Psyllid ID: psy18088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MLTAHAPAISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFPFA
Secondary Structure (PSIPRED)
cccccccccccccccEEEHHHHHHHHccccEEEEEEccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHccccEEEEEEEccccccccccccccEEEccHHHHHHHHHccccEEEEEEccccccccHHHHHccccEEEEEcHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHccccHHHHccccccEEEEEEccccccccccccccccccccccccccEEEEEccccccHHHHHHHHcccccEEEcccEEcccccccccEcccEEEccHHHHHHHHHcccEEEEEEEccEEEEEEHHHHHccccEEEEcHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mltahapaishqccQMTVTKQSYIRENAGITVRILLNYRtcisasgnpdsgirsgRIHFFACILHVDFAMFGKTSFLFLRTVLDrfgfsvshttrgprpgevdgkayHFVTRADMEERIAAGEFLEHAEFAANlygtsqcgrqngrnyLIFNTLaakclptvfpfa
Flexible Loop (DISEMBL)
mltahapaishqccqMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSvshttrgprpgevdgKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLaakclptvfpfa
Low Complexity Region (SEG)
MLTAHAPAISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFPFA
Disordered region (IsUnstruct)
********ISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTR*****EVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFP**
Disordered Region (DISOPRED)
******PAISHQCCQMTVTKQSYIRENAGITVRIL************************FACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFP**
Disordered Region (DISEMBL)
MLTAHAPAISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFPFA
Disordered Region (DISPRO)
*****APAISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTAHAPAISHQCCQMTVTKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNTLAAKCLPTVFPFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q64520	198	Guanylate kinase OS=Mus m	yes	N/A	0.325	0.272	0.740	6e-18
Q16774	197	Guanylate kinase OS=Homo	yes	N/A	0.433	0.365	0.594	9e-18
P31006	198	Guanylate kinase OS=Sus s	yes	N/A	0.415	0.348	0.605	1e-17
P46195	198	Guanylate kinase OS=Bos t	yes	N/A	0.331	0.277	0.709	2e-17
Q8Z0I7	199	Guanylate kinase OS=Nosto	yes	N/A	0.728	0.608	0.392	3e-15
Q3MD38	199	Guanylate kinase OS=Anaba	yes	N/A	0.554	0.462	0.415	2e-14
Q2YD10	210	Guanylate kinase OS=Nitro	yes	N/A	0.566	0.447	0.421	3e-14
Q3SLI4	209	Guanylate kinase OS=Thiob	yes	N/A	0.379	0.301	0.567	1e-13
Q9P6I5	202	Guanylate kinase OS=Schiz	yes	N/A	0.403	0.331	0.507	5e-13
Q5RDQ2	675	MAGUK p55 subfamily membe	no	N/A	0.331	0.081	0.6	9e-13

>sp|Q64520|KGUA_MOUSE Guanylate kinase OS=Mus musculus GN=Guk1 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+
Sbjct: 32  FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 85

Essential for recycling GMP and indirectly, cGMP.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 8

>sp|Q16774|KGUA_HUMAN Guanylate kinase OS=Homo sapiens GN=GUK1 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct: 16  GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 75

Query: 130 FAANLYGTSQCGRQ 143
           F+ NLYGTS+   Q
Sbjct: 76  FSGNLYGTSKVAVQ 89

Essential for recycling GMP and indirectly, cGMP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|P31006|KGUA_PIG Guanylate kinase OS=Sus scrofa GN=GUK1 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct: 16  GKSTLLKKLLQEHSSIFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 75

Query: 130 FAANLYGTSQC 140
           F+ NLYGTS+ 
Sbjct: 76  FSGNLYGTSKA 86

Essential for recycling GMP and indirectly, cGMP.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|P46195|KGUA_BOVIN Guanylate kinase OS=Bos taurus GN=GUK1 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQC 140
           FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+ 
Sbjct: 32  FGFSVSHTTRDPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKA 86

Essential for recycling GMP and indirectly, cGMP.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q8Z0I7|KGUA_NOSS1 Guanylate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=gmk PE=3 SV=1

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 19/140 (13%)

Query: 35  LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDR---FGFSVS 91
           +L+ + C +   NP SG           I+    +  GK + +  R++L R     +SVS
Sbjct: 4   VLSIQNCATTKENPLSG---------KLIILTGPSGVGKGTLM--RSLLQRHPELYYSVS 52

Query: 92  HTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCG----RQNGRN 147
            TTR PRPGEV+G++Y+FV+R+  EE IA GEFLE AEFA N YGT +       Q+G+ 
Sbjct: 53  ATTRPPRPGEVNGESYYFVSRSKFEELIAQGEFLESAEFAGNYYGTPREAVLNQVQSGKL 112

Query: 148 YLIFNTLA-AKCLPTVFPFA 166
            ++   LA A+ + T FP A
Sbjct: 113 VVLEIELAGARQIRTSFPEA 132

Essential for recycling GMP and indirectly, cGMP.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q3MD38|KGUA_ANAVT Guanylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gmk PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 14/106 (13%)

Query: 35  LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFLFLRTVLDR---FGFSVS 91
           +L+ + C +   NP SG           I+    +  GK + +  R++L R     +SVS
Sbjct: 4   VLSIQNCATTKENPSSG---------KLIVLTGPSGVGKGTLM--RSLLQRHPELYYSVS 52

Query: 92  HTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
            TTR PRPGEV+G++Y+F++R   EE +A GEFLE AEFA N YGT
Sbjct: 53  ATTRAPRPGEVNGESYYFISRNKFEELLAQGEFLESAEFAGNYYGT 98

Essential for recycling GMP and indirectly, cGMP.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q2YD10|KGUA_NITMU Guanylate kinase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gmk PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 8/102 (7%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GKTS +   L+T +D    S+S+T+R PRP E+DG+ YHFVTR   E+++   EFLE AE
Sbjct: 18  GKTSLVKALLQTGID-LSLSISYTSRQPRPEEMDGRDYHFVTRQVFEQKLQEDEFLESAE 76

Query: 130 FAANLYGTSQCG----RQNGRNYLI-FNTLAAKCLPTVFPFA 166
              N YGTS+        +GR+ L+  ++  A+ +  VFP A
Sbjct: 77  LYGNFYGTSKKWINETMTSGRDILLEIDSQGARQVRAVFPVA 118

Essential for recycling GMP and indirectly, cGMP.

Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q3SLI4|KGUA_THIDA Guanylate kinase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gmk PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 88  FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS--QCGRQ-- 143
            SVSHTTR PRPGE DG+ YHFV R   E+ +A GEFLEHAE   N YGTS  + G++  
Sbjct: 37  LSVSHTTRAPRPGESDGRDYHFVARDTFEKMLADGEFLEHAEVYGNFYGTSRGRIGQELD 96

Query: 144 NGRNYLI 150
            GR+ L+
Sbjct: 97  AGRDLLL 103

Essential for recycling GMP and indirectly, cGMP.

Thiobacillus denitrificans (strain ATCC 25259) (taxid: 292415)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q9P6I5|KGUA_SCHPO Guanylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1198.05 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+   D+ GFSVSHTTR PR GE DG  YHFVT+ + ++ +A  +F+E A 
Sbjct: 30  GKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKLVAEEKFVEWAV 89

Query: 130 FAANLYGTS 138
           F+ N+YGTS
Sbjct: 90  FSGNMYGTS 98

Essential for recycling GMP and indirectly, cGMP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q5RDQ2|MPP5_PONAB MAGUK p55 subfamily member 5 OS=Pongo abelii GN=MPP5 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           DRF  +V HTTR  R  EV G+ YHFV+R   E  IAAG+F+EH EF  NLYGTS
Sbjct: 505 DRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIEHGEFEKNLYGTS 559

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
118085483	198	PREDICTED: guanylate kinase isoform 1 [G	0.349	0.292	0.706	8e-18
449270438	198	Guanylate kinase [Columba livia]	0.349	0.292	0.706	9e-18
118085481	213	PREDICTED: guanylate kinase isoform 2 [G	0.349	0.272	0.706	9e-18
326921364	198	PREDICTED: guanylate kinase-like [Meleag	0.325	0.272	0.740	9e-18
395516153	202	PREDICTED: guanylate kinase [Sarcophilus	0.349	0.287	0.689	3e-17
126335960	198	PREDICTED: guanylate kinase-like [Monode	0.349	0.292	0.689	3e-17
126309917	198	PREDICTED: guanylate kinase-like [Monode	0.433	0.363	0.581	4e-17
426334062	197	PREDICTED: guanylate kinase isoform 2 [G	0.433	0.365	0.608	8e-17
426334060	218	PREDICTED: guanylate kinase isoform 1 [G	0.433	0.330	0.608	9e-17
426334070	241	PREDICTED: guanylate kinase isoform 6 [G	0.433	0.298	0.608	2e-16

>gi|118085483|ref|XP_001232001.1| PREDICTED: guanylate kinase isoform 1 [Gallus gallus] gi|363729733|ref|XP_003640692.1| PREDICTED: guanylate kinase [Gallus gallus]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQ 143
           FGFSVSHTTR PRPGEV+GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+   Q
Sbjct: 32  FGFSVSHTTRQPRPGEVNGKDYHFVTREEMKKEIDAGEFIEHAEFSGNMYGTSKGAVQ 89

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449270438|gb|EMC81109.1| Guanylate kinase [Columba livia]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQ 143
           FGFSVSHTTR PRPGEV+GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+   Q
Sbjct: 32  FGFSVSHTTRQPRPGEVNGKDYHFVTREEMQKEIDAGEFIEHAEFSGNMYGTSKGAVQ 89

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118085481|ref|XP_425960.2| PREDICTED: guanylate kinase isoform 2 [Gallus gallus]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQ 143
           FGFSVSHTTR PRPGEV+GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+   Q
Sbjct: 47  FGFSVSHTTRQPRPGEVNGKDYHFVTREEMKKEIDAGEFIEHAEFSGNMYGTSKGAVQ 104

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326921364|ref|XP_003206930.1| PREDICTED: guanylate kinase-like [Meleagris gallopavo]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 48/54 (88%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           FGFSVSHTTR PRPGEV+GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+
Sbjct: 32  FGFSVSHTTRQPRPGEVNGKDYHFVTREEMKKEIDAGEFIEHAEFSGNMYGTSK 85

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395516153|ref|XP_003762258.1| PREDICTED: guanylate kinase [Sarcophilus harrisii]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQ 143
           FGFSVSHTTR PRPGE +GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+   Q
Sbjct: 36  FGFSVSHTTRSPRPGEENGKDYHFVTREEMQKDIEAGEFIEHAEFSGNMYGTSKAAVQ 93

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126335960|ref|XP_001376774.1| PREDICTED: guanylate kinase-like [Monodelphis domestica]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 47/58 (81%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQ 143
           FGFSVSHTTR PRPGE +GK YHFVTR +M+  I AGEF+EHAEF+ N+YGTS+   Q
Sbjct: 32  FGFSVSHTTRNPRPGEENGKDYHFVTREEMQRDIDAGEFIEHAEFSGNMYGTSKAAVQ 89

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126309917|ref|XP_001378792.1| PREDICTED: guanylate kinase-like [Monodelphis domestica]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 2/74 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+   + FGFSVSHTTR PRPGE +GK YHFVTR +M+  I AG+F+EHAE
Sbjct: 16  GKSTLLKKLLQEYGNIFGFSVSHTTRNPRPGEENGKDYHFVTREEMQRDIDAGKFIEHAE 75

Query: 130 FAANLYGTSQCGRQ 143
           F+ N+YGTS+   Q
Sbjct: 76  FSGNMYGTSKAAVQ 89

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426334062|ref|XP_004028582.1| PREDICTED: guanylate kinase isoform 2 [Gorilla gorilla gorilla] gi|426334064|ref|XP_004028583.1| PREDICTED: guanylate kinase isoform 3 [Gorilla gorilla gorilla] gi|426334066|ref|XP_004028584.1| PREDICTED: guanylate kinase isoform 4 [Gorilla gorilla gorilla] gi|426334068|ref|XP_004028585.1| PREDICTED: guanylate kinase isoform 5 [Gorilla gorilla gorilla]

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+     FGFSVSHTTR PRPGE +GK YHFVTR  M+  IAAG+F+EHAE
Sbjct: 16  GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYHFVTREVMQRDIAAGDFIEHAE 75

Query: 130 FAANLYGTSQCGRQ 143
           F+ NLYGTS+   Q
Sbjct: 76  FSGNLYGTSKVAVQ 89

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426334060|ref|XP_004028581.1| PREDICTED: guanylate kinase isoform 1 [Gorilla gorilla gorilla]

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+     FGFSVSHTTR PRPGE +GK YHFVTR  M+  IAAG+F+EHAE
Sbjct: 37  GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYHFVTREVMQRDIAAGDFIEHAE 96

Query: 130 FAANLYGTSQCGRQ 143
           F+ NLYGTS+   Q
Sbjct: 97  FSGNLYGTSKVAVQ 110

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426334070|ref|XP_004028586.1| PREDICTED: guanylate kinase isoform 6 [Gorilla gorilla gorilla]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L   L+     FGFSVSHTTR PRPGE +GK YHFVTR  M+  IAAG+F+EHAE
Sbjct: 37  GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYHFVTREVMQRDIAAGDFIEHAE 96

Query: 130 FAANLYGTSQCGRQ 143
           F+ NLYGTS+   Q
Sbjct: 97  FSGNLYGTSKVAVQ 110

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
UNIPROTKB|E1C038	198	GUK1 "Uncharacterized protein"	0.325	0.272	0.740	1.7e-18
MGI|MGI:95871	198	Guk1 "guanylate kinase 1" [Mus	0.325	0.272	0.740	9.5e-18
RGD|1309638	198	Guk1 "guanylate kinase 1" [Rat	0.325	0.272	0.740	9.5e-18
UNIPROTKB|E9PTV0	219	Guk1 "Protein Guk1" [Rattus no	0.325	0.246	0.740	9.5e-18
UNIPROTKB|B1ANG9	218	GUK1 "Guanylate kinase" [Homo	0.433	0.330	0.594	2e-17
UNIPROTKB|B1ANH0	217	GUK1 "Guanylate kinase" [Homo	0.433	0.331	0.594	2e-17
UNIPROTKB|B1ANH1	241	GUK1 "Guanylate kinase" [Homo	0.433	0.298	0.594	2e-17
UNIPROTKB|B1ANH2	253	GUK1 "Guanylate kinase" [Homo	0.433	0.284	0.594	2e-17
UNIPROTKB|B1ANH6	242	GUK1 "Guanylate kinase" [Homo	0.433	0.297	0.594	2e-17
UNIPROTKB|Q16774	197	GUK1 "Guanylate kinase" [Homo	0.433	0.365	0.594	2e-17

UNIPROTKB|E1C038 GUK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 40/54 (74%), Positives = 48/54 (88%)

Query:    86 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
             FGFSVSHTTR PRPGEV+GK YHFVTR +M++ I AGEF+EHAEF+ N+YGTS+
Sbjct:    32 FGFSVSHTTRQPRPGEVNGKDYHFVTREEMKKEIDAGEFIEHAEFSGNMYGTSK 85

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

GO:0004385 "guanylate kinase activity" evidence=IEA

MGI|MGI:95871 Guk1 "guanylate kinase 1" [Mus musculus (taxid:10090)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query:    86 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
             FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+
Sbjct:    32 FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 85

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004385 "guanylate kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006163 "purine nucleotide metabolic process" evidence=ISO;IDA

GO:0006185 "dGDP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019673 "GDP-mannose metabolic process" evidence=ISO

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046037 "GMP metabolic process" evidence=ISO

GO:0046054 "dGMP metabolic process" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046711 "GDP biosynthetic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO;IDA

RGD|1309638 Guk1 "guanylate kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query:    86 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
             FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+
Sbjct:    32 FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 85

GO:0004385 "guanylate kinase activity" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006163 "purine nucleotide metabolic process" evidence=ISO

GO:0006185 "dGDP biosynthetic process" evidence=IDA

GO:0019673 "GDP-mannose metabolic process" evidence=IDA

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046037 "GMP metabolic process" evidence=IDA

GO:0046054 "dGMP metabolic process" evidence=IDA

GO:0046060 "dATP metabolic process" evidence=IDA

GO:0046711 "GDP biosynthetic process" evidence=IDA

GO:0046939 "nucleotide phosphorylation" evidence=ISO;IDA

UNIPROTKB|E9PTV0 Guk1 "Protein Guk1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/54 (74%), Positives = 46/54 (85%)

Query:    86 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
             FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+
Sbjct:    53 FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 106

GO:0004385 "guanylate kinase activity" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

UNIPROTKB|B1ANG9 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    37 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 96

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:    97 FSGNLYGTSKVAVQ 110

GO:0004385 "guanylate kinase activity" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

UNIPROTKB|B1ANH0 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    37 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 96

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:    97 FSGNLYGTSKVAVQ 110

GO:0004385 "guanylate kinase activity" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

UNIPROTKB|B1ANH1 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    37 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 96

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:    97 FSGNLYGTSKVAVQ 110

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

GO:0004385 "guanylate kinase activity" evidence=IEA

UNIPROTKB|B1ANH2 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    82 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 141

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:   142 FSGNLYGTSKVAVQ 155

GO:0004385 "guanylate kinase activity" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

UNIPROTKB|B1ANH6 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    16 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 75

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:    76 FSGNLYGTSKVAVQ 89

GO:0004385 "guanylate kinase activity" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

UNIPROTKB|Q16774 GUK1 "Guanylate kinase" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)

Query:    72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
             GK++ L   L+     FGFSVSHTTR PRPGE +GK Y+FVTR  M+  IAAG+F+EHAE
Sbjct:    16 GKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAE 75

Query:   130 FAANLYGTSQCGRQ 143
             F+ NLYGTS+   Q
Sbjct:    76 FSGNLYGTSKVAVQ 89

GO:0005524 "ATP binding" evidence=IEA

GO:0004385 "guanylate kinase activity" evidence=IDA

GO:0006163 "purine nucleotide metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0017144 "drug metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FQY7	KGUA_PSYA2	2, ., 7, ., 4, ., 8	0.5142	0.4036	0.3221	yes	N/A
Q0A5V3	KGUA_ALHEH	2, ., 7, ., 4, ., 8	0.5205	0.4337	0.3546	yes	N/A
Q16774	KGUA_HUMAN	2, ., 7, ., 4, ., 8	0.5945	0.4337	0.3654	yes	N/A
Q1Q973	KGUA_PSYCK	2, ., 7, ., 4, ., 8	0.5142	0.4036	0.3221	yes	N/A
P31006	KGUA_PIG	2, ., 7, ., 4, ., 8	0.6056	0.4156	0.3484	yes	N/A
Q9P6I5	KGUA_SCHPO	2, ., 7, ., 4, ., 8	0.5072	0.4036	0.3316	yes	N/A
Q8Z0I7	KGUA_NOSS1	2, ., 7, ., 4, ., 8	0.3928	0.7289	0.6080	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.4.8	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	166
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	2e-30
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	2e-30
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	4e-29
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	9e-26
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	1e-25
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	1e-24
PLN02772	398	PLN02772, PLN02772, guanylate kinase	7e-20
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	3e-15
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	6e-14

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score =  107 bits (269), Expect = 2e-30
 Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 6/71 (8%)

Query: 72  GKTSFLFLRTVLDR----FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH 127
           GK++ L  + +L+     FGFSVSHTTR PRPGEVDG  YHFV++ + E  I  GEFLE 
Sbjct: 11  GKSTLL--KRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEW 68

Query: 128 AEFAANLYGTS 138
           AEF  N YGTS
Sbjct: 69  AEFHGNYYGTS 79

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score =  108 bits (272), Expect = 2e-30
 Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 72  GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
           GK++ +  L        FS+S TTR PRPGEVDG  Y FV++ + EE I AGEFLE AE 
Sbjct: 12  GKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEV 71

Query: 131 AANLYGTS 138
             N YGT 
Sbjct: 72  HGNYYGTP 79

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score =  105 bits (266), Expect = 4e-29
 Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 72  GKTSFLFLRTVLDR---FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
           GK++ +  + +L+R      SVS TTR PRPGEVDG  Y FV++ + EE I  GEFLE A
Sbjct: 17  GKSTLV--KALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWA 74

Query: 129 EFAANLYGTS 138
           E   N YGT 
Sbjct: 75  EVFGNYYGTP 84

Length = 205

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score = 96.8 bits (242), Expect = 9e-26
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 72  GKTSFLFLRTVLDRFG--FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ +  + +L+     FSVS TTR PRPGEVDG  Y FVT  + EE I   EFLE AE
Sbjct: 16  GKSTLV--KALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAE 73

Query: 130 FAANLYGTS 138
           +  N YGTS
Sbjct: 74  YHGNYYGTS 82

Length = 191

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 96.3 bits (240), Expect = 1e-25
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           ++FG+SVSHTTR PRPGEVDGK YHFV++ +ME  I+A EFLE+AEF  N YGTS+
Sbjct: 28  EKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAEFNGNYYGTSK 83

Length = 183

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 93.5 bits (233), Expect = 1e-24
 Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 8/72 (11%)

Query: 72  GKTSFLFLRTVL-----DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLE 126
           GK +   L   L     D F   VSHTTR PRPGEV+G  YHFV++ + E+ I +G FLE
Sbjct: 4   GKGT---LLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60

Query: 127 HAEFAANLYGTS 138
             E+  N YGTS
Sbjct: 61  WGEYEGNYYGTS 72

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 84.5 bits (209), Expect = 7e-20
 Identities = 33/55 (60%), Positives = 36/55 (65%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
             FGFSVSHTTR PR  E DG  YHF  R+ ME+ I  G+FLE A    NLYGTS
Sbjct: 161 SMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTS 215

Length = 398

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 81  TVLDR-------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAAN 133
            VL R       F F V+ TTR  RPGE+DG  YHFVT  +  E I+  E LE AE   N
Sbjct: 28  AVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87

Query: 134 LYG 136
            YG
Sbjct: 88  YYG 90

Length = 206

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score = 65.8 bits (160), Expect = 6e-14
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           F FS+S TTR PRPG+ +GK Y F+T  + ++ IA GEFLE AE   N YGT
Sbjct: 31  FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.96
PRK14737	186	gmk guanylate kinase; Provisional	99.95
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.95
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.93
KOG0609|consensus	542		99.92
PLN02772	398	guanylate kinase	99.92
PRK14738	206	gmk guanylate kinase; Provisional	99.9
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.88
PRK00300	205	gmk guanylate kinase; Provisional	99.8
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.78
KOG0707|consensus	231		99.78
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.55
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.51
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.47
COG3709	192	Uncharacterized component of phosphonate metabolis	99.47
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.46
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.41
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.39
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.3
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.29
KOG0058|consensus	716		99.28
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.27
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.24
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.19
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.19
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.16
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.15
PRK08356	195	hypothetical protein; Provisional	99.14
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.14
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.13
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.13
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.12
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.11
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.11
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.11
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.1
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.1
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.09
KOG0055|consensus	1228		99.08
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.08
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.08
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.06
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.06
KOG0055|consensus	1228		99.05
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.05
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.05
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.04
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.04
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.04
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.03
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.02
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.02
COG4987	573	CydC ABC-type transport system involved in cytochr	99.01
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.01
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.01
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.99
COG4988	559	CydD ABC-type transport system involved in cytochr	98.99
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.99
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.99
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.97
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.95
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.94
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.94
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.94
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.93
PLN03232	1495	ABC transporter C family member; Provisional	98.92
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.91
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.91
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.91
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.9
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.89
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.89
PLN03130	1622	ABC transporter C family member; Provisional	98.89
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.89
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.89
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.88
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.88
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.88
KOG0056|consensus	790		98.88
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.88
PTZ00243	1560	ABC transporter; Provisional	98.87
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.87
COG4181	228	Predicted ABC-type transport system involved in ly	98.86
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.86
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.86
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.86
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.85
KOG0057|consensus	591		98.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.85
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.85
PRK10908	222	cell division protein FtsE; Provisional	98.85
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.85
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.84
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.84
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.84
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.84
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.84
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.83
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.83
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.83
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.82
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.82
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.82
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.82
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.82
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.81
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.81
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.81
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.81
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.81
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.8
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.8
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.8
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.8
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.79
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.79
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.78
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.78
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.78
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.78
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.77
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.77
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.76
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.76
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.75
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.75
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.75
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.75
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.75
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.74
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.73
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.73
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.72
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.71
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.71
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.7
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.7
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.7
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.7
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.7
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.7
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.69
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.69
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.68
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.68
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.68
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.68
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.68
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.67
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.67
KOG0708|consensus	359		98.67
PRK00098	298	GTPase RsgA; Reviewed	98.66
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.66
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.66
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.65
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.65
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.65
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.65
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.64
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.64
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.64
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.64
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.64
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.64
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.64
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.63
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.63
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.63
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.62
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.62
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.62
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.62
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.62
COG4559	259	ABC-type hemin transport system, ATPase component	98.62
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.62
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.61
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.61
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.6
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.6
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.58
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.58
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.58
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.58
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.57
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.57
cd03246	173	ABCC_Protease_Secretion This family represents the	98.57
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.57
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.56
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.56
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.56
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.56
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.56
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.56
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.55
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.55
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.54
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.54
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.54
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.54
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.53
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.53
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.53
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.53
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.52
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.52
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.52
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.52
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.52
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.52
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.51
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.5
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.5
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.5
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.5
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.49
PRK10938	490	putative molybdenum transport ATP-binding protein	98.49
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.49
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.49
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.48
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.48
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.48
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.48
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.47
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.47
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.47
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.47
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.47
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PLN03130	1622	ABC transporter C family member; Provisional	98.46
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.46
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.46
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.46
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.46
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.46
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.45
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.45
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.45
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.45
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.44
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.44
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.44
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.44
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.44
PLN03232	1495	ABC transporter C family member; Provisional	98.44
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.42
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.41
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.41
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.41
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.41
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.41
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.4
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.4
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.4
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.4
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.4
PRK11147	635	ABC transporter ATPase component; Reviewed	98.39
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.39
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.38
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.38
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.37
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.37
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.37
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.37
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.36
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.36
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.36
COG1123	539	ATPase components of various ABC-type transport sy	98.36
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.35
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.34
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.34
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.34
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.33
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.33
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.33
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.32
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.32
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.31
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.3
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.3
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.3
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.3
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.3
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.3
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.29
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.29
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.29
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.28
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.28
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.27
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.26
PRK11147	635	ABC transporter ATPase component; Reviewed	98.26
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.24
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.24
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.24
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.23
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.23
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK10938	490	putative molybdenum transport ATP-binding protein	98.22
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.2
PLN03073	718	ABC transporter F family; Provisional	98.19
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.19
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.18
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.17
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.17
PLN03211	659	ABC transporter G-25; Provisional	98.17
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.15
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.15
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.13
PLN03073	718	ABC transporter F family; Provisional	98.12
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.12
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.12
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.11
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.11
PLN02840	421	tRNA dimethylallyltransferase	98.11
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.11
PLN03140	1470	ABC transporter G family member; Provisional	98.11
COG1123	539	ATPase components of various ABC-type transport sy	98.11
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.1
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.09
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.09
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.08
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK13409	590	putative ATPase RIL; Provisional	98.04
PRK13409	590	putative ATPase RIL; Provisional	98.04
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.03
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.99
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.98
COG0488	530	Uup ATPase components of ABC transporters with dup	97.98
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.96
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	97.95
KOG0054|consensus	1381		97.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.88
COG0488	530	Uup ATPase components of ABC transporters with dup	97.88
PLN03140	1470	ABC transporter G family member; Provisional	97.88
COG1162	301	Predicted GTPases [General function prediction onl	97.84
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.83
KOG0054|consensus	1381		97.81
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.8
KOG0061|consensus	613		97.76
COG4178	604	ABC-type uncharacterized transport system, permeas	97.73
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.71
COG4172	534	ABC-type uncharacterized transport system, duplica	97.7
PLN02748	468	tRNA dimethylallyltransferase	97.67
KOG0059|consensus	885		97.67
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.64
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.58
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.53
PLN02165	334	adenylate isopentenyltransferase	97.53
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.46
PRK08118	167	topology modulation protein; Reviewed	97.46
PTZ00243	1560	ABC transporter; Provisional	97.39
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.39
KOG0927|consensus	614		97.39
KOG0060|consensus	659		97.39
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.38
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.37
KOG0066|consensus	807		97.32
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.3
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.25
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.24
smart00382	148	AAA ATPases associated with a variety of cellular	97.24
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.23
PRK09825	176	idnK D-gluconate kinase; Provisional	97.23
KOG0064|consensus	728		97.22
PRK05480	209	uridine/cytidine kinase; Provisional	97.22
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.2
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.18
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.18
COG4172	534	ABC-type uncharacterized transport system, duplica	97.18
PRK08233	182	hypothetical protein; Provisional	97.17
PRK06762	166	hypothetical protein; Provisional	97.14
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.13
PRK06761	282	hypothetical protein; Provisional	97.13
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.13
PRK00698	205	tmk thymidylate kinase; Validated	97.09
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.07
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.05
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.04
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.02
PRK07261	171	topology modulation protein; Provisional	97.0
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.0
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.97
KOG3354|consensus	191		96.97
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	96.97
PRK12288	347	GTPase RsgA; Reviewed	96.97
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.94
PRK05541	176	adenylylsulfate kinase; Provisional	96.94
KOG0065|consensus	1391		96.94
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.93
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.93
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.92
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.91
PTZ00301	210	uridine kinase; Provisional	96.91
PRK12289	352	GTPase RsgA; Reviewed	96.91
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.89
PLN02796	347	D-glycerate 3-kinase	96.86
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.86
PRK01889	356	GTPase RsgA; Reviewed	96.85
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.85
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.85
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.85
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.83
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.82
PRK14527	191	adenylate kinase; Provisional	96.82
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.82
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.8
PRK14530	215	adenylate kinase; Provisional	96.79
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.79
PRK03846	198	adenylylsulfate kinase; Provisional	96.76
PRK00131	175	aroK shikimate kinase; Reviewed	96.75
PRK06696	223	uridine kinase; Validated	96.72
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.72
KOG1384|consensus	348		96.71
PRK13975	196	thymidylate kinase; Provisional	96.71
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	96.7
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	96.7
PRK00889	175	adenylylsulfate kinase; Provisional	96.68
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.66
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.65
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.65
PRK06547	172	hypothetical protein; Provisional	96.64
PF09439	181	SRPRB: Signal recognition particle receptor beta s	96.62
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	96.61
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.61
PRK15494	339	era GTPase Era; Provisional	96.6
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.6
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.59
PRK06217	183	hypothetical protein; Validated	96.59
PRK05057	172	aroK shikimate kinase I; Reviewed	96.58
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.56
PF00004	132	AAA: ATPase family associated with various cellula	96.56
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	96.56
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.55
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.54
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.54
PHA02530	300	pseT polynucleotide kinase; Provisional	96.52
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.52
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.51
PRK00089	292	era GTPase Era; Reviewed	96.49
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	96.49
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.48
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	96.48
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.46
PRK03839	180	putative kinase; Provisional	96.46
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	96.44
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.44
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.43

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.96  E-value=2.2e-29  Score=199.68  Aligned_cols=104  Identities=38%  Similarity=0.524  Sum_probs=96.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      +|.+++|.||||+|||||+  |++..  .+...||+|||+||+||++|++|+|+|.++|+.++.++.|+||.++.||+||
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            5779999999999999999  77776  6999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      |+...+++++.     +++++=++...+|..+|
T Consensus        81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p  113 (191)
T COG0194          81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMP  113 (191)
T ss_pred             CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCC
Confidence            99999999987     57778888888888776

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.95  E-value=5.3e-29  Score=197.70  Aligned_cols=105  Identities=36%  Similarity=0.543  Sum_probs=98.2

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      .+++|+|+||||||||||+  |+..+|+ +...++||||+|++||++|++|+|+|.++|+.+++++.|+||+++.||+||
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            3569999999999999999  8888886 678899999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      +++++|+++++     +++++.++++.|+..||
T Consensus        82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~  114 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFP  114 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCC
Confidence            99999999988     57889999999998877

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.95  E-value=1.1e-28  Score=193.80  Aligned_cols=105  Identities=39%  Similarity=0.558  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      ++|+++|+|||||||+||+  |+..+|++|+.+++||||+|++||++|++|+|++.++|+++++++.|+||+++.|++||
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            3679999999999999999  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVF  163 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~  163 (166)
                      ++.++|+.+++     ++++++++++.|+...
T Consensus        81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~  112 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAG  112 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCT
T ss_pred             hccchhhHhhhcCCcEEEEccHHHHHHHHhcc
Confidence            99999999988     6788999999987653

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>smart00072 GuKc Guanylate kinase homologues

Probab=99.93  E-value=1.9e-26  Score=181.43  Aligned_cols=106  Identities=37%  Similarity=0.557  Sum_probs=99.3

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT  137 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~  137 (166)
                      +++++|+|||||||+||.  |+..+|+.|..+++||||+|++||.+|++|+|++.++|+.++++|.|+||+++.||+||+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            579999999999999999  888888889999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        138 SQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      +.++|+++++     ++++++++++.|+..+|.
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~  114 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLY  114 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCC
Confidence            9999999987     678889999999876654

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG0609|consensus

Probab=99.92  E-value=8.4e-26  Score=200.53  Aligned_cols=142  Identities=35%  Similarity=0.513  Sum_probs=124.8

Q ss_pred             hhhhhhhhHH-----HHHH-hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccccc
Q psy18088         13 CCQMTVTKQS-----YIRE-NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        13 ~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      +|+----|.+     |+.+ ++.++..+.++||+|+.+..           ..+|+++|+||+|+|...|.  |+..+|+
T Consensus       298 ~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~-----------~~rrtlVLiGa~GvGr~elk~~Li~~~p~  366 (542)
T KOG0609|consen  298 RCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPP-----------FRRRTLVLIGAQGVGRRELKNKLIELNPD  366 (542)
T ss_pred             hhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcc-----------cccceEEEECCcccchHHHHHHHHhhCcc
Confidence            5655444444     4443 67799999999999988842           24679999999999999999  9999999


Q ss_pred             ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhC
Q psy18088         85 RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCL  159 (166)
Q Consensus        85 ~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l  159 (166)
                      +|+.+||||||+|+++|.+|++|+|||+++|+++++++.|+||++|.+|+|||+.++|+.+++     +++++|++++.|
T Consensus       367 ~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~l  446 (542)
T KOG0609|consen  367 RFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVL  446 (542)
T ss_pred             ccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999998     689999999999


Q ss_pred             Cc--cCCC
Q psy18088        160 PT--VFPF  165 (166)
Q Consensus       160 ~~--~~p~  165 (166)
                      ++  .-||
T Consensus       447 Rt~Ef~Py  454 (542)
T KOG0609|consen  447 RTAEFKPY  454 (542)
T ss_pred             hhhcccce
Confidence            54  4444

>PLN02772 guanylate kinase

Probab=99.92  E-value=1.5e-25  Score=195.27  Aligned_cols=105  Identities=36%  Similarity=0.489  Sum_probs=98.0

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      .+++++|+|||||||+||+  |+..+|..|+++++||||+|++||.+|++|+|++.++|+.+++++.|+||+++.||+||
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            4679999999999999999  88888888999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVF  163 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~  163 (166)
                      +++++++++++     ++++++++.+.|+..+
T Consensus       214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~  245 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASS  245 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc
Confidence            99999999987     6789999999887654

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.90  E-value=5.5e-24  Score=170.74  Aligned_cols=105  Identities=31%  Similarity=0.463  Sum_probs=95.0

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      .+++++|+||||||||||+  |.+..+ .|..++++|||+|++||++|++|+|++.++|..+++++.|++|+++.||+||
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YG   90 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYG   90 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceec
Confidence            5779999999999999999  555444 6999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      +++++|+++++     +++++.++++.|+..+|
T Consensus        91 t~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~p  123 (206)
T PRK14738         91 VPKAPVRQALASGRDVIVKVDVQGAASIKRLVP  123 (206)
T ss_pred             CCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCC
Confidence            99999999887     56678888888887776

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.88  E-value=3.9e-23  Score=156.39  Aligned_cols=103  Identities=44%  Similarity=0.710  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCCh
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ  139 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~  139 (166)
                      +++|+||||||||||+  |...++..|..++++|||+|+.||.+|++|+|++.++|.++++++.|++|+++.+|+||+++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            4789999999999999  66666767999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        140 CGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       140 ~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      +.++++++     +++++.++++.|+..+|
T Consensus        81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~  110 (137)
T cd00071          81 AAVEEALAEGKIVILEIDVQGARQVKKSYP  110 (137)
T ss_pred             HHHHHHHhCCCeEEEEecHHHHHHHHHcCC
Confidence            99999988     57788999999987765

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.80  E-value=7.4e-20  Score=144.89  Aligned_cols=105  Identities=36%  Similarity=0.507  Sum_probs=92.3

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      ++++|+|+||||||||||+  |...++ .+...+++|||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|.||
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            3569999999999999999  555555 6888999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      ++...++++++     +++++.++...+++.+|
T Consensus        83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~  115 (205)
T PRK00300         83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP  115 (205)
T ss_pred             CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC
Confidence            99999999887     45677888777766554

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.78  E-value=4e-19  Score=137.88  Aligned_cols=103  Identities=39%  Similarity=0.576  Sum_probs=90.5

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT  137 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~  137 (166)
                      +++++|+||||||||||+  |...++. +...+++|||+|+.|+.+|.+|+|++.++|...+.++.|+++..+.+|.||+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   79 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT   79 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence            458999999999999999  5555664 6778899999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088        138 SQCGRQNGRN-----YLIFNTLAAKCLPTVF  163 (166)
Q Consensus       138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~  163 (166)
                      +.+.++++++     +++++..+.+.++..+
T Consensus        80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~  110 (180)
T TIGR03263        80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKF  110 (180)
T ss_pred             cHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence            9999999887     4677777877666555

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0707|consensus

Probab=99.78  E-value=1.5e-19  Score=147.43  Aligned_cols=99  Identities=38%  Similarity=0.518  Sum_probs=88.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS  138 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~  138 (166)
                      +.++|.||||+||+||+  |++.+++.|+..++||||.||.||++|++|+|++.++|..++..+.|+||+++.+|+||++
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts  117 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS  117 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence            68999999999999999  8888998999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHh-----hccCChhHHhhC
Q psy18088        139 QCGRQNGRN-----YLIFNTLAAKCL  159 (166)
Q Consensus       139 ~~~I~~ile-----~v~L~~~~~~~l  159 (166)
                      .+++++...     .++++-++....
T Consensus       118 i~av~~~~~~gk~~ildId~qg~~~i  143 (231)
T KOG0707|consen  118 IAAVQRLMLSGKVCILDIDLQGVQPI  143 (231)
T ss_pred             HHHHHHHHhcCCcceeehhhcCceee
Confidence            988877766     344444444444

