~LdLs~N~L~d~g~~~La~a 642 (999)
.+.++.+++++++ ++..+...++|+.|+|++| .|+. +. .+|..+++|+.|+|++|+|+... +.+
T Consensus 10 ~~~l~c~~~~~~~-----~p~~l~~l~~l~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~ 75 (156)
T d2ifga3 10 SSGLRCTRDGALD-----SLHHLPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVKSGLRFVA----PDA 75 (156)
T ss_dssp SSCEECCSSCCCT-----TTTTSCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCSSCCCEEC----TTG
T ss_pred CCeEEecCCCCcc-----CcccccCccccCeeecCCCccccc-----cCchhhccccccCcceeeccccCCcc----ccc
Confidence 4445555555543 2344555667777777654 3652 22 34566777777777777776432 345
Q ss_pred ccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCC
Q psy18075 643 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 688 (999)
Q Consensus 643 L~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is 688 (999)
+..+++|+.|+|++|+|+.- ...+-...+|+.|+|++|++.
T Consensus 76 f~~l~~L~~L~Ls~N~l~~l-----~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 76 FHFTPRLSRLNLSFNALESL-----SWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp GGSCSCCCEEECCSSCCSCC-----CSTTTCSCCCCEEECCSSCCC
T ss_pred ccccccccceeccCCCCccc-----ChhhhccccccccccCCCccc
Confidence 66677788888888877642 222223446888888888875
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=6.7e-07 Score=87.26 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=91.1
Q ss_pred CCCchhHHHHHHHHhhc--ccccccccCCCccCchhhhhhhHHhhhcccCceeeccCCCCCcCCcccccccccCCCCCcE
Q psy18075 546 RLENEGAKMLAAVFKKL--KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 623 (999)
Q Consensus 546 ~L~d~g~~~L~~~L~~~--~sLe~LdLs~N~It~~g~~~La~aL~~~~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~ 623 (999)
++....+..+...+... ...+.|+++++.... .+.....+..|++..+.+. .+......+++|++
T Consensus 3 ~l~~~~ie~l~~~l~~~~~~~~~~Ldls~l~~~~--------~l~~~~~~~~l~~~~~~~~-----~l~~~~~~~~~L~~ 69 (162)
T d1koha1 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP--------DLVAQNIDVVLNRRSSMAA-----TLRIIEENIPELLS 69 (162)
T ss_dssp SCCHHHHHHHHHHHHTTBCSSSCCBCCCCCSSCT--------TTTTTTCCCCTTSHHHHHH-----HHHHHHHHCTTCCC
T ss_pred CCCHHHHHHHHHHHHhhcchhhCeeecccCCCCc--------hhhhccchhhcchhhhHhh-----hhHHHHHhCCCCCE
Confidence 34444455555544442 345566766654321 1222233334443333222 22223346889999
Q ss_pred EEcCCCCCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHHhhccCCCcCEEEccCCCCChh---cHHHHHHHHh
Q psy18075 624 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE---GVEEMEKLMK 700 (999)
Q Consensus 624 LdLs~N~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~~L~~~~sL~~LdLs~N~Is~e---g~~~L~~~L~ 700 (999)
|+|++|+|++-. .+...+..+++|+.|+|++|.|++-.. + ..+ ....|+.|++++|++... ........++
T Consensus 70 L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~l~~--l-~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 70 LNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSERE--L-DKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCCGGG--H-HHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred eeCCCccccCCc--hhHHHHhhCCcccccccccCccccchh--h-hhh-hccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 999999998643 244555667999999999999997432 2 223 345799999999999753 3456677888
Q ss_pred cCCCCCEEe
Q psy18075 701 SFGMAAALV 709 (999)
Q Consensus 701 ~l~~L~~L~ 709 (999)
.+|+|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 999999985
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.6e-05 Score=76.71 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=83.8
Q ss_pred ccCceeeccCCCCCcCCcccccccccCCCCCcEEEcCCC-CCCccchHHHHHhccCCCCCCEEEccCCCCCCcchhhHHH
Q psy18075 591 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 669 (999)
Q Consensus 591 ~~Lr~LdLS~N~Lsd~G~~~L~~aL~~l~sL~~LdLs~N-~L~d~g~~~La~aL~~~~~L~~LdLs~N~I~~~g~~~L~~ 669 (999)
.....++.+++.+. ..+..+..+++|++|++.+| .|+... ..+|...++|+.|+|++|+|+.-. ..
T Consensus 8 ~~~~~l~c~~~~~~-----~~p~~l~~l~~l~~L~l~~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~----~~ 74 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-----DSLHHLPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVA----PD 74 (156)
T ss_dssp SSSSCEECCSSCCC-----TTTTTSCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEEC----TT
T ss_pred CCCCeEEecCCCCc-----cCcccccCccccCeeecCCCccccccC----chhhccccccCcceeeccccCCcc----cc
Confidence 34566777777666 35666778889999999876 477543 256778899999999999998632 35
Q ss_pred hhccCCCcCEEEccCCCCChhcHHHHHHHHhcCCCCCEEeCCCCCCCCCC
Q psy18075 670 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 719 (999)
Q Consensus 670 ~L~~~~sL~~LdLs~N~Is~eg~~~L~~~L~~l~~L~~L~Ls~N~~e~ed 719 (999)
++..+++|++|+|++|+|+. +...+-....|+.|++++|....+-
T Consensus 75 ~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~~l~~L~L~~Np~~C~C 119 (156)
T d2ifga3 75 AFHFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHCSC 119 (156)
T ss_dssp GGGSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred cccccccccceeccCCCCcc-----cChhhhccccccccccCCCcccCCc
Confidence 67889999999999999986 3333334457999999999876544
|