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.55  E-value=1.2e-15  Score=126.08  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=83.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      ++.++.+++.+. ..++.++|+.|.+||     +++|+||||||||||+ +++++..            |..|+  ++|.
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GE-----fvsilGpSGcGKSTLLriiAGL~~------------p~~G~V~~~g~   65 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGE-----FVAILGPSGCGKSTLLRLIAGLEK------------PTSGEVLLDGR   65 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCc
Confidence            456778888886 788999999999999     9999999999999999 9999887            88887  4665


Q ss_pred             ceeecCHHHHHHHHHcCCccceeeehhh-hcCCC-----h----HHHHHHHhhccCChhH
Q psy18088        106 AYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS-----Q----CGRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~-----~----~~I~~ile~v~L~~~~  155 (166)
                      .. .-...+...++|+..+++|.++.+| ..|..     +    +.+++.++.|+|...+
T Consensus        66 ~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~  124 (248)
T COG1116          66 PV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE  124 (248)
T ss_pred             cc-CCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh
Confidence            43 2234456667899999999999999 34433     2    2456666677776443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.51  E-value=1e-14  Score=126.19  Aligned_cols=109  Identities=16%  Similarity=0.205  Sum_probs=90.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      .+++++|++.+. ..+++++|+.|++||     +++|+||||||||||+ +|+++..            |.+|+  ++|+
T Consensus         5 ~l~i~~v~k~yg~~~av~~isl~i~~Ge-----f~~lLGPSGcGKTTlLR~IAGfe~------------p~~G~I~l~G~   67 (352)
T COG3842           5 ALEIRNVSKSFGDFTAVDDISLDIKKGE-----FVTLLGPSGCGKTTLLRMIAGFEQ------------PSSGEILLDGE   67 (352)
T ss_pred             eEEEEeeeeecCCeeEEecceeeecCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence            677888998886 888999999999999     9999999999999999 9999987            99997  4898


Q ss_pred             ceeecCHHH--HHHHHHcCCccceeeehhh-hcCCC-----h-H----HHHHHHhhccCChhH
Q psy18088        106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGTS-----Q-C----GRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~~-----~-~----~I~~ile~v~L~~~~  155 (166)
                      ++.-++.++  +..++|+..++++.++.+| .||+.     . +    .++++++.|.|...+
T Consensus        68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~  130 (352)
T COG3842          68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA  130 (352)
T ss_pred             ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh
Confidence            877666544  5678999999999999999 78876     1 2    456666677777543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.47  E-value=5.2e-14  Score=110.74  Aligned_cols=84  Identities=17%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc-ccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV-LDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT  137 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~-~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~  137 (166)
                      +.+++|+||||||||||+ ++... +..|....+.+||+++.+   +.++.+++.++|.+++..+.|.+++.+.||+||+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            558999999999999999 55543 324666677788876443   5578889999999999999998777899999999


Q ss_pred             ChHHHHHHHh
Q psy18088        138 SQCGRQNGRN  147 (166)
Q Consensus       138 ~~~~I~~ile  147 (166)
                      ++ ++++.++
T Consensus        79 ~~-~~~~~l~   87 (186)
T PRK10078         79 GI-EIDLWLH   87 (186)
T ss_pred             cH-HHHHHHh
Confidence            98 5888776

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.3e-13  Score=108.06  Aligned_cols=101  Identities=20%  Similarity=0.193  Sum_probs=79.9

Q ss_pred             cCCcEEEEEcCCCCChhhhc--ccccccc--ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhh
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRTVLD--RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAAN  133 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~~~~--~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn  133 (166)
                      +++++|+++||||+||+||+  ....++.  ++.++-.+.||+...|   |.++..+|..+|.++-.+|.|.-.++..|.
T Consensus         3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL   79 (192)
T COG3709           3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGL   79 (192)
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCc
Confidence            46889999999999999999  4444444  4889999999987665   457778999999999999999999999999


Q ss_pred             hcCCChHHHHHHHh---hccCC------hhHHhhCCcc
Q psy18088        134 LYGTSQCGRQNGRN---YLIFN------TLAAKCLPTV  162 (166)
Q Consensus       134 ~yG~~~~~I~~ile---~v~L~------~~~~~~l~~~  162 (166)
                      .||++.+ |++.++   .++.|      |++...+.++
T Consensus        80 ~Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~~L  116 (192)
T COG3709          80 SYGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQL  116 (192)
T ss_pred             cccCchh-HHHHHhCCCEEEEeccHhhhHHHHHhhhcc
Confidence            9999965 777666   34444      5555555443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.46  E-value=9.9e-14  Score=115.63  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      |.++++|++.+. ..+.++.+++|..||     +++|+|||||||||++ +|+++-.            |.+|+  ++|+
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~ge-----f~vliGpSGsGKTTtLkMINrLie------------pt~G~I~i~g~   63 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGE-----FLVLIGPSGSGKTTTLKMINRLIE------------PTSGEILIDGE   63 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCe-----EEEEECCCCCcHHHHHHHHhcccC------------CCCceEEECCe
Confidence            457889999996 667889999999999     9999999999999999 9999887            99998  4888


Q ss_pred             ceeecCHHHH----HHHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCCh-hHHhhC
Q psy18088        106 AYHFVTRADM----EERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNT-LAAKCL  159 (166)
Q Consensus       106 ~y~fvs~~~f----~~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~-~~~~~l  159 (166)
                      +..-++..+.    .+.+|+-.++++.++..|      +-|-+++    .+++.++.++|+| +..+++
T Consensus        64 ~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry  132 (309)
T COG1125          64 DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY  132 (309)
T ss_pred             ecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC
Confidence            7665555554    456899999999999988      3455554    4566667899987 354444

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.41  E-value=7.4e-14  Score=120.26  Aligned_cols=108  Identities=14%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             ceEEeeecceeeec-CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTCIS-ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .+++.++++.+... ++.+.|+.|++||     +++|+||||||||||+ +|+++..            |.+|++  +|.
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Ge-----f~vllGPSGcGKSTlLr~IAGLe~------------~~~G~I~i~g~   65 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGE-----FVVLLGPSGCGKSTLLRMIAGLEE------------PTSGEILIDGR   65 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence            45677888888755 8889999999999     9999999999999999 9999987            999984  887


Q ss_pred             ceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----ChHHH----HHHHhhccCChh
Q psy18088        106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQCGR----QNGRNYLIFNTL  154 (166)
Q Consensus       106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~~~I----~~ile~v~L~~~  154 (166)
                      +...++..+  +...+|+..+.++.++.+| .||+     +++++    +++.+.+.+++.
T Consensus        66 ~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l  126 (338)
T COG3839          66 DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL  126 (338)
T ss_pred             ECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence            755554443  3335788899999999999 4554     34444    455556666543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.39  E-value=8.2e-13  Score=102.57  Aligned_cols=83  Identities=18%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             cEEEEEcCCCCChhhhc--ccccccc--ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLD--RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~--~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      ++++|+||||||||||+  |...++.  .+.+..++|||+++   .+|.+|++++.++|..+...+.|.++..+.++.||
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            48999999999999999  4443332  35677899999753   46889999999999999999999999999999999


Q ss_pred             CChHHHHHHHh
Q psy18088        137 TSQCGRQNGRN  147 (166)
Q Consensus       137 ~~~~~I~~ile  147 (166)
                      ++.. +...+.
T Consensus        79 ~~~~-i~~~~~   88 (179)
T TIGR02322        79 IPAE-IDQWLE   88 (179)
T ss_pred             ChHH-HHHHHh
Confidence            9873 555554

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.30  E-value=5.5e-12  Score=103.36  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH---H
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD---M  115 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~---f  115 (166)
                      ..++.++++.|++||     +++|+||||||||||+ ++..+-.            |.+|.  ++|.+....+..+   |
T Consensus        18 ~~~L~~v~l~i~~Ge-----~vaI~GpSGSGKSTLLniig~ld~------------pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136          18 VEALKDVNLEIEAGE-----FVAIVGPSGSGKSTLLNLLGGLDK------------PTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             eEecccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEcCcCCHHHHHHH
Confidence            568889999999999     9999999999999999 9998876            88887  5887766666544   3


Q ss_pred             HH-----HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCChhHH
Q psy18088        116 EE-----RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNTLAA  156 (166)
Q Consensus       116 ~~-----~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~~~~  156 (166)
                      ++     .+|+-.+++..++.+|.      .|.+.    ..++++++.|+|++...
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~  136 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL  136 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc
Confidence            33     37888899999999982      34443    34555666777775444

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.29  E-value=6.8e-12  Score=103.65  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      ..+...|++.+. ..+++++++.|.+||     +++|+||||+|||||+ +|.++-.            |..||  ++|.
T Consensus         8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Ge-----i~~iiGgSGsGKStlLr~I~Gll~------------P~~GeI~i~G~   70 (263)
T COG1127           8 LIEVRGVTKSFGDRVILDGVDLDVPRGE-----ILAILGGSGSGKSTLLRLILGLLR------------PDKGEILIDGE   70 (263)
T ss_pred             eEEEeeeeeecCCEEEecCceeeecCCc-----EEEEECCCCcCHHHHHHHHhccCC------------CCCCeEEEcCc
Confidence            566778888885 668899999999998     8999999999999999 7777664            88998  4898


Q ss_pred             ceeecCHHHHHH-------HHHcCCccceeeehhh-------hcCCChHHHHHHH----hhccCChhHHhhCC
Q psy18088        106 AYHFVTRADMEE-------RIAAGEFLEHAEFAAN-------LYGTSQCGRQNGR----NYLIFNTLAAKCLP  160 (166)
Q Consensus       106 ~y~fvs~~~f~~-------~~~~~~fle~~~~~gn-------~yG~~~~~I~~il----e~v~L~~~~~~~l~  160 (166)
                      ++.-.+.++...       ++|++.++...++.+|       +-..+++.++++.    +.|+|.+.+.+.++
T Consensus        71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P  143 (263)
T COG1127          71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP  143 (263)
T ss_pred             chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence            887778766533       3789999999999888       2345666666654    47888887666543

>KOG0058|consensus

Probab=99.28  E-value=3.8e-12  Score=117.54  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=82.7

Q ss_pred             CceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      |-.++.+|++.+    ..+++.+++|.|++||     .++|+||||+||||++ |+.++.+            |.+|.  
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe-----~vALVGPSGsGKSTiasLL~rfY~------------PtsG~Il  526 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE-----VVALVGPSGSGKSTIASLLLRFYD------------PTSGRIL  526 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEE
Confidence            467888988887    3678999999999888     8999999999999999 9999998            99998  


Q ss_pred             cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHH
Q psy18088        102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGR  146 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~il  146 (166)
                      +||++...++..-+++.   +.|...+..+++.+| .||.+..+.+++.
T Consensus       527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~  575 (716)
T KOG0058|consen  527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIE  575 (716)
T ss_pred             ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHH
Confidence            49998766676666654   466778889999999 8998764444443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=9.2e-12  Score=101.61  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=79.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      +.++.++++.+. ..++.++|+.|++||     .++|+||||||||||+ .++.+..            |.+|+  ++|.
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Ge-----vv~iiGpSGSGKSTlLRclN~LE~------------~~~G~I~i~g~   64 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGE-----VVVIIGPSGSGKSTLLRCLNGLEE------------PDSGSITVDGE   64 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCC-----EEEEECCCCCCHHHHHHHHHCCcC------------CCCceEEECCE
Confidence            456778899996 778999999999999     8999999999999999 8888876            88887  4775


Q ss_pred             ceeec-CHHHHHH----HHHcCCccceeeehhhh-------cCCChHHHHH----HHhhccCChhH
Q psy18088        106 AYHFV-TRADMEE----RIAAGEFLEHAEFAANL-------YGTSQCGRQN----GRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fv-s~~~f~~----~~~~~~fle~~~~~gn~-------yG~~~~~I~~----ile~v~L~~~~  155 (166)
                      +...- +...+++    .+|+-.+.++.++.+|.       .|.++++.++    .++.|+|.+.+
T Consensus        65 ~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka  130 (240)
T COG1126          65 DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA  130 (240)
T ss_pred             eccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh
Confidence            42211 2222222    36888899999999882       5667654443    33356666554

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.24  E-value=9.5e-12  Score=111.61  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      -.++++|++.+.  ..++.+.++.+++|+     .++|+||||||||||+ |+.++.+            |.+|+  ++|
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~-----~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~i~g  396 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGE-----RVAILGPSGSGKSTLLMLLTGLLD------------PLQGEVTLDG  396 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECC
Confidence            367888887763  457899999999888     8999999999999999 8888776            88998  488


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      ++..-+ .+++.+.   +.|+.++..+++.+| .||.   +.+++.++++.+.+++
T Consensus       397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~  451 (529)
T TIGR02868       397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLAD  451 (529)
T ss_pred             EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHH
Confidence            886656 6666553   567788999999999 6774   3467888888777653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.19  E-value=3e-11  Score=109.40  Aligned_cols=103  Identities=16%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .++++|++.+.  .+++.++++.+++|+     .++|+||||||||||+ |+.++.+            |.+|++  ||+
T Consensus       329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge-----~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~  391 (567)
T COG1132         329 IEFENVSFSYPGKKPVLKDISFSIEPGE-----KVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGI  391 (567)
T ss_pred             EEEEEEEEEcCCCCccccCceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCE
Confidence            67889998886  478999999999888     8999999999999999 8888887            888984  899


Q ss_pred             ceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhcc
Q psy18088        106 AYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLI  150 (166)
Q Consensus       106 ~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~  150 (166)
                      +..-++....++.   +.|+.++..+++.+| .||.+   .+++.++++...
T Consensus       392 dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~  443 (567)
T COG1132         392 DIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLAN  443 (567)
T ss_pred             ehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence            8887888887775   457788888999999 78864   467777777554

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.19  E-value=2.7e-11  Score=112.05  Aligned_cols=107  Identities=15%  Similarity=0.102  Sum_probs=86.7

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      -.++++|++.+.   ..++.++++.+++|+     .++|+||||||||||+ |+.++..            |.+|++  |
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge-----~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~id  513 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGE-----FVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYD  513 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEEC
Confidence            477889988773   468899999999888     8999999999999999 8888776            889984  9


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcC--CChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG--TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG--~~~~~I~~ile~v~L~~  153 (166)
                      |++..-++.+.+++.   +.|+.++..+++.+| .+|  .+.+++.++++.+++++
T Consensus       514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~  569 (686)
T TIGR03797       514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAE  569 (686)
T ss_pred             CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHH
Confidence            998877888887765   467778888999999 456  45677888888777654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.16  E-value=3.9e-11  Score=108.92  Aligned_cols=106  Identities=21%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      -.++++|++.+  ...++.+.++.+++|+     .++|+||||||||||+ |+.++.             |.+|+  ++|
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~-----~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g  410 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQ-----RIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKING  410 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECC
Confidence            36677776322  3457889999999888     8999999999999999 777654             44687  488


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      ++..-++.+.+.+.   +.|+.++..+++.+| .||.   +.+++.++++.+.+++
T Consensus       411 ~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~  466 (588)
T PRK11174        411 IELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSE  466 (588)
T ss_pred             EecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHH
Confidence            88877788887774   567889999999999 6774   4567788887766553

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.15  E-value=2.3e-11  Score=97.51  Aligned_cols=101  Identities=15%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             eeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeec
Q psy18088         34 ILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFV  110 (166)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fv  110 (166)
                      +.|.|++....+ ..|..|..+|     +++|+||||+|||||+ ||+++..            |..|+  ++|+++.-.
T Consensus         5 ~~V~~~y~~~~~-~fdl~v~~ge-----~vAi~GpSGaGKSTLLnLIAGF~~------------P~~G~i~i~g~d~t~~   66 (231)
T COG3840           5 DDVRFSYGHLPM-RFDLTVPAGE-----IVAILGPSGAGKSTLLNLIAGFET------------PASGEILINGVDHTAS   66 (231)
T ss_pred             cceEEeeCcceE-EEEEeecCCc-----EEEEECCCCccHHHHHHHHHhccC------------CCCceEEEcCeecCcC
Confidence            344444433321 2345566666     8999999999999999 9999887            88887  488876543


Q ss_pred             CHHH--HHHHHHcCCccceeeehhh-hcCCCh---------HHHHHHHhhccCC
Q psy18088        111 TRAD--MEERIAAGEFLEHAEFAAN-LYGTSQ---------CGRQNGRNYLIFN  152 (166)
Q Consensus       111 s~~~--f~~~~~~~~fle~~~~~gn-~yG~~~---------~~I~~ile~v~L~  152 (166)
                      ...+  +..++|.+.++.+.++..| -.|.+.         +.++.++..++|.
T Consensus        67 ~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~  120 (231)
T COG3840          67 PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA  120 (231)
T ss_pred             CcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh
Confidence            3222  5667899999999999988 456542         4556666667765

>PRK08356 hypothetical protein; Provisional

Probab=99.14  E-value=2.7e-11  Score=96.02  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             cEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS  138 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~  138 (166)
                      .+|+|+||+||||||+. .+.. . .|. .++++++.++.++.++.+|+|++...|..++..+.|++|+.+.+|.||++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~-g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-K-GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-C-CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            47899999999999999 5554 3 354 88899988888888999999999999999888999999999999999987

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.14  E-value=3.9e-11  Score=112.14  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      |-..+++|+|.+.   ..++.++++.++.||     .++|+|+||||||||+ |+.++..            |..|+  +
T Consensus       470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge-----~vaIvG~SGsGKSTL~KLL~gly~------------p~~G~I~~  532 (709)
T COG2274         470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGE-----KVAIVGRSGSGKSTLLKLLLGLYK------------PQQGRILL  532 (709)
T ss_pred             ceEEEEEEEEEeCCCCcchhhceeEEeCCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEE
Confidence            4678889998885   358889999998888     9999999999999999 8888887            99998  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHHh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGRN  147 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~ile  147 (166)
                      ||.|..-++...+++.   +.++.++..+++.+| ..|-+..+.+++++
T Consensus       533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~  581 (709)
T COG2274         533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIE  581 (709)
T ss_pred             CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHH
Confidence            9998888888888874   578899999999999 45555444444444

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.13  E-value=7.3e-11  Score=109.97  Aligned_cols=106  Identities=12%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      ..++++|++.+.    ..++.++++.+++|+     .++|+||||||||||+ ++.++.+            |.+|+  +
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge-----~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i  540 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE-----VVALVGPSGSGKSTVAALLQNLYQ------------PTGGQVLL  540 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEE
Confidence            477888888763    357889999999888     8999999999999999 8888776            88897  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      ||++..-++...+.+.   +.|+.++..+++.+| .||.+   .+++.++++.++++
T Consensus       541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~  597 (711)
T TIGR00958       541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH  597 (711)
T ss_pred             CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence            8888766676666654   457778888999999 67754   46677777776654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.13  E-value=8.1e-11  Score=106.65  Aligned_cols=107  Identities=19%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      -.++++|+|.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++.+            |..|++  +
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~-----~~aIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~  403 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGK-----TVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLD  403 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCceEEEC
Confidence            477778887763   457889999998888     8999999999999999 8888775            888974  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~  153 (166)
                      |.++.-++.+.+.+.   +.|+.++..+++.+| .+|.    +.++++++++.+++++
T Consensus       404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~  461 (582)
T PRK11176        404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD  461 (582)
T ss_pred             CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHH
Confidence            888766777776654   466778888999999 5663    4567888888777654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.12  E-value=3.5e-11  Score=96.70  Aligned_cols=107  Identities=12%  Similarity=0.088  Sum_probs=77.3

Q ss_pred             ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      +..+++|++.+  ..+++.++||.+++||     ++.|+||||+||||++ ||-....            |..|+  ++|
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Ge-----f~fl~GpSGAGKSTllkLi~~~e~------------pt~G~i~~~~   63 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGE-----FVFLTGPSGAGKSTLLKLIYGEER------------PTRGKILVNG   63 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCce-----EEEEECCCCCCHHHHHHHHHhhhc------------CCCceEEECC
Confidence            34677888777  4668999999999998     9999999999999999 7766554            77786  477


Q ss_pred             cceeecCHHHHHH-------HHHcCCccceeeehhh------hcCCChHHHH----HHHhhccCCh
Q psy18088        105 KAYHFVTRADMEE-------RIAAGEFLEHAEFAAN------LYGTSQCGRQ----NGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn------~yG~~~~~I~----~ile~v~L~~  153 (166)
                      .+..-++..++..       .+|.-.++...++.+|      ..|.+.++++    ++++.|+|..
T Consensus        64 ~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~  129 (223)
T COG2884          64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH  129 (223)
T ss_pred             eecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch
Confidence            6655455444332       3677888999999888      2466655444    4555666653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.11  E-value=9.2e-11  Score=108.85  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +-.++++|++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|+  +
T Consensus       476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge-----~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~i  538 (710)
T TIGR03796       476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQ-----RVALVGGSGSGKSTIAKLVAGLYQ------------PWSGEILF  538 (710)
T ss_pred             CeEEEEEEEEecCCCCCCcccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEE
Confidence            3477889998774   458899999999888     8999999999999999 8877765            88897  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~  153 (166)
                      ||++..-++..++++.   +.|+.++..+++.+|. +|.   +.+++.++++.+++++
T Consensus       539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~  596 (710)
T TIGR03796       539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD  596 (710)
T ss_pred             CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence            8988776777777665   3567788889999993 553   4567778887776653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.11  E-value=7.7e-11  Score=109.41  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      -.++++|++.+.  ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|+  +||
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~-----~vaIvG~SGsGKSTLlklL~gl~~------------p~~G~I~idg  535 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNS-----KTTIVGMSGSGKSTLAKLLVGFFQ------------ARSGEILLNG  535 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCC-----EEEEECCCCCCHHHHHHHHhccCC------------CCCcEEEECC
Confidence            467788887763  467889999999888     8999999999999999 8888776            88998  489


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcC----CChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~~  153 (166)
                      ++..-++.+++++.   +.|+.++..+++.+| .+|    .+.+++.++++..++++
T Consensus       536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~  592 (708)
T TIGR01193       536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD  592 (708)
T ss_pred             EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH
Confidence            88777777777764   467788888999999 456    23466777777666553

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.11  E-value=3e-11  Score=97.87  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             cceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCH
Q psy18088         37 NYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTR  112 (166)
Q Consensus        37 ~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~  112 (166)
                      +|+-. ..++.+.|..+.+||     +++++||||||||||+ +++++-.            |..|++  +|..   ++.
T Consensus        12 ~y~g~~~~~le~vsL~ia~ge-----~vv~lGpSGcGKTTLLnl~AGf~~------------P~~G~i~l~~r~---i~g   71 (259)
T COG4525          12 SYEGKPRSALEDVSLTIASGE-----LVVVLGPSGCGKTTLLNLIAGFVT------------PSRGSIQLNGRR---IEG   71 (259)
T ss_pred             ecCCcchhhhhccceeecCCC-----EEEEEcCCCccHHHHHHHHhcCcC------------cccceEEECCEe---ccC
Confidence            44433 457888999999888     8999999999999999 9999876            777764  4443   333


Q ss_pred             HH--HHHHHHcCCccceeeehhh-hcC-----CChHHH----HHHHhhccCChhH
Q psy18088        113 AD--MEERIAAGEFLEHAEFAAN-LYG-----TSQCGR----QNGRNYLIFNTLA  155 (166)
Q Consensus       113 ~~--f~~~~~~~~fle~~~~~gn-~yG-----~~~~~I----~~ile~v~L~~~~  155 (166)
                      +.  -.-.+|+..+++|.+..+| .||     +++..-    .+.+..|+|++..
T Consensus        72 PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~  126 (259)
T COG4525          72 PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE  126 (259)
T ss_pred             CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc
Confidence            22  2334688899999999998 444     555333    3333456666544

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.10  E-value=1.5e-10  Score=98.64  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      .++++|++.+.      +.++++.|+.|++|+     +++|+|.||+|||||+ +++.+..            |.+|.  
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge-----I~GIIG~SGAGKSTLiR~iN~Le~------------PtsG~v~   64 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGE-----IFGIIGYSGAGKSTLLRLINLLER------------PTSGSVF   64 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCc-----EEEEEcCCCCcHHHHHHHHhccCC------------CCCceEE
Confidence            45677776664      467889999999999     8999999999999999 9999887            99997  


Q ss_pred             cCCcceeecCHHHHHHH-------HHcCCccceeeehhh-h-----cCCChHHH----HHHHhhccCChh
Q psy18088        102 VDGKAYHFVTRADMEER-------IAAGEFLEHAEFAAN-L-----YGTSQCGR----QNGRNYLIFNTL  154 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~-------~~~~~fle~~~~~gn-~-----yG~~~~~I----~~ile~v~L~~~  154 (166)
                      ++|.+....+.....+.       +|.-.++...++.+| .     -|.+++++    .+.++.|+|.+.
T Consensus        65 v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk  134 (339)
T COG1135          65 VDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK  134 (339)
T ss_pred             EcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh
Confidence            58988777777776654       455567777888888 2     45666544    445667888744

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.10  E-value=3.1e-11  Score=102.00  Aligned_cols=107  Identities=20%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      .+..++++.+.  ..++.++|+.+++|+     +++|+||+|||||||+ ++.+.-.            |..|+  ++|.
T Consensus         5 i~~~~l~k~~~~~~~~l~~vs~~i~~Ge-----i~gllG~NGAGKTTllk~l~gl~~------------p~~G~i~i~G~   67 (293)
T COG1131           5 IEVRNLTKKYGGDKTALDGVSFEVEPGE-----IFGLLGPNGAGKTTLLKILAGLLK------------PTSGEILVLGY   67 (293)
T ss_pred             eeecceEEEeCCCCEEEeceeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEEcCE
Confidence            44567888887  578999999999998     8999999999999999 7777665            78887  4776


Q ss_pred             ceeecCHHH----HHHHHHcCCccceeeehhh------hcCCC----hHHHHHHHhhccCChhH
Q psy18088        106 AYHFVTRAD----MEERIAAGEFLEHAEFAAN------LYGTS----QCGRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~----f~~~~~~~~fle~~~~~gn------~yG~~----~~~I~~ile~v~L~~~~  155 (166)
                      +..-- ..+    +..+.+...+.++.+..++      .||.+    .+.++++++.++|.+..
T Consensus        68 ~~~~~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~  130 (293)
T COG1131          68 DVVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA  130 (293)
T ss_pred             eCccC-HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh
Confidence            54221 122    3335677778888888766      58876    35788999999998743

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.09  E-value=1.3e-10  Score=115.84  Aligned_cols=118  Identities=15%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccc-------------------
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDR-------------------   85 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~-------------------   85 (166)
                      -.++++|++.+.    .+++.++++.+++|+     .++|+||||||||||+ |+.++.+.                   
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~-----~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKK-----TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCC-----EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccc
Confidence            477888887772    468999999999888     8999999999999999 88775541                   


Q ss_pred             -----------------------eeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcC
Q psy18088         86 -----------------------FGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG  136 (166)
Q Consensus        86 -----------------------f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG  136 (166)
                                             -....+-+|+.|.+|++  ||++..-++...++..   +.|..++..+++.+| .||
T Consensus      1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g 1319 (1466)
T PTZ00265       1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG 1319 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC
Confidence                                   01122345677788984  9998877787777764   477889999999999 688


Q ss_pred             C---ChHHHHHHHhhccCC
Q psy18088        137 T---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       137 ~---~~~~I~~ile~v~L~  152 (166)
                      .   +.++++++++...+.
T Consensus      1320 ~~~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265       1320 KEDATREDVKRACKFAAID 1338 (1466)
T ss_pred             CCCCCHHHHHHHHHHcCCH
Confidence            4   446677777765554

>KOG0055|consensus

Probab=99.08  E-value=8.2e-11  Score=113.96  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             CceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      |-.++.+|++.+    .++++.+.++.|+.|+     .++|||||||||||++ |++++.+            |..|.  
T Consensus       986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq-----TvALVG~SGsGKSTvI~LLeRfYd------------p~~G~V~ 1048 (1228)
T KOG0055|consen  986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ-----TVALVGPSGSGKSTVISLLERFYD------------PDAGKVK 1048 (1228)
T ss_pred             eEEEEeeeEeeCCCCCCchhhcCCcEEecCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEE
Confidence            456777877777    3778889999998777     8999999999999999 9999998            98997  


Q ss_pred             cCCcceeecCHHHHHH---HHHcCCccceeeehhh-hcCCCh---HHHHHHHh
Q psy18088        102 VDGKAYHFVTRADMEE---RIAAGEFLEHAEFAAN-LYGTSQ---CGRQNGRN  147 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn-~yG~~~---~~I~~ile  147 (166)
                      +||.+..-++....++   ++.|..-+...++.+| .||...   ++|.++++
T Consensus      1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak 1101 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAK 1101 (1228)
T ss_pred             ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHH
Confidence            5898877777766665   3577778888999999 899433   44444444

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.08  E-value=1.9e-10  Score=96.00  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      ++.+++++.+. ..++.++||.+.+|+     +++|+||+|||||||+ .+.+.-.            |..|++  +|++
T Consensus         3 L~~~~ls~~y~~~~il~~ls~~i~~G~-----i~~iiGpNG~GKSTLLk~l~g~l~------------p~~G~V~l~g~~   65 (258)
T COG1120           3 LEVENLSFGYGGKPILDDLSFSIPKGE-----ITGILGPNGSGKSTLLKCLAGLLK------------PKSGEVLLDGKD   65 (258)
T ss_pred             eEEEEEEEEECCeeEEecceEEecCCc-----EEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCCc
Confidence            55677787774 678889999999888     8999999999999999 7777553            888974  8887


Q ss_pred             eeecCHHHHHHH----HHcCCccceeeehh----------hhcCC-Ch---HHHHHHHhhccCChhHHhhCC
Q psy18088        107 YHFVTRADMEER----IAAGEFLEHAEFAA----------NLYGT-SQ---CGRQNGRNYLIFNTLAAKCLP  160 (166)
Q Consensus       107 y~fvs~~~f~~~----~~~~~fle~~~~~g----------n~yG~-~~---~~I~~ile~v~L~~~~~~~l~  160 (166)
                      .+-.+..++.+.    .|.....+..++.+          +.++. +.   +.++++++.+++...+-+.+.
T Consensus        66 i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~  137 (258)
T COG1120          66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD  137 (258)
T ss_pred             hhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc
Confidence            766666666553    23333333333322          12332 22   246666777777766555443

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.08  E-value=1.6e-10  Score=105.17  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      ..++++|++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++.+            |.+|+  ++
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~-----~~aivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i~  400 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGE-----KVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLN  400 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence            477888888763   357889999999888     8999999999999999 8887765            88897  48


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      |++..-++.+.+.+.   +.+..++..+++.+| .||.   +.+++.++++.+++++
T Consensus       401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~  457 (574)
T PRK11160        401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEK  457 (574)
T ss_pred             CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHH
Confidence            888766777776653   356677778899999 4653   4567788888777664

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.06  E-value=2.4e-10  Score=102.53  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      -.++++|++.+.   ..++.+.++.+++|+     .++|+||||||||||+ ++.++.+            |..|++  +
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~I~~~  382 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGE-----RVALVGPSGAGKSTLLNLLLGFVD------------PTEGSIAVN  382 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEEC
Confidence            467788887763   257889999998888     8999999999999999 8887775            888985  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~  152 (166)
                      |.+..-++.+++.+.   +.|..++..+++.+| .+|.   +.+++.++++.+++.
T Consensus       383 g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~  438 (529)
T TIGR02857       383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLD  438 (529)
T ss_pred             CEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcH
Confidence            888776777776664   356677778899999 4553   346677777776665

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.06  E-value=1.5e-10  Score=107.18  Aligned_cols=107  Identities=17%  Similarity=0.163  Sum_probs=83.4

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      -.++++|++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|+  +|
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~-----~iaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~id  525 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGE-----KVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLD  525 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence            467888887763   357889999999888     8999999999999999 8888776            88898  48


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      |++..-++...+++.   +.|+.++..+++.+| .+|-   +.+++.++++.+++.+
T Consensus       526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~  582 (694)
T TIGR03375       526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE  582 (694)
T ss_pred             CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHH
Confidence            888766777776654   466778888999999 4563   4567777777766553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>KOG0055|consensus

Probab=99.05  E-value=1.1e-10  Score=113.20  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             hcCceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088         27 NAGITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE  101 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge  101 (166)
                      -.|..++++|.+.+.    +.++.+.++.|+.|+     .++|+|||||||||++ |+.++.+            |..|+
T Consensus       347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~-----~valVG~SGsGKST~i~LL~Rfyd------------P~~G~  409 (1228)
T KOG0055|consen  347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ-----TVALVGPSGSGKSTLIQLLARFYD------------PTSGE  409 (1228)
T ss_pred             cccceEEEEEEecCCCCCcchhhCCeEEEeCCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCce
Confidence            345788889888883    678889999999888     8999999999999999 9999998            99998


Q ss_pred             --cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCCh---HHHHHHHh
Q psy18088        102 --VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQ---CGRQNGRN  147 (166)
Q Consensus       102 --~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~---~~I~~ile  147 (166)
                        +||.+...+..+..+..   +.|...+...++.+| .||.+.   ++++++.+
T Consensus       410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k  464 (1228)
T KOG0055|consen  410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK  464 (1228)
T ss_pred             EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence              48988766666655542   455557888899999 799865   44555543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=5.5e-11  Score=102.99  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             ceEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      +++++++++.+ . ..++.++++.+.+|+     +++|+||||||||||+ +|.++..            |.+|++  +|
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~llG~sGsGKSTLLr~iaGl~~------------p~~G~I~~~g   65 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGE-----FIVLVGPSGCGKSTLLRMVAGLER------------ITSGEIWIGG   65 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECC
Confidence            35677888776 3 457888999998888     8999999999999999 8888654            777763  66


Q ss_pred             cceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~  153 (166)
                      .+....+..+  +...+|...+.++.++.+| .||.     +.    ..++++++.++|.+
T Consensus        66 ~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~  126 (356)
T PRK11650         66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP  126 (356)
T ss_pred             EECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence            6543223221  2223455566667788777 3442     32    33556677777754

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.05  E-value=2.6e-10  Score=103.78  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      -.+++++++.+.  ..++.++++.+++|+     .++|+|+||||||||+ ++.++..            |..|++  ||
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge-----~iaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg  402 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRG-----FVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDG  402 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECC
Confidence            367778887663  457889999999888     8999999999999999 8877765            888874  88


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC--ChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT--SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~--~~~~I~~ile~v~L~~  153 (166)
                      .+..-++...+.+.   +.|+.++..+++.+| .+|-  +.+++.++++.+++.+
T Consensus       403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~  457 (592)
T PRK10790        403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAE  457 (592)
T ss_pred             EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHH
Confidence            88777777777764   466777788899999 4553  4567888888777664

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.04  E-value=4.7e-11  Score=103.27  Aligned_cols=107  Identities=17%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~   68 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQGT-----MVTLLGPSGCGKTTVLRLVAGLEK------------PTEGQIFIDGE   68 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCE
Confidence            577888888774 456888999999888     8999999999999999 8888765            777763  665


Q ss_pred             ceeecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088        106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~  153 (166)
                      +..-.+..  .+...+|...+.++.++.+| .||     .++    +.++++++.+++..
T Consensus        69 ~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~  128 (351)
T PRK11432         69 DVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG  128 (351)
T ss_pred             ECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch
Confidence            43222211  12223455566777788777 344     333    34455666677653

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.04  E-value=4.8e-11  Score=103.28  Aligned_cols=107  Identities=12%  Similarity=0.100  Sum_probs=73.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      +++++++++.+. ..++.+.++.+.+|+     +++|+||||||||||+ +|+++..            |..|+  ++|+
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~GpsGsGKSTLLr~iaGl~~------------p~~G~I~i~g~   66 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTALKDISLSVKKGE-----FVCLLGPSGCGKTTLLRIIAGLER------------QTAGTIYQGGR   66 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHCCCC------------CCceEEEECCE
Confidence            466778888774 456778899998888     8999999999999999 8888764            77776  3665


Q ss_pred             ceeecCHHH--HHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088        106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~  153 (166)
                      +........  +...+|...+.++.++.+| .||     .++    ..++++++.++|.+
T Consensus        67 ~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~  126 (353)
T TIGR03265        67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG  126 (353)
T ss_pred             ECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc
Confidence            532222111  2223455667777888887 344     232    34666777777764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.04  E-value=8.2e-11  Score=100.22  Aligned_cols=107  Identities=15%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc-
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK-  105 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~-  105 (166)
                      +.+.+++|.+. ..++.++++.|+.||     .++|.||||||||||+ +|+++..            |..|.+  +|. 
T Consensus         3 i~i~~~~~~~~~~~a~~di~l~i~~Ge-----~vaLlGpSGaGKsTlLRiIAGLe~------------p~~G~I~~~~~~   65 (345)
T COG1118           3 IRINNVKKRFGAFGALDDISLDIKSGE-----LVALLGPSGAGKSTLLRIIAGLET------------PDAGRIRLNGRV   65 (345)
T ss_pred             eeehhhhhhcccccccccceeeecCCc-----EEEEECCCCCcHHHHHHHHhCcCC------------CCCceEEECCEe
Confidence            34556667774 667778899999888     8999999999999999 9999887            877863  665 


Q ss_pred             --ceeec--CHHHHHHHHHcCCccceeeehhh-hcCCCh-----------HHHHHHHhhccCChh
Q psy18088        106 --AYHFV--TRADMEERIAAGEFLEHAEFAAN-LYGTSQ-----------CGRQNGRNYLIFNTL  154 (166)
Q Consensus       106 --~y~fv--s~~~f~~~~~~~~fle~~~~~gn-~yG~~~-----------~~I~~ile~v~L~~~  154 (166)
                        |..-+  ....+...+|...++.+.++.+| .||...           ..+++.++.+.|+..
T Consensus        66 l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l  130 (345)
T COG1118          66 LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL  130 (345)
T ss_pred             ccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch
Confidence              32111  11223445677778889999999 788721           345555666666543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.03  E-value=3.3e-10  Score=97.11  Aligned_cols=97  Identities=19%  Similarity=0.358  Sum_probs=75.2

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH-
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE-  117 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~-  117 (166)
                      +--..+.++.|..||     +++|+|-||||||||+ +++++-+            |..|+  ++|.+..-++..+... 
T Consensus        41 vvGv~~~sl~v~~Ge-----IfViMGLSGSGKSTLvR~~NrLie------------pt~G~ilv~g~di~~~~~~~Lr~~  103 (386)
T COG4175          41 VVGVNDASLDVEEGE-----IFVIMGLSGSGKSTLVRLLNRLIE------------PTRGEILVDGKDIAKLSAAELREL  103 (386)
T ss_pred             EEeeccceeeecCCe-----EEEEEecCCCCHHHHHHHHhccCC------------CCCceEEECCcchhcCCHHHHHHH
Confidence            344557788999888     7999999999999999 9999887            99998  4888887778777554 


Q ss_pred             -------HHHcCCccceeeehhh-hcCCC-----hH----HHHHHHhhccCChhH
Q psy18088        118 -------RIAAGEFLEHAEFAAN-LYGTS-----QC----GRQNGRNYLIFNTLA  155 (166)
Q Consensus       118 -------~~~~~~fle~~~~~gn-~yG~~-----~~----~I~~ile~v~L~~~~  155 (166)
                             .+|+-.+++|.++.+| .||+.     ++    ...++++.|+|..-+
T Consensus       104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~  158 (386)
T COG4175         104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA  158 (386)
T ss_pred             HhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence                   3788899999999998 67754     32    344555677766443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.02  E-value=3.6e-10  Score=102.81  Aligned_cols=107  Identities=17%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      ..+++++++.+.  ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|+  ++|
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~-----~v~IvG~sGsGKSTLl~lL~gl~~------------p~~G~I~i~g  396 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQ-----TVAIVGPTGAGKSTLINLLQRVFD------------PQSGRILIDG  396 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECC
Confidence            467778887763  457889999999888     8999999999999999 7777665            88887  488


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      .+..-++.+.+.+.   +.++.++..+++.+| .+|.   +.+++.++++.+++++
T Consensus       397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~  452 (588)
T PRK13657        397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHD  452 (588)
T ss_pred             EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHH
Confidence            88777777777664   356677778999999 5563   3466777777666553

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.02  E-value=4.1e-10  Score=101.61  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      -.++++|++.+.   ..++.+.++.+++|+     .++|+||||+|||||+ ++.++..            |..|++  +
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~-----~v~IvG~sGsGKSTLl~lL~gl~~------------~~~G~I~i~  392 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGE-----TVALVGRSGSGKSTLVNLIPRFYE------------PDSGQILLD  392 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEEC
Confidence            466778887652   347889999998888     8999999999999999 8877765            888974  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcC----CChHHHHHHHhhccCChh
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~~~  154 (166)
                      |+++.-++.+++.+.   +.|+.++..+++.+| .+|    .+.+++.++++.+++++.
T Consensus       393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~  451 (571)
T TIGR02203       393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF  451 (571)
T ss_pred             CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHH
Confidence            888766677776553   467788889999999 455    345678888887776643

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=3.3e-10  Score=102.18  Aligned_cols=108  Identities=15%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ..++.+|++++.   .+++.++++++++||     -|+|+|+||||||||+ |+.+..+            |..|++  +
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE-----kvAIlG~SGsGKSTllqLl~~~~~------------~~~G~i~~~  398 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGE-----KVAILGRSGSGKSTLLQLLAGAWD------------PQQGSITLN  398 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCC-----eEEEECCCCCCHHHHHHHHHhccC------------CCCCeeeEC
Confidence            456778887773   568999999999999     7999999999999999 8888776            889985  7


Q ss_pred             CcceeecCHHHHHH---HHHcCCccceeeehhhh-cCCCh---HHHHHHHhhccCChh
Q psy18088        104 GKAYHFVTRADMEE---RIAAGEFLEHAEFAANL-YGTSQ---CGRQNGRNYLIFNTL  154 (166)
Q Consensus       104 G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn~-yG~~~---~~I~~ile~v~L~~~  154 (166)
                      |.+...++.....+   +..|...+..+++.+|. .+.+.   +++.++++.++|++.
T Consensus       399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l  456 (573)
T COG4987         399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL  456 (573)
T ss_pred             CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHH
Confidence            87766666654443   24666777788999993 44444   666667777777643

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.01  E-value=3.6e-10  Score=93.38  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      ++..+.+++.|. ..++.+.|+.|++||     +++||||+|+||||++ +|.++..            |+.|++  +|.
T Consensus         4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Ge-----i~~LIGPNGAGKTTlfNlitG~~~------------P~~G~v~~~G~   66 (250)
T COG0411           4 LLEVRGLSKRFGGLTAVNDVSLEVRPGE-----IVGLIGPNGAGKTTLFNLITGFYK------------PSSGTVIFRGR   66 (250)
T ss_pred             eeeeccceeecCCEEEEeceeEEEcCCe-----EEEEECCCCCCceeeeeeeccccc------------CCCceEEECCc
Confidence            455668889995 778889999999999     8999999999999999 9998775            888874  787


Q ss_pred             ceeecCHHHHHHH-----HHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEER-----IAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn  133 (166)
                      ++...+..+..++     +|.-..+...++.+|
T Consensus        67 ~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN   99 (250)
T COG0411          67 DITGLPPHRIARLGIARTFQITRLFPGLTVLEN   99 (250)
T ss_pred             ccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence            7766666665443     555566666666665

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.01  E-value=4.9e-10  Score=96.77  Aligned_cols=106  Identities=13%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      ++++++++.+.     ..++.++|+.+++|+     +++|+||||||||||+ +|.++..            |..|++  
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge-----i~gIiG~sGaGKSTLlr~I~gl~~------------p~~G~I~i   64 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQ-----IYGVIGASGAGKSTLIRCVNLLER------------PTSGSVIV   64 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEE
Confidence            56677877763     357889999999888     8999999999999999 8888765            777864  


Q ss_pred             CCcceeecCHHHHHH-------HHHcCCccceeeehhh-h-----cCCChH----HHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAAN-L-----YGTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn-~-----yG~~~~----~I~~ile~v~L~~  153 (166)
                      +|.+..-.+..++..       .+|...++...++.+| .     .|.++.    .+.++++.++|.+
T Consensus        65 ~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~  132 (343)
T TIGR02314        65 DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD  132 (343)
T ss_pred             CCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            776644334333321       2344456666677776 2     234433    3455666777764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.00  E-value=1.1e-10  Score=101.86  Aligned_cols=107  Identities=15%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ +|.++..            |..|++  +|.
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~LlGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~   76 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINNGE-----FLTLLGPSGCGKTTVLRLIAGFET------------PDSGRIMLDGQ   76 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCE
Confidence            567888888774 456778899998888     8999999999999999 8888664            667763  665


Q ss_pred             ceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----ChH----HHHHHHhhccCCh
Q psy18088        106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~~----~I~~ile~v~L~~  153 (166)
                      +....+...  +...+|...++++.++.+| .||.     +..    .++++++.++|.+
T Consensus        77 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~  136 (375)
T PRK09452         77 DITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE  136 (375)
T ss_pred             ECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch
Confidence            432222211  2223455567777788887 3443     332    3556666777764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.99  E-value=4.6e-10  Score=89.21  Aligned_cols=93  Identities=14%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER  118 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~  118 (166)
                      ...+.+.|+.|++||     +++|.||||||||||+ .++.+-.            |.+|++  .|++|...+.+.|++.
T Consensus        16 a~il~~isl~v~~Ge-----~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~pea~Rq~   78 (223)
T COG4619          16 AKILNNISLSVRAGE-----FIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLKPEAYRQQ   78 (223)
T ss_pred             CeeecceeeeecCCc-----eEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccChHHHHHH
Confidence            567788999999999     9999999999999999 6666654            889984  8889888888888764


Q ss_pred             H----HcCCccceeeehhhhc--------CCChHHHHHHHhhccCC
Q psy18088        119 I----AAGEFLEHAEFAANLY--------GTSQCGRQNGRNYLIFN  152 (166)
Q Consensus       119 ~----~~~~fle~~~~~gn~y--------G~~~~~I~~ile~v~L~  152 (166)
                      +    |... +.-.++.+|+.        -..++.....++.+++.
T Consensus        79 VsY~~Q~pa-Lfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~  123 (223)
T COG4619          79 VSYCAQTPA-LFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP  123 (223)
T ss_pred             HHHHHcCcc-ccccchhhccccchHHhccCCChHHHHHHHHHcCCc
Confidence            2    3333 33356666631        12334445555555544

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.1e-10  Score=101.52  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=80.2

Q ss_pred             eeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceee
Q psy18088         35 LLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHF  109 (166)
Q Consensus        35 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~f  109 (166)
                      ++++.+  ..+++.+.++.+++|+     .++|+||||||||||+ ++.++-.            |..|+  +||.+...
T Consensus       325 ~l~~~y~~g~~~l~~l~~t~~~g~-----~talvG~SGaGKSTLl~lL~G~~~------------~~~G~I~vng~~l~~  387 (559)
T COG4988         325 NLSFRYPDGKPALSDLNLTIKAGQ-----LTALVGASGAGKSTLLNLLLGFLA------------PTQGEIRVNGIDLRD  387 (559)
T ss_pred             ceEEecCCCCcccCCceeEecCCc-----EEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCccccc
Confidence            556555  3478889999998888     8999999999999999 7777654            78898  48888888


Q ss_pred             cCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        110 VTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       110 vs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      ++.+.+.+.   +.+..++..+++.+| ..|.   +.+++.++++..+|.+
T Consensus       388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~  438 (559)
T COG4988         388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE  438 (559)
T ss_pred             cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHH
Confidence            888888874   678899999999999 2343   3577778777655543

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.99  E-value=6.1e-10  Score=100.71  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      -.++++|++.+.    ..++.++++.+++||     .++|+||||||||||+ ++.++..            |.+|+  +
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge-----~i~IvG~sGsGKSTLlklL~gl~~------------p~~G~I~i  399 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGE-----TVALVGPSGAGKSTLFQLLLRFYD------------PQSGRILL  399 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEE
Confidence            466778877653    347889999999888     8999999999999999 7777665            88887  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~  152 (166)
                      +|.+..-++...+.+.   ..++.++..+++.+| .+|.   +.+++.++++.+++.
T Consensus       400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~  456 (576)
T TIGR02204       400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAH  456 (576)
T ss_pred             CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcH
Confidence            8887666666666553   356677888899999 5554   345677777776664

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.99  E-value=8.8e-11  Score=100.16  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccce
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH  127 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~  127 (166)
                      ++++|+|+||+|||||+|.  |...+...        +...+++|||+|+.+|++|++|||++..++.+.+..+.|+++
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~   81 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD   81 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence            3458999999999999999  65554431        556778899999999999999999997777666555555554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=6.2e-10  Score=92.00  Aligned_cols=58  Identities=12%  Similarity=0.084  Sum_probs=45.8

Q ss_pred             HHHHHhcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         22 SYIRENAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ||--+.+.++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575          3 EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGK-----VTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             cccCCCCceEEEeeEEEEECCEEEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            44444445677888887663 467889999999888     8999999999999999 7777643

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.96  E-value=9.4e-10  Score=102.06  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=82.6

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +-.++++|++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|+  +
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~-----~vaivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i  516 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGE-----FIGIVGPSGSGKSTLTKLLQRLYT------------PQHGQVLV  516 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEE
Confidence            3477888888763   447889999999888     8999999999999999 8888765            88897  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~  152 (166)
                      ||++..-++.+++.+.   +.++.++..+++.+| .+|-   +.+++.++++.++++
T Consensus       517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~  573 (694)
T TIGR01846       517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAH  573 (694)
T ss_pred             CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChH
Confidence            8988777777777664   356677778899998 4553   456677777766654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.95  E-value=1.9e-10  Score=99.96  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCC--Ccc-
Q psy18088         28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRP--GEV-  102 (166)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~--ge~-  102 (166)
                      |+-++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|+++..            |..  |++ 
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~~~G~i~   65 (362)
T TIGR03258         3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGE-----LLALIGKSGCGKTTLLRAIAGFVK------------AAGLTGRIA   65 (362)
T ss_pred             ceEEEEEEEEEEECCeEEEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCCCEEEE
Confidence            34567778888774 457888999998888     8999999999999999 8887654            666  653 


Q ss_pred             -CCcceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCChh
Q psy18088        103 -DGKAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       103 -~G~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~~  154 (166)
                       +|.+....+..  .+...+|...+.++.++.+| .|     +.+.    ..++++++.++|++.
T Consensus        66 ~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~  130 (362)
T TIGR03258        66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA  130 (362)
T ss_pred             ECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch
Confidence             55543211111  11223455556677777777 23     3343    245666777777643

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.95  E-value=2.6e-10  Score=91.10  Aligned_cols=49  Identities=18%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.   ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGE-----MVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667776663   347888999998888     8999999999999999 7777643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.94  E-value=6.4e-10  Score=90.17  Aligned_cols=49  Identities=16%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGE-----FVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence            34556666553  457888999998888     8999999999999999 7777543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.94  E-value=3.2e-10  Score=98.13  Aligned_cols=106  Identities=11%  Similarity=0.100  Sum_probs=68.8

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.++..            |.+|++  +|.+
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~   65 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSGQ-----MVALLGPSGSGKTTLLRIIAGLEH------------QTSGHIRFHGTD   65 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence            45667777763 457788999998888     8999999999999999 8887654            666763  6654


Q ss_pred             eeecCHH--HHHHHHHcCCccceeeehhh-hcC---------CCh----HHHHHHHhhccCCh
Q psy18088        107 YHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG---------TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG---------~~~----~~I~~ile~v~L~~  153 (166)
                      ....+..  .+...+|...+.++.++.+| .|+         .+.    +.++++++.++|.+
T Consensus        66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~  128 (353)
T PRK10851         66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH  128 (353)
T ss_pred             CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch
Confidence            3222211  12223455556666777777 333         222    24556666777753

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.94  E-value=1.3e-09  Score=93.85  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=67.5

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      ++++++++.+.     ..++.++|+.+++|+     +++|+||||||||||+ ++.+...            |.+|++  
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Ge-----i~~iiG~nGsGKSTLlk~L~Gl~~------------p~~G~I~~   64 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGE-----IFGVIGASGAGKSTLIRCINLLER------------PTSGRVLV   64 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEE
Confidence            45667777664     457889999999888     8999999999999999 7777653            667763  


Q ss_pred             CCcceeecCHHHHHH-------HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~  153 (166)
                      +|.+..-.+..+...       +.+...++...++.+|.      +|.+.    +.+.++++.++|.+
T Consensus        65 ~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~  132 (343)
T PRK11153         65 DGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD  132 (343)
T ss_pred             CCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            665543333222211       12333444445666651      34443    23455666777764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.93  E-value=2.6e-10  Score=99.61  Aligned_cols=107  Identities=15%  Similarity=0.168  Sum_probs=71.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      ++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|+++..            |..|++  +|+
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~   81 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYKGE-----IFALLGASGCGKSTLLRMLAGFEQ------------PTAGQIMLDGV   81 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCE
Confidence            577788887774 456778899998888     8999999999999999 8888764            666753  555


Q ss_pred             ceeecCHH--HHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088        106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~  153 (166)
                      +.......  .+...+|...++++.++.+| .||.     +.    ..++++++.+++.+
T Consensus        82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~  141 (377)
T PRK11607         82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE  141 (377)
T ss_pred             ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            42211111  12223566677888888888 4442     32    23455666677653

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.93  E-value=1.8e-09  Score=98.11  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ...++++++.+.   ..++.+.++.+++|+     .++|+||||||||||+ ++.++..            |.+|++  +
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~-----~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~i~~~  375 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQ-----MLGICGPTGSGKSTLLSLIQRHFD------------VSEGDIRFH  375 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEEC
Confidence            356777776653   357889999998888     8999999999999999 8877665            888874  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~  152 (166)
                      |++..-.+...+.+.   +.+..++..+++.+| .+|.   +.+++.++++.+++.
T Consensus       376 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~  431 (569)
T PRK10789        376 DIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVH  431 (569)
T ss_pred             CEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence            877655566665543   345566667889888 4553   345677777766654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.93  E-value=3.8e-10  Score=91.30  Aligned_cols=47  Identities=17%  Similarity=0.140  Sum_probs=37.8

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261           3 LRGLTKSFGGRTVLKGVDLDVRRGE-----ILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456666653 457888999999888     8999999999999999 7777543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.93  E-value=2.1e-09  Score=88.91  Aligned_cols=107  Identities=18%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-  102 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-  102 (166)
                      ++..++++..+.     ..++.++|+.+.+||     .++|+|+||||||||. ++.++..            |..|++ 
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge-----~lgivGeSGsGKSTL~r~l~Gl~~------------p~~G~I~   65 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGE-----TLGIVGESGSGKSTLARLLAGLEK------------PSSGSIL   65 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCC-----EEEEEcCCCCCHHHHHHHHhcccC------------CCCceEE
Confidence            455666666663     247889999999999     7999999999999999 7777665            666653 


Q ss_pred             -CCcc---------------eeecCHHHHHHHHHcCCccceeeehhh------hcCCC--hHHHHHHHhhccCChhHHhh
Q psy18088        103 -DGKA---------------YHFVTRADMEERIAAGEFLEHAEFAAN------LYGTS--QCGRQNGRNYLIFNTLAAKC  158 (166)
Q Consensus       103 -~G~~---------------y~fvs~~~f~~~~~~~~fle~~~~~gn------~yG~~--~~~I~~ile~v~L~~~~~~~  158 (166)
                       +|..               +.|.+..        +.+-++.++...      .-|.+  ...+.++++.|+|.+..+.+
T Consensus        66 ~~G~~~~~~~~~~~~~~~VQmVFQDp~--------~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R  137 (252)
T COG1124          66 LDGKPLAPKKRAKAFYRPVQMVFQDPY--------SSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR  137 (252)
T ss_pred             ECCcccCccccchhhccceeEEecCCc--------cccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc
Confidence             5532               2222222        223334443321      12333  34578888899999988877


Q ss_pred             CCc
Q psy18088        159 LPT  161 (166)
Q Consensus       159 l~~  161 (166)
                      .++
T Consensus       138 ~P~  140 (252)
T COG1124         138 RPH  140 (252)
T ss_pred             Cch
Confidence            653

>PLN03232 ABC transporter C family member; Provisional

Probab=98.92  E-value=1.5e-09  Score=108.49  Aligned_cols=108  Identities=13%  Similarity=0.005  Sum_probs=85.5

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +..++++|++.+.   ..++.++++.+++||     .++|+||||||||||+ ++.++.+            |.+|+  +
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge-----kvaIVG~SGSGKSTL~~lL~rl~~------------p~~G~I~I 1295 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSE-----KVGVVGRTGAGKSSMLNALFRIVE------------LEKGRIMI 1295 (1495)
T ss_pred             CcEEEEEEEEEECCCCCcccccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc------------CCCceEEE
Confidence            3477888887773   358999999999888     8999999999999999 7777766            88998  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cC--CChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YG--TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG--~~~~~I~~ile~v~L~~  153 (166)
                      ||++..-++...+++.   +.|+.++..+++.+|. ++  .+.+++.++++.+.+.+
T Consensus      1296 dG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232       1296 DDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKD 1352 (1495)
T ss_pred             CCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHH
Confidence            9998877787777764   4677888889999993 33  34567788887766643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.92  E-value=1.1e-09  Score=92.76  Aligned_cols=108  Identities=14%  Similarity=0.048  Sum_probs=71.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      +.+++++++.+. ..++.++|+.|++|+     +++|+||+|||||||+ ++.+.-.            |..|+  ++|.
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Ge-----i~gllGpNGaGKSTLl~~l~Gl~~------------p~~G~v~i~G~   69 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQRGE-----CFGLLGPNGAGKTTTLRMLLGLTH------------PDAGSISLCGE   69 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCE
Confidence            567888888874 568899999999888     8999999999999999 7777654            66776  3665


Q ss_pred             ceeecCHHHHH----HHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCChhH
Q psy18088        106 AYHFVTRADME----ERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~f~----~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~~~  155 (166)
                      +..-.. ....    .+.+...+.++.++.+|      .||.+..    .++++++.++|.+..
T Consensus        70 ~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  132 (306)
T PRK13537         70 PVPSRA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA  132 (306)
T ss_pred             ecccch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh
Confidence            532111 1121    12344445555566555      3565532    345666777776443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.91  E-value=8.2e-10  Score=87.80  Aligned_cols=105  Identities=15%  Similarity=0.045  Sum_probs=64.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      ++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...            |..|++  +|.+
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~v~~~g~~   64 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGE-----LVQIEGPNGAGKTSLLRILAGLAR------------PDAGEVLWQGEP   64 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence            45667777664 457889999999888     8999999999999999 7776543            666763  5544


Q ss_pred             eeecCHHHHHH----HHHcCCccceeeehhhh------cC-CChHHHHHHHhhccCCh
Q psy18088        107 YHFVTRADMEE----RIAAGEFLEHAEFAANL------YG-TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~~f~~----~~~~~~fle~~~~~gn~------yG-~~~~~I~~ile~v~L~~  153 (166)
                      ....+ ..+.+    ..+...+....+..+|.      ++ ...+.++++++.+++.+
T Consensus        65 ~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~  121 (204)
T PRK13538         65 IRRQR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG  121 (204)
T ss_pred             cccch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH
Confidence            22111 11111    11223344444555542      22 12345677777777753

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.91  E-value=6.1e-10  Score=90.07  Aligned_cols=46  Identities=17%  Similarity=0.123  Sum_probs=36.7

Q ss_pred             Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+.  ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256           3 VENLSKTYPNGKKALKDVSLSINPGE-----FVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EeeEEEecCCccEEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            445665553  457888999999888     8999999999999999 777654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.91  E-value=5.7e-10  Score=90.06  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      ++++++++.+. .    .++.++++.+++|+     +++|+||||||||||+ ++.+...            |..|++  
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~   64 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGE-----IFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLV   64 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEE
Confidence            44566666653 2    57888999998888     8999999999999999 7777543            666763  


Q ss_pred             CCcce
Q psy18088        103 DGKAY  107 (166)
Q Consensus       103 ~G~~y  107 (166)
                      +|.+.
T Consensus        65 ~g~~~   69 (233)
T cd03258          65 DGTDL   69 (233)
T ss_pred             CCEEc
Confidence            56543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.90  E-value=2.4e-09  Score=97.80  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=76.1

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      ..+++++++.+.  ..++.++++.+++|+     .++|+||||||||||+ ++.+...            |.+|++  +|
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g  396 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQ-----TVAIVGPTGAGKTTLINLLQRVYD------------PTVGQILIDG  396 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHccCCC------------CCCCEEEECC
Confidence            466788887763  357889999999888     8999999999999999 7777665            888874  78


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      .+..-++.+.+.+.   +.++.++..+++.+| .+|.+   .+++.++++.+.+.
T Consensus       397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~  451 (585)
T TIGR01192       397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH  451 (585)
T ss_pred             EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence            77655566655543   344556667888888 45533   45566666655544

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=1.6e-09  Score=88.58  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=41.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQE-----IVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCe-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            577788887774 567889999998888     8999999999999999 777764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.89  E-value=4.5e-10  Score=97.64  Aligned_cols=106  Identities=16%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      ++++++++.+. ..++.+.|+.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|.+
T Consensus         4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLL~~iaGl~~------------p~~G~I~~~g~~   66 (369)
T PRK11000          4 VTLRNVTKAYGDVVISKDINLDIHEGE-----FVVFVGPSGCGKSTLLRMIAGLED------------ITSGDLFIGEKR   66 (369)
T ss_pred             EEEEEEEEEeCCeEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence            55677777764 457888999998888     8999999999999999 8887654            666653  5544


Q ss_pred             eeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCCh
Q psy18088        107 YHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~  153 (166)
                      ....+..  .+....|...+.++.++.+| .|     +.+.    +.++++++.++|..
T Consensus        67 i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~  125 (369)
T PRK11000         67 MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH  125 (369)
T ss_pred             CCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence            3211111  11122344445555666666 23     3332    23556666777753

>PLN03130 ABC transporter C family member; Provisional

Probab=98.89  E-value=2.2e-09  Score=107.95  Aligned_cols=107  Identities=16%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      |-.++++|++.+.   ..++.++++.+++||     .|+|+|+||||||||+ ++.++.+            |.+|+  +
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge-----kVaIVGrSGSGKSTLl~lL~rl~~------------p~~G~I~I 1298 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSE-----KVGIVGRTGAGKSSMLNALFRIVE------------LERGRILI 1298 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEE
Confidence            4577888887763   358999999999888     8999999999999999 8887776            88898  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cC--CChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YG--TSQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG--~~~~~I~~ile~v~L~  152 (166)
                      ||++..-++..++++.   +.|+.++..+++.+|. ++  .+.+++.++++.+.+.
T Consensus      1299 DG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~ 1354 (1622)
T PLN03130       1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLK 1354 (1622)
T ss_pred             CCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcH
Confidence            9999887888887764   4677888889999993 43  2456778888766654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.89  E-value=1.3e-09  Score=93.98  Aligned_cols=108  Identities=11%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++||.|.+|+     +++|+||+|+|||||+ ++.++..            |..|++  +|.
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~Ge-----i~gLlGpNGaGKSTLl~~L~Gl~~------------p~~G~i~i~G~  103 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVASGE-----CFGLLGPNGAGKSTIARMILGMTS------------PDAGKITVLGV  103 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC------------CCceEEEECCE
Confidence            678889998885 568899999999888     8999999999999999 7777654            677763  665


Q ss_pred             ceeecCHHHHH----HHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCChhH
Q psy18088        106 AYHFVTRADME----ERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~f~----~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~~~  155 (166)
                      +..... ....    .+.+...+.++.++.+|      .||.+..    .++++++.++|.+..
T Consensus       104 ~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~  166 (340)
T PRK13536        104 PVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA  166 (340)
T ss_pred             ECCcch-HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh
Confidence            432111 1111    12344444455555554      3555432    344566677776443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.89  E-value=4.7e-10  Score=89.56  Aligned_cols=47  Identities=19%  Similarity=0.111  Sum_probs=37.0

Q ss_pred             Eeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.     ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~-----~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255           3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE-----FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EeeeEEEecCCCcceeEEeeeEEEEcCCC-----EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            445655542     357888999998888     8999999999999999 7777543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.89  E-value=1.8e-09  Score=98.01  Aligned_cols=106  Identities=21%  Similarity=0.122  Sum_probs=75.8

Q ss_pred             ceEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088         30 ITVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV  102 (166)
Q Consensus        30 ~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~  102 (166)
                      ..++++|++.+..      .++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|++
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~-----~~aivG~sGsGKSTl~~ll~g~~~------------p~~G~i  399 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGD-----IVFIVGENGCGKSTLAKLFCGLYI------------PQEGEI  399 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEE
Confidence            4678888877642      37888999998888     8999999999999999 8888766            888874


Q ss_pred             --CCcceeecCHHHHHHH---HHcCCccceeeehhhhcC-CChHHHHHHHhhccCC
Q psy18088        103 --DGKAYHFVTRADMEER---IAAGEFLEHAEFAANLYG-TSQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 --~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~yG-~~~~~I~~ile~v~L~  152 (166)
                        +|++....+..++...   +.++.++...++..|... .+.+++.++++.+++.
T Consensus       400 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~  455 (555)
T TIGR01194       400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIA  455 (555)
T ss_pred             EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCc
Confidence              8877665666655543   335556666666666321 2345566777766655

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.88  E-value=1.3e-09  Score=86.91  Aligned_cols=107  Identities=14%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...            |..|++  +|.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~   64 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGE-----ALVLTGPNGSGKTTLLRLIAGLLP------------PAAGTIKLDGG   64 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence            345667776653 457888999998888     8999999999999999 7777643            666653  554


Q ss_pred             ceeecC-HHHHHHHHHcCCccceeeehhhh------cCCChHHHHHHHhhccCCh
Q psy18088        106 AYHFVT-RADMEERIAAGEFLEHAEFAANL------YGTSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs-~~~f~~~~~~~~fle~~~~~gn~------yG~~~~~I~~ile~v~L~~  153 (166)
                      +..... ...+....++..+..+.+..+|.      ++.....+.++++.+++.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~  119 (207)
T PRK13539         65 DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP  119 (207)
T ss_pred             eCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH
Confidence            321000 00011111233333444555542      2333445777777777754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=1.5e-09  Score=89.62  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      ++++++|++.+  ..+++.++++.+.+||     +++|+||||+|||||+ .+++.-+            |..|++  +|
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE-----~VaiIG~SGaGKSTLLR~lngl~d------------~t~G~i~~~g   65 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGE-----MVAIIGPSGAGKSTLLRSLNGLVD------------PTSGEILFNG   65 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCc-----EEEEECCCCCcHHHHHHHHhcccC------------CCcceEEecc
Confidence            46778888888  3778889999999999     9999999999999999 7777666            777874  56


Q ss_pred             cceeecCHHHHH
Q psy18088        105 KAYHFVTRADME  116 (166)
Q Consensus       105 ~~y~fvs~~~f~  116 (166)
                      .+..-....+..
T Consensus        66 ~~i~~~~~k~lr   77 (258)
T COG3638          66 VQITKLKGKELR   77 (258)
T ss_pred             cchhccchHHHH
Confidence            544333433333

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=2.1e-09  Score=89.48  Aligned_cols=47  Identities=11%  Similarity=0.005  Sum_probs=39.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++++++.+. ..++.++++.|.+|+     +++|+||+|+|||||+ ++.+
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~-----~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEKGE-----ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcCCc-----EEEEECCCCCCHHHHHHHHhC
Confidence            456778887776 369999999999888     8999999999999999 5555

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.88  E-value=3.9e-09  Score=85.04  Aligned_cols=47  Identities=13%  Similarity=0.067  Sum_probs=38.0

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218           2 RAENLSKRYGKRKVVNGVSLSVKQGE-----IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eEEEEEEEeCCEEeeccceeEecCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            3456666653 457889999999888     8999999999999999 777754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG0056|consensus

Probab=98.88  E-value=9.7e-10  Score=98.97  Aligned_cols=96  Identities=16%  Similarity=0.239  Sum_probs=76.5

Q ss_pred             CceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         29 GITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        29 ~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      |-.++.+|++.+  ...++.|+||.+++|+     .++|+||||+||||++ |+-++.+            ..+|.  +|
T Consensus       536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGk-----tvAlVG~SGaGKSTimRlLfRffd------------v~sGsI~iD  598 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGK-----TVALVGPSGAGKSTIMRLLFRFFD------------VNSGSITID  598 (790)
T ss_pred             CeEEEEEeEEecCCCCceeecceEEecCCc-----EEEEECCCCCchhHHHHHHHHHhh------------ccCceEEEc
Confidence            567788888776  4788999999998777     8999999999999999 7777776            66675  69


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHH
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCG  141 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~  141 (166)
                      |+|...++....+.-   +.|+..+...++..| .||.+.++
T Consensus       599 gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~As  640 (790)
T KOG0056|consen  599 GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSAS  640 (790)
T ss_pred             CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCC
Confidence            999877777777764   467788888888877 68876533

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.88  E-value=1.5e-09  Score=98.13  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      ..+++++++.+.  ..++.++++.+++|+     .++|+||||||||||+ ++.+...            |.+|++  +|
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~-----~~aivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g  384 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGE-----LLFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDG  384 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECC
Confidence            467888887763  347889999999888     8999999999999999 8877665            888874  78


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhhhcCCChHHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~yG~~~~~I~~ile~v~L~~  153 (166)
                      ++....+...+.+.   +.++.++..+++..|.-..+.+.+++.++.++++.
T Consensus       385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~  436 (547)
T PRK10522        385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAH  436 (547)
T ss_pred             EECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCch
Confidence            77655555555543   23344455555555521233455666777666653

>PTZ00243 ABC transporter; Provisional

Probab=98.87  E-value=2.5e-09  Score=107.28  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      |-+++++|++.+.   ..++.++++.|++|+     .|+|+|+||||||||+ ++.++.+            |..|+  +
T Consensus      1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge-----kVaIVGrTGSGKSTLl~lLlrl~~------------p~~G~I~I 1369 (1560)
T PTZ00243       1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPRE-----KVGIVGRTGSGKSTLLLTFMRMVE------------VCGGEIRV 1369 (1560)
T ss_pred             CeEEEEEEEEEeCCCCCceeecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEE
Confidence            4578889887763   348999999999888     8999999999999999 7777766            88898  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhh--c-CCChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL--Y-GTSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~--y-G~~~~~I~~ile~v~L~~  153 (166)
                      ||++..-++..++++.   +.|+.++..+++..|.  + ..+.+++.++++.+++.+
T Consensus      1370 DG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243       1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRE 1426 (1560)
T ss_pred             CCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChH
Confidence            9998877788777764   4677788889999994  2 135577888888777653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.87  E-value=3.1e-09  Score=84.99  Aligned_cols=47  Identities=19%  Similarity=0.056  Sum_probs=37.9

Q ss_pred             Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263           3 IRNLTKTYKKGTKPAVDDLSLNVYKGE-----IFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             EEeeEEEeCCCCceeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456665553   457889999999888     8999999999999999 7777643

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.87  E-value=2.2e-09  Score=86.71  Aligned_cols=46  Identities=20%  Similarity=0.140  Sum_probs=36.3

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+.-
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219           3 VRGLTKRFGGLVALDDVSFSVRPGE-----IHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             eeeeEEEECCEEEecCceEEecCCc-----EEEEECCCCCCHHHHHHHHcCCC
Confidence            345555543 457888999998888     8999999999999999 777654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.86  E-value=1.5e-09  Score=86.60  Aligned_cols=95  Identities=20%  Similarity=0.236  Sum_probs=70.0

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER  118 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~  118 (166)
                      ..++.+.++.|+.||     .++|+||||||||||+ +++++.+            |.+||+  .|.+.+-.+.+....+
T Consensus        23 l~IL~~V~L~v~~Ge-----~vaiVG~SGSGKSTLl~vlAGLd~------------~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181          23 LSILKGVELVVKRGE-----TVAIVGPSGSGKSTLLAVLAGLDD------------PSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeEeecceEEecCCc-----eEEEEcCCCCcHHhHHHHHhcCCC------------CCCceEEEcCcchhhcCHHHHHHh
Confidence            567778889999999     8999999999999999 9999887            889985  6777777776665443


Q ss_pred             --------HHcCCccceeeehhh------hcCC----ChHHHHHHHhhccCCh
Q psy18088        119 --------IAAGEFLEHAEFAAN------LYGT----SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       119 --------~~~~~fle~~~~~gn------~yG~----~~~~I~~ile~v~L~~  153 (166)
                              +|+-.+++..+...|      .-|-    +++..++.++.|+|+.
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~  138 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK  138 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc
Confidence                    455556676666666      2342    2344566777788763

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.86  E-value=3.5e-09  Score=84.09  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCccee
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYH  108 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~  108 (166)
                      ++++++.+. ..++.+.++.+.+|+     +++|+||||||||||+ ++.+.-.            |.+|++  +|.+..
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~   65 (208)
T cd03268           3 TNDLTKTYGKKRVLDDISLHVKKGE-----IYGFLGPNGAGKTTTMKIILGLIK------------PDSGEITFDGKSYQ   65 (208)
T ss_pred             EEEEEEEECCeEeEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCCccc
Confidence            455665552 457888899998888     8999999999999999 7776543            666653  554321


Q ss_pred             ecCHHHHH----HHHHcCCccceeeehhhh------cCCChHHHHHHHhhccCCh
Q psy18088        109 FVTRADME----ERIAAGEFLEHAEFAANL------YGTSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       109 fvs~~~f~----~~~~~~~fle~~~~~gn~------yG~~~~~I~~ile~v~L~~  153 (166)
                      -.  ..+.    ...+...+++..++.+|.      ++...+.++++++.+++..
T Consensus        66 ~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~  118 (208)
T cd03268          66 KN--IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD  118 (208)
T ss_pred             ch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH
Confidence            11  1111    122333455555666652      2334455777777777754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.86  E-value=3.7e-09  Score=95.49  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=75.3

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      ..+++++++.+.   ..++.+.++.+++|+     .++|+||||||||||+ ++.+...            |.+|+  ++
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~  378 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGE-----ALAIIGPSGSGKSTLARLIVGIWP------------PTSGSVRLD  378 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEEC
Confidence            467788887762   357889999998888     8999999999999999 7777654            88887  48


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhhh-cCC---ChHHHHHHHhhccC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIF  151 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L  151 (166)
                      |.+...++...+.+.   +.+..++..+++.+|. ++-   +.+++.++++..++
T Consensus       379 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~  433 (544)
T TIGR01842       379 GADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV  433 (544)
T ss_pred             CEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhCh
Confidence            877665566665543   3455666677888884 332   34556666665554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.86  E-value=4.3e-09  Score=86.73  Aligned_cols=49  Identities=18%  Similarity=0.125  Sum_probs=39.7

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+...
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRPGE-----VVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667776663 457889999999888     8999999999999999 7777643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.85  E-value=4e-09  Score=105.60  Aligned_cols=107  Identities=18%  Similarity=0.077  Sum_probs=86.7

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +-.++++|++.+.   ..++.++++.+++||     .++|+|+||||||||+ ++.++.+            |.+|+  +
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge-----kiaIVGrTGsGKSTL~~lL~rl~~------------~~~G~I~I 1345 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGE-----KVGIVGRTGAGKSSLTLGLFRINE------------SAEGEIII 1345 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcc------------CCCCeEEE
Confidence            4577888887773   358999999999888     8999999999999999 7777776            88898  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhh--cC-CChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~  152 (166)
                      ||+|..-++...++..   +.|+.++..+++..|.  +| .+.+++.++++.+.+.
T Consensus      1346 dG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~ 1401 (1522)
T TIGR00957      1346 DGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLK 1401 (1522)
T ss_pred             CCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcH
Confidence            9999888888887764   5677888889999994  44 3567788888877764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0057|consensus

Probab=98.85  E-value=1.7e-09  Score=97.73  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=80.6

Q ss_pred             CceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         29 GITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        29 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      +..++++|+..+.  ..++.+.+|.|.+||     -++|+|+|||||||++ ++-++.+             .+|+  +|
T Consensus       350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGe-----kVaIvG~nGsGKSTilr~LlrF~d-------------~sG~I~Id  411 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGE-----KVAIVGSNGSGKSTILRLLLRFFD-------------YSGSILID  411 (591)
T ss_pred             CcEEEEeeEEEeCCCCceecceeEEecCCC-----EEEEECCCCCCHHHHHHHHHHHhc-------------cCCcEEEC
Confidence            4577888776664  558999999998888     8999999999999999 5555442             3576  59


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHHh---hccCC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGRN---YLIFN  152 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~ile---~v~L~  152 (166)
                      |++..-++.+.+++.   +.|+..+...++.-| .||-+..+-+++.+   ..++.
T Consensus       412 G~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~h  467 (591)
T KOG0057|consen  412 GQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLH  467 (591)
T ss_pred             CeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcH
Confidence            999888899998886   467788888888888 89987654444444   44544

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.85  E-value=9.3e-10  Score=87.52  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=36.7

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~l~~v~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269           3 VENVTKRFGRVTALDDISFSVEKGE-----IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEEEEECCEEEEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            456666553 456778899998888     8999999999999999 777754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.85  E-value=1.7e-09  Score=86.30  Aligned_cols=48  Identities=21%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++.+. .    .++.+.++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGE-----VTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            34566776664 2    57888899998888     8999999999999999 777764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.85  E-value=1.9e-09  Score=86.50  Aligned_cols=49  Identities=12%  Similarity=0.042  Sum_probs=39.2

Q ss_pred             eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+ . ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGE-----MAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            4566777766 3 457888999998888     8999999999999999 7777543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.85  E-value=1.2e-09  Score=87.73  Aligned_cols=46  Identities=17%  Similarity=0.107  Sum_probs=35.7

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.+.++.+++|+     +++|+||||+|||||+ ++.+..
T Consensus         3 l~~v~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740         3 TKNLSKRFGKQTAVNNISLTVPKNS-----VYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             EEeEEEEECCEEEEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            445555442 456788899998888     8999999999999999 776643

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.2e-09  Score=90.18  Aligned_cols=48  Identities=17%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGE-----LLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45667776653 457888999998888     8999999999999999 777654

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.84  E-value=1e-09  Score=87.82  Aligned_cols=48  Identities=19%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             EEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         32 VRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        32 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++.+.     ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211         3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGE-----IVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EEEeeeEEccCCCcceEeEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            4556666653     357888999998888     8999999999999999 7777543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1e-09  Score=88.86  Aligned_cols=50  Identities=20%  Similarity=0.086  Sum_probs=40.8

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.     ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGE-----MMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            466778887763     357888999999888     8999999999999999 7777543

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.84  E-value=3e-09  Score=93.76  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.+.-.            |.+|++  +|.
T Consensus         3 ~L~~~nls~~y~~~~vL~~vs~~i~~Ge-----iv~liGpNGaGKSTLLk~LaGll~------------p~sG~I~l~G~   65 (402)
T PRK09536          3 MIDVSDLSVEFGDTTVLDGVDLSVREGS-----LVGLVGPNGAGKTTLLRAINGTLT------------PTAGTVLVAGD   65 (402)
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEECCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            456677777664 567889999999888     8999999999999999 7777543            667763  665


Q ss_pred             ceeecCHHHHHH----HHHcCCccceeeehhh-hcCC----------C---hHHHHHHHhhccCChhH
Q psy18088        106 AYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----------S---QCGRQNGRNYLIFNTLA  155 (166)
Q Consensus       106 ~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----------~---~~~I~~ile~v~L~~~~  155 (166)
                      +....+..++.+    ..+...+....++.+| .+|.          +   .+.++++++.+++.+..
T Consensus        66 ~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~  133 (402)
T PRK09536         66 DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA  133 (402)
T ss_pred             EcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh
Confidence            543333333322    2333333333444444 1221          1   23467777788876443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.84  E-value=9.2e-10  Score=87.72  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++|+.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259           3 LKGLSKTYGSVRALDDLSLTVEPGE-----FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eeeeEEEeCCeeeecceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            445665553 457889999999888     8999999999999999 777654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.84  E-value=1.4e-09  Score=91.72  Aligned_cols=50  Identities=12%  Similarity=0.068  Sum_probs=41.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~NGaGKSTLl~~l~Gl~~   55 (303)
T TIGR01288         4 AIDLVGVSKSYGDKVVVNDLSFTIARGE-----CFGLLGPNGAGKSTIARMLLGMIS   55 (303)
T ss_pred             EEEEEeEEEEeCCeEEEcceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456778887774 457889999999888     8999999999999999 7777543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.84  E-value=3.4e-09  Score=89.44  Aligned_cols=107  Identities=12%  Similarity=0.042  Sum_probs=68.9

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      .+++++++.+. ..++.++++.+++|+     +++|+||+|+|||||+ ++.+...            |..|++  +|.+
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Ge-----i~~l~G~NGaGKTTLl~~l~Gl~~------------~~~G~i~i~g~~   65 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKGR-----IVGFLGPNGAGKSTTMKIITGYLP------------PDSGSVQVCGED   65 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence            45667777763 567889999999888     8999999999999999 7777543            666763  5654


Q ss_pred             eeecCHHHH----HHHHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChhH
Q psy18088        107 YHFVTRADM----EERIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTLA  155 (166)
Q Consensus       107 y~fvs~~~f----~~~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~~  155 (166)
                      ..- .....    ..+.+...+.++.++.+|      .||.+.    +.++++++.++|.+..
T Consensus        66 ~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~  127 (301)
T TIGR03522        66 VLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ  127 (301)
T ss_pred             ccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh
Confidence            321 11111    122344445555555555      356552    4566777778877543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.84  E-value=4.1e-09  Score=85.49  Aligned_cols=49  Identities=14%  Similarity=0.020  Sum_probs=39.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||+|||||+ ++.+.-
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPGE-----LRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            345667776663 457888999999888     8999999999999999 777653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.83  E-value=1.3e-09  Score=86.10  Aligned_cols=49  Identities=10%  Similarity=0.015  Sum_probs=35.5

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+....+-++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFDLSITFLPSA-----ITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             eEEEEeeEEECCcEEEEEEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            34566666664222223778888777     8999999999999999 7777543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.83  E-value=7.5e-10  Score=88.76  Aligned_cols=47  Identities=13%  Similarity=0.127  Sum_probs=36.6

Q ss_pred             Eeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.     ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293           3 VRNVSKTYGGGGGAVTALEDISLSVEEGE-----FVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             EEEEEEEcCCCCcceEEEeceeEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            345554442     357788999998888     8999999999999999 7777643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.83  E-value=2.7e-09  Score=84.68  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=35.6

Q ss_pred             eecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~~~~~~~l~~v~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226           4 NISFSYKKGTEILDDLSLDLYAGE-----IIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             cEEEEeCCcCceeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            4444442  457888899998888     8999999999999999 7777543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.82  E-value=1.1e-09  Score=90.81  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.+...            |..|++  +|.
T Consensus        12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge-----~~~I~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~   74 (257)
T PRK11247         12 PLLLNAVSKRYGERTVLNQLDLHIPAGQ-----FVAVVGRSGCGKSTLLRLLAGLET------------PSAGELLAGTA   74 (257)
T ss_pred             cEEEEEEEEEECCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCE
Confidence            567788887774 457888999999888     8999999999999999 7777543            555653  332


Q ss_pred             ceeecCHHHHHHHHHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088        106 AYHFVTRADMEERIAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~f~~~~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~  153 (166)
                      +.... ...+....+...+.++.++.+|. ++.   ....+.++++.+++.+
T Consensus        75 ~~~~~-~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~  125 (257)
T PRK11247         75 PLAEA-REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD  125 (257)
T ss_pred             EHHHh-hCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh
Confidence            21000 00011112333344555666662 332   1345667777777754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.82  E-value=1.2e-09  Score=95.08  Aligned_cols=94  Identities=14%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHH----
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADM----  115 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f----  115 (166)
                      .++.++++.+++||     +++|+||||||||||+ ++.++..            |..|+  ++|++....+..++    
T Consensus         7 ~~l~~vs~~i~~Ge-----i~~l~G~sGsGKSTLLr~L~Gl~~------------p~~G~I~i~G~~i~~~~~~~~~~~r   69 (363)
T TIGR01186         7 KGVNDADLAIAKGE-----IFVIMGLSGSGKSTTVRMLNRLIE------------PTAGQIFIDGENIMKQSPVELREVR   69 (363)
T ss_pred             eeEEeeEEEEcCCC-----EEEEECCCCChHHHHHHHHhCCCC------------CCceEEEECCEECCcCCHHHHHHHH
Confidence            35677888888888     8999999999999999 8887664            77887  47776544444433    


Q ss_pred             ----HHHHHcCCccceeeehhh-h-----cCCCh----HHHHHHHhhccCCh
Q psy18088        116 ----EERIAAGEFLEHAEFAAN-L-----YGTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       116 ----~~~~~~~~fle~~~~~gn-~-----yG~~~----~~I~~ile~v~L~~  153 (166)
                          ...+|+..++++.++.+| .     +|.+.    +.+.++++.++|..
T Consensus        70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~  121 (363)
T TIGR01186        70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE  121 (363)
T ss_pred             hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch
Confidence                123456667777788777 2     34443    34556667777753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.82  E-value=5.6e-09  Score=84.69  Aligned_cols=108  Identities=14%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC-
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG-  104 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G-  104 (166)
                      .+..++++..|. ..++.++||.|+.||     .-+|+||+|+||||++ +|.+.-.            |..|++  +| 
T Consensus         5 iL~~~~vsVsF~GF~Aln~ls~~v~~Ge-----lr~lIGpNGAGKTT~mD~ItGKtr------------p~~G~v~f~g~   67 (249)
T COG4674           5 ILYLDGVSVSFGGFKALNDLSFSVDPGE-----LRVLIGPNGAGKTTLMDVITGKTR------------PQEGEVLFDGD   67 (249)
T ss_pred             eEEEeceEEEEcceeeeeeeEEEecCCe-----EEEEECCCCCCceeeeeeecccCC------------CCcceEEEcCc
Confidence            577888898885 888999999999999     7999999999999999 7777543            666763  44 


Q ss_pred             cceeecCHHHHH-----HHHHcCCccceeeehhhh------------------cCCChHHHHHHHhhccCChh
Q psy18088        105 KAYHFVTRADME-----ERIAAGEFLEHAEFAANL------------------YGTSQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       105 ~~y~fvs~~~f~-----~~~~~~~fle~~~~~gn~------------------yG~~~~~I~~ile~v~L~~~  154 (166)
                      .+..-.+..++.     +.+|....++..++.+|+                  -+..+++|+++++.++|.+.
T Consensus        68 ~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~  140 (249)
T COG4674          68 TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE  140 (249)
T ss_pred             hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh
Confidence            343333333333     335666666666655541                  12234678888988888754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.82  E-value=1.5e-09  Score=88.23  Aligned_cols=48  Identities=19%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSGE-----LVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45667776653 457889999999888     8999999999999999 777654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.82  E-value=1.2e-09  Score=87.85  Aligned_cols=46  Identities=20%  Similarity=0.094  Sum_probs=36.4

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260           3 LRDLNVYYGDKHALKDISLDIPKGE-----ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEEEEcCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhhc
Confidence            456666553 357788899998888     8999999999999999 666643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.82  E-value=2.4e-09  Score=84.62  Aligned_cols=47  Identities=17%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189         3 ARNLACSRGERMLFEGLSFTLNAGE-----ALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             EEEEEEEECCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            445555543 456788999998888     8999999999999999 7777543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.82  E-value=1.3e-09  Score=89.12  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005         2 RFSDVTKRFGILTVLDGLNFSVAAGE-----KVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             EEEEEEEEeCCeeEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            3556666663 457788999999888     8999999999999999 7777653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=3.9e-09  Score=88.14  Aligned_cols=50  Identities=12%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.++++++.+.    ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   58 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGE-----WLSIIGHNGSGKSTTVRLIDGLLE   58 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            466778887763    237889999999888     8999999999999999 7777654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.81  E-value=1.9e-09  Score=87.52  Aligned_cols=49  Identities=14%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGE-----VVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667776653 457888999998888     8999999999999999 7777543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.81  E-value=2.9e-09  Score=85.38  Aligned_cols=47  Identities=21%  Similarity=0.102  Sum_probs=37.8

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         2 ~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265           2 EVENLVKKYGDFEAVRGVSFRVRRGE-----IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEEEEEECCEEeeeceeEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            3556666653 457888999999888     8999999999999999 777754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.81  E-value=3.3e-09  Score=85.99  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGE-----FVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            34566666553 457788999998888     8999999999999999 777754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.81  E-value=6.8e-09  Score=89.12  Aligned_cols=109  Identities=13%  Similarity=0.033  Sum_probs=68.3

Q ss_pred             ceEEeeecceee--------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeec
Q psy18088         30 ITVRILLNYRTC--------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTT   94 (166)
Q Consensus        30 ~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TT   94 (166)
                      +++++++++.+.              ..++.++|+.|++||     +++|+|+||||||||+ +|.++..          
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~lvG~sGsGKSTLlk~i~Gl~~----------   72 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGE-----TLGVVGESGCGKSTFARAIIGLVK----------   72 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHCCCC----------
Confidence            567778877663              357789999999888     8999999999999999 6666553          


Q ss_pred             CCCCCCcc--CCcceeecCHHHHHHH-------HHcC--Cccceeeehhhh------c--CCChH----HHHHHHhhccC
Q psy18088         95 RGPRPGEV--DGKAYHFVTRADMEER-------IAAG--EFLEHAEFAANL------Y--GTSQC----GRQNGRNYLIF  151 (166)
Q Consensus        95 R~p~~ge~--~G~~y~fvs~~~f~~~-------~~~~--~fle~~~~~gn~------y--G~~~~----~I~~ile~v~L  151 (166)
                        |.+|++  +|.+..-.+..++...       +|+.  .+.+..++.+|.      +  +.+.+    .++++++.+++
T Consensus        73 --p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl  150 (331)
T PRK15079         73 --ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL  150 (331)
T ss_pred             --CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC
Confidence              666763  6665433333332221       2221  244455555552      2  23432    34556667787


Q ss_pred             ChhH
Q psy18088        152 NTLA  155 (166)
Q Consensus       152 ~~~~  155 (166)
                      .+..
T Consensus       151 ~~~~  154 (331)
T PRK15079        151 LPNL  154 (331)
T ss_pred             ChHH
Confidence            5443

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.80  E-value=7.4e-09  Score=84.23  Aligned_cols=104  Identities=15%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      ++++++.+.  ..++.++++.+++|+     +++|+||||+|||||+ ++.+...            |..|++  +|.+.
T Consensus         3 ~~~l~~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~   65 (242)
T cd03295           3 FENVTKRYGGGKKAVNNLNLEIAKGE-----FLVLIGPSGSGKTTTMKMINRLIE------------PTSGEIFIDGEDI   65 (242)
T ss_pred             EEEEEEEeCCcceEeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCeEc
Confidence            456665553  357788899998888     8999999999999999 7776543            556653  55432


Q ss_pred             eecCHHHHH----HHHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088        108 HFVTRADME----ERIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       108 ~fvs~~~f~----~~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~  153 (166)
                      ...+...+.    ...+...+....++.+|.      .+.+.    +.+.++++.+++.+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~  125 (242)
T cd03295          66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP  125 (242)
T ss_pred             CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence            211222211    122333444445555552      12221    34566677777764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.80  E-value=8.5e-09  Score=85.22  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=41.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .+.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253          7 RLRGEQLTLGYGKYTVAENLTVEIPDGH-----FTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             EEEEEEEEEEECCEEEeeecceEECCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            566778887774 457889999999888     8999999999999999 7777543

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.80  E-value=5.7e-09  Score=83.11  Aligned_cols=49  Identities=20%  Similarity=0.153  Sum_probs=39.5

Q ss_pred             eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+ . ..++.++|+.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~-----~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGE-----FLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            4566777665 2 467889999999888     8999999999999999 7777643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.80  E-value=3.9e-09  Score=83.84  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      +++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+...            |.+|++  +|.+.
T Consensus         2 ~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~   64 (201)
T cd03231           2 EADELTCERDGRALFSGLSFTLAAGE-----ALQVTGPNGSGKTTLLRILAGLSP------------PLAGRVLLNGGPL   64 (201)
T ss_pred             EEEEEEEEeCCceeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEec
Confidence            3456666653 456788999999888     8999999999999999 7777543            666653  45442


Q ss_pred             eecCHHHHHH----HHHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088        108 HFVTRADMEE----RIAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       108 ~fvs~~~f~~----~~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~  153 (166)
                      ...+ ..+.+    ..+...+.+..++.+|. +..   ..+.++++++.+++.+
T Consensus        65 ~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~  117 (201)
T cd03231          65 DFQR-DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG  117 (201)
T ss_pred             cccc-HHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh
Confidence            2111 11211    12233344445565652 211   2345677777777763

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=4.1e-09  Score=87.75  Aligned_cols=50  Identities=20%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.  ..++.++|+.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGS-----KTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence            466778887763  458889999999888     8999999999999999 7777543

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=8.8e-09  Score=83.93  Aligned_cols=48  Identities=10%  Similarity=0.121  Sum_probs=39.3

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250          4 IEFKEVSYSSFGKEILKDISVKFEGGA-----IYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45677777763 457788999998888     8999999999999999 777654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.79  E-value=1e-08  Score=85.60  Aligned_cols=48  Identities=19%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ +|.+..
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGR-----VTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45677777664 457889999998888     8999999999999999 777654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.78  E-value=1.8e-09  Score=85.91  Aligned_cols=46  Identities=17%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301           3 LENVTKRFGNVTALDDLNLDIADGE-----FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEeeEEEECCeeeeeceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            456665553 457888999998888     8999999999999999 777653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=1.5e-09  Score=95.64  Aligned_cols=96  Identities=15%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHH--
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADME--  116 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~--  116 (166)
                      ..++.++++.+++|+     +++|+||||||||||+ +|.++..            |..|++  +|.+..-.+...+.  
T Consensus        41 ~~~L~~isl~i~~Ge-----i~~LvG~NGsGKSTLLr~I~Gl~~------------p~sG~I~i~G~~i~~~~~~~l~~~  103 (400)
T PRK10070         41 SLGVKDASLAIEEGE-----IFVIMGLSGSGKSTMVRLLNRLIE------------PTRGQVLIDGVDIAKISDAELREV  103 (400)
T ss_pred             eEEEEeEEEEEcCCC-----EEEEECCCCchHHHHHHHHHcCCC------------CCCCEEEECCEECCcCCHHHHHHH
Confidence            345778899999888     8999999999999999 8877654            777863  66654333332221  


Q ss_pred             ------HHHHcCCccceeeehhhh-c-----CCCh----HHHHHHHhhccCChh
Q psy18088        117 ------ERIAAGEFLEHAEFAANL-Y-----GTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       117 ------~~~~~~~fle~~~~~gn~-y-----G~~~----~~I~~ile~v~L~~~  154 (166)
                            ..+|...++++.++.+|. +     |.+.    +.+.++++.++|.+.
T Consensus       104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~  157 (400)
T PRK10070        104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY  157 (400)
T ss_pred             HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh
Confidence                  223444556666777662 2     3332    335566777777643

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.78  E-value=8.4e-09  Score=83.79  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=72.2

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~  106 (166)
                      .++.+|+|.+. ..++++.|..+.+|.     +.+|+||+|+|||||+ +++++-.            +.+|+  ++|.+
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~g~-----iTs~IGPNGAGKSTLLS~~sRL~~------------~d~G~i~i~g~~   64 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPKGG-----ITSIIGPNGAGKSTLLSMMSRLLK------------KDSGEITIDGLE   64 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecCCc-----eeEEECCCCccHHHHHHHHHHhcc------------ccCceEEEeeee
Confidence            45667788885 556777776665555     8999999999999999 8888765            67777  47766


Q ss_pred             eeecCHHHHHH----HHHcCCccceeeehhh--------hcCCC----hHHHHHHHhhccCChhHHhhC
Q psy18088        107 YHFVTRADMEE----RIAAGEFLEHAEFAAN--------LYGTS----QCGRQNGRNYLIFNTLAAKCL  159 (166)
Q Consensus       107 y~fvs~~~f~~----~~~~~~fle~~~~~gn--------~yG~~----~~~I~~ile~v~L~~~~~~~l  159 (166)
                      ..-.+..+..+    +.|.+.+-.-.++.+-        .-|-.    ..-|.++++++.|.+..-+.|
T Consensus        65 ~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL  133 (252)
T COG4604          65 LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL  133 (252)
T ss_pred             cccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH
Confidence            54444444433    3455555555555432        12322    234677778888775544444

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.78  E-value=2e-09  Score=92.91  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeec-
Q psy18088         35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFV-  110 (166)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fv-  110 (166)
                      ++++.+..... ++++.+++|+     +++|+||||||||||+ +|.+...            |.+|++  +|.+.... 
T Consensus         5 ~l~k~~~~~~~-~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~~~~~~   66 (352)
T PRK11144          5 NFKQQLGDLCL-TVNLTLPAQG-----ITAIFGRSGAGKTSLINAISGLTR------------PQKGRIVLNGRVLFDAE   66 (352)
T ss_pred             EEEEEeCCEEE-EEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence            55555532222 6788888888     8999999999999999 7777643            555543  44332110 


Q ss_pred             -----C--HHHHHHHHHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCChh
Q psy18088        111 -----T--RADMEERIAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFNTL  154 (166)
Q Consensus       111 -----s--~~~f~~~~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~~~  154 (166)
                           .  ...+...++...+.++.++.+| .||..   .+.++++++.++|.+.
T Consensus        67 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~  121 (352)
T PRK11144         67 KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL  121 (352)
T ss_pred             cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh
Confidence                 0  0011122344456666777777 44532   3456777778887643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=3.5e-09  Score=85.98  Aligned_cols=50  Identities=12%  Similarity=0.006  Sum_probs=39.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGE-----IVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            355667776653 457788999999888     8999999999999999 7777643

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.77  E-value=9.9e-09  Score=84.24  Aligned_cols=48  Identities=15%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ +|.+...
T Consensus         3 ~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873         3 RLSRVSWSAGGRLIVDGVDVTAPPGS-----LTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             eEEeEEEEECCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            3456666553 457889999999888     8999999999999999 7777643

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=4.3e-09  Score=85.09  Aligned_cols=48  Identities=13%  Similarity=0.071  Sum_probs=36.5

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.... .++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~-~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771          2 LKLTDITWLYHHLP-MRFDLTVERGE-----RVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             eEEEEEEEEECCcc-ceeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667777764222 37788888777     8999999999999999 7777543

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=7.8e-09  Score=86.37  Aligned_cols=50  Identities=18%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.   ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEGE-----WVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence            567788887763   348889999999888     8999999999999999 7777543

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.76  E-value=5e-09  Score=83.35  Aligned_cols=46  Identities=13%  Similarity=0.057  Sum_probs=33.9

Q ss_pred             EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+..... +.++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~-~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298           3 LDKIRFSYGEQPM-HFDLTFAQGE-----ITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EEeEEEEeCCEec-ceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            4456655532222 7788888888     8999999999999999 7776543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=5.9e-09  Score=84.69  Aligned_cols=49  Identities=16%  Similarity=-0.014  Sum_probs=39.7

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQGE-----TLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667776664 467889999999888     8999999999999999 7777653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.75  E-value=1.8e-09  Score=85.41  Aligned_cols=38  Identities=13%  Similarity=0.133  Sum_probs=32.4

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus        11 ~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        11 KIILDDLNLTIEKGK-----MYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EEEEeceEEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            357788999998888     8999999999999999 7777543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.75  E-value=2.8e-09  Score=95.51  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.-
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~~   54 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPGR-----VMALVGENGAGKSTMMKVLTGIY   54 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            567778887774 457889999998888     8999999999999999 777754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.75  E-value=6.4e-09  Score=93.52  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...            |..|++  +|.
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   73 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGE-----VHALLGGNGAGKSTLMKIIAGIVP------------PDSGTLEIGGN   73 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence            577888888774 457889999998888     8999999999999999 7777543            666663  554


Q ss_pred             ceeecCHHHHH-----HHHHcCCccceeeehhh-hcCCC-----hHHHHHHHhhccCC
Q psy18088        106 AYHFVTRADME-----ERIAAGEFLEHAEFAAN-LYGTS-----QCGRQNGRNYLIFN  152 (166)
Q Consensus       106 ~y~fvs~~~f~-----~~~~~~~fle~~~~~gn-~yG~~-----~~~I~~ile~v~L~  152 (166)
                      +....+.....     ...+...+..+.++.+| .++..     .+.++++++.+++.
T Consensus        74 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~  131 (510)
T PRK15439         74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ  131 (510)
T ss_pred             ECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC
Confidence            43212222111     12233344555566666 23321     23456666677765

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.75  E-value=3.8e-09  Score=89.11  Aligned_cols=94  Identities=18%  Similarity=0.147  Sum_probs=60.2

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHH----
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADM----  115 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f----  115 (166)
                      .++.++++.+++|+     +++|+||||||||||+ ++.+.-.            |.+|++  +|.+... ....+    
T Consensus         7 ~~l~~vs~~i~~Ge-----~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i   68 (302)
T TIGR01188         7 KAVDGVNFKVREGE-----VFGFLGPNGAGKTTTIRMLTTLLR------------PTSGTARVAGYDVVR-EPRKVRRSI   68 (302)
T ss_pred             eEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-CHHHHHhhc
Confidence            46778899998888     8999999999999999 7777543            777763  6654321 11122    


Q ss_pred             HHHHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088        116 EERIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       116 ~~~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~  154 (166)
                      ..+.+...+.++.++.+|      .+|.+.    +.++++++.++|.+.
T Consensus        69 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  117 (302)
T TIGR01188        69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA  117 (302)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH
Confidence            123344445555566555      245543    235667777777643

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.74  E-value=3.5e-09  Score=84.63  Aligned_cols=47  Identities=17%  Similarity=0.022  Sum_probs=36.9

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224           3 VENLNAGYGKSQILFGVSLTVPEGE-----IVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EeeEEeecCCeeEeeeeeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456665543 357788899998888     8999999999999999 7776543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=1.5e-08  Score=83.07  Aligned_cols=48  Identities=13%  Similarity=0.078  Sum_probs=38.6

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.+.-
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPTGK-----ITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcCCc-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            45666666553 457888999999888     8999999999999999 777754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.73  E-value=5.3e-09  Score=84.27  Aligned_cols=47  Identities=19%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410         3 VSNLNVYYGQSHILRGVSLEVPKGE-----VTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EEeEEEEeCCeEEecceeeEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456666553 457888999999888     8999999999999999 7777653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1.5e-08  Score=84.70  Aligned_cols=50  Identities=14%  Similarity=0.117  Sum_probs=41.2

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .+++++++++.+.   ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge-----~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGS-----WTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhccc
Confidence            3577888888773   347889999998888     8999999999999999 777654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.72  E-value=9.7e-09  Score=84.55  Aligned_cols=49  Identities=20%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.+..
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHGE-----MVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCCc-----EEEEECCCCCCHHHHHHHHhccC
Confidence            456777777664 567889999999888     8999999999999999 777653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=1.7e-08  Score=82.33  Aligned_cols=47  Identities=11%  Similarity=0.015  Sum_probs=39.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247          4 IEIRDLKVSFGQVEVLDGVNLEIPDNT-----ITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             EEEEeeEEEECCeeeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            56677777664 457888999999888     8999999999999999 77765

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.71  E-value=1.5e-08  Score=84.88  Aligned_cols=55  Identities=20%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRA  113 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~  113 (166)
                      +.+++++||.+.+||     +++|+|.||||||||. ++.++..            |..|++  +|.+....+.+
T Consensus        26 v~avd~Vsf~i~~ge-----~~glVGESG~GKSTlgr~i~~L~~------------pt~G~i~f~g~~i~~~~~~   83 (268)
T COG4608          26 VKAVDGVSFSIKEGE-----TLGLVGESGCGKSTLGRLILGLEE------------PTSGEILFEGKDITKLSKE   83 (268)
T ss_pred             eEEecceeEEEcCCC-----EEEEEecCCCCHHHHHHHHHcCcC------------CCCceEEEcCcchhhcchh
Confidence            467888999999999     8999999999999999 7777665            889985  77776555543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.70  E-value=5e-09  Score=83.69  Aligned_cols=46  Identities=13%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ....+.++.+++|+     +++|+||||||||||+ ++.+.-.
T Consensus         3 ~~~l~~~~~-~~~~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277         3 LDKVRYEYE-HLPMEFDLNVADGE-----IVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             EEeeeEEeC-CcceeeEEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            456665554 23457788888777     8999999999999999 7776543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.70  E-value=1.2e-08  Score=82.11  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.     ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGE-----TIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC
Confidence            567778887664     247889999998888     8999999999999999 7777643

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.70  E-value=1.3e-08  Score=80.84  Aligned_cols=47  Identities=17%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.  ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~l~~~sl~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292           3 FINVTKTYPNGTAALDGINISISAGE-----FVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EEEEEEEeCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            456666653  357888999998888     8999999999999999 7777643

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.70  E-value=1.1e-08  Score=81.49  Aligned_cols=46  Identities=20%  Similarity=0.057  Sum_probs=35.2

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|      .++|+||||||||||+ ++.+...
T Consensus         3 ~~~~~~~~~~~~~l~~vs~~i~~g------~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264           3 LENLTKRYGKKRALDGVSLTLGPG------MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             EEEEEEEECCEEEEcceeEEEcCC------cEEEECCCCCCHHHHHHHHhCCCC
Confidence            456666653 45778888888753      5999999999999999 7777543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.70  E-value=1.7e-08  Score=83.37  Aligned_cols=49  Identities=12%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             eEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.          ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE-----TVGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45667776652          457889999999888     8999999999999999 7777643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.9e-09  Score=84.92  Aligned_cols=50  Identities=18%  Similarity=0.038  Sum_probs=41.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQGE-----IVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            567788888764 457888999999888     8999999999999999 7776543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.69  E-value=8.3e-09  Score=92.55  Aligned_cols=50  Identities=10%  Similarity=0.044  Sum_probs=41.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~liG~nGsGKSTLl~~i~Gl~~   56 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYPGE-----IHALLGENGAGKSTLMKVLSGIHE   56 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCcC
Confidence            567778887774 457889999999888     8999999999999999 7777543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.69  E-value=2.3e-08  Score=81.95  Aligned_cols=91  Identities=21%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             eeccee-eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceee-
Q psy18088         35 LLNYRT-CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHF-  109 (166)
Q Consensus        35 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~f-  109 (166)
                      +++.-+ ...++.++++.+.+.+     +.+|+|||||||||++ .+++.-+.+.. +      .-+|++  +|++.+- 
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~-----VTAlIGPSGcGKST~LR~lNRmndl~~~-~------r~~G~v~~~g~ni~~~   79 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNK-----VTALIGPSGCGKSTLLRCLNRMNDLIPG-A------RVEGEVLLDGKNIYDP   79 (253)
T ss_pred             ceeEEECchhhhccCceeccCCc-----eEEEECCCCcCHHHHHHHHHhhcccCcC-c------eEEEEEEECCeeccCC
Confidence            444333 3678888888887666     8999999999999999 66654431110 1      113553  6665432 


Q ss_pred             -cCHHHHHH----HHHcCCccceeeehhh-hcCCC
Q psy18088        110 -VTRADMEE----RIAAGEFLEHAEFAAN-LYGTS  138 (166)
Q Consensus       110 -vs~~~f~~----~~~~~~fle~~~~~gn-~yG~~  138 (166)
                       ++..++++    .+|+..-++ ..+.+| .||..
T Consensus        80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r  113 (253)
T COG1117          80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR  113 (253)
T ss_pred             CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence             34444444    356655555 667777 67753

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2e-08  Score=82.74  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=72.7

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      ++++.++.++-.  ...+...++.|+.||     +.+|+||+|||||||. .|.++|+ |.         +..|++  +|
T Consensus         3 ~L~I~dLhv~v~~~keILkgvnL~v~~GE-----vhaiMGPNGsGKSTLa~~i~G~p~-Y~---------Vt~G~I~~~G   67 (251)
T COG0396           3 MLEIKDLHVEVEGKKEILKGVNLTVKEGE-----VHAIMGPNGSGKSTLAYTIMGHPK-YE---------VTEGEILFDG   67 (251)
T ss_pred             eeEEeeeEEEecCchhhhcCcceeEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC-ce---------EecceEEECC
Confidence            456667666654  478999999999999     8999999999999999 8888884 11         445764  78


Q ss_pred             cceeecCHHHHHHHHHcCCccceeee--------------hhh-hcCC------ChHHHHHHHhhccCChhHHhh
Q psy18088        105 KAYHFVTRADMEERIAAGEFLEHAEF--------------AAN-LYGT------SQCGRQNGRNYLIFNTLAAKC  158 (166)
Q Consensus       105 ~~y~fvs~~~f~~~~~~~~fle~~~~--------------~gn-~yG~------~~~~I~~ile~v~L~~~~~~~  158 (166)
                      ++....+.++-.+   .|-|+.|-.-              ..| ..+.      -...+++.++.+++++..+++
T Consensus        68 edI~~l~~~ERAr---~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R  139 (251)
T COG0396          68 EDILELSPDERAR---AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER  139 (251)
T ss_pred             cccccCCHhHHHh---cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc
Confidence            7765555554433   3555555321              111 1111      124566667778888755544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.68  E-value=3.3e-08  Score=79.05  Aligned_cols=49  Identities=20%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGE-----KVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCC-----EEEEECCCCCCHHHHHHHHHcCCC
Confidence            45667776653   357889999999888     8999999999999999 7777543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.68  E-value=1.4e-08  Score=81.27  Aligned_cols=49  Identities=16%  Similarity=0.028  Sum_probs=38.9

Q ss_pred             eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+. .    .++.+.++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGE-----TLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            34567776653 2    57889999999888     8999999999999999 7777543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=2.9e-08  Score=82.71  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=40.7

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.  ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~Gl~~   55 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNS-----RIAVIGPNGAGKSTLFRHFNGILK   55 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            456677877763  347889999999888     8999999999999999 7777643

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.68  E-value=1.4e-08  Score=81.93  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=41.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRAGE-----FKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence            577888888774 457889999999888     8999999999999999 777754

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.68  E-value=2.2e-08  Score=83.94  Aligned_cols=105  Identities=17%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             eEEeeeccee---eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         31 TVRILLNYRT---CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        31 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      ++++++++.+   ...++.++++.+++|+     +++|+||||+|||||+ ++.+..             +.+|+  ++|
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge-----~~~IvG~nGsGKSTLl~~L~gl~-------------~~~G~I~i~g   64 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQ-----RVGLLGRTGSGKSTLLSAFLRLL-------------NTEGDIQIDG   64 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhhhc-------------CCCcEEEECC
Confidence            4567777776   2457889999999888     8999999999999999 776654             12354  355


Q ss_pred             cceeecCHHHHHH----HHHcCCccceeeehhhh--cC-CChHHHHHHHhhccCChh
Q psy18088        105 KAYHFVTRADMEE----RIAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       105 ~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~~~  154 (166)
                      ++..-++......    ..+...+++ +++.+|.  ++ ...+.+.++++.++|.+.
T Consensus        65 ~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~  120 (275)
T cd03289          65 VSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSV  120 (275)
T ss_pred             EEhhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHH
Confidence            4432222222222    123333333 4666664  33 345667777777777644

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.67  E-value=1.4e-08  Score=80.75  Aligned_cols=45  Identities=24%  Similarity=0.283  Sum_probs=35.2

Q ss_pred             eecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~~~~~~~il~~vs~~i~~G~-----~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225           4 NLSFSYPDGARPALDDISLTIKKGE-----FVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             eEEEecCCCCeeeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            4444442   357788899998888     8999999999999999 7777543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.67  E-value=2.2e-08  Score=100.20  Aligned_cols=107  Identities=19%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +-.++++|++.+.   ..++.++++.+++|+     .|+|+|+||||||||+ ++.++.             +.+|+  +
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge-----kvaIvGrSGsGKSTLl~lL~rl~-------------~~~G~I~I 1277 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ-----RVGLLGRTGSGKSTLLSALLRLL-------------STEGEIQI 1277 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhhhc-------------CCCcEEEE
Confidence            4577888887773   468899999999888     8999999999999999 666654             23576  5


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhhhc--C-CChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANLY--G-TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~y--G-~~~~~I~~ile~v~L~~  153 (166)
                      ||++..-++...+++.   +.|+.++..+++..|.-  + .+.+++.++++.+.|.+
T Consensus      1278 dG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~ 1334 (1490)
T TIGR01271      1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKS 1334 (1490)
T ss_pred             CCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHH
Confidence            9998877787777663   56778888899999952  2 25577888888777643

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0708|consensus

Probab=98.67  E-value=8.3e-09  Score=89.26  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=87.2

Q ss_pred             CCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccce
Q psy18088         50 SGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH  127 (166)
Q Consensus        50 ~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~  127 (166)
                      ..|++.++...|+|+|+||-   |.-|+  |+..+|++|+.++++|||+.              .+++++.++.+.|+++
T Consensus       177 ~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~  239 (359)
T KOG0708|consen  177 ELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDA  239 (359)
T ss_pred             hhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeee
Confidence            36788888999999999998   88888  99999999999999999964              6779999999999999


Q ss_pred             eeehhhhcCCChHHHHHHHh-----hccCChhHHhhC--CccCC
Q psy18088        128 AEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCL--PTVFP  164 (166)
Q Consensus       128 ~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l--~~~~p  164 (166)
                      +++.+++||++..+|+++.+     ++++...+++.|  -++||
T Consensus       240 ~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyP  283 (359)
T KOG0708|consen  240 GQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYP  283 (359)
T ss_pred             cccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceec
Confidence            99999999999999999998     678888899888  45666

>PRK00098 GTPase RsgA; Reviewed

Probab=98.66  E-value=1.2e-08  Score=86.24  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=65.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC------------CcceeecCHHHHHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD------------GKAYHFVTRADMEER  118 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~------------G~~y~fvs~~~f~~~  118 (166)
                      +++++|+|+||+|||||+  |+.... .....++       ||||.++..+++            +.++.+++.+++...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  242 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY  242 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence            568999999999999999  554433 2333444       688866554333            335566787777765


Q ss_pred             HHc-CCccceeeehh-hhcCCChHHHHHHHhhccCChhHHhh
Q psy18088        119 IAA-GEFLEHAEFAA-NLYGTSQCGRQNGRNYLIFNTLAAKC  158 (166)
Q Consensus       119 ~~~-~~fle~~~~~g-n~yG~~~~~I~~ile~v~L~~~~~~~  158 (166)
                      +.. ..+..+..+.+ .+|+.|.++|+++++.=.+.+...+.
T Consensus       243 f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~  284 (298)
T PRK00098        243 FPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYES  284 (298)
T ss_pred             HHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHH
Confidence            543 45566666666 58999999999999843344444433

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.66  E-value=2.1e-08  Score=82.38  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++.++++--+. .+++.+.|+.|++||     +++|+||+|+|||||+ -|.+...            ++.|++  +|.
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~Ge-----iv~llG~NGaGKTTlLkti~Gl~~------------~~~G~I~~~G~   65 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVERGE-----IVALLGRNGAGKTTLLKTIMGLVR------------PRSGRIIFDGE   65 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeeEEECCe
Confidence            455666665553 788889999999999     8999999999999999 6666553            666664  666


Q ss_pred             ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn  133 (166)
                      |..-.+..+.-+     ..+....++..++.+|
T Consensus        66 dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN   98 (237)
T COG0410          66 DITGLPPHERARLGIAYVPEGRRIFPRLTVEEN   98 (237)
T ss_pred             ecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence            654444443322     2344455666777777

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=1e-08  Score=91.91  Aligned_cols=49  Identities=16%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++|+.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   55 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAGE-----IVSLCGENGAGKSTLMKVLSGVY   55 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            577888888774 457889999999888     8999999999999999 777653

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.65  E-value=2.3e-08  Score=80.32  Aligned_cols=52  Identities=13%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             hcCceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         27 NAGITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      -+++++++++++.+.    ..++.++++.+++|+     +++|+||||||||||+ ++.+.-
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGE-----VTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence            345788888888774    358889999998888     8999999999999999 777754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.65  E-value=1.7e-08  Score=84.22  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=67.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .++++.|++.|. ..++.++||.|++|+     ++.++||+|+||||.+ +|.++-.            |.+|++  +|.
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~-----i~GllG~NGAGKTTtfRmILglle------------~~~G~I~~~g~   64 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGE-----IFGLLGPNGAGKTTTFRMILGLLE------------PTEGEITWNGG   64 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCe-----EEEeecCCCCCccchHHHHhccCC------------ccCceEEEcCc
Confidence            357888999996 778899999999888     8999999999999999 7777665            888875  665


Q ss_pred             ceeecCHHHHHHHHHcCCccceeeeh------hhhcCCChHHHHHHH
Q psy18088        106 AYHFVTRADMEERIAAGEFLEHAEFA------ANLYGTSQCGRQNGR  146 (166)
Q Consensus       106 ~y~fvs~~~f~~~~~~~~fle~~~~~------gn~yG~~~~~I~~il  146 (166)
                      +........+.++.....+..-.++.      +.+-|.++.++++-+
T Consensus        65 ~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~  111 (300)
T COG4152          65 PLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL  111 (300)
T ss_pred             chhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence            43222333344443333333333433      335678876555433

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.65  E-value=5.2e-09  Score=86.84  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             eeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         34 ILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        34 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus        28 ~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          28 EEILKKTGQTVGVNDVSLDVREGE-----IFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             hhhhhhcCCceEeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            35555553 446788899998888     8999999999999999 7776543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.65  E-value=5.4e-09  Score=90.29  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=32.3

Q ss_pred             eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+....+ ++++.+++|+     +++|+||||||||||+ ++.++..
T Consensus         4 ~l~~~~~~~~~-~isl~i~~Ge-----i~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142         4 RFSKRLGDFSL-DADFTLPGQG-----VTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             EEEEEECCEEE-EEEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            34544432122 6788888777     8999999999999999 7777643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1.6e-08  Score=83.98  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=41.2

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632          6 VMIKVENVSFSYPNSENNALKNVSFEINEGE-----YVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             eEEEEEeEEEEcCCCCccceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            3677888887762   457889999998888     8999999999999999 777654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.64  E-value=6.7e-09  Score=84.33  Aligned_cols=47  Identities=13%  Similarity=0.000  Sum_probs=36.5

Q ss_pred             EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+...++.++++.+.+|+     .++|+||||+|||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299           3 VENLSKDWKEFKLKNVSLEVERGD-----YFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             eEeEEEEeCCceeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence            445555543336788999998888     8999999999999999 7777543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=3e-08  Score=82.61  Aligned_cols=50  Identities=12%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.    ..++.++++.+.+|+     +++|+||||+|||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl~~   58 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGE-----WVSIIGQNGSGKSTTARLIDGLFE   58 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence            566778887764    237889999999888     8999999999999999 7776543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.64  E-value=3e-08  Score=99.09  Aligned_cols=90  Identities=13%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      .+++++|++.+.    ..++.++++.+++|+     +++|+||||||||||+ ++.++.+            |.+|++  
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge-----~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i  444 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGK-----TYAFVGESGCGKSTILKLIERLYD------------PTEGDIII  444 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHHHhcc------------CCCCeEEE
Confidence            367788887764    358899999999888     8999999999999999 8888776            888874  


Q ss_pred             -CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcC
Q psy18088        103 -DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG  136 (166)
Q Consensus       103 -~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG  136 (166)
                       +|.+..-++...+++.   +.+..++...++.+| .||
T Consensus       445 ~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g  483 (1466)
T PTZ00265        445 NDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYS  483 (1466)
T ss_pred             eCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhc
Confidence             3555433444444332   233444445677777 454

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=2.1e-08  Score=82.72  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +....+++|.+.  ..++.++++.+.+|+     .++|+||||||||||+ +++++-.
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge-----~~~i~G~nGsGKSTL~~~l~GLl~   55 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKGE-----RVLLIGPNGSGKSTLLKLLNGLLK   55 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHcCcCc
Confidence            345667777764  467888999999888     8999999999999999 8877654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.64  E-value=2.7e-08  Score=80.58  Aligned_cols=46  Identities=9%  Similarity=-0.073  Sum_probs=37.3

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         2 ~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978         2 KIKDLHVSVEDKEILKGVNLTVKKGE-----IHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             eEeeEEEEECCEEEEeccceEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence            3456666553 457889999999888     8999999999999999 77775

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.64  E-value=2.6e-08  Score=77.76  Aligned_cols=57  Identities=25%  Similarity=0.291  Sum_probs=42.4

Q ss_pred             eeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         34 ILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        34 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      +++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+...            |.+|++  +|.+.
T Consensus         3 ~~l~~~~~~~~~l~~~~~~i~~G~-----~~~l~G~nGsGKStLl~~i~G~~~------------~~~G~v~~~g~~~   63 (180)
T cd03214           3 ENLSVGYGGRTVLDDLSLSIEAGE-----IVGILGPNGAGKSTLLKTLAGLLK------------PSSGEILLDGKDL   63 (180)
T ss_pred             eEEEEEECCeeeEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEC
Confidence            34555443 347788899998888     8999999999999999 7777654            667763  55543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.64  E-value=2e-08  Score=83.31  Aligned_cols=49  Identities=12%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+..
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPRGK-----ITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            567778887663 457788999999888     8999999999999999 777754

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.64  E-value=1.1e-08  Score=82.71  Aligned_cols=47  Identities=15%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~il~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~g~~~   51 (232)
T cd03300           3 LENVSKFYGGFVALDGVSLDIKEGE-----FFTLLGPSGCGKTTLLRLIAGFET   51 (232)
T ss_pred             EEeEEEEeCCeeeeccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            456666553 457889999999888     8999999999999999 7776543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=2e-08  Score=83.30  Aligned_cols=49  Identities=14%  Similarity=0.012  Sum_probs=39.8

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.-.
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSP-----VTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            45667777664 457889999999888     8999999999999999 7777543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.63  E-value=1.8e-08  Score=83.45  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             ceEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.          ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~Gl~~   64 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ-----TLAIIGENGSGKSTLAKMLAGMIE   64 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCC-----EEEEEcCCCCCHHHHHHHHhCCCC
Confidence            567888887663          357889999999888     8999999999999999 7777543

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.63  E-value=2.2e-08  Score=80.30  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             eEEeeecceee--------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC--------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.        ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE-----CVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45566776663        357889999999888     8999999999999999 777754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.5e-08  Score=85.49  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             ceEEeeecceee-----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.           ..++.++|+.|.+|+     +++|+|+||||||||+ +|.++.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK-----TLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHHcCC
Confidence            456777776663           457889999999888     8999999999999999 666654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.62  E-value=1.8e-08  Score=88.38  Aligned_cols=95  Identities=13%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc----ceeecCHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK----AYHFVTRAD  114 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~----~y~fvs~~~  114 (166)
                      ...+.++||.+++|+     +++|+||||||||||+ +|.++..            |..|++  +|.    +..-.+...
T Consensus        37 ~~~l~~vsf~i~~Ge-----i~~I~G~nGsGKSTLlr~L~Gl~~------------p~~G~I~idG~~~~~~i~~~~~~~   99 (382)
T TIGR03415        37 VVGVANASLDIEEGE-----ICVLMGLSGSGKSSLLRAVNGLNP------------VSRGSVLVKDGDGSIDVANCDAAT   99 (382)
T ss_pred             EEEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCEecccccccCCHHH
Confidence            556778899999888     8999999999999999 7777654            777764  553    221123222


Q ss_pred             HHH--------HHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088        115 MEE--------RIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       115 f~~--------~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~  153 (166)
                      ...        .+|...++++.++.+| .||     .+.    ..+.++++.++|.+
T Consensus       100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~  156 (382)
T TIGR03415       100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ  156 (382)
T ss_pred             HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            221        2455567777888877 333     333    23456677777764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.62  E-value=2e-08  Score=79.52  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGG-----LLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            44567776653 457889999999888     8999999999999999 7777653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.62  E-value=1e-08  Score=91.91  Aligned_cols=50  Identities=14%  Similarity=0.020  Sum_probs=41.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   55 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAGQ-----VHALMGENGAGKSTLLKILSGNYQ   55 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            466778887764 457889999999888     8999999999999999 7777543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.62  E-value=2e-08  Score=90.47  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=73.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      +++..++++.|. +.++++.++.|++||     +.+|+|-+|+|||||+ ++.+...            |.+|+  ++|+
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~GE-----V~aL~GeNGAGKSTLmKiLsGv~~------------p~~G~I~~~G~   70 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRPGE-----VHALLGENGAGKSTLMKILSGVYP------------PDSGEILIDGK   70 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeCce-----EEEEecCCCCCHHHHHHHHhCccc------------CCCceEEECCE
Confidence            677889999995 899999999999999     7999999999999999 8877654            88998  4898


Q ss_pred             ceeecCHHHHHHH-----HHcCCccceeeehhhh
Q psy18088        106 AYHFVTRADMEER-----IAAGEFLEHAEFAANL  134 (166)
Q Consensus       106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn~  134 (166)
                      .+.|.+..+-.+.     .|.-.+++..++..|.
T Consensus        71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNi  104 (500)
T COG1129          71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENI  104 (500)
T ss_pred             EccCCCHHHHHhCCcEEEeechhccCCccHHHHh
Confidence            8888777665442     4555688888888883

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.62  E-value=2.7e-08  Score=81.13  Aligned_cols=51  Identities=14%  Similarity=-0.023  Sum_probs=42.8

Q ss_pred             hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      |..++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131          4 NKPILEIKNLHASVNENEILKGLNLSINKGE-----IHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             CCceEEEEeEEEEeCCEEeeecceeEEcCCc-----EEEEECCCCCCHHHHHHHHcCC
Confidence            444678888887774 468889999999888     8999999999999999 77774

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.62  E-value=5.2e-08  Score=79.87  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      +..++++|.-. ..++++.|+..+.||     +++|+||+|+|||||+ .+.+.-.            |..|++  +|++
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~pGe-----v~ailGPNGAGKSTlLk~LsGel~------------p~~G~v~~~g~~   64 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRPGE-----VLAILGPNGAGKSTLLKALSGELS------------PDSGEVTLNGVP   64 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccCCc-----EEEEECCCCccHHHHHHHhhCccC------------CCCCeEeeCCcC
Confidence            34567788774 778899999999999     8999999999999999 7777665            888874  6766


Q ss_pred             eeecCHHHHH
Q psy18088        107 YHFVTRADME  116 (166)
Q Consensus       107 y~fvs~~~f~  116 (166)
                      ..-.+..++-
T Consensus        65 l~~~~~~~lA   74 (259)
T COG4559          65 LNSWPPEELA   74 (259)
T ss_pred             hhhCCHHHHH
Confidence            5444444443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.62  E-value=2.6e-08  Score=79.13  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~~s~~i~~G~-----~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262           3 IKNLHKSFGDFHVLKGIDLTVKKGE-----VVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             EEEEEEEECCeEeecCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456665553 457788999998888     8999999999999999 7777543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.61  E-value=3.7e-08  Score=81.71  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             ceEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.          ..++.++++.+++|+     +++|+||||||||||+ +|.+...
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE-----TVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            355667776664          457889999999888     8999999999999999 7777643

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.61  E-value=1.7e-08  Score=81.86  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         2 ~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         2 KGVNLTIQQGE-----FISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778888788     8999999999999999 7777643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.60  E-value=2.6e-08  Score=81.15  Aligned_cols=50  Identities=14%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGE-----VVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            456777777664 457889999999888     8999999999999999 7776543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.60  E-value=2.1e-08  Score=79.89  Aligned_cols=45  Identities=16%  Similarity=0.118  Sum_probs=35.8

Q ss_pred             eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235           4 DLTVSYGGHPVLEDVSFEVKPGE-----FLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             cceeEECCEEeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            4554442 457788999998888     8999999999999999 7777643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=2.7e-08  Score=83.32  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .+++++++.+.      ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGK-----YYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            45667777763      258899999999888     8999999999999999 7777654

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.7e-08  Score=78.04  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCH---HHHH
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTR---ADME  116 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~---~~f~  116 (166)
                      ..+.+++|.+..||     ++.|.||+|+|||||+ +++++-.            |.+|++  +|.....+..   +.+.
T Consensus        16 ~lf~~L~f~l~~Ge-----~~~i~G~NG~GKTtLLRilaGLl~------------p~~G~v~~~~~~i~~~~~~~~~~l~   78 (209)
T COG4133          16 TLFSDLSFTLNAGE-----ALQITGPNGAGKTTLLRILAGLLR------------PDAGEVYWQGEPIQNVRESYHQALL   78 (209)
T ss_pred             eeecceeEEEcCCC-----EEEEECCCCCcHHHHHHHHHcccC------------CCCCeEEecCCCCccchhhHHHHHH
Confidence            44567788888888     8999999999999999 8888776            889986  3332211111   1222


Q ss_pred             HHHHcCCccceeeehhh------hcC-CChHHHHHHHhhccCC
Q psy18088        117 ERIAAGEFLEHAEFAAN------LYG-TSQCGRQNGRNYLIFN  152 (166)
Q Consensus       117 ~~~~~~~fle~~~~~gn------~yG-~~~~~I~~ile~v~L~  152 (166)
                      ++-.+..+=.-.+..+|      .+| .+.+.+.++++.|+|.
T Consensus        79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~  121 (209)
T COG4133          79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA  121 (209)
T ss_pred             HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc
Confidence            22222222222333333      456 4667899999988876

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.2e-08  Score=81.24  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=41.0

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ +|.+...
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge-----~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQ-----WTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            567788887764   237888999999888     8999999999999999 7777543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.58  E-value=2.3e-08  Score=82.19  Aligned_cols=50  Identities=18%  Similarity=0.043  Sum_probs=41.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGE-----VLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            577888887764 457788999999888     8999999999999999 7777543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=3.2e-08  Score=83.05  Aligned_cols=49  Identities=20%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.      ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~v~i~G~nGsGKSTLl~~l~Gl~~   57 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGS-----YTALIGHTGSGKSTLLQHLNGLLQ   57 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCC-----EEEEECCCCChHHHHHHHHhcCCC
Confidence            55677777764      147889999999888     8999999999999999 8877654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.58  E-value=4e-08  Score=79.48  Aligned_cols=47  Identities=15%  Similarity=0.102  Sum_probs=36.4

Q ss_pred             Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.   ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252           3 FEHVRFRYKPDGPVILDNISLRIKPGE-----VVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             EEEEEEecCCCCccceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcC
Confidence            445555542   346778888988888     8999999999999999 7776543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.58  E-value=3.3e-08  Score=80.81  Aligned_cols=50  Identities=16%  Similarity=0.035  Sum_probs=40.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGCRDVSFDLYPGE-----VLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             eEEEeeeEEEeCCceEeecceEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456777777763 456788999999888     8999999999999999 7777643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.57  E-value=6.4e-08  Score=78.67  Aligned_cols=47  Identities=13%  Similarity=-0.038  Sum_probs=38.5

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGE-----VHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHcCC
Confidence            45667777664 457888999998888     8999999999999999 77775

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.57  E-value=3.4e-08  Score=77.25  Aligned_cols=47  Identities=15%  Similarity=0.067  Sum_probs=38.5

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+   ++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~---~l~~vs~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215           4 VLEVRGLSVKG---AVRDVSFEVRAGE-----IVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             EEEEeccEEEe---eecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777666   7778899998888     8999999999999999 7777654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.57  E-value=5.1e-08  Score=75.66  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=36.0

Q ss_pred             Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.   ..++.+.++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246           3 VENVSFRYPGAEPPVLRNVSFSIEPGE-----SLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             EEEEEEEcCCCCCcceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHHhccC
Confidence            445555543   346778888888888     8999999999999999 7776543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.57  E-value=3.3e-08  Score=76.33  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=36.6

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+++||     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~vl~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216           3 LRGITKRFGGVKALDGVSLSVRRGE-----VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEEEEECCeEEEeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            455665553 357788899999888     8999999999999999 777654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=3.3e-08  Score=83.05  Aligned_cols=49  Identities=20%  Similarity=0.177  Sum_probs=40.1

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.      ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGS-----YVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence            45677777763      358889999999888     8999999999999999 7776543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.56  E-value=2.3e-08  Score=81.33  Aligned_cols=46  Identities=13%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.+.++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 i~~l~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968         3 IANISKRFGSFQALDDVNLEVPTGS-----LVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             EEEEEEEECCeeeeeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            445555442 457788888888888     8999999999999999 666653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.56  E-value=5e-08  Score=77.46  Aligned_cols=51  Identities=22%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.++++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGE-----KIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence            3466777777664   257889999998888     8999999999999999 7776543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.4e-08  Score=82.91  Aligned_cols=49  Identities=14%  Similarity=0.010  Sum_probs=40.5

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++++++++.+.  ..++.+.++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGS-----IAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            466778887763  457788999999888     8999999999999999 777754

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.56  E-value=5.7e-08  Score=75.27  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             Eeeecceeee---cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTCI---SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+..   .++.++++.+++|+     +++|+||+|+|||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~-----~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228           3 FKNVSFSYPGRPKPVLKDVSLTIKPGE-----KVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEEEEEcCCCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCC
Confidence            4455555532   57888899998888     8999999999999999 777654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.6e-08  Score=90.37  Aligned_cols=45  Identities=16%  Similarity=0.086  Sum_probs=35.7

Q ss_pred             eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 nl~~~~~~~~il~~vs~~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~   49 (491)
T PRK10982          3 NISKSFPGVKALDNVNLKVRPHS-----IHALMGENGAGKSTLLKCLFGIYQ   49 (491)
T ss_pred             ceEEEeCCEEeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            3444442 457888999999888     8999999999999999 7777543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.56  E-value=2e-08  Score=80.75  Aligned_cols=35  Identities=17%  Similarity=0.003  Sum_probs=29.5

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 l~~vs~~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177          3 LDKTDFVMGYHE-----HIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             eeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcc
Confidence            457788888888     8999999999999999 7777543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.55  E-value=5.2e-08  Score=83.61  Aligned_cols=49  Identities=18%  Similarity=0.111  Sum_probs=40.7

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.     ..++.++|+.|.+||     +++|+|+||||||||+ +|.+..
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE-----TLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC-----EEEEECCCCchHHHHHHHHHcCC
Confidence            567778887663     467889999999888     8999999999999999 666654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=4.7e-08  Score=79.89  Aligned_cols=49  Identities=14%  Similarity=0.058  Sum_probs=40.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNG-----VFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence            466778887764 457889999999888     8999999999999999 777653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.54  E-value=9e-08  Score=75.99  Aligned_cols=45  Identities=11%  Similarity=-0.040  Sum_probs=36.3

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217           3 IKDLHVSVGGKEILKGVNLTIKKGE-----VHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             EEEEEEEeCCEEeeeccceEECCCc-----EEEEECCCCCCHHHHHHHHhCC
Confidence            445555442 457889999999888     8999999999999999 77776

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.54  E-value=4.5e-08  Score=77.56  Aligned_cols=47  Identities=17%  Similarity=0.035  Sum_probs=37.6

Q ss_pred             Eeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++|++.+.      ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~-----~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250           3 VEDASFTWDSGEQETSFTLKDINLEVPKGE-----LVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             EeEEEEecCCCCccccceeeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhCcCC
Confidence            456665553      257889999999888     8999999999999999 7777654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.54  E-value=6.4e-08  Score=77.64  Aligned_cols=47  Identities=17%  Similarity=0.064  Sum_probs=37.0

Q ss_pred             EEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         32 VRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        32 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++.+.     ..++.++++.+++|+     +++|+||||+|||||+ ++.+..
T Consensus         3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~-----~~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982         3 SIRNLNHYYGHGSLRKQVLFDINLEINPGE-----IVILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             EEEEEEEEccCCCcceeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            3455665542     457888999998888     8999999999999999 777654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.54  E-value=1.8e-08  Score=79.48  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=37.9

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+.     ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGT-----LTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCc-----EEEEECCCCCCHHHHHHHHhCC
Confidence            345667766653     357788888988888     8999999999999999 77763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=4.6e-08  Score=81.87  Aligned_cols=50  Identities=10%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             CceEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++++.+..      .++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNK-----VTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            35677788877642      37889999999888     8999999999999999 666643

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.53  E-value=2.3e-08  Score=81.40  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=46.2

Q ss_pred             eEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         31 TVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        31 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      ++...+++.+  .+++.++.+|.+++|+     +++|+||+|+||||++ +|+.+-.            |..|+  ++|.
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~Ge-----i~GlLG~NGAGKTT~LRmiatlL~------------P~~G~v~idg~   64 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEEGE-----ITGLLGENGAGKTTLLRMIATLLI------------PDSGKVTIDGV   64 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEeccce-----EEEEEcCCCCCchhHHHHHHHhcc------------CCCceEEEeec
Confidence            3444556555  3668899999999988     8999999999999999 8887665            77776  3665


Q ss_pred             c
Q psy18088        106 A  106 (166)
Q Consensus       106 ~  106 (166)
                      +
T Consensus        65 d   65 (245)
T COG4555          65 D   65 (245)
T ss_pred             c
Confidence            5

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.53  E-value=2.7e-08  Score=79.45  Aligned_cols=43  Identities=12%  Similarity=-0.011  Sum_probs=32.4

Q ss_pred             eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +|++.+.-... +.++.+++ +     +++|+||||||||||+ ++.+...
T Consensus         5 ~l~~~~~~~~~-~vsl~i~~-e-----~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297           5 DIEKRLPDFTL-KIDFDLNE-E-----VTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eeeEecCCeee-CceEEEcc-e-----eEEEECCCCCCHHHHHHHHhCCCC
Confidence            45555542222 88888887 7     8999999999999999 7776543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=4.4e-08  Score=82.19  Aligned_cols=49  Identities=18%  Similarity=0.131  Sum_probs=39.3

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++|++.+.      ..++.++|+.+.+|+     +++|+||||||||||+ ++.+.-.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGE-----FVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence            45667777663      247888999999888     8999999999999999 7776543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=4.9e-08  Score=81.83  Aligned_cols=49  Identities=14%  Similarity=0.168  Sum_probs=39.4

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.      ..++.++++.+++|+     +++|+||||+|||||+ +|.+.-.
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~iiG~NGaGKSTLl~~l~Gl~~   58 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGS-----FVALVGHTGSGKSTLMQHFNALLK   58 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            45667777664      247889999999888     8999999999999999 7777543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=5.2e-08  Score=81.50  Aligned_cols=50  Identities=22%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.  ..++.++++.+++||     +++|+||||+|||||+ ++.+...
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKKGE-----VTAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            567788887773  458889999999888     8999999999999999 7777653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.53  E-value=7.3e-08  Score=77.70  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=36.3

Q ss_pred             Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+.   ..++.+.++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251           3 FKNVTFRYPGDGPPVLRDISLDIPAGE-----TVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EEEEEEEeCCCCccceeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence            445555553   257788899998888     8999999999999999 777654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.53  E-value=5.1e-08  Score=80.04  Aligned_cols=49  Identities=12%  Similarity=-0.012  Sum_probs=40.1

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++++++++.+...++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~l~~~~l~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418          4 QIELRNIALQAAQPLVHGVSLTLQRGR-----VLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEEEeCeEEEeccceecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            456777777664457888999999888     8999999999999999 777653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=6.3e-08  Score=82.91  Aligned_cols=48  Identities=13%  Similarity=-0.002  Sum_probs=39.0

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+.     ..++.++||.+++||     +++|+||||||||||+ ++.++
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGE-----VVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcC
Confidence            356677776663     357889999999998     8999999999999999 66554

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=4.6e-08  Score=81.35  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.      ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGS-----YTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45667776663      247888999999888     8999999999999999 777754

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.52  E-value=1.4e-07  Score=77.42  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .+.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus        11 ~l~~vsl~i~~Ge-----i~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         11 RLGPLSAEVRAGE-----ILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             eecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence            5678888998888     8999999999999999 777654

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.52  E-value=5.1e-08  Score=76.00  Aligned_cols=46  Identities=13%  Similarity=0.100  Sum_probs=35.8

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||+|||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~l~~i~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229           3 LKNVSKRYGQKTVLNDVSLNIEAGE-----IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEEEEECCeEEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            445555443 356788899998888     8999999999999999 666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=5.1e-08  Score=81.34  Aligned_cols=50  Identities=12%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             ceEEeeecceee-------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.       ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   61 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGE-----FLVILGRNGSGKSTIAKHMNALLI   61 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            567778888774       358889999999888     8999999999999999 7777643

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.52  E-value=6.3e-08  Score=78.99  Aligned_cols=48  Identities=19%  Similarity=0.038  Sum_probs=38.2

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQ-----VTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence            34567766653 457788999999888     8999999999999999 776654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.52  E-value=5.6e-08  Score=75.45  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=36.2

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230           3 VRNLSKRYGKKTALDDISLTVEKGE-----IYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEEEEEECCeeeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            445555543 357788899998888     8999999999999999 777654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=5.6e-08  Score=80.92  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.  ..++.++++.+++||     +++|+||||||||||+ ++.+.-
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGE-----MVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45667777763  357889999999888     8999999999999999 776654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=5.8e-08  Score=82.41  Aligned_cols=48  Identities=23%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             eEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++.+..      .++.++++.|++|+     +++|+||||||||||+ ++.+.-
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGE-----FIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence            556778877742      47889999999888     8999999999999999 777754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.50  E-value=7.1e-08  Score=74.66  Aligned_cols=47  Identities=19%  Similarity=0.075  Sum_probs=36.6

Q ss_pred             Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223           3 LENLSLATPDGRVLLKDLSFEIKPGD-----RLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             EEEEEEEcCCCCeeeecCeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            445555542  357788899998888     8999999999999999 7776543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.50  E-value=7.7e-08  Score=77.34  Aligned_cols=48  Identities=17%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.  ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGE-----TVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence            45667776663  357889999998888     8999999999999999 766654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.50  E-value=4.4e-08  Score=82.97  Aligned_cols=54  Identities=17%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             EEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecCHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADM  115 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f  115 (166)
                      +|+|+||+|||||+|.  |...+..        .+....+++|++|+++|.+|++||+++.-++
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~   64 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDP   64 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEech
Confidence            3799999999999999  6555442        1334557889999999999999999875443

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=6.1e-08  Score=80.72  Aligned_cols=49  Identities=20%  Similarity=0.127  Sum_probs=39.5

Q ss_pred             eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.  ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   53 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGE-----YIGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            45667776662  458889999999888     8999999999999999 7777543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.1e-07  Score=81.46  Aligned_cols=48  Identities=15%  Similarity=-0.031  Sum_probs=39.4

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+.     ..++.++|+.|++||     +++|+||||||||||+ +|.+.
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge-----~~~ivG~sGsGKSTLl~~i~Gl   56 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGE-----IRGLVGESGSGKSLIAKAICGV   56 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHHcc
Confidence            456778877662     457889999999888     8999999999999999 66654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.49  E-value=8.8e-08  Score=75.82  Aligned_cols=48  Identities=15%  Similarity=-0.021  Sum_probs=38.8

Q ss_pred             eEEeeecceee-------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.       ..++.+.++.+++|+     .++|+||||||||||+ ++.+..
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge-----~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE-----LTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            35667776663       458889999998888     8999999999999999 777654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.49  E-value=8.3e-08  Score=85.64  Aligned_cols=50  Identities=16%  Similarity=0.068  Sum_probs=42.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~G~~~   54 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGD-----SWAFVGANGSGKSALARALAGELP   54 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC
Confidence            567788888874 458889999999888     8999999999999999 7777543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=7.8e-08  Score=89.01  Aligned_cols=49  Identities=22%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++||.|.+|+     .++|+||||||||||+ +|.+..
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge-----~v~LvG~NGsGKSTLLkiL~G~~   51 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQ-----KVGLVGKNGCGKSTLLALLKNEI   51 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            356778888885 458889999999888     8999999999999999 777753

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=8.1e-08  Score=79.54  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHH
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEE  117 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~  117 (166)
                      ...++.|+||.+.+||     .++|+|++|||||||+ ||++...            |..|++  +|.=-   +.-++. 
T Consensus        39 ~~~aL~disf~i~~Ge-----~vGiiG~NGaGKSTLlkliaGi~~------------Pt~G~v~v~G~v~---~li~lg-   97 (249)
T COG1134          39 EFWALKDISFEIYKGE-----RVGIIGHNGAGKSTLLKLIAGIYK------------PTSGKVKVTGKVA---PLIELG-   97 (249)
T ss_pred             eEEEecCceEEEeCCC-----EEEEECCCCCcHHHHHHHHhCccC------------CCCceEEEcceEe---hhhhcc-
Confidence            5788999999999999     8999999999999999 9988664            888874  55310   011111 


Q ss_pred             HHHcCCccceeee------hhhhcCCChHHHHHHHh
Q psy18088        118 RIAAGEFLEHAEF------AANLYGTSQCGRQNGRN  147 (166)
Q Consensus       118 ~~~~~~fle~~~~------~gn~yG~~~~~I~~ile  147 (166)
                          ..|-+..+-      .+-.+|.++.++++..+
T Consensus        98 ----~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~  129 (249)
T COG1134          98 ----AGFDPELTGRENIYLRGLILGLTRKEIDEKVD  129 (249)
T ss_pred             ----cCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence                123333333      33367888877666555

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.48  E-value=7.1e-08  Score=77.25  Aligned_cols=50  Identities=22%  Similarity=0.240  Sum_probs=40.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.+.++.+.+|+     .++|+||||||||||+ ++.+...
T Consensus        11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         11 LLAAHALAFSRNEEPVFGPLDFHVDAGE-----ALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             eEEEeeEEEecCCceeeecceEEECCCC-----EEEEEcCCCCCHHHHHHHHhCCCC
Confidence            567778887663 457888999998888     8999999999999999 7776543

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.48  E-value=7.3e-08  Score=79.14  Aligned_cols=50  Identities=18%  Similarity=0.084  Sum_probs=40.8

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+..
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAGD-----VISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            3566778877663 457888999999888     8999999999999999 777654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.48  E-value=6.8e-08  Score=75.19  Aligned_cols=47  Identities=17%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             Eeeecceeee---cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTCI---SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+..   .++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247           3 INNVSFSYPEQEQQVLKNLSLELKQGE-----KIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EEEEEEEeCCCCccceEEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC
Confidence            4455555432   47778899998888     8999999999999999 7777643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.48  E-value=9.9e-08  Score=76.25  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=37.6

Q ss_pred             eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+.-
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~-----~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGE-----KVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence            34556666553   347888999998888     8999999999999999 776653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=8.5e-08  Score=78.52  Aligned_cols=52  Identities=23%  Similarity=0.144  Sum_probs=42.4

Q ss_pred             hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +..+++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273          4 NEAIIETENLNLFYTDFKALNNINIKILKNS-----ITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CCceEEEeeeEEEeCCceeecceeeEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence            344677888887764 457889999999888     8999999999999999 776643

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.47  E-value=1.1e-07  Score=78.23  Aligned_cols=50  Identities=16%  Similarity=-0.002  Sum_probs=40.8

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++++++.+.   ..++.++++.+++|+     +++|+||||+|||||+ ++.+..
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQ-----KVGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHccc
Confidence            4577778877664   357888899998888     8999999999999999 777654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.47  E-value=7.2e-08  Score=73.13  Aligned_cols=47  Identities=19%  Similarity=0.048  Sum_probs=35.9

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+...
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~~~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221           3 LENLSKTYGGKLLLKDISLTINPGD-----RIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             EEEEEEEECCceEEEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence            445555442 356778888888888     8999999999999999 7777654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.47  E-value=5.1e-08  Score=76.53  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=51.2

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCH--HHHHHH
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTR--ADMEER  118 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~--~~f~~~  118 (166)
                      .+.+++++|.+||     ++.|+||||||||||+ .+.+.-.   ...++      .|+  +++.+...+..  ....-+
T Consensus        17 LLa~~n~Tia~Ge-----ivtlMGPSGcGKSTLls~~~G~La---~~F~~------~G~~~l~~~~l~~lPa~qRq~GiL   82 (213)
T COG4136          17 LLANVNFTIAKGE-----IVTLMGPSGCGKSTLLSWMIGALA---GQFSC------TGELWLNEQRLDMLPAAQRQIGIL   82 (213)
T ss_pred             EEEeeeEEecCCc-----EEEEECCCCccHHHHHHHHHhhcc---cCcce------eeEEEECCeeccccchhhhheeee
Confidence            3557889999898     8999999999999999 5554322   11111      133  34444333332  224445


Q ss_pred             HHcCCccceeeehhh-hcCCC
Q psy18088        119 IAAGEFLEHAEFAAN-LYGTS  138 (166)
Q Consensus       119 ~~~~~fle~~~~~gn-~yG~~  138 (166)
                      +|..-+.++..+.+| .+.++
T Consensus        83 FQD~lLFphlsVg~Nl~fAlp  103 (213)
T COG4136          83 FQDALLFPHLSVGQNLLFALP  103 (213)
T ss_pred             ecccccccccccccceEEecC
Confidence            677777888888887 34443

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.47  E-value=6e-08  Score=79.95  Aligned_cols=49  Identities=6%  Similarity=0.066  Sum_probs=40.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+.-
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge-----~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGK-----ILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            566778877764 457778899998888     8999999999999999 777754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=8.1e-08  Score=82.11  Aligned_cols=50  Identities=12%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.      ..++.++++.+++|+     +++|+||||||||||+ ++.++..
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~L~Gl~~   77 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNK-----IYFIIGNSGSGKSTLVTHFNGLIK   77 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            577888888764      248889999999888     8999999999999999 7777654

>PLN03130 ABC transporter C family member; Provisional

Probab=98.46  E-value=1.4e-07  Score=95.11  Aligned_cols=96  Identities=19%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             eEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCC-CccC-
Q psy18088         31 TVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRP-GEVD-  103 (166)
Q Consensus        31 ~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~-ge~~-  103 (166)
                      .+++++++.+.    ..++.++++.+++|+     .++|+||||||||||+ ++.+...            |.+ |++. 
T Consensus       615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge-----~vaIvG~sGSGKSTLl~lLlG~~~------------~~~GG~I~l  677 (1622)
T PLN03130        615 ISIKNGYFSWDSKAERPTLSNINLDVPVGS-----LVAIVGSTGEGKTSLISAMLGELP------------PRSDASVVI  677 (1622)
T ss_pred             eEEEeeEEEccCCCCCceeeceeEEecCCC-----EEEEECCCCCCHHHHHHHHHHhhc------------cCCCceEEE
Confidence            56667776653    346888999998888     8999999999999999 5555443            666 5531 


Q ss_pred             -C-cceeecCHHHHHHHHHcCCccceeeehhh-hcCCC--hHHHHHHHhhccCChh
Q psy18088        104 -G-KAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS--QCGRQNGRNYLIFNTL  154 (166)
Q Consensus       104 -G-~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~--~~~I~~ile~v~L~~~  154 (166)
                       + ..|           ..|..++..+++.+| .+|.+  .+.++++++.+.|.+.
T Consensus       678 ~~~Iay-----------v~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~d  722 (1622)
T PLN03130        678 RGTVAY-----------VPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD  722 (1622)
T ss_pred             cCeEEE-----------EcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHH
Confidence             1 122           234467788899999 56754  5678888887777654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.46  E-value=9e-08  Score=77.45  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=36.0

Q ss_pred             Eeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         33 RILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        33 ~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++.+.    ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249           3 FKNVSFRYPSRPDVPILKGLSLTIPPGK-----TVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             EEEEEEecCCCCCccceeceEEEecCCC-----EEEEEeCCCCCHHHHHHHHhccC
Confidence            445555442    347788899998888     8999999999999999 777764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.46  E-value=8.1e-08  Score=76.47  Aligned_cols=48  Identities=15%  Similarity=0.123  Sum_probs=38.3

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..+++++|.+.     ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGE-----MVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECCCc-----EEEEECCCCCCHHHHHHHhcccC
Confidence            45567776662     457788888998888     8999999999999999 777653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.46  E-value=1.3e-07  Score=76.28  Aligned_cols=47  Identities=17%  Similarity=0.107  Sum_probs=36.5

Q ss_pred             Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++.+.  ..++.++++.+.+|+     +++|+||+|||||||+ +|.+...
T Consensus         3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253           3 FENVTFAYDPGRPVLKDVSFTIPAGK-----KVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             EEEEEEEeCCCCceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence            445555542  347788888988888     8999999999999999 7777543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.46  E-value=2.5e-07  Score=85.92  Aligned_cols=50  Identities=16%  Similarity=0.008  Sum_probs=41.2

Q ss_pred             CceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +..+++++++.+  ...++.++++.+++|+     .++|+||||||||||+ ++.+..
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge-----~~~IvG~nGsGKSTLl~lL~Gl~  502 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGN-----HLLICGPNGCGKSSLFRILGELW  502 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            457788888765  2357889999999888     8999999999999999 777754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.46  E-value=9.4e-08  Score=86.89  Aligned_cols=49  Identities=14%  Similarity=0.006  Sum_probs=41.8

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.  ..++.++++.|.+|+     +++|+||||||||||+ +|.+.-
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge-----~~~iiG~NGsGKSTLlk~i~G~~   57 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFPGA-----KIGVLGLNGAGKSTLLRIMAGVD   57 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            577888888774  568899999999888     8999999999999999 777653

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.45  E-value=8.7e-09  Score=76.14  Aligned_cols=33  Identities=27%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.++.+.+|+     +++|+||+|||||||+ ++.+...
T Consensus         3 ~v~~~i~~g~-----~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    3 NVSLEIKPGE-----IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEEETTS-----EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             ceEEEEcCCC-----EEEEEccCCCccccceeeeccccc
Confidence            4456666666     8999999999999999 6666543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.45  E-value=9.9e-08  Score=78.39  Aligned_cols=48  Identities=17%  Similarity=0.058  Sum_probs=40.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRS-----VTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence            466788888774 567889999999888     8999999999999999 77764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.5e-07  Score=76.82  Aligned_cols=46  Identities=17%  Similarity=0.112  Sum_probs=37.3

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269          4 KTTNLNLFYGKKQALFDINMQIEQNK-----ITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             eeeeeEEEECCEeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            3556666663 457788999998888     8999999999999999 77765

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.45  E-value=9.5e-08  Score=78.69  Aligned_cols=43  Identities=26%  Similarity=0.256  Sum_probs=34.4

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ...++++++.+..+.+..+.+++|+||||||||||+ ++.+...
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            345566677777777778889999999999999999 7777543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.2e-07  Score=85.60  Aligned_cols=48  Identities=15%  Similarity=0.059  Sum_probs=39.8

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++.++++.+. ..++.++|+.+.+|+     +++|+||||||||||+ ++.+.-
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~Gl~   51 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGN-----RYGLIGANGCGKSTFMKILGGDL   51 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45677787774 457889999999888     8999999999999999 777653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.44  E-value=7.8e-08  Score=78.19  Aligned_cols=37  Identities=24%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++.++++.+++|+     +++|+||||||||||+ +|.+..
T Consensus        34 ~~il~~vs~~i~~Ge-----~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          34 VEALKGISFTIEKGE-----IVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             eeeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            347788899998888     8999999999999999 777654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.44  E-value=8.6e-08  Score=75.16  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++.++++.+++|+     +++|+||||||||||+ ++.+...
T Consensus         6 ~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166         6 EVLKGLNFAAERGE-----VLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             ceecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            46778889998888     8999999999999999 7776543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-07  Score=87.11  Aligned_cols=50  Identities=18%  Similarity=0.017  Sum_probs=41.3

Q ss_pred             CceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .+++++++++.+.            ..++.++||.|++|+     +++|+||||||||||+ +|.+.-
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~lvG~nGsGKSTLlk~i~Gl~  374 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE-----TLSLVGESGSGKSTTGRALLRLV  374 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC-----EEEEECCCCCCHHHHHHHHHcCC
Confidence            3678888887763            357889999999888     8999999999999999 766654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.44  E-value=9.9e-08  Score=81.00  Aligned_cols=82  Identities=17%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce------eecC--HHHHHHHHHcCCccceee
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY------HFVT--RADMEERIAAGEFLEHAE  129 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y------~fvs--~~~f~~~~~~~~fle~~~  129 (166)
                      .+.+|.|+||||||||+ +|+++-.            |.+|++  ||.-.      .|+.  +..+.+.+|.-.++++.+
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~r------------PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t   92 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTR------------PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT   92 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCC------------ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence            68999999999999999 9999775            878864  65421      2233  333566788889999999


Q ss_pred             ehhh-hcCCCh---HHHHHHHhhccCChh
Q psy18088        130 FAAN-LYGTSQ---CGRQNGRNYLIFNTL  154 (166)
Q Consensus       130 ~~gn-~yG~~~---~~I~~ile~v~L~~~  154 (166)
                      +.+| .||...   +..+++++.+++++.
T Consensus        93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hL  121 (352)
T COG4148          93 VRGNLRYGMWKSMRAQFDQLVALLGIEHL  121 (352)
T ss_pred             EecchhhhhcccchHhHHHHHHHhCcHHH
Confidence            9999 689764   567888888876643

>PLN03232 ABC transporter C family member; Provisional

Probab=98.44  E-value=2.4e-07  Score=92.87  Aligned_cols=97  Identities=14%  Similarity=0.053  Sum_probs=68.0

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      -.+++++++.+.    ..++.++++.+++|+     .++|+||||||||||+ ++.+...            |.+|.+  
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge-----~vaIvG~sGSGKSTLl~lLlG~~~------------~~~G~i~~  676 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGS-----LVAIVGGTGEGKTSLISAMLGELS------------HAETSSVV  676 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCc------------ccCCCEEE
Confidence            356777776653    346889999999888     8999999999999999 6665443            555532  


Q ss_pred             -C-CcceeecCHHHHHHHHHcCCccceeeehhh-hcCC--ChHHHHHHHhhccCChh
Q psy18088        103 -D-GKAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGT--SQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       103 -~-G~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~--~~~~I~~ile~v~L~~~  154 (166)
                       . .+.|           ..|..++..+++.+| .+|.  +.+.++++++.+.|.+.
T Consensus       677 ~~~~Iay-----------v~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~d  722 (1495)
T PLN03232        677 IRGSVAY-----------VPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD  722 (1495)
T ss_pred             ecCcEEE-----------EcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence             1 1122           234466778899998 5665  45678888887776654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.4e-07  Score=76.99  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=39.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQ-----VTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            466778887763 457888999999888     8999999999999999 77764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.41  E-value=2.2e-07  Score=83.81  Aligned_cols=49  Identities=14%  Similarity=0.037  Sum_probs=40.6

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.     ..++.++++.+.+||     +++|+||||||||||+ ++.+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~i~G~~   59 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGE-----TLALVGESGSGKSVTALSILRLL   59 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence            566778887773     468899999999888     8999999999999999 666643

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.41  E-value=3e-07  Score=82.99  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             ceEEeeeccee---eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088         30 ITVRILLNYRT---CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD  103 (166)
Q Consensus        30 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~  103 (166)
                      .+..+.+++-.   ....+.+++|.+..|+     .++|+||||||||||. ++-+.-.            |..|.  .|
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~-----~lgIIGPSgSGKSTLaR~lvG~w~------------p~~G~VRLD  396 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGE-----ALGIIGPSGSGKSTLARLLVGIWP------------PTSGSVRLD  396 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCc-----eEEEECCCCccHHHHHHHHHcccc------------cCCCcEEec
Confidence            44455555533   2456778899999888     8999999999999999 5555432            77775  48


Q ss_pred             CcceeecCHHHHHHH----HHcCCccceeeehhh
Q psy18088        104 GKAYHFVTRADMEER----IAAGEFLEHAEFAAN  133 (166)
Q Consensus       104 G~~y~fvs~~~f~~~----~~~~~fle~~~~~gn  133 (166)
                      |-++.-.++++|.+.    .|.-++ .-+++..|
T Consensus       397 ga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeN  429 (580)
T COG4618         397 GADLRQWDREQLGRHIGYLPQDVEL-FDGTIAEN  429 (580)
T ss_pred             chhhhcCCHHHhccccCcCccccee-cCCcHHHH
Confidence            888887888888653    344444 44788888

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.4e-07  Score=77.89  Aligned_cols=50  Identities=12%  Similarity=0.022  Sum_probs=41.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.++++++.+. ..++.++++.+.+|+     +++|+||+|+|||||+ +|.+...
T Consensus        10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         10 VFNISRLYLYINDKAILKDITIKIPNNS-----IFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             heeeeeEEEecCCceeEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            566778887774 457889999998888     8999999999999999 8887653

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.41  E-value=3.1e-07  Score=73.01  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeec
Q psy18088         35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFV  110 (166)
Q Consensus        35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fv  110 (166)
                      ++++-+. .+++-++.+.-..|+     .++++||||+|||||+ .++.+.-            |++|+.  .|..+.|-
T Consensus         7 ~in~~yg~~q~lfdi~l~~~~ge-----tlvllgpsgagkssllr~lnlle~------------p~sg~l~ia~~~fd~s   69 (242)
T COG4161           7 GINCFYGAHQALFDITLDCPEGE-----TLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS   69 (242)
T ss_pred             ccccccccchheeeeeecCCCCC-----EEEEECCCCCchHHHHHHHHHHhC------------CCCCeEEecccccccc
Confidence            4444443 455555555555566     8999999999999999 7776665            788873  44444332


Q ss_pred             ---CHHHH-------HHHHHcCCccceeeehhhh
Q psy18088        111 ---TRADM-------EERIAAGEFLEHAEFAANL  134 (166)
Q Consensus       111 ---s~~~f-------~~~~~~~~fle~~~~~gn~  134 (166)
                         +...+       ...+++..+.++.++..|+
T Consensus        70 ~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl  103 (242)
T COG4161          70 KTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL  103 (242)
T ss_pred             cCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence               12222       2346777888888887773

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.5e-07  Score=77.52  Aligned_cols=51  Identities=16%  Similarity=0.116  Sum_probs=42.2

Q ss_pred             hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      -.+.++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus        10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQ-----VTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCceEEEEEEEEEeCCeEEeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            345677888887764 457889999999888     8999999999999999 77764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.9e-07  Score=76.23  Aligned_cols=48  Identities=19%  Similarity=0.154  Sum_probs=40.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRGT-----VNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            466778877663 467889999999888     8999999999999999 77765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1.5e-07  Score=76.81  Aligned_cols=48  Identities=17%  Similarity=0.014  Sum_probs=39.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQ-----ITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            466778877663 457788999999888     8999999999999999 77764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.40  E-value=1.7e-07  Score=85.13  Aligned_cols=49  Identities=14%  Similarity=0.006  Sum_probs=40.8

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.  ..++.++++.+.+|+     +++|+||||||||||+ +|.+..
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge-----~~~liG~NGsGKSTLl~~i~G~~   55 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPGA-----KIGVLGLNGAGKSTLLRIMAGVD   55 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            566778887774  357889999999888     8999999999999999 777653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1e-07  Score=78.88  Aligned_cols=49  Identities=16%  Similarity=-0.000  Sum_probs=41.4

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+.
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPEKT-----VTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            4778888888774 457889999999888     8999999999999999 77764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1.8e-07  Score=76.48  Aligned_cols=48  Identities=19%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++.++++++.+. ..++.++++.+.+|+     +++|+||||+|||||+ ++.+.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270          4 KMESKNLNLWYGEKQALNDINLPIYENK-----ITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             EEEEEEeEEEECCeeeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            456777777663 457889999998888     8999999999999999 77764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.40  E-value=1.7e-07  Score=75.46  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=38.1

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..+.++++++.     ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~G~   56 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQ-----VMAILGSSGSGKTTLLDAISGR   56 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCe-----EEEEECCCCCCHHHHHHHHhCc
Confidence            34567777774     357889999998888     8999999999999999 77664

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.39  E-value=1.6e-07  Score=86.77  Aligned_cols=49  Identities=12%  Similarity=0.029  Sum_probs=41.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.+.++++.+. ..++.+++|.|.+|+     .++|+||||||||||+ +|.+..
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge-----~v~LvG~NGsGKSTLLriiaG~~   53 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNE-----RVCLVGRNGAGKSTLMKILNGEV   53 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence            466778888774 457889999999888     8999999999999999 777753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=1.6e-07  Score=77.60  Aligned_cols=48  Identities=17%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus        21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         21 ILEVKDLSIYYGEKRAVNDISMDIEKHA-----VTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             eEEEEEEEEEeCCceeeeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            678889888774 457889999999888     8999999999999999 77663

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.38  E-value=1.6e-07  Score=74.10  Aligned_cols=44  Identities=20%  Similarity=-0.028  Sum_probs=31.3

Q ss_pred             eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+. ..++.+ ++.+++|+     +++|+||||||||||+ ++.++-.
T Consensus         5 ~l~~~~~~~~~l~~-~~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222           5 DCVKRYGVFFLLVE-LGVVKEGE-----VIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CeEEEECCEEEEcc-CcEECCCC-----EEEEECCCCChHHHHHHHHHcCCC
Confidence            4444442 334444 36777777     8999999999999999 7777643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.38  E-value=7.7e-08  Score=77.76  Aligned_cols=48  Identities=15%  Similarity=0.029  Sum_probs=37.6

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ..+++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+...
T Consensus        24 ~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          24 GILGRKGEVGEFWALKDVSFEVPRGE-----RIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             hhhhhhhhcCCeEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445555553 457888999998888     8999999999999999 7777643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=1.8e-07  Score=77.56  Aligned_cols=49  Identities=18%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+++++++++.+. ..++.++++.|++|+     +++|+||||||||||+ ++.+.
T Consensus        12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         12 IIISLQNVTISYGTFEAVKNVFCDIPRGK-----VTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             ceEEEEeEEEEECCEEEEcceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            3677888888774 457889999999888     8999999999999999 77664

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=1.8e-07  Score=76.93  Aligned_cols=48  Identities=19%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl   61 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPKNS-----VTALIGPSGCGKSTFIRCLNRM   61 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcC
Confidence            567778877663 457889999998888     8999999999999999 77764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.37  E-value=2e-07  Score=76.03  Aligned_cols=48  Identities=13%  Similarity=-0.009  Sum_probs=40.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNE-----ITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence            567788887764 457889999998888     8999999999999999 77654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.6e-07  Score=76.73  Aligned_cols=48  Identities=15%  Similarity=0.092  Sum_probs=39.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242          6 KMEARGLSFFYGDFQALHDISLEFEQNQ-----VTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EEEEeeeEEEECCeeeecceeEEEeCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            456778877764 457889999999888     8999999999999999 77654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.37  E-value=2.7e-07  Score=83.30  Aligned_cols=48  Identities=17%  Similarity=-0.035  Sum_probs=39.9

Q ss_pred             ceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+.            ..++.++|+.+++|+     +++|+||||||||||+ ++.+.
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLlk~l~Gl  335 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE-----TLGLVGESGSGKSTTGLALLRL  335 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCc
Confidence            567778887763            357889999999888     8999999999999999 66664

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.37  E-value=5.2e-07  Score=80.93  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .++..++++.|. +.+.++.|+.|++||     +-+|+|.+|+|||||+ ++-+...            |.+||+  +|+
T Consensus         4 ~l~~~~itK~f~~~~And~V~l~v~~Ge-----IHaLLGENGAGKSTLm~iL~G~~~------------P~~GeI~v~G~   66 (501)
T COG3845           4 ALEMRGITKRFPGVVANDDVSLSVKKGE-----IHALLGENGAGKSTLMKILFGLYQ------------PDSGEIRVDGK   66 (501)
T ss_pred             eEEEeccEEEcCCEEecCceeeeecCCc-----EEEEeccCCCCHHHHHHHHhCccc------------CCcceEEECCE
Confidence            345667788884 778889999999999     7999999999999999 7777665            999994  898


Q ss_pred             ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn  133 (166)
                      ...|-+..+-.+     ..|.-.+++..++.+|
T Consensus        67 ~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN   99 (501)
T COG3845          67 EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN   99 (501)
T ss_pred             EeccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence            877766555433     2355567888888888

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.36  E-value=2.2e-07  Score=78.14  Aligned_cols=48  Identities=21%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++++++++. ...++.++++.+++|+     +++|+||||||||||+ +|.+..
T Consensus        39 ~l~i~nls~~-~~~vL~~vs~~i~~Ge-----~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          39 NLFFSNLCLV-GAPVLKNINLKIEKGE-----MLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             eEEEEEEEEe-cccceeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            4677787765 3457888999999888     8999999999999999 777654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.36  E-value=1.9e-07  Score=95.86  Aligned_cols=109  Identities=17%  Similarity=0.083  Sum_probs=73.3

Q ss_pred             cCceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088         28 AGITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-  102 (166)
Q Consensus        28 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-  102 (166)
                      ..+++++++++.+.   ..++.++++.|++||     +++|+||+|||||||+ ++.+.-.            |..|++ 
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GE-----i~gLLG~NGAGKTTLlkmL~Gll~------------ptsG~I~ 1997 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGE-----CFGLLGVNGAGKTTTFKMLTGDTT------------VTSGDAT 1997 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCc-----EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEE
Confidence            44788889998875   458889999999998     8999999999999999 7777654            778874 


Q ss_pred             -CCcceeecCHHH----HHHHHHcCCccceeeehhh------hcCCChHH----HHHHHhhccCChh
Q psy18088        103 -DGKAYHFVTRAD----MEERIAAGEFLEHAEFAAN------LYGTSQCG----RQNGRNYLIFNTL  154 (166)
Q Consensus       103 -~G~~y~fvs~~~----f~~~~~~~~fle~~~~~gn------~yG~~~~~----I~~ile~v~L~~~  154 (166)
                       +|.+... ...+    +....|...+.+..+..++      .+|.+.+.    ++++++.++|.+.
T Consensus      1998 i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~ 2063 (2272)
T TIGR01257      1998 VAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY 2063 (2272)
T ss_pred             ECCEECcc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH
Confidence             6655311 1111    1122455556666666665      24665433    3455666777644

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2e-07  Score=77.23  Aligned_cols=49  Identities=14%  Similarity=0.009  Sum_probs=41.1

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl   69 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEKNK-----ITALIGPSGSGKSTYLRSLNRM   69 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            3677888887763 567888999998888     8999999999999999 77664

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.36  E-value=2.9e-07  Score=83.68  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=39.7

Q ss_pred             ceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++.+++++.+.            +.++++.||.|++||     +++|+|+||||||||. ++.++-.
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE-----~lglVGeSGsGKSTlar~i~gL~~  342 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE-----TLGLVGESGSGKSTLARILAGLLP  342 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            445666665553            466889999999999     8999999999999999 6666554

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.35  E-value=1.8e-07  Score=74.91  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++.++++.+++|+     +++|+||||||||||+ +|.+..
T Consensus        14 ~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          14 LATLSNINIRIPTGQ-----LTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CcceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence            457888899998888     8999999999999999 777654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2.3e-07  Score=75.84  Aligned_cols=48  Identities=13%  Similarity=0.009  Sum_probs=40.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENS-----VTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            466778887764 457889999998888     8999999999999999 77664

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.9e-07  Score=76.39  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=39.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNR-----VTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence            566778877763 457889999999888     8999999999999999 77754

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2e-07  Score=85.94  Aligned_cols=49  Identities=22%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.     ..++.+++|.|.+|+     +++|+||||||||||+ ++.++.
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge-----~~~lvG~nGsGKSTLl~~l~Gll   66 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGE-----TLAIVGESGSGKSVTALALMRLL   66 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcCC
Confidence            677888888773     357889999999888     8999999999999999 666653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2.7e-07  Score=83.31  Aligned_cols=49  Identities=18%  Similarity=-0.018  Sum_probs=40.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~i~G~~  369 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEAGE-----RLAIIGENGVGKTTLLRTLVGEL  369 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            567778887764 457888999999888     8999999999999999 777654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=3e-07  Score=75.19  Aligned_cols=49  Identities=12%  Similarity=-0.006  Sum_probs=39.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPERQ-----ITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence            455677777664 457889999998888     8999999999999999 776653

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=1.9e-07  Score=77.63  Aligned_cols=60  Identities=17%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             hhhHHHHHHh--cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         18 VTKQSYIREN--AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        18 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      |..+|.+...  ..+++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.+.
T Consensus        10 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         10 VKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENE-----VTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             ecchhhhccCCCceEEEEeeeEEEECCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            4455666543  33688889988764 457888999998888     8999999999999999 77664

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5e-07  Score=80.15  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=75.1

Q ss_pred             cCceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         28 AGITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        28 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      .+...+++|++.+.  .+.+.+++|.+..|+     .++++||||+|||||. |+=++.+            +.+|.  +
T Consensus       260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~-----tvAiVg~SG~gKsTI~rllfRFyD------------~~sG~I~i  322 (497)
T COG5265         260 LGAVAFINVSFAYDPRRPILNGISFTIPLGK-----TVAIVGESGAGKSTILRLLFRFYD------------VNSGSITI  322 (497)
T ss_pred             cceEEEEEEEeeccccchhhcCccccccCcc-----EEEEEeCCCCcHHHHHHHHHHHhC------------CcCceEEE
Confidence            34667777776663  667888999988777     8999999999999999 8888887            88886  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHH
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNG  145 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~i  145 (166)
                      +|.+..-++....++.   ..++..+...++.-| .||-+..+.+++
T Consensus       323 d~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev  369 (497)
T COG5265         323 DGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV  369 (497)
T ss_pred             cchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence            8888777777776664   456666666666544 788776443333

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=3e-07  Score=75.92  Aligned_cols=49  Identities=16%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus        15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         15 QKSEVNKLNFYYGGYQALKNINMMVHEKQ-----VTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             ceEEEEEEEEEECCeeeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence            3577788887764 467889999999888     8999999999999999 77764

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.33  E-value=2.7e-07  Score=76.66  Aligned_cols=51  Identities=18%  Similarity=0.078  Sum_probs=41.8

Q ss_pred             cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc-cc
Q psy18088         28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT-VL   83 (166)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~-~~   83 (166)
                      +-+.++++++.... ..++++++++|++||     =-+|+||+|||||||+ ++.. +|
T Consensus        29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge-----~W~I~G~NGsGKTTLL~ll~~~~~   82 (257)
T COG1119          29 EPLIELKNVSVRRNGKKILGDLSWQVNPGE-----HWAIVGPNGAGKTTLLSLLTGEHP   82 (257)
T ss_pred             cceEEecceEEEECCEeeccccceeecCCC-----cEEEECCCCCCHHHHHHHHhcccC
Confidence            34677888777664 778999999999999     5899999999999999 5554 44

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3e-07  Score=82.50  Aligned_cols=48  Identities=13%  Similarity=0.043  Sum_probs=39.1

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+. .++.++|+.+++|+     +++|+||||||||||+ ++.+..
T Consensus       265 ~l~~~~l~~~~~-~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        265 VFEVRNVTSRDR-KKVRDISFSVCRGE-----ILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             EEEEeCccccCC-CcccceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            567777776432 47889999999888     8999999999999999 777654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.3e-07  Score=74.88  Aligned_cols=48  Identities=15%  Similarity=0.095  Sum_probs=39.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ +|.+.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255          5 IITSSDVHLFYGKFEALKGIDLDFNQNE-----ITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             eEEEEeEEEEECCeeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            566778887764 457889999998888     8999999999999999 77663

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3e-07  Score=74.98  Aligned_cols=47  Identities=15%  Similarity=0.009  Sum_probs=38.6

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.++++++.+. ..++.++++.+++|+     +++|+||||+|||||+ ++.+.
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   52 (249)
T PRK14253          4 FNIENLDLFYGENQALKSINLPIPARQ-----VTALIGPSGCGKSTLLRCLNRM   52 (249)
T ss_pred             EEEeccEEEECCeeeeecceEEecCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            45667776653 457889999999888     8999999999999999 77664

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.32  E-value=2.9e-07  Score=82.82  Aligned_cols=45  Identities=18%  Similarity=0.088  Sum_probs=37.2

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus         3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269         3 VKNLTKKFDGKEVLKNISFTIEEGE-----VLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             EEEEEEEECCeEeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhc
Confidence            456776663 457889999999888     8999999999999999 77765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.32  E-value=2.4e-07  Score=83.32  Aligned_cols=49  Identities=22%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.      ..++.++++.|++|+     +++|+||||||||||+ ++.+..
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~Gl~  334 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE-----IFGIVGTSGAGKTTLSKIIAGVL  334 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            677888887762      357888999999888     8999999999999999 776653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=3.1e-07  Score=75.94  Aligned_cols=48  Identities=17%  Similarity=0.059  Sum_probs=40.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.++
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKNQ-----ITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            567788887764 467889999999888     8999999999999999 77754

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=1.6e-07  Score=78.80  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             hhhhhhHHHHH-Hhc-------CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         15 QMTVTKQSYIR-ENA-------GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        15 ~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .-|.+++-|+- .++       ..+.++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         16 AETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKY-----VTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             ccccccceeccccccccCCCCceEEEEeeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            34556777776 111       2567888887764 457888999999888     8999999999999999 77764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=2.4e-07  Score=76.09  Aligned_cols=48  Identities=17%  Similarity=0.079  Sum_probs=40.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.+.++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus        12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         12 VYQINGMNLWYGQHHALKNINLSIPENE-----VTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             eEEEeeEEEEECCeeeEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            567888887764 457888999998888     8999999999999999 77653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=3.3e-07  Score=74.81  Aligned_cols=48  Identities=15%  Similarity=0.071  Sum_probs=39.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEKE-----LTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhc
Confidence            456778877663 567888999999888     8999999999999999 77764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.3e-07  Score=84.13  Aligned_cols=49  Identities=12%  Similarity=-0.006  Sum_probs=40.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++++.|.+|+     +++|+||||||||||+ +|.+..
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~G~~  362 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVPGS-----RIGLLGRNGAGKSTLIKLLAGEL  362 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            466777777764 457889999999888     8999999999999999 776654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.30  E-value=3.7e-07  Score=81.67  Aligned_cols=48  Identities=19%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge-----~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGE-----CVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            45667777764 457889999999888     8999999999999999 776643

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.30  E-value=2.6e-07  Score=72.86  Aligned_cols=33  Identities=15%  Similarity=0.095  Sum_probs=29.4

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      ..++.++|+.+++|+     +++|+||||||||||+ ++
T Consensus         8 ~~~l~~isl~i~~G~-----~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238           8 VHNLQNLDVSIPLNV-----LVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             eeeecceEEEEcCCC-----EEEEECCCCCCHHHHHHHH
Confidence            567788999999888     8999999999999999 55

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.30  E-value=3.9e-07  Score=82.85  Aligned_cols=49  Identities=8%  Similarity=-0.028  Sum_probs=40.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++++.|++|+     +++|+||||||||||+ ++.+..
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~i~G~~  374 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPPGG-----IVGIIGPNGAGKSTLFKMITGQE  374 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            577778887764 457889999999888     8999999999999999 776653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.30  E-value=3.7e-07  Score=73.78  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=28.9

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         2 l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         2 VQDLNLSLKRGE-----VLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             ccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            457788888888     8999999999999999 777754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.30  E-value=6.3e-07  Score=92.17  Aligned_cols=107  Identities=17%  Similarity=0.062  Sum_probs=71.3

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      .++++++++.+.   ..++.++++.+.+|+     +++|+||||||||||+ ++.+.-.            |.+|++  +
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Ge-----i~aLLG~NGAGKSTLLkiLaGLl~------------PtsG~I~i~  990 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQ-----ITAFLGHNGAGKTTTLSILTGLLP------------PTSGTVLVG  990 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcCCc-----EEEEECCCCChHHHHHHHHhcCCC------------CCceEEEEC
Confidence            466778887773   457889999999888     8999999999999999 8877654            777874  6


Q ss_pred             CcceeecCHHHHHH----HHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088        104 GKAYHFVTRADMEE----RIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       104 G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~  154 (166)
                      |.+... ...++.+    ..|...+.+..++.+|      .+|.+.    +.++++++.++|.+.
T Consensus       991 G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~ 1054 (2272)
T TIGR01257       991 GKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK 1054 (2272)
T ss_pred             CEECcc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence            765321 1122222    2344445556666665      245543    345667777887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.29  E-value=4e-07  Score=81.46  Aligned_cols=48  Identities=15%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             ceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+    ...++.++++.|++|+     +++|+||||||||||+ ++.+.
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~  309 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGE-----ILGVAGLVGAGRTELVQALFGA  309 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCc-----EEEEeCCCCCCHHHHHHHHhCC
Confidence            57788888765    2357889999999888     8999999999999999 77665

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=3.3e-07  Score=74.85  Aligned_cols=47  Identities=15%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++++++++.+. ..++.+.++.+++|+     +++|+||||||||||+ ++.+
T Consensus         3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245          3 KIDARDVNFWYGDFHALKGISMEIEEKS-----VVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             EEEEEEEEEEECCEeEEeeeeEEEeCCC-----EEEEECCCCCCHHHHHHHHhh
Confidence            455677777663 457788999999888     8999999999999999 7765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=3.9e-07  Score=76.04  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=40.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||+|||||+ +|.+.
T Consensus        21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl   70 (276)
T PRK14271         21 AMAAVNLTLGFAGKTVLDQVSMGFPARA-----VTSLMGPTGSGKTTFLRTLNRM   70 (276)
T ss_pred             EEEEeeEEEEECCEEEeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence            567888888874 567889999998888     8999999999999999 77664

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.29  E-value=4.7e-07  Score=75.03  Aligned_cols=44  Identities=20%  Similarity=0.029  Sum_probs=32.8

Q ss_pred             eecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++.+.  ..++.++++ +++|+     +++|+||||||||||+ ++.+...
T Consensus         5 ~~~~~y~~~~~~l~~i~~-i~~Ge-----~~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236           5 EPVHRYGPNSFKLHRLPV-PREGQ-----VLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CcceeecCcchhhhcCCC-CCCCC-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence            4455542  246677773 77777     8999999999999999 7777654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=2.9e-07  Score=77.88  Aligned_cols=59  Identities=15%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             hhHHHHHH---hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         19 TKQSYIRE---NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        19 ~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++||-.-   ...++.++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.+.
T Consensus        31 ~~~~~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge-----~~~IvG~nGsGKSTLl~~L~Gl   94 (305)
T PRK14264         31 TRDEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKS-----VTALIGPSGCGKSTFLRCLNRM   94 (305)
T ss_pred             hhhcccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            56666552   223677888887764 567888999998888     8999999999999999 66664

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.28  E-value=4.8e-07  Score=82.17  Aligned_cols=49  Identities=8%  Similarity=-0.040  Sum_probs=40.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.-
T Consensus       322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~~  372 (552)
T TIGR03719       322 VIEAENLSKGFGDKLLIDDLSFKLPPGG-----IVGVIGPNGAGKSTLFRMITGQE  372 (552)
T ss_pred             EEEEeeEEEEECCeeeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence            566777777664 457888999999888     8999999999999999 776653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.27  E-value=3.9e-07  Score=75.63  Aligned_cols=50  Identities=16%  Similarity=0.024  Sum_probs=41.6

Q ss_pred             cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..+++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus        23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge-----~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQALFDISMRIPKNR-----VTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             CcEEEEEEEEEEECCeeEeeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            34678888888764 457788999999888     8999999999999999 77665

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=5.2e-07  Score=74.39  Aligned_cols=49  Identities=14%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQSK-----VTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhccc
Confidence            467778887764 357889999999888     8999999999999999 777653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=4.4e-07  Score=75.59  Aligned_cols=48  Identities=13%  Similarity=0.024  Sum_probs=40.5

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge-----~~~IiG~nGsGKSTLl~~l~Gl   69 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPAKK-----IIAFIGPSGCGKSTLLRCFNRM   69 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            677888888774 457889999999888     8999999999999999 77764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=5.1e-07  Score=81.07  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             ceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+    ...++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl  311 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGE-----ILGIAGLVGAGRTELVQCLFGA  311 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCc-----EEEEeCCCCCCHHHHHHHHhCC
Confidence            57788888765    2457889999999888     8999999999999999 77665

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.26  E-value=5.4e-07  Score=83.28  Aligned_cols=49  Identities=18%  Similarity=0.165  Sum_probs=40.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++++.+. ..++.++++.|.+|+     +++|+||||||||||+ ++.+..
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~G~~  369 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGD-----KIALIGPNGCGKTTLLKLMLGQL  369 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence            567778887764 457888999998888     8999999999999999 776653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.24  E-value=1e-06  Score=71.15  Aligned_cols=49  Identities=16%  Similarity=0.057  Sum_probs=37.8

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.+++-+.+. ..++...|+.-++|+     .|.|+|.|||||||++ .|+.+..
T Consensus         7 l~v~dlHK~~G~~eVLKGvSL~A~~Gd-----VisIIGsSGSGKSTfLRCiN~LE~   57 (256)
T COG4598           7 LEVEDLHKRYGEHEVLKGVSLQANAGD-----VISIIGSSGSGKSTFLRCINFLEK   57 (256)
T ss_pred             eehhHHHhhcccchhhcceeeecCCCC-----EEEEecCCCCchhHHHHHHHhhcC
Confidence            33445566664 556777887777777     8999999999999999 8887665

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.24  E-value=6.1e-07  Score=89.55  Aligned_cols=105  Identities=17%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      ++.++|+|...     ..++.++++.+++|+     +++|+||||||||||+ ++.+...         ...|.+|+  +
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge-----~~aI~G~sGaGKSTLL~~Lag~~~---------~g~~~~G~I~i  825 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGT-----LTALMGASGAGKTTLLNVLAERVT---------TGVITGGDRLV  825 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCCCC---------CCCcceeEEEE
Confidence            46677777652     457889999988888     8999999999999999 6666431         00134565  3


Q ss_pred             CCcceeecCHHHHHH----HHHcCCccceeeehhhh-cC--------CCh----HHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL-YG--------TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~-yG--------~~~----~~I~~ile~v~L~~  153 (166)
                      +|++.   +. .+.+    ..|++.+++..++.+|. ++        .+.    +.++++++.++|.+
T Consensus       826 ~G~~~---~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~  889 (1394)
T TIGR00956       826 NGRPL---DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES  889 (1394)
T ss_pred             CCEEC---Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence            66553   21 2222    23445566677777762 21        222    23566777777654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.24  E-value=5.9e-07  Score=80.27  Aligned_cols=48  Identities=10%  Similarity=-0.022  Sum_probs=38.6

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +..+.++++.. ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus       250 ~i~~~~l~~~~-~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~  298 (491)
T PRK10982        250 ILEVRNLTSLR-QPSIRDVSFDLHKGE-----ILGIAGLVGAKRTDIVETLFGIR  298 (491)
T ss_pred             EEEEeCccccc-CcccceeeEEEeCCc-----EEEEecCCCCCHHHHHHHHcCCC
Confidence            45666777653 347888999999888     8999999999999999 776654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.23  E-value=4.3e-07  Score=75.56  Aligned_cols=37  Identities=19%  Similarity=0.114  Sum_probs=31.6

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++.++++.+++|+     .++|+||+|||||||+ ++.+..
T Consensus        37 ~~il~~is~~i~~Ge-----~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         37 FFALDDISLKAYEGD-----VIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             eEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence            456778899999888     8999999999999999 777654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=6.1e-07  Score=73.81  Aligned_cols=48  Identities=15%  Similarity=0.095  Sum_probs=40.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRNK-----VTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            566778887664 457889999999888     8999999999999999 77664

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=6.2e-07  Score=75.22  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=40.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus        39 ~l~i~~l~~~~~~~~il~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl   88 (285)
T PRK14254         39 VIEARDLNVFYGDEQALDDVSMDIPENQ-----VTAMIGPSGCGKSTFLRCINRM   88 (285)
T ss_pred             eEEEEEEEEEECCEeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            567788887764 467889999999888     8999999999999999 77664

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.22  E-value=7.5e-07  Score=79.51  Aligned_cols=48  Identities=15%  Similarity=-0.073  Sum_probs=40.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus       260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~G~  309 (490)
T PRK10938        260 RIVLNNGVVSYNDRPILHNLSWQVNPGE-----HWQIVGPNGAGKSTLLSLITGD  309 (490)
T ss_pred             eEEEeceEEEECCeeEEeeceEEEcCCC-----EEEEECCCCCCHHHHHHHHcCC
Confidence            677888887764 457889999999888     8999999999999999 76664

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=6e-07  Score=73.37  Aligned_cols=45  Identities=16%  Similarity=0.059  Sum_probs=35.9

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++++.+. ..++.++++.+.+|+     +++|+||||||||||+ ++.+.
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244          8 VKNLNLWYGSKQILFDINLDIYKRE-----VTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             eeeEEEEECCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            445555543 457788999998888     8999999999999999 77765

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.20  E-value=5e-07  Score=82.39  Aligned_cols=54  Identities=17%  Similarity=0.078  Sum_probs=43.4

Q ss_pred             HHhcCceEEeeecceeee----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         25 RENAGITVRILLNYRTCI----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      |-+..++.++++++.+..    .++.++++.+.+|+     +++|+||+|||||||+ ++.+..
T Consensus        16 ~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GE-----ivgIiGpNGSGKSTLLkiLaGLl   74 (549)
T PRK13545         16 MYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGE-----IVGIIGLNGSGKSTLSNLIAGVT   74 (549)
T ss_pred             ccccceeEEEEEEEecCCCccceEEeeeEEEEeCCC-----EEEEEcCCCCCHHHHHHHHhCCC
Confidence            555557888888766642    46888999998888     8999999999999999 777754

>PLN03073 ABC transporter F family; Provisional

Probab=98.19  E-value=8.5e-07  Score=83.40  Aligned_cols=49  Identities=20%  Similarity=0.077  Sum_probs=40.1

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus       508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge-----~i~LvG~NGsGKSTLLk~L~Gll  559 (718)
T PLN03073        508 IISFSDASFGYPGGPLLFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLISGEL  559 (718)
T ss_pred             eEEEEeeEEEeCCCCeeEeccEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence            567778887763  347888999999888     8999999999999999 776654

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.19  E-value=1.8e-06  Score=76.49  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             eEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         31 TVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        31 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++.++.|-+  +.--+++++..+++||     ++-|+|.+||||||+. |+.++..            |.+||+  ||.
T Consensus       323 lelrnvrfay~~~~FhvgPiNl~ikrGe-----lvFliG~NGsGKST~~~LLtGL~~------------PqsG~I~ldg~  385 (546)
T COG4615         323 LELRNVRFAYQDNAFHVGPINLTIKRGE-----LVFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGK  385 (546)
T ss_pred             eeeeeeeeccCcccceecceeeEEecCc-----EEEEECCCCCcHHHHHHHHhcccC------------CCCCceeECCc
Confidence            4555655544  3233566788889899     7999999999999999 8888876            999985  787


Q ss_pred             ceeecCHHHHHHHHH
Q psy18088        106 AYHFVTRADMEERIA  120 (166)
Q Consensus       106 ~y~fvs~~~f~~~~~  120 (166)
                      ..-.-+.++++.++.
T Consensus       386 pV~~e~ledYR~LfS  400 (546)
T COG4615         386 PVSAEQLEDYRKLFS  400 (546)
T ss_pred             cCCCCCHHHHHHHHH
Confidence            644445555665543

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.18  E-value=1e-06  Score=70.45  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+++.+.|+.|..||     .++|-||||+|||||+  |-+.+
T Consensus        24 LpV~~~vslsV~aGE-----CvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778          24 LPVLRNVSLSVNAGE-----CVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             eeeeeceeEEecCcc-----EEEeeCCCCCcHHHHHHHHHhcc
Confidence            567888999999999     6999999999999999  65554

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.17  E-value=1.6e-06  Score=74.34  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +.+++++||.|++||     +++|+|.||||||++.  ++..+|
T Consensus        18 v~av~~vs~~i~~GE-----~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          18 VKAVDGVSFELKKGE-----ILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             EEEEeceeEEEcCCc-----EEEEEcCCCCCHHHHHHHHHhccC
Confidence            678899999999999     8999999999999999  666665

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.17  E-value=2e-06  Score=79.35  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCC---CCCc--cCCcceeecCHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGP---RPGE--VDGKAYHFVTRADM  115 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p---~~ge--~~G~~y~fvs~~~f  115 (166)
                      ..++.++++.+++||     +++|+||||||||||+ ++.+...            +   ..|+  ++|.+.   +...+
T Consensus        38 ~~iL~~vs~~i~~Ge-----~~aI~G~sGsGKSTLL~~L~g~~~------------~~~~~~G~i~~~g~~~---~~~~~   97 (617)
T TIGR00955        38 KHLLKNVSGVAKPGE-----LLAVMGSSGAGKTTLMNALAFRSP------------KGVKGSGSVLLNGMPI---DAKEM   97 (617)
T ss_pred             cccccCCEEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcceeEEEECCEEC---CHHHH
Confidence            457888998888888     8999999999999999 6665432            2   1344  355442   22233


Q ss_pred             HH----HHHcCCccceeeehhhh-cC----C----Ch----HHHHHHHhhccCCh
Q psy18088        116 EE----RIAAGEFLEHAEFAANL-YG----T----SQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       116 ~~----~~~~~~fle~~~~~gn~-yG----~----~~----~~I~~ile~v~L~~  153 (166)
                      .+    ..|++.+++..++.+|. ++    .    +.    +.++++++.++|.+
T Consensus        98 ~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~  152 (617)
T TIGR00955        98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK  152 (617)
T ss_pred             hhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh
Confidence            22    24555566677777762 21    1    11    23566666777654

>PLN03211 ABC transporter G-25; Provisional

Probab=98.17  E-value=2.5e-07  Score=86.09  Aligned_cols=36  Identities=14%  Similarity=0.064  Sum_probs=30.9

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..++.++++.+++||     +++|+||||+|||||+ ++.+.
T Consensus        81 ~~iL~~vs~~i~~Ge-----~~aI~GpnGaGKSTLL~iLaG~  117 (659)
T PLN03211         81 RTILNGVTGMASPGE-----ILAVLGPSGSGKSTLLNALAGR  117 (659)
T ss_pred             CeeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCC
Confidence            457788888888888     8999999999999999 77764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.15  E-value=1.1e-06  Score=71.32  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ...++.++|+.|++||     +++|+||||||||||+
T Consensus         7 ~~~~l~~vsl~i~~Ge-----~~~l~G~sGsGKSTL~   38 (226)
T cd03270           7 REHNLKNVDVDIPRNK-----LVVITGVSGSGKSSLA   38 (226)
T ss_pred             hhhccccceeecCCCc-----EEEEEcCCCCCHHHHH
Confidence            3567889999999998     8999999999999994

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=9.5e-07  Score=72.04  Aligned_cols=47  Identities=17%  Similarity=0.057  Sum_probs=37.2

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++++++.+. ..++.++++.+.+|+     +++|+||||+|||||+ ++.+.
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPKNS-----VTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence            44566666553 457888999998888     8999999999999999 77653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.13  E-value=1.5e-06  Score=78.00  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.++++.+++|+     +++|+||||||||||+ ++.+..
T Consensus       266 ~~l~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~G~~  302 (501)
T PRK10762        266 PGVNDVSFTLRKGE-----ILGVSGLMGAGRTELMKVLYGAL  302 (501)
T ss_pred             CCcccceEEEcCCc-----EEEEecCCCCCHHHHHHHHhCCC
Confidence            35788899998888     8999999999999999 776654

>PLN03073 ABC transporter F family; Provisional

Probab=98.12  E-value=1.1e-06  Score=82.55  Aligned_cols=49  Identities=16%  Similarity=0.038  Sum_probs=42.0

Q ss_pred             cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++.++++++.+. ..++.+.++.|..|+     .++|+||||||||||+ +|.+
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge-----~~gLvG~NGsGKSTLLr~l~g  225 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGR-----HYGLVGRNGTGKTTFLRYMAM  225 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCC-----EEEEECCCCCCHHHHHHHHcC
Confidence            34788889998884 458889999998888     8999999999999999 7765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=1.5e-06  Score=71.85  Aligned_cols=45  Identities=18%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+.+++.+. ..++.+.++.+.+|+     +++|+||||+|||||+ ++.+.
T Consensus        11 ~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl   57 (261)
T PRK14263         11 CKLDKIFYGNFMAVRDSHVPIRKNE-----ITGFIGPSGCGKSTVLRSLNRM   57 (261)
T ss_pred             EEeEEEEeCCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcc
Confidence            334444443 456778899988888     8999999999999999 77664

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.12  E-value=1.7e-06  Score=77.92  Aligned_cols=44  Identities=16%  Similarity=0.068  Sum_probs=35.4

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++..++++.    ..+.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus       268 ~l~~~~l~~----~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~i~Gl  312 (510)
T PRK15439        268 VLTVEDLTG----EGFRNISLEVRAGE-----ILGLAGVVGAGRTELAETLYGL  312 (510)
T ss_pred             eEEEeCCCC----CCccceeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCC
Confidence            455666653    25778899998888     8999999999999999 77665

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.11  E-value=1.8e-06  Score=77.46  Aligned_cols=36  Identities=11%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.++|+.|++|+     +++|+||||||||||+ ++.+..
T Consensus       267 ~~l~~isl~i~~Ge-----~~~iiG~NGsGKSTLlk~l~G~~  303 (501)
T PRK11288        267 GLREPISFSVRAGE-----IVGLFGLVGAGRSELMKLLYGAT  303 (501)
T ss_pred             CcccceeEEEeCCc-----EEEEEcCCCCCHHHHHHHHcCCC
Confidence            46788999999888     8999999999999999 666643

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.11  E-value=1.5e-06  Score=66.14  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.+.++.+.+|+     +++|+||+|+|||||+ ++.+.-
T Consensus        13 ~~l~~~~~~i~~g~-----~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          13 TALDNVSLTLKAGE-----IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             eeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            46667788887777     8999999999999999 776644

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02840 tRNA dimethylallyltransferase

Probab=98.11  E-value=5.4e-07  Score=79.99  Aligned_cols=53  Identities=11%  Similarity=0.054  Sum_probs=41.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs  111 (166)
                      ++.+|+|+||+|||||||.  |...+..        .+...+..+|++|+..|.+++.||+++
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlid   82 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLID   82 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEe
Confidence            3458999999999999999  5555432        133456678999999999999998865

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.11  E-value=8.8e-07  Score=64.95  Aligned_cols=31  Identities=16%  Similarity=0.007  Sum_probs=24.7

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      ++.+.++.++.++     +++|+||||||||||+ ++
T Consensus         4 aL~~vsl~i~~ge-----~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820           4 SLHGVLVDVYGKV-----GVLITGDSGIGKTELALEL   35 (107)
T ss_pred             EEEeeEEEEcCCE-----EEEEEcCCCCCHHHHHHHh
Confidence            3455666776666     8999999999999999 54

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PLN03140 ABC transporter G family member; Provisional

Probab=98.11  E-value=3.9e-06  Score=84.29  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=65.1

Q ss_pred             ceEEeeecceee--------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeec
Q psy18088         30 ITVRILLNYRTC--------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTT   94 (166)
Q Consensus        30 ~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TT   94 (166)
                      ...+++|+|.-.              ..++.++++.+++|+     +++|+||||||||||+ ++.+... -        
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge-----l~aL~G~sGaGKTTLL~~LaG~~~-~--------  932 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGV-----LTALMGVSGAGKTTLMDVLAGRKT-G--------  932 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCe-----EEEEECCCCCCHHHHHHHHcCCCC-C--------
Confidence            366788887742              246778888888777     8999999999999999 7777542 0        


Q ss_pred             CCCCCCc--cCCcceeecCHHHHHH----HHHcCCccceeeehhhh-c----C----CCh----HHHHHHHhhccCChh
Q psy18088         95 RGPRPGE--VDGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL-Y----G----TSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus        95 R~p~~ge--~~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~-y----G----~~~----~~I~~ile~v~L~~~  154 (166)
                       .+.+|+  ++|.+.   +...+.+    ..|.+.+.+..++.++. +    .    .+.    +.++++++.++|.+.
T Consensus       933 -g~~~G~I~inG~~~---~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~ 1007 (1470)
T PLN03140        933 -GYIEGDIRISGFPK---KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL 1007 (1470)
T ss_pred             -CcccceEEECCccC---ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH
Confidence             012354  255431   2222222    23445566666776662 2    1    122    235677777777653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.11  E-value=2.8e-06  Score=77.38  Aligned_cols=50  Identities=12%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      ++...+++.++.     +.++.++||.|.+||     +++|+|-|||||||+.  ++..+|.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE-----~lgIvGESGsGKSt~a~~i~gll~~   61 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGE-----ILGIVGESGSGKSTLALALMGLLPE   61 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCc-----EEEEEcCCCCCHHHHHHHHhccCCC
Confidence            667777777663     457899999999999     8999999999999999  6666653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.10  E-value=3.1e-06  Score=78.52  Aligned_cols=50  Identities=12%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.     ..++.+.++.+++||     +++|+||||||||||+ ++.+...
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~~   59 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGE-----MVAIVGASGSGKSTLMNILGCLDK   59 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence            566778877662     357888999998888     8999999999999999 7777653

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.09  E-value=2.8e-06  Score=76.59  Aligned_cols=31  Identities=13%  Similarity=0.024  Sum_probs=27.8

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..++.++++.+++|+     +++|+||||||||||+
T Consensus        19 ~~vL~~Vsl~i~~GE-----iv~L~G~SGsGKSTLL   49 (504)
T TIGR03238        19 ERILVKFNKELPSSS-----LLFLCGSSGDGKSEIL   49 (504)
T ss_pred             HHHHhCCceeecCCC-----EEEEECCCCCCHHHHH
Confidence            456778899998888     8999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.09  E-value=2.1e-06  Score=69.28  Aligned_cols=25  Identities=16%  Similarity=0.038  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      |.+++|+||||||||||+ ++.+...
T Consensus         6 Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         6 GELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            448999999999999999 7777543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.08  E-value=3.9e-06  Score=84.50  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ..+++++++.+.   ..++.++++.+++|+     .++|+||+|||||||+ ++.+.-.            |.+|++  +
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~-----~v~IvG~~GsGKSTLl~~l~g~~~------------~~~G~i~~~  698 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGA-----LVAVVGQVGCGKSSLLSALLAEMD------------KVEGHVHMK  698 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc------------cCCcEEEEC
Confidence            466677776653   347888899998888     8999999999999999 6655443            667764  4


Q ss_pred             C-cceeecCHHHHHHHHHcCCccceeeehhh-hcCCC--hHHHHHHHhhccC
Q psy18088        104 G-KAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS--QCGRQNGRNYLIF  151 (166)
Q Consensus       104 G-~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~--~~~I~~ile~v~L  151 (166)
                      | ..|  ++.+         ..+..+++.+| .+|.+  .+..+++++.+.+
T Consensus       699 g~i~y--v~Q~---------~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l  739 (1522)
T TIGR00957       699 GSVAY--VPQQ---------AWIQNDSLRENILFGKALNEKYYQQVLEACAL  739 (1522)
T ss_pred             CEEEE--EcCC---------ccccCCcHHHHhhcCCccCHHHHHHHHHHhCC
Confidence            4 222  2222         23445677777 44533  3445555555443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=2.1e-06  Score=73.77  Aligned_cols=49  Identities=14%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.++++++++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.+.
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge-----~v~IvG~~GsGKSTLl~~L~g~  131 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNK-----VTAFIGPSGCGKSTFLRNLNQL  131 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence            4677888887663   357889999999888     8999999999999999 66554

>PRK13409 putative ATPase RIL; Provisional

Probab=98.04  E-value=2.2e-06  Score=79.00  Aligned_cols=49  Identities=24%  Similarity=0.124  Sum_probs=34.4

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++.+++++.+....+.+.++.+++||     +++|+||||||||||+ ++.+..
T Consensus       340 ~l~~~~ls~~~~~~~l~~~s~~i~~Ge-----iv~l~G~NGsGKSTLlk~L~Gl~  389 (590)
T PRK13409        340 LVEYPDLTKKLGDFSLEVEGGEIYEGE-----VIGIVGPNGIGKTTFAKLLAGVL  389 (590)
T ss_pred             EEEEcceEEEECCEEEEecceEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            455556655443222455666777777     8999999999999999 777654

>PRK13409 putative ATPase RIL; Provisional

Probab=98.04  E-value=3.6e-06  Score=77.55  Aligned_cols=35  Identities=17%  Similarity=-0.003  Sum_probs=27.4

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.+++ .+++|+     +++|+||||+|||||+ ++.+...
T Consensus        89 ~L~~l~-~i~~Ge-----v~gLvG~NGaGKSTLlkiL~G~l~  124 (590)
T PRK13409         89 KLYGLP-IPKEGK-----VTGILGPNGIGKTTAVKILSGELI  124 (590)
T ss_pred             eEecCC-cCCCCC-----EEEEECCCCCCHHHHHHHHhCCcc
Confidence            455555 566666     8999999999999999 7777643

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.03  E-value=1.4e-06  Score=70.96  Aligned_cols=48  Identities=15%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +..+++.+.+. .++..+.|+.|++||     ++.|+||+|+||||.+ ++-++-
T Consensus         5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GE-----iVGLLGPNGAGKTT~Fymi~Glv   54 (243)
T COG1137           5 LVAENLAKSYKKRKVVNDVSLEVNSGE-----IVGLLGPNGAGKTTTFYMIVGLV   54 (243)
T ss_pred             EEehhhhHhhCCeeeeeeeeEEEcCCc-----EEEEECCCCCCceeEEEEEEEEE
Confidence            44456666664 556677899999999     8999999999999999 666654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.99  E-value=8e-06  Score=69.22  Aligned_cols=103  Identities=19%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE  117 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~  117 (166)
                      ...+..++||.|.+|+     ++.++||+|+||||++ ++.+.--            |.+|.  ++|.+ =|-.++++.+
T Consensus        36 ~~~AVqdisf~IP~G~-----ivgflGaNGAGKSTtLKmLTGll~------------p~~G~v~V~G~~-Pf~~~~~~~~   97 (325)
T COG4586          36 SIEAVQDISFEIPKGE-----IVGFLGANGAGKSTTLKMLTGLLL------------PTSGKVRVNGKD-PFRRREEYLR   97 (325)
T ss_pred             hhhhhheeeeecCCCc-----EEEEEcCCCCcchhhHHHHhCccc------------cCCCeEEecCcC-cchhHHHHHH
Confidence            3456668888888777     8999999999999999 8887665            88886  46643 1224444444


Q ss_pred             HH----HcCCccceee-------ehhhhcCCChHH----HHHHHhhccCChhHHhhCCc
Q psy18088        118 RI----AAGEFLEHAE-------FAANLYGTSQCG----RQNGRNYLIFNTLAAKCLPT  161 (166)
Q Consensus       118 ~~----~~~~fle~~~-------~~gn~yG~~~~~----I~~ile~v~L~~~~~~~l~~  161 (166)
                      .+    -+..-+.|.-       +....|-++.+.    .+...++++|++......+.
T Consensus        98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~  156 (325)
T COG4586          98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK  156 (325)
T ss_pred             HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence            22    1112233322       223357777644    44555688888766655543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.98  E-value=2.5e-06  Score=69.11  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +.+....||.++++.     .++|+|.+|||||||+ ++++.-.            |.+||+  ||.
T Consensus        26 ~~AV~~vSFtL~~~Q-----TlaiIG~NGSGKSTLakMlaGmi~------------PTsG~il~n~~   75 (267)
T COG4167          26 VEAVKPVSFTLREGQ-----TLAIIGENGSGKSTLAKMLAGMIE------------PTSGEILINDH   75 (267)
T ss_pred             hhcccceEEEecCCc-----EEEEEccCCCcHhHHHHHHhcccC------------CCCceEEECCc
Confidence            445667889988887     8999999999999999 7776543            778874  654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.98  E-value=6e-06  Score=75.34  Aligned_cols=50  Identities=20%  Similarity=0.100  Sum_probs=41.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++..++++..+. ..++.+.++.+.+|+     -|+|||++|+|||||+ +|.+.-.
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~-----riGLvG~NGaGKSTLLkilaG~~~   54 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGE-----RIGLVGRNGAGKSTLLKILAGELE   54 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCC-----EEEEECCCCCCHHHHHHHHcCCCc
Confidence            456677787775 667889999998888     7999999999999999 7776443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.96  E-value=2.8e-06  Score=66.48  Aligned_cols=98  Identities=12%  Similarity=0.021  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeE-------EeecCCCCCCccCCcceeecCHHHHHHHH--------HcC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSV-------SHTTRGPRPGEVDGKAYHFVTRADMEERI--------AAG  122 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v-------~~TTR~p~~ge~~G~~y~fvs~~~f~~~~--------~~~  122 (166)
                      +++++|+||||||||||+  |+....- -...|       .|||+...--..++ +-..+|.+-|..+-        -..
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~-~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~l~~~~~~~l~~  112 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQ-KTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFGLWHIDPEELAQ  112 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETT-SEEEECSHHHHT--GCCS-HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcch-hhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccccccCCHHHHHH
Confidence            469999999999999999  6654211 11122       36776543333321 12234444443321        112


Q ss_pred             Cccceeeehhh-------hcCCChHHHHHHHhhccCChhHHhhC
Q psy18088        123 EFLEHAEFAAN-------LYGTSQCGRQNGRNYLIFNTLAAKCL  159 (166)
Q Consensus       123 ~fle~~~~~gn-------~yG~~~~~I~~ile~v~L~~~~~~~l  159 (166)
                      .|.|...+.+.       +..-+.++|+++++.=.+.+...+.+
T Consensus       113 ~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~~~Ry~~Y  156 (161)
T PF03193_consen  113 YFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEISPERYESY  156 (161)
T ss_dssp             CSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-HHHHHHH
T ss_pred             HHHHhccccCCCCccCCCCCCCCCChHHHHHHCCCCcHHHHHHH
Confidence            45666555443       34566789999988545555555443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=97.95  E-value=1.5e-06  Score=74.37  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             EEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHH--HHHHHHHcCCccceeeehhh-hc---
Q psy18088         65 HVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY---  135 (166)
Q Consensus        65 LiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y---  135 (166)
                      |+||||||||||+ +|.++..            |.+|++  +|.+....+..  .+....+...+..+.++.+| .|   
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~   68 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ------------PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLK   68 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHh
Confidence            5899999999999 7777654            666653  55443211111  01112344445555666666 22   


Q ss_pred             --CCCh----HHHHHHHhhccCCh
Q psy18088        136 --GTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       136 --G~~~----~~I~~ile~v~L~~  153 (166)
                        +.+.    +.++++++.+++.+
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~~l~~   92 (325)
T TIGR01187        69 MRKVPRAEIKPRVLEALRLVQLEE   92 (325)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCcc
Confidence              3332    23556666777754

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0054|consensus

Probab=97.95  E-value=7.9e-06  Score=81.15  Aligned_cols=107  Identities=21%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CceEEeeec--ceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLN--YRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      |-.++++++  |++. ..++.++++.++.+|     -|+|+|-+|||||||. -+=+.-+            |.+|+  +
T Consensus      1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~e-----KVGIVGRTGaGKSSL~~aLFRl~e------------~~~G~I~I 1199 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGE-----KVGIVGRTGAGKSSLILALFRLVE------------PAEGEILI 1199 (1381)
T ss_pred             CeEEEEEeEEEeCCCCcchhcCceEEEcCCc-----eEEEeCCCCCCHHHHHHHHHHhcC------------ccCCeEEE
Confidence            456666666  4444 678999999999999     8999999999999999 3333333            77787  5


Q ss_pred             CCcceeecCHHHHHH---HHHcCCccceeeehhhhcCC---ChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEE---RIAAGEFLEHAEFAANLYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn~yG~---~~~~I~~ile~v~L~  152 (166)
                      ||+|..-+.-.+.+.   .+.|+..+..++++-|.-..   +.++|=++++.+.|-
T Consensus      1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred             cCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChH
Confidence            999876666666655   36788899999999996443   345555566544443

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.88  E-value=2.8e-05  Score=62.64  Aligned_cols=46  Identities=15%  Similarity=-0.004  Sum_probs=33.9

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +....+++-+. ..--.+.||.+.+||     ++.|+|.||||||||+ .++.
T Consensus         7 L~V~~lsk~Yg~~~gc~~vsF~l~PGe-----VLgiVGESGSGKtTLL~~is~   54 (258)
T COG4107           7 LSVSGLSKLYGPGKGCRDVSFDLYPGE-----VLGIVGESGSGKTTLLKCISG   54 (258)
T ss_pred             eeehhhhhhhCCCcCccccceeecCCc-----EEEEEecCCCcHHhHHHHHhc
Confidence            33445555553 233457888998888     8999999999999999 6655

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.88  E-value=7.3e-06  Score=74.80  Aligned_cols=47  Identities=17%  Similarity=-0.026  Sum_probs=38.0

Q ss_pred             ceEEeeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         30 ITVRILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        30 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+++++++.+..  .++.+.+|.|++|+     -|+|+||+|+|||||+ ++.+
T Consensus       321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~-----riaiiG~NG~GKSTLlk~l~g  370 (530)
T COG0488         321 VLEFENVSKGYDGGRLLLKDLSFRIDRGD-----RIAIVGPNGAGKSTLLKLLAG  370 (530)
T ss_pred             eEEEeccccccCCCceeecCceEEecCCC-----EEEEECCCCCCHHHHHHHHhh
Confidence            4566677777743  47788999999888     8999999999999999 6644

>PLN03140 ABC transporter G family member; Provisional

Probab=97.88  E-value=2.7e-06  Score=85.39  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ...++.++++.+++|+     +++|+||||||||||+ ++.+.
T Consensus       177 ~~~IL~~vs~~i~~Ge-----~~~llGpnGSGKSTLLk~LaG~  214 (1470)
T PLN03140        177 KLTILKDASGIIKPSR-----MTLLLGPPSSGKTTLLLALAGK  214 (1470)
T ss_pred             cceeccCCeEEEeCCe-----EEEEEcCCCCCHHHHHHHHhCC
Confidence            3557788888888777     8999999999999999 66664

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.84  E-value=6.8e-06  Score=70.07  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC---------C---cceeecCHHHHHH
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD---------G---KAYHFVTRADMEE  117 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~---------G---~~y~fvs~~~f~~  117 (166)
                      .+++.+++|+||+|||||+  |..... .-...||       ||||..+--.++         |   .+++.++.++...
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~-~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~  241 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELN-QKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQ  241 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhh-hhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHH
Confidence            4669999999999999999  554322 2233333       677765432221         1   1333456666554


Q ss_pred             HHHcCCccceeeehhh-------hcCCChHHHHHHHhh
Q psy18088        118 RIAAGEFLEHAEFAAN-------LYGTSQCGRQNGRNY  148 (166)
Q Consensus       118 ~~~~~~fle~~~~~gn-------~yG~~~~~I~~ile~  148 (166)
                           .|.|+.++.+.       +-+-|.++++++++.
T Consensus       242 -----~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~  274 (301)
T COG1162         242 -----AFPEFAELARQCKFRDCTHTHEPGCAVKAAVEE  274 (301)
T ss_pred             -----HhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHc
Confidence                 34444444322       455677889988874

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.83  E-value=2.4e-06  Score=72.85  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=38.3

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEee-----------cCCCCCCccCCcceeecC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHT-----------TRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~T-----------TR~p~~ge~~G~~y~fvs  111 (166)
                      +++|+|+||+|||||.|.  |...    ++.+|+.+           |.+|+..|..++.||+++
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~----~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid   64 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG----KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVD   64 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh----CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeee
Confidence            348999999999999999  5544    24677755           999988888888888764

>KOG0054|consensus

Probab=97.81  E-value=1.8e-05  Score=78.78  Aligned_cols=83  Identities=18%  Similarity=0.257  Sum_probs=60.7

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHHHH
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEERI  119 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~~~  119 (166)
                      .+.++++.|++|+     .++|+||.|||||+|+  ++.+.+             ..+|+  ++|. .-++++.      
T Consensus       536 tL~dIn~~i~~G~-----lvaVvG~vGsGKSSLL~AiLGEm~-------------~~sG~v~v~gs-iaYv~Q~------  590 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQ-----LVAVVGPVGSGKSSLLSAILGEMP-------------KLSGSVAVNGS-VAYVPQQ------  590 (1381)
T ss_pred             cccceeEEecCCC-----EEEEECCCCCCHHHHHHHHhcCcc-------------cccceEEEcCe-EEEeccc------
Confidence            5677788888887     8999999999999999  887776             45565  3553 2234433      


Q ss_pred             HcCCccceeeehhh-hcCCCh--HHHHHHHhhccCChh
Q psy18088        120 AAGEFLEHAEFAAN-LYGTSQ--CGRQNGRNYLIFNTL  154 (166)
Q Consensus       120 ~~~~fle~~~~~gn-~yG~~~--~~I~~ile~v~L~~~  154 (166)
                         ..+..+++++| .+|.+.  +.=+++++.+.|++.
T Consensus       591 ---pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~D  625 (1381)
T KOG0054|consen  591 ---PWIQNGTVRENILFGSPYDEERYDKVIKACALKKD  625 (1381)
T ss_pred             ---cHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhH
Confidence               45777899999 788764  456778887776654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.80  E-value=1.2e-05  Score=80.85  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=30.1

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++.++++.+++|+     +++|+||+|||||||+ ++.+.-.
T Consensus       440 ~~l~~i~l~i~~G~-----~~~I~G~~GsGKSTLl~~l~G~~~  477 (1490)
T TIGR01271       440 PVLKNISFKLEKGQ-----LLAVAGSTGSGKSSLLMMIMGELE  477 (1490)
T ss_pred             cceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            35678888888877     8999999999999999 6665443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0061|consensus

Probab=97.76  E-value=1.6e-05  Score=73.72  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE  117 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~  117 (166)
                      ..++.+++...++||     +.+|+||||||||||+  |..+.+..          ....|+  +||+.   .+...+..
T Consensus        43 k~iL~~vsg~~~~Ge-----l~AimG~SGsGKtTLL~~Lagr~~~~----------~~~~G~ilvNG~~---~~~~~~~~  104 (613)
T KOG0061|consen   43 KTILKGVSGTAKPGE-----LLAIMGPSGSGKTTLLNALAGRLNGG----------LKLSGEILLNGRP---RDSRSFRK  104 (613)
T ss_pred             ceeeeCcEEEEecCe-----EEEEECCCCCCHHHHHHHHhccccCC----------CcceEEEEECCcc---Cchhhhhh
Confidence            556777766666565     8999999999999999  55554420          012343  35532   23444443


Q ss_pred             H----HHcCCccceeeehhh
Q psy18088        118 R----IAAGEFLEHAEFAAN  133 (166)
Q Consensus       118 ~----~~~~~fle~~~~~gn  133 (166)
                      .    .|.+.++...++.+.
T Consensus       105 ~s~yV~QdD~l~~~LTV~Et  124 (613)
T KOG0061|consen  105 ISGYVQQDDVLLPTLTVRET  124 (613)
T ss_pred             eeEEEcccccccccccHHHH
Confidence            2    355667777777765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.73  E-value=5.8e-05  Score=69.72  Aligned_cols=103  Identities=20%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccCCcc
Q psy18088         30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKA  106 (166)
Q Consensus        30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~G~~  106 (166)
                      ...+++++-..  ....+.+.++.|++|+     -+.|.||||||||||+ .++++-.-....+..    |     .+.+
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~-----~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~----P-----~~~~  457 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGE-----RLLITGESGAGKTSLLRALAGLWPWGSGRISM----P-----ADSA  457 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCC-----EEEEECCCCCCHHHHHHHHhccCccCCCceec----C-----CCCc
Confidence            45555555444  2345677788888888     8999999999999999 777754211111111    1     1223


Q ss_pred             eeecCHHHHHHHHHcCCccceeeehhh-hcC-----CChHHHHHHHhhccCChhH
Q psy18088        107 YHFVTRADMEERIAAGEFLEHAEFAAN-LYG-----TSQCGRQNGRNYLIFNTLA  155 (166)
Q Consensus       107 y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG-----~~~~~I~~ile~v~L~~~~  155 (166)
                      ..|+++         ..|++.++..+- .|.     .+.+++.+++..|+|++..
T Consensus       458 ~lflpQ---------~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~  503 (604)
T COG4178         458 LLFLPQ---------RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA  503 (604)
T ss_pred             eEEecC---------CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence            344433         356666666554 343     4557788888888887543

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.71  E-value=2.7e-05  Score=62.74  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      -+.+.|..|..||     ++=++||+|||||||+ -+++.-             |.+|++  +|.+.
T Consensus        14 RL~plS~qv~aGe-----~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l   62 (248)
T COG4138          14 RLGPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPL   62 (248)
T ss_pred             cccccccccccce-----EEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcch
Confidence            3456677777777     8999999999999999 555543             456764  67654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.70  E-value=6.9e-05  Score=66.73  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEE  117 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~  117 (166)
                      ..+.+++|+.+++|+     .+.|+|.||||||||-  |+...+.              .|++  +|.+..-.+..++..
T Consensus       300 ~~AVd~isl~L~~gq-----TlGlVGESGSGKsTlG~allrL~~s--------------~G~I~F~G~~i~~~~~~~mrp  360 (534)
T COG4172         300 LRAVDGISLTLRRGQ-----TLGLVGESGSGKSTLGLALLRLIPS--------------QGEIRFDGQDIDGLSRKEMRP  360 (534)
T ss_pred             eEEeccceeEecCCC-----eEEEEecCCCCcchHHHHHHhhcCc--------------CceEEECCccccccChhhhhh
Confidence            455678889999888     8999999999999999  6655542              3653  566655555555544


Q ss_pred             HHHcCC---------ccceeeehh---h----h-cCCCh----HHHHHHHhhccCChhHHhhCCccC
Q psy18088        118 RIAAGE---------FLEHAEFAA---N----L-YGTSQ----CGRQNGRNYLIFNTLAAKCLPTVF  163 (166)
Q Consensus       118 ~~~~~~---------fle~~~~~g---n----~-yG~~~----~~I~~ile~v~L~~~~~~~l~~~~  163 (166)
                      +...=.         +-+-.++..   .    + -+.+.    ..+.++++-++|++..+.++++=|
T Consensus       361 lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF  427 (534)
T COG4172         361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF  427 (534)
T ss_pred             hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence            322211         111111110   0    0 12222    345556667899998888776644

>PLN02748 tRNA dimethylallyltransferase

Probab=97.67  E-value=2.3e-05  Score=70.54  Aligned_cols=53  Identities=11%  Similarity=0.004  Sum_probs=37.7

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs  111 (166)
                      .+++|+|+||+|||||+|.  |...+..        -+..-....|.+|...|..|+.||.++
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid   83 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLG   83 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEe
Confidence            3558999999999999999  5444331        011223345999988888998887654

>KOG0059|consensus

Probab=97.67  E-value=3.8e-05  Score=73.82  Aligned_cols=112  Identities=16%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             ceEEeeecceeeec--CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRTCIS--ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      ..+.+++++.++..  +..+.++.|+++|     .+++.||+|+||||++ ++.+.-.            |+.|+  ++|
T Consensus       564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~ge-----cfgLLG~NGAGKtT~f~mltG~~~------------~t~G~a~i~g  626 (885)
T KOG0059|consen  564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGE-----CFGLLGVNGAGKTTTFKMLTGETK------------PTSGEALIKG  626 (885)
T ss_pred             eEEEcceeeeecchhhhhcceEEEecCCc-----eEEEecCCCCCchhhHHHHhCCcc------------CCcceEEEec
Confidence            56666777666533  7889999999999     6999999999999999 6666554            77786  355


Q ss_pred             cceee-cCHHH----HHHHHHcCCccceeeehhh------hcCCChHHH----HHHHhhccCChhHHhh
Q psy18088        105 KAYHF-VTRAD----MEERIAAGEFLEHAEFAAN------LYGTSQCGR----QNGRNYLIFNTLAAKC  158 (166)
Q Consensus       105 ~~y~f-vs~~~----f~~~~~~~~fle~~~~~gn------~yG~~~~~I----~~ile~v~L~~~~~~~  158 (166)
                      .+... .+.++    +..-.|.+.+.+..+-.++      ..|++..++    ++.++.++|.+.+-+.
T Consensus       627 ~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~  695 (885)
T KOG0059|consen  627 HDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ  695 (885)
T ss_pred             CccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc
Confidence            54321 11111    2223444555555554443      467776444    4445567777766554

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.64  E-value=3.3e-05  Score=59.95  Aligned_cols=24  Identities=17%  Similarity=0.033  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++|+|.|||||||||+.  |....+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            568999999999999999  555544

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.58  E-value=6.1e-05  Score=62.15  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=43.2

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD  114 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~  114 (166)
                      .+++...++.+.+++     |++|+|-+|+|||||+ .++++-.            |..|.  ++|++..-.+...
T Consensus        19 k~~l~~~sL~I~~g~-----FvtViGsNGAGKSTlln~iaG~l~------------~t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101          19 KRALNGLSLEIAEGD-----FVTVIGSNGAGKSTLLNAIAGDLK------------PTSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             HHHHhcCceeecCCc-----eEEEEcCCCccHHHHHHHhhCccc------------cCCceEEECceecccCCHHH
Confidence            556777888887777     9999999999999999 7777654            77886  4887765444443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.53  E-value=3.5e-05  Score=77.23  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=30.6

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..++.+.++.+++|+     +++|+||||||||||+ ++.+.
T Consensus        74 ~~iL~~vs~~i~~Ge-----~~aIlG~nGsGKSTLLk~LaG~  110 (1394)
T TIGR00956        74 FDILKPMDGLIKPGE-----LTVVLGRPGSGCSTLLKTIASN  110 (1394)
T ss_pred             ceeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCC
Confidence            456788888888888     8999999999999999 66664

>PLN02165 adenylate isopentenyltransferase

Probab=97.53  E-value=3.3e-05  Score=66.88  Aligned_cols=50  Identities=14%  Similarity=-0.027  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccc-ccccc--------eeeeEEeecCCCCCCccCCccee
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLR-TVLDR--------FGFSVSHTTRGPRPGEVDGKAYH  108 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~  108 (166)
                      .+++++|+||+|||||||. .++ .+...        +.......|.+|...+..|..||
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hh  101 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHH  101 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChh
Confidence            3558999999999999999 444 33311        11223345777766666666543

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.46  E-value=4.8e-05  Score=54.80  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.|||||||||+. .++.
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999 4444

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.46  E-value=3.8e-05  Score=59.78  Aligned_cols=20  Identities=20%  Similarity=0.179  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -|+|+||+|||||||. .+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999 5554

>PTZ00243 ABC transporter; Provisional

Probab=97.39  E-value=5.7e-05  Score=76.42  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=29.0

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++++.+++|+     +++|+||+|||||||+ ++.+.-
T Consensus       675 iL~~isl~i~~G~-----~~~IiG~nGsGKSTLL~~i~G~~  710 (1560)
T PTZ00243        675 LLRDVSVSVPRGK-----LTVVLGATGSGKSTLLQSLLSQF  710 (1560)
T ss_pred             eEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence            5667788888777     8999999999999999 665543

>TIGR00235 udk uridine kinase

Probab=97.39  E-value=7e-05  Score=59.69  Aligned_cols=22  Identities=18%  Similarity=-0.194  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||||||||||+ .+..
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG0927|consensus

Probab=97.39  E-value=0.00019  Score=65.63  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=21.7

Q ss_pred             cCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +...-+++|||+|+|||||+ |+-+.-.
T Consensus       414 d~~srvAlVGPNG~GKsTLlKl~~gdl~  441 (614)
T KOG0927|consen  414 DLDSRVALVGPNGAGKSTLLKLITGDLQ  441 (614)
T ss_pred             CcccceeEecCCCCchhhhHHHHhhccc
Confidence            34458999999999999999 7766554

>KOG0060|consensus

Probab=97.39  E-value=0.00019  Score=66.09  Aligned_cols=34  Identities=29%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.++.|.+|.     -+.|.||||||||+|+ .++++-
T Consensus       451 ie~Ls~~V~~g~-----~LLItG~sG~GKtSLlRvlggLW  485 (659)
T KOG0060|consen  451 IENLSLEVPSGQ-----NLLITGPSGCGKTSLLRVLGGLW  485 (659)
T ss_pred             eeeeeeEecCCC-----eEEEECCCCCchhHHHHHHhccc
Confidence            445666666665     8999999999999999 777754

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=4.1e-05  Score=65.61  Aligned_cols=49  Identities=20%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEee-----------cCCCCCCccCCcceeecC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHT-----------TRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~T-----------TR~p~~ge~~G~~y~fvs  111 (166)
                      .++++|+||++||||.|.  |...+..   .+|+.+           |.+|...|..|+.||.++
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~---eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliD   64 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGG---EIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLID   64 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCC---cEEecchhhhcCCCcccCCCCCHHHHcCCCEEEec
Confidence            458999999999999999  7766654   455543           888988888888776543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.38  E-value=0.0001  Score=60.75  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=52.8

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC--------Cc---ceeecCHHHHHHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD--------GK---AYHFVTRADMEERI  119 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~--------G~---~y~fvs~~~f~~~~  119 (166)
                      ++.++++|+||+|||||+  |+.... .-...++       ||||....-..+        |.   +...++.+++..  
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~-~~t~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~~~~l~~~~~~~~~~--  196 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVK-QQVNDISSKLGLGKHTTTHVELFHFHGGLIADTPGFNEFGLWHLEPEQLTQ--  196 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhh-ccccceeccCCCCCCcCCceEEEEcCCcEEEeCCCccccCCCCCCHHHHHH--
Confidence            458999999999999999  554422 1122333       577755322222        11   112233333332  


Q ss_pred             HcCCccceeeehh-----h--hcCCChHHHHHHHhhccCChhHHhhCCc
Q psy18088        120 AAGEFLEHAEFAA-----N--LYGTSQCGRQNGRNYLIFNTLAAKCLPT  161 (166)
Q Consensus       120 ~~~~fle~~~~~g-----n--~yG~~~~~I~~ile~v~L~~~~~~~l~~  161 (166)
                         .|.|...+.+     |  +-.-|.++|+++++.=.+.+...+.+..
T Consensus       197 ---~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~  242 (245)
T TIGR00157       197 ---GFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEISEWRYENYLK  242 (245)
T ss_pred             ---hCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHH
Confidence               3333333322     2  4456779999998865556666555443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.37  E-value=0.00011  Score=48.89  Aligned_cols=17  Identities=24%  Similarity=0.186  Sum_probs=16.0

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.|.||+|||||||+
T Consensus        24 ~~tli~G~nGsGKSTll   40 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLL   40 (62)
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            37999999999999999

>KOG0066|consensus

Probab=97.32  E-value=0.00017  Score=65.15  Aligned_cols=33  Identities=33%  Similarity=0.410  Sum_probs=25.5

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV  102 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~  102 (166)
                      ++..-|+|+||+|+|||||+ |+-+.-+            |..||.
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~------------P~~GE~  644 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD------------PNDGEL  644 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCCC------------CCcchh
Confidence            45558999999999999999 5544444            777875

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.30  E-value=0.00014  Score=60.88  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=21.3

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +.+++..+.     .+.+++|.|+||||||||+
T Consensus        11 l~~v~~~ip-----~g~~~~vtGvSGsGKStL~   38 (261)
T cd03271          11 LKNIDVDIP-----LGVLTCVTGVSGSGKSSLI   38 (261)
T ss_pred             CCCceeecc-----CCcEEEEECCCCCchHHHH
Confidence            334454444     4559999999999999999

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.25  E-value=0.00013  Score=58.36  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++++|+||||+|||||+ .+..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            459999999999999999 5553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.24  E-value=0.00012  Score=58.28  Aligned_cols=22  Identities=18%  Similarity=-0.053  Sum_probs=18.4

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+ +++|+||||||||||+ .+.+
T Consensus        22 ~g-~~~i~G~nGsGKStll~al~~   44 (197)
T cd03278          22 PG-LTAIVGPNGSGKSNIIDAIRW   44 (197)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHH
Confidence            35 7999999999999999 5543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.24  E-value=0.00019  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.149  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      ++.+.|+||+|+||||++  ++.....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            347999999999999999  5555443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.23  E-value=7.5e-05  Score=53.65  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCH
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTR  112 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~  112 (166)
                      |+|+|++|+|||||+  |+.... .-....+.+|+.+..+.  .++..+.++|-
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDt   54 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDT   54 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeC
Confidence            789999999999999  664322 12233355666664332  45555555443

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.23  E-value=0.00014  Score=57.09  Aligned_cols=23  Identities=9%  Similarity=-0.015  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      |++++|+||||||||||+ .+.+.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~   26 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAAL   26 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            448999999999999999 65553

>KOG0064|consensus

Probab=97.22  E-value=0.00041  Score=63.65  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceee
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGF   88 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~   88 (166)
                      ....+|.|.+|-     -+.|.||+|||||+|. +++++--.+..
T Consensus       498 v~~Ltf~i~~G~-----hLLItGPNGCGKSSLfRILggLWPvy~g  537 (728)
T KOG0064|consen  498 VPKLTFQIEPGM-----HLLITGPNGCGKSSLFRILGGLWPVYNG  537 (728)
T ss_pred             ecceeEEecCCc-----eEEEECCCCccHHHHHHHHhccCcccCC
Confidence            445667777666     6999999999999999 88876433433

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.22  E-value=0.00014  Score=57.71  Aligned_cols=21  Identities=19%  Similarity=-0.108  Sum_probs=17.9

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.+|+|.||||||||||. .+.
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~   27 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIY   27 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            448999999999999999 443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.20  E-value=0.00021  Score=64.50  Aligned_cols=50  Identities=24%  Similarity=0.272  Sum_probs=41.7

Q ss_pred             eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .++|..-...+++..+.|..|++..+.+|+++||+|-||||++ ++++.-.
T Consensus       342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik  392 (591)
T COG1245         342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK  392 (591)
T ss_pred             eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc
Confidence            5566666666777788899999999999999999999999999 7776443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.18  E-value=0.00016  Score=53.35  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +|+++||+||||||++  |....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            4889999999999999  55343

...

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.18  E-value=0.0002  Score=57.39  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.+++|+||+|||||||+ +|.
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe
Confidence            348999999999999999 665

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.18  E-value=0.00031  Score=62.67  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             ceEEeeeccee-----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc-
Q psy18088         30 ITVRILLNYRT-----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE-  101 (166)
Q Consensus        30 ~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge-  101 (166)
                      .+..++++..|     ...+..++||+|..||     .++|+|.||||||--+  ++..+|.   ....|    | +|. 
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE-----tlAlVGESGSGKSvTa~sim~LLp~---~~~~~----~-sg~i   72 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE-----TLALVGESGSGKSVTALSILGLLPS---PAAAH----P-SGSI   72 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCC-----EEEEEecCCCCccHHHHHHHHhcCC---CcccC----c-ccee
Confidence            56677888777     3778889999999999     8999999999999776  6655554   00000    1 233 


Q ss_pred             -cCCcceeecCHHHHHH
Q psy18088        102 -VDGKAYHFVTRADMEE  117 (166)
Q Consensus       102 -~~G~~y~fvs~~~f~~  117 (166)
                       .+|.+..-.+..+++.
T Consensus        73 ~f~G~dll~~se~~lr~   89 (534)
T COG4172          73 LFDGEDLLAASERQLRG   89 (534)
T ss_pred             EEcChhhhcCCHHHHhh
Confidence             3666665566666554

>PRK08233 hypothetical protein; Provisional

Probab=97.17  E-value=0.0002  Score=54.90  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCChhhhc--cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .+|+|.|++|||||||.  |...++
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            48999999999999999  555554

>PRK06762 hypothetical protein; Provisional

Probab=97.14  E-value=0.00021  Score=54.55  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=19.7

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++++|+|.|++||||||+.  |...+
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999  44444

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.13  E-value=0.00019  Score=58.03  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=18.0

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.+++|+||+|||||||+ .|.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            348999999999999999 554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK06761 hypothetical protein; Provisional

Probab=97.13  E-value=0.00075  Score=57.22  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecC--CCCCCccCCcceeecCHHHHHHHHHc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTR--GPRPGEVDGKAYHFVTRADMEERIAA  121 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR--~p~~ge~~G~~y~fvs~~~f~~~~~~  121 (166)
                      +++|+|.||+||||||++  |...+.. .+..+...+.  .+.+.+..+..+  .+.+++...+..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~   65 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSN   65 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHh
Confidence            458999999999999999  5544443 2333333322  223344555333  366666665433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.13  E-value=0.00023  Score=55.95  Aligned_cols=24  Identities=29%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +..++|+||+||||||++  |+...+
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            348999999999999999  555544

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.09  E-value=0.00025  Score=55.49  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~   98 (166)
                      +++|+|.||+||||||+. .+. .+.. .+ ...++++.|.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~   41 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPG   41 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCC
Confidence            569999999999999999 554 4432 22 2234566665

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.07  E-value=0.00034  Score=58.10  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeec
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTT   94 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TT   94 (166)
                      -++|+|+||||||||+  |+...+..|..++..|.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~   49 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP   49 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence            4789999999999999  88777777866666653

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.05  E-value=0.00029  Score=54.28  Aligned_cols=20  Identities=20%  Similarity=-0.027  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++|+|+||+||||||+. .+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999 555

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.04  E-value=0.0003  Score=57.64  Aligned_cols=18  Identities=17%  Similarity=0.034  Sum_probs=16.5

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +.+++|+||||||||||+
T Consensus        25 ~~~~~IvG~NGsGKStll   42 (251)
T cd03273          25 PQFNAITGLNGSGKSNIL   42 (251)
T ss_pred             CCeEEEECCCCCCHHHHH
Confidence            348999999999999999

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.02  E-value=0.00022  Score=56.12  Aligned_cols=16  Identities=25%  Similarity=-0.022  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +|+|+||||||||||.
T Consensus         1 iigi~G~~GsGKSTl~   16 (198)
T cd02023           1 IIGIAGGSGSGKTTVA   16 (198)
T ss_pred             CEEEECCCCCCHHHHH
Confidence            4899999999999999

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07261 topology modulation protein; Provisional

Probab=97.00  E-value=0.00027  Score=55.03  Aligned_cols=19  Identities=21%  Similarity=0.265  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      -|+|+|+||||||||. .+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~   21 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLS   21 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            4899999999999999 443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.00  E-value=0.00028  Score=55.99  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++.++|+||+|+||||++ .+.
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHH
Confidence            348999999999999999 554

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.97  E-value=0.00039  Score=53.61  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~   99 (166)
                      +|+|.||.||||||+. ++. .+. .-+..+ .+++.|..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~   39 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLE-ARGYEV-VLTREPGG   39 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence            7999999999999999 544 443 222233 34555554

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>KOG3354|consensus

Probab=96.97  E-value=0.0006  Score=53.72  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERI  119 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~  119 (166)
                      .++++|+|||||||+.  |...+.-               .-++|-|||  +.+..+.|-
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~---------------~F~dgDd~H--p~~NveKM~   56 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGL---------------KFIDGDDLH--PPANVEKMT   56 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCC---------------cccccccCC--CHHHHHHHh
Confidence            7999999999999999  5544431               224666766  555556553

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.97  E-value=0.00035  Score=56.35  Aligned_cols=19  Identities=16%  Similarity=0.002  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +++|+||+|+||||++ .|.
T Consensus        27 i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          27 FSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            8999999999999999 543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK12288 GTPase RsgA; Reviewed

Probab=96.97  E-value=0.00033  Score=60.83  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +++++|+|+||+|||||+  |+..
T Consensus       205 ~ki~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        205 GRISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             hCCEEEECCCCCCHHHHHHHhccc
Confidence            347999999999999999  6644

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.96  E-value=0.00031  Score=55.37  Aligned_cols=22  Identities=18%  Similarity=0.042  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +|+|.|||||||||+.  |...+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            5899999999999999  554443

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.94  E-value=0.00034  Score=55.35  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|||||||||+.  |.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999  5544

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.94  E-value=0.00041  Score=53.60  Aligned_cols=25  Identities=20%  Similarity=0.060  Sum_probs=19.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .+.+|+|.|++||||||+.  |...+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3459999999999999999  444443

>KOG0065|consensus

Probab=96.94  E-value=0.00035  Score=69.26  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=27.0

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+++.+.+-.+++|.     +.+|+|+||+|||||+ ++++
T Consensus       804 ~qLL~~V~G~~kPG~-----LTALMG~SGAGKTTLLdvLA~  839 (1391)
T KOG0065|consen  804 RQLLNNVSGAFKPGV-----LTALMGESGAGKTTLLDVLAG  839 (1391)
T ss_pred             eEhhhcCceEecCCc-----eeehhcCCCCchHHHHHHHhc
Confidence            445666665556555     8999999999999999 6665

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.93  E-value=0.00073  Score=55.33  Aligned_cols=25  Identities=16%  Similarity=-0.092  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      ..+|+|.|+|||||||+.  |...++.
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~   34 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGV   34 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            348999999999999999  6666653

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.93  E-value=0.00036  Score=55.15  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .++++|+|+||||||||+  |+..+.
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh
Confidence            448999999999999998  665543

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.92  E-value=0.00029  Score=57.19  Aligned_cols=16  Identities=19%  Similarity=0.057  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +|+|.||||||||||+
T Consensus         1 IigI~G~sGSGKTTla   16 (220)
T cd02025           1 IIGIAGSVAVGKSTTA   16 (220)
T ss_pred             CEEeeCCCCCCHHHHH
Confidence            4789999999999999

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.91  E-value=0.00042  Score=56.14  Aligned_cols=24  Identities=8%  Similarity=-0.069  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +.+++|+||||||||||.  |...++
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            449999999999999999  444443

>PTZ00301 uridine kinase; Provisional

Probab=96.91  E-value=0.00036  Score=56.56  Aligned_cols=21  Identities=19%  Similarity=0.090  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .+|+|.||||||||||.  |...
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~   26 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSE   26 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHH
Confidence            48999999999999999  5443

>PRK12289 GTPase RsgA; Reviewed

Probab=96.91  E-value=0.00049  Score=59.96  Aligned_cols=38  Identities=26%  Similarity=0.144  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPR   98 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~   98 (166)
                      +++++|+|+||+|||||+  |+.... .-...++       ||||...
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~  218 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVE  218 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeE
Confidence            347999999999999999  664432 1223444       4888653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.89  E-value=0.00089  Score=56.39  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCcc---------CCc---ceeecCHHHHHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEV---------DGK---AYHFVTRADMEER  118 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~---------~G~---~y~fvs~~~f~~~  118 (166)
                      ++.++++||||+|||||+  |+...... ...++       |||+....-..         .|.   ++..++.++....
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~-~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~  239 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLA-TGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHY  239 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhcc-ccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHH
Confidence            368999999999999999  55443211 11222       45654321111         122   1123444444432


Q ss_pred             HHc-CCccceeeehh-hhcCCChHHHHHHHhhccCChhHHhhC
Q psy18088        119 IAA-GEFLEHAEFAA-NLYGTSQCGRQNGRNYLIFNTLAAKCL  159 (166)
Q Consensus       119 ~~~-~~fle~~~~~g-n~yG~~~~~I~~ile~v~L~~~~~~~l  159 (166)
                      +.. ..+...-.+.+ .+...|.++|+++++-=.+.....+.+
T Consensus       240 f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y  282 (287)
T cd01854         240 FPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESY  282 (287)
T ss_pred             hHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            211 01122222332 144567788988887544455554443

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.89  E-value=0.00047  Score=50.57  Aligned_cols=16  Identities=31%  Similarity=0.372  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+++|++|+|||||+
T Consensus         3 ~i~l~G~~~~GKstli   18 (157)
T cd04164           3 KVVIVGKPNVGKSSLL   18 (157)
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999999

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PLN02796 D-glycerate 3-kinase

Probab=96.86  E-value=0.00053  Score=59.70  Aligned_cols=29  Identities=21%  Similarity=-0.009  Sum_probs=22.2

Q ss_pred             ccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         53 RSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        53 ~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|+...+-+|+|+||||||||||+ .+..
T Consensus        93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796         93 KDGDEIPPLVIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             ccCCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence            3455455668999999999999999 4444

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.86  E-value=0.00079  Score=59.19  Aligned_cols=23  Identities=13%  Similarity=-0.064  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .+.+++|+||+||||||++  |...
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3448999999999999999  5544

>PRK01889 GTPase RsgA; Reviewed

Probab=96.85  E-value=0.0006  Score=59.28  Aligned_cols=22  Identities=14%  Similarity=0.089  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.++|+|+||+|||||+ .+.+
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g  217 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLG  217 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            448999999999999999 4433

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.85  E-value=0.00047  Score=54.85  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++|+||+||||||++  |+...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            6899999999999999  666554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.85  E-value=0.00048  Score=54.64  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=22.0

Q ss_pred             CCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .++.+..++    +.++|.||+|+|||||+ .+.
T Consensus        20 ~~~~i~~~~----~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          20 LDIQLGENK----RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEECCCc----eEEEEECCCCCChHHHHHHHH
Confidence            455555442    48999999999999999 544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd01895 EngA2 EngA2 subfamily

Probab=96.85  E-value=0.00027  Score=52.51  Aligned_cols=52  Identities=25%  Similarity=0.271  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD  114 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~  114 (166)
                      -|+|+|++|+|||||+  |+.... ......+.||+......  .+|.++.+++.+.
T Consensus         4 ~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG   59 (174)
T cd01895           4 RIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAG   59 (174)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCC
Confidence            5899999999999999  655421 22233445555543332  3555566655543

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.85  E-value=0.00051  Score=49.22  Aligned_cols=19  Identities=21%  Similarity=0.109  Sum_probs=16.3

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|.|++|||||||+  |...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999  5444

...

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.83  E-value=0.0005  Score=58.43  Aligned_cols=21  Identities=19%  Similarity=0.088  Sum_probs=17.8

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +-+|+|.|||||||||++ ++.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~   83 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQ   83 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            348999999999999999 443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.82  E-value=0.00038  Score=52.94  Aligned_cols=19  Identities=21%  Similarity=0.216  Sum_probs=15.8

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |+|+||+||||||+. .+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAH   20 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            478999999999999 4444

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14527 adenylate kinase; Provisional

Probab=96.82  E-value=0.00059  Score=53.59  Aligned_cols=22  Identities=14%  Similarity=-0.025  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .+++|+|+||+||||||+. .++
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La   27 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLA   27 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            4569999999999999999 554

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.82  E-value=0.00048  Score=55.14  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++++++||+||||||.+  |...+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            358999999999999999  655543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.80  E-value=0.00063  Score=49.64  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=14.5

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      |+|+||+|||||||+
T Consensus         2 i~i~G~~~~GKssl~   16 (159)
T cd04159           2 ITLVGLQNSGKTTLV   16 (159)
T ss_pred             EEEEcCCCCCHHHHH
Confidence            789999999999999

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK14530 adenylate kinase; Provisional

Probab=96.79  E-value=0.00061  Score=54.57  Aligned_cols=23  Identities=22%  Similarity=-0.005  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++.|+|+||+||||||+. +++..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999 66543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.79  E-value=0.00057  Score=48.67  Aligned_cols=20  Identities=25%  Similarity=0.247  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhhhc--ccccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      |+|+|++|||||||+  |+...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            789999999999999  66553

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.76  E-value=0.0007  Score=53.62  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++|+|+||||||||. ++..
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~   46 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEE   46 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            448999999999999999 5544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.75  E-value=0.00071  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..|+|+||+||||||+. .++.
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>PRK06696 uridine kinase; Validated

Probab=96.72  E-value=0.00066  Score=54.78  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +.+|+|.|+||||||||.  |...++
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            448999999999999999  555554

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.72  E-value=0.00059  Score=45.46  Aligned_cols=19  Identities=21%  Similarity=0.037  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|.|++||||||+. .+..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            789999999999999 4443

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1384|consensus

Probab=96.71  E-value=0.00054  Score=59.21  Aligned_cols=51  Identities=12%  Similarity=0.044  Sum_probs=38.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeec
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFV  110 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fv  110 (166)
                      -++++|+||+|+|||-|.  |...++.-        +......+|.++...|..|+.+|.+
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLl   67 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLL   67 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHh
Confidence            468999999999999999  88777651        2223335688888888888876543

>PRK13975 thymidylate kinase; Provisional

Probab=96.71  E-value=0.00077  Score=52.60  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++|+|.|+.||||||+. +++.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~   24 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAE   24 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            569999999999999999 5554

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=96.70  E-value=0.00061  Score=61.09  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -+++++++.+++|+     .++|+|+||+||||++ ++.+
T Consensus       397 yvlr~vNL~ikpGd-----vvaVvGqSGaGKttllRmi~G  431 (593)
T COG2401         397 YVLRNLNLEIKPGD-----VVAVVGQSGAGKTTLLRMILG  431 (593)
T ss_pred             eeeeceeeEecCCC-----eEEEEecCCCCcchHHHHHHH
Confidence            35778888899888     8999999999999999 6665

>cd01855 YqeH YqeH

Probab=96.70  E-value=0.00046  Score=53.94  Aligned_cols=43  Identities=14%  Similarity=-0.013  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc-------cceeeeEEeecCCCCCCcc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL-------DRFGFSVSHTTRGPRPGEV  102 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~-------~~f~~~v~~TTR~p~~ge~  102 (166)
                      +..++|+|.+|+|||||+  |+...-       ..-....+.|||.+....+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~  178 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL  178 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec
Confidence            447999999999999999  655321       1122355567887755444

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.68  E-value=0.00087  Score=51.70  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=19.3

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+.+|+|+|++||||||+.  |...+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l   28 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKL   28 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3558999999999999999  44443

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.66  E-value=0.00066  Score=51.04  Aligned_cols=49  Identities=20%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             EEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cC-CcceeecCHHHH
Q psy18088         65 HVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VD-GKAYHFVTRADM  115 (166)
Q Consensus        65 LiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~-G~~y~fvs~~~f  115 (166)
                      |+|++|||||||+  |.....  .....+.||+.|..+.  .+ +..+.+++.+.+
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~   54 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGL   54 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEecccc
Confidence            5899999999999  554422  2223345666665553  34 666666665543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00436 era GTP-binding protein Era

Probab=96.65  E-value=0.00095  Score=55.36  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      +|+|+|+++||||||+  |+.... ......+.|||.+-.|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~   41 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISG   41 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEE
Confidence            5899999999999999  665432 1234556788865433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01858 NGP_1 NGP-1

Probab=96.65  E-value=0.00093  Score=50.72  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ..++++|+||+|||||+  |+..
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~  125 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSK  125 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcC
Confidence            36779999999999999  5543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK06547 hypothetical protein; Provisional

Probab=96.64  E-value=0.00095  Score=52.36  Aligned_cols=18  Identities=22%  Similarity=0.161  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      ..+|+|.||||||||||.
T Consensus        15 ~~~i~i~G~~GsGKTt~a   32 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLA   32 (172)
T ss_pred             CEEEEEECCCCCCHHHHH
Confidence            347888899999999999

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.62  E-value=0.00089  Score=53.32  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +++.|+|+||+|||||+|+  |..+
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~   26 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNG   26 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcC
Confidence            3558999999999999999  5544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01898 Obg Obg subfamily

Probab=96.61  E-value=0.001  Score=49.89  Aligned_cols=50  Identities=20%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCc-ceeecCHHH
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGK-AYHFVTRAD  114 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~-~y~fvs~~~  114 (166)
                      |+|+|++|||||||+  |....+  -....+.+|+.|..|.+  ++. .+.+++-+.
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG   57 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPG   57 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCc
Confidence            789999999999999  543322  11122345666654432  332 444444443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=96.61  E-value=0.00093  Score=50.48  Aligned_cols=16  Identities=38%  Similarity=0.449  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -++|+||+|||||||+
T Consensus        16 ~v~i~G~~g~GKStLl   31 (173)
T cd04155          16 RILILGLDNAGKTTIL   31 (173)
T ss_pred             EEEEEccCCCCHHHHH
Confidence            5999999999999999

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK15494 era GTPase Era; Provisional

Probab=96.60  E-value=0.0016  Score=56.12  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=39.2

Q ss_pred             CCCCCCCCcccccccCCc--EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHH
Q psy18088         44 ASGNPDSGIRSGRIHFFA--CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRA  113 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~--~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~  113 (166)
                      .+..+.+.++.|++...+  .|+|+|.+|||||||+  |+..... ...+-+.|||....+.  .++..+.|++.+
T Consensus        34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTp  108 (339)
T PRK15494         34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTP  108 (339)
T ss_pred             cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECC
Confidence            344445556666654322  7899999999999999  6644211 1123345676543332  244445555433

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.60  E-value=0.0009  Score=52.61  Aligned_cols=20  Identities=20%  Similarity=0.087  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  |+..
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~   23 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGR   23 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCC
Confidence            3899999999999999  5544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.59  E-value=0.00097  Score=56.10  Aligned_cols=24  Identities=25%  Similarity=0.088  Sum_probs=20.0

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+++++|+||+||||||++  |...+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4569999999999999999  55554

>PRK06217 hypothetical protein; Validated

Probab=96.59  E-value=0.00089  Score=52.30  Aligned_cols=19  Identities=21%  Similarity=-0.003  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      -|+|+|+||||||||. .++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~   22 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALA   22 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            4899999999999999 444

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.58  E-value=0.0011  Score=51.77  Aligned_cols=21  Identities=24%  Similarity=0.083  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.|+|+||+|||||||. .++.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHH
Confidence            37999999999999999 6654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.56  E-value=0.0014  Score=46.67  Aligned_cols=22  Identities=18%  Similarity=0.052  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++.+.|.||+|+|||+|+  +...
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999  4444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.56  E-value=0.0009  Score=48.13  Aligned_cols=20  Identities=30%  Similarity=0.162  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc-ccccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      |+|.||+|+|||+++ .+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            579999999999999 55443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.56  E-value=0.0011  Score=54.25  Aligned_cols=17  Identities=12%  Similarity=0.083  Sum_probs=16.0

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ++++|+||+|||||||+
T Consensus        23 ~~~~i~G~NGsGKStll   39 (247)
T cd03275          23 RFTCIIGPNGSGKSNLM   39 (247)
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            38999999999999999

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.55  E-value=0.00087  Score=50.18  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++|+||+||||||+. .+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhh
Confidence            3789999999999999 55543

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.54  E-value=0.0013  Score=50.94  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-+.|+||||+||||+.  |+..
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            457999999999999999  6665

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.54  E-value=0.0011  Score=52.96  Aligned_cols=18  Identities=33%  Similarity=0.257  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc-cc
Q psy18088         62 CILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li   79 (166)
                      +++|+||||+|||||+ .+
T Consensus        24 ~~~i~G~NGsGKTTLl~ai   42 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEAL   42 (204)
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            8999999999999999 54

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.52  E-value=0.0013  Score=54.89  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .++|+++||+||||||+.  |...+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence            458999999999999999  44444

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.52  E-value=0.0012  Score=59.78  Aligned_cols=24  Identities=13%  Similarity=-0.061  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+++++|+||+||||||++  |...+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHH
Confidence            3459999999999999999  55444

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.51  E-value=0.0024  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChhhhc-cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +-++|+||+|||||||+ .+.+.-
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~  135 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL  135 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc
Confidence            46899999999999999 555544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00089 era GTPase Era; Reviewed

Probab=96.49  E-value=0.0013  Score=54.88  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGP   97 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p   97 (166)
                      .+|+|+|++|||||||+  |+.... ......+.|||..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~   43 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHR   43 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCccccc
Confidence            37999999999999999  654422 1223345566654

>TIGR00017 cmk cytidylate kinase

Probab=96.49  E-value=0.0014  Score=53.34  Aligned_cols=21  Identities=14%  Similarity=-0.029  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+|+|.||+||||||+. +++.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAE   24 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999 6653

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.48  E-value=0.0015  Score=50.25  Aligned_cols=21  Identities=24%  Similarity=0.169  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      -+.|+||+|||||||. .+.+.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999 55543

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=96.48  E-value=0.0015  Score=50.09  Aligned_cols=17  Identities=18%  Similarity=0.045  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+||+|+|||||+
T Consensus        20 g~~vi~G~Ng~GKStil   36 (202)
T PF13476_consen   20 GLNVIYGPNGSGKSTIL   36 (202)
T ss_dssp             EEEEEEESTTSSHHHHH
T ss_pred             CcEEEECCCCCCHHHHH
Confidence            48999999999999999

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.46  E-value=0.0012  Score=50.21  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .|.|+||++||||||.  |+..+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            6899999999999999  877755

>PRK03839 putative kinase; Provisional

Probab=96.46  E-value=0.0013  Score=50.99  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|+|++||||||+. .++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999 5554

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=96.44  E-value=0.0015  Score=58.52  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=29.4

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+.+++++ +.+.+|+     .++|+||||+|||||+ +|.+.
T Consensus       142 Gi~aID~l-l~I~~GQ-----~igI~G~sGaGKSTLl~~I~g~  178 (434)
T PRK07196        142 GVNAINGL-LTIGKGQ-----RVGLMAGSGVGKSVLLGMITRY  178 (434)
T ss_pred             ceeeccce-EeEecce-----EEEEECCCCCCccHHHHHHhcc
Confidence            46777777 7777777     8999999999999999 66554

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.44  E-value=0.0024  Score=55.21  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .+.+++.. +.+.+|+     .++|+||||+|||||+ ++.+..
T Consensus        56 Gi~aiD~l-~~i~~Gq-----ri~I~G~sG~GKTtLl~~Ia~~~   93 (326)
T cd01136          56 GVRAIDGL-LTVGKGQ-----RLGIFAGSGVGKSTLLGMIARGT   93 (326)
T ss_pred             CcEEEeee-eEEcCCc-----EEEEECCCCCChHHHHHHHhCCC
Confidence            45565555 6666666     8999999999999999 665543

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.43  E-value=0.0015  Score=58.30  Aligned_cols=23  Identities=17%  Similarity=-0.051  Sum_probs=19.2

Q ss_pred             cCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ..+.+++|+||+|+||||++ .++
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA  212 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLA  212 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            34569999999999999999 444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		6e-19
1gky_A	187	Refined Structure Of The Complex Between Guanylate		2e-11
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		2e-11
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		1e-10
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		2e-10
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		2e-10
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		6e-10
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		9e-10
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		3e-09
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		3e-09
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		3e-09
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		4e-09
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		4e-09
3tvt_A	292	Structural Basis For Discs Large Interaction With P		1e-08
1z8f_A	228	Guanylate Kinase Double Mutant A58c, T157c From Myc		1e-08
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		1e-08
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		2e-08
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		7e-08
3tr0_A	205	Structure Of Guanylate Kinase (Gmk) From Coxiella B		1e-07
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		1e-07
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		8e-07
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		1e-06

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 46/54 (85%)
Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAEF+ NLYGTS+
Sbjct: 32  FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 85

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           D FGFSVS TTR PR GEV+GK Y+FV+  + +  I   EF+E A+F+ N YG++
Sbjct: 28  DSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 82

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           D FGFSVS TTR PR GEV+GK Y+FV+  + +  I   EF+E A+F+ N YG++
Sbjct: 27  DSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           D FGFSV  TTR PR GEV+GK Y+FV+  + +  I   EF+E A+F+ N YG++
Sbjct: 43  DSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 97

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 35/51 (68%)
Query: 89  SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           SVSHTTR PRPGEV G+ Y FV   + +E I+   FLEHAE   N YGTS+
Sbjct: 36  SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSR 86

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 35/51 (68%)
Query: 89  SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
           SVSHTTR PRPGEV G+ Y FV   + +E I+   FLEHAE   N YGTS+
Sbjct: 48  SVSHTTRQPRPGEVHGEHYFFVNHDEFKEXISRDAFLEHAEVFGNYYGTSR 98

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  E+DG+ YHFV +R  ME+ I A +F+E  ++ ++LYGTS
Sbjct: 554 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTS 609

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS----- 138
           ++F + V +TTR PR  E DGK YHF++  +M   I+A EFLE   +  N++GT      
Sbjct: 45  EKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVH 104
Query: 139 QCGRQN 144
           Q  +QN
Sbjct: 105 QIHKQN 110

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  E+DG+ YHFV +R  ME+ I A +F+E  ++ ++LYGTS
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  EVDG+ YHFVT R  ME+ I   +F+E  ++  +LYGTS
Sbjct: 129 DKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTS 184

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  E+DG+ YHFV +R  ME+ I A +F+E  ++ ++LYGTS
Sbjct: 134 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 189

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 71  FGKTSFLF-LRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
            GK++ +  LR  +    FSVS TTR PRPGEVDG  YHF+     ++ I  GE LE AE
Sbjct: 31  VGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAE 90
Query: 130 FAANLY 135
               L+
Sbjct: 91  IHGGLH 96

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 71  FGKTSFLF-LRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
            GK++ +  LR  +    FSVS TTR PRPGEVDG  YHF+     ++ I  GE LE AE
Sbjct: 34  VGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAE 93
Query: 130 FAANLY 135
               L+
Sbjct: 94  IHGGLH 99

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  EVDG+ YHFV +R  ME  I    F+E  ++  NLYGTS
Sbjct: 123 DKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178

>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 71  FGKTSFLF-LRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
            GK++ +  LR  +    FSVS TTR PRPGEVDG  YHF+     ++ I  GE LE AE
Sbjct: 34  VGKSTVVRCLRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAE 93
Query: 130 FAANLY 135
               L+
Sbjct: 94  IHGGLH 99

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 85  RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           RF FS+S TTR  R  E +G  Y+FV + D E ++  G+FLE  ++A N YGT
Sbjct: 39  RFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGT 91

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           F +S+S TTR PR GE DG  Y+F +R   E+ I  G+ LE+AE+  N YGT
Sbjct: 36  FDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIKDGKXLEYAEYVGNYYGT 87

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           DRF + + HTTR P+  E +GK Y+FV+   M + I+  E+LE+      +YGT 
Sbjct: 31  DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK 85

>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 72  GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
           GKTS +  L   L     S+SHTTR  RPG+ +G  Y F+     +  +  G FLEHA  
Sbjct: 19  GKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAXVKEGAFLEHATI 78
Query: 131 AANLYGTSQCG--RQ--NGRNYLI-FNTLAAKCLPTVFPFA 166
               YGT +    RQ   GR+ L+  +   A+ +  +FP A
Sbjct: 79  YERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPA 119

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           + +S+S TTR  R GEVDG  Y F TR   E  I   +F+E+AE+  N YGT
Sbjct: 34  YKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGT 85

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 86  FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           F FSVS TTR  R  E +G  Y+F+ +   E+++   +FLE+  +A N YGT
Sbjct: 51  FYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT 102

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 89  SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
           SVS TTR  R GE +GK Y+FV R +     + GE +EHAE   N YG 
Sbjct: 58  SVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGV 106
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	3e-34
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	4e-34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	4e-34
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	7e-34
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	5e-33
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	6e-33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	1e-32
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	1e-32
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	4e-30
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	4e-30
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	1e-29
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	3e-29
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	2e-27
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	7e-27
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-20
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	2e-07

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  118 bits (297), Expect = 3e-34
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           ++F + V +TTR PR  E DGK YHF++  +M   I+A EFLE   +  N++GT 
Sbjct: 45  EKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTK 99

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score =  117 bits (296), Expect = 4e-34
 Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L    +     FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAE
Sbjct: 16  GKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 75

Query: 130 FAANLYGTSQ 139
           F+ NLYGTS+
Sbjct: 76  FSGNLYGTSK 85

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  117 bits (295), Expect = 4e-34
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
           DRF + + HTTR P+  E +GK Y+FV+   M + I+  E+LE+      +YGT 
Sbjct: 31  DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK 85

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score =  114 bits (289), Expect = 5e-33
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK + +   L     RF FS+S TTR  R  E +G  Y+FV + D E ++  G+FLE  +
Sbjct: 24  GKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDK 83

Query: 130 FAANLYGTS 138
           +A N YGT 
Sbjct: 84  YANNFYGTL 92

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score =  115 bits (290), Expect = 6e-33
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK + +   L    + F FSVS TTR  R  E +G  Y+F+ +   E+++   +FLE+  
Sbjct: 35  GKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94

Query: 130 FAANLYGTS 138
           +A N YGT 
Sbjct: 95  YANNFYGTL 103

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score =  114 bits (288), Expect = 1e-32
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK +      +     F +S+S TTR PR GE DG  Y+F +R   E+ I  G+ LE+AE
Sbjct: 20  GKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAE 79

Query: 130 FAANLYGTSQ 139
           +  N YGT  
Sbjct: 80  YVGNYYGTPL 89

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score =  114 bits (288), Expect = 1e-32
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK +            + +S+S TTR  R GEVDG  Y F TR   E  I   +F+E+AE
Sbjct: 18  GKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77

Query: 130 FAANLYGTSQ 139
           +  N YGT  
Sbjct: 78  YVGNYYGTPV 87

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score =  108 bits (271), Expect = 4e-30
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 72  GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
           GK++ +  LR  +    FSVS TTR PRPGEVDG  YHF+     ++ I  GE LE AE 
Sbjct: 32  GKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91

Query: 131 AANLY--GTSQ 139
              L+  GT  
Sbjct: 92  HGGLHRSGTLA 102

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score =  108 bits (271), Expect = 4e-30
 Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 72  GKTSF---LFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
           GK+S    L     L     SVSHTTR PRPGEV G+ Y FV   + +E I+   FLEHA
Sbjct: 28  GKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87

Query: 129 EFAANLYGTSQ 139
           E   N YGTS+
Sbjct: 88  EVFGNYYGTSR 98

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score =  106 bits (267), Expect = 1e-29
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 72  GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
           GKTS +  L   L     S+SHTTR  RPG+ +G  Y F+     +  +  G FLEHA  
Sbjct: 19  GKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATI 78

Query: 131 AANLYGTSQ 139
               YGT +
Sbjct: 79  YERHYGTEK 87

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score =  106 bits (266), Expect = 3e-29
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GKT+     L    +    SVS TTR  R GE +GK Y+FV R +     + GE +EHAE
Sbjct: 39  GKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98

Query: 130 FAANLYGTSQ 139
              N YG  +
Sbjct: 99  VFGNFYGVPR 108

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  102 bits (257), Expect = 2e-27
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  E+DG+ YHFV+ R  ME+ I A +F+E  ++ ++LYGTS
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  101 bits (253), Expect = 7e-27
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  EVDG+ YHFV+ R  ME  I    F+E  ++  NLYGTS
Sbjct: 123 DKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 85.3 bits (210), Expect = 4e-20
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
           D+FG  V HTTR  R  E+DG+ YHFV+ R  ME+ I A +F+E  ++ ++LYGTS
Sbjct: 554 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTS 609

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 11/57 (19%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANL--YGTS 138
            RF   +S T R      +         +  +    +    +E +   ++L    + 
Sbjct: 171 HRFEGRISIT-RVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLAEVQSE 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.96
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.93
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	99.92
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.9
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.86
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.86
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.84
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.81
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.77
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.7
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.5
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.31
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.29
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.17
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.17
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.15
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.13
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.1
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.1
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.1
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.09
1g6h_A	257	High-affinity branched-chain amino acid transport	99.07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.06
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.02
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.02
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.99
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.96
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.93
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.92
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.92
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.88
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.88
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.83
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.78
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.69
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.69
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.68
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.43
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.42
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.4
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.16
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.1
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.06
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.06
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.05
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.01
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.97
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.95
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.9
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.85
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.8
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.77
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.75
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.74
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.73
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.68
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.68
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.66
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.65
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.64
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.63
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.63
2og2_A	359	Putative signal recognition particle receptor; nuc	97.62
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.61
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.61
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.61
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.58
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.57
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.54
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.54
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.53
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.51
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.5
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.49
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.49
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.48
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.46
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.44
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.43
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.4
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.39
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.36
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.36
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.35
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.33
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.31
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.3
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.3
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.3
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.29
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.29
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.28
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.27
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.26
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.25
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.24
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.21
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.19
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.19
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.18
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.17
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.17
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.17
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.17
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.16
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.15
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.15
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.14
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.14
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.13
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.12
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.12
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.11
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.1
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.09
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.07
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.05
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.05
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.03
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.03
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.03
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.01
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.0
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.96
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.95
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.94
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.94
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.94
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.94
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.91
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.91
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.9
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.88
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.87
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.86
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.83
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.82
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.8
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.78
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.77
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.77
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.77
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.76
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.76
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.76
1via_A	175	Shikimate kinase; structural genomics, transferase	96.75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.73
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.72
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.71
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.69
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.69
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.67
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.66
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.62
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.61
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.61
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.61
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.6
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.59
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.59
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.56
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.56
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.55
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.54
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.54
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.53
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.53
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.51
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.5
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.49
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.49
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.48
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.48
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.46
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.44
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.43
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.41
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.39
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.39
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.39
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.38
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.38
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.37
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.37
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.36
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.36
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.34
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.32
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.31
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.3
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.29
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.29
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.29
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.29
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.28
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.25
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.22
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.21
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.19
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.17
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.17
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.16
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.16
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.14
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.12
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.11
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.11
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.1
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.1
3bos_A	242	Putative DNA replication factor; P-loop containing	96.09
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.09
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.08
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.06
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.04
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.04
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.04
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.03
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.02
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.02
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.01
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.01
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.98
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.98
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.96
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.94
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.92
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.87
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.81
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.78
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.78
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.77
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.76
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.74
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.72
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.71
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.7
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.69
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.67
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.67
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.66
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.65
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.65
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.65
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.65
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.64
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.64
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.64
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.63
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.62
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.61
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.6
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.6
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.59
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.57
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.56
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.56
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.55
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.54
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.54
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.53
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.53
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.53
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.51
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.5
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.49
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.49
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.48
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.48
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.47
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.45
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.45
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.44
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.43
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.42
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.41
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.41
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.4
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.37
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.37
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.36
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.34
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.33
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.32
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.32
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.32
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.31
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.31
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.3
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.29
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.28
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.28
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.27
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.26
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.24
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.22
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.22
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.19
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.17
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.13
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.13
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.13
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.12
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.12
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.1
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.1
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.08
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.07
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	95.07
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.02
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.0
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.98
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.97
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.95
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.94
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.94
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.92
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.91
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	94.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.86
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	94.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.85
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.83
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.83
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.82
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.81
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.79
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.77
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.76
3co5_A	143	Putative two-component system transcriptional RES	94.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.67
1wxq_A	397	GTP-binding protein; structural genomics, riken st	94.67
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.67
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.64
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.62
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.62
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.62
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.6
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.6
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.58
2qgz_A	308	Helicase loader, putative primosome component; str	94.57
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.59
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.56
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.54
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.54
3ice_A	422	Transcription termination factor RHO; transcriptio	94.51
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.47
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.45
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.38
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.36
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.35
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.32
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.31
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.29
2fna_A	357	Conserved hypothetical protein; structural genomic	94.26
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.19
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.18
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.16
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.15
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.15
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.14
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.13
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.12
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.08
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.03
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.02
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.01
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.01
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.0
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.98
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	93.98
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	93.95
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.82
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.76
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.72
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.7
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.7
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	93.68

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.96  E-value=8.8e-31  Score=206.90  Aligned_cols=105  Identities=33%  Similarity=0.537  Sum_probs=99.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS  138 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~  138 (166)
                      |+|+|+||||||||||+  |++.+|+.|..+++||||+||+||++|++|+|+|.++|++++++|.|+||+++.||+||++
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            57999999999999999  8899998899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        139 QCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       139 ~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      +++++++++     +++++.++++.++..+|+
T Consensus        82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~  113 (186)
T 1ex7_A           82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPEL  113 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG
T ss_pred             cceeeehhhCCCEEEecCCHHHHHHHHHhccc
Confidence            999999987     577889999999887764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.93  E-value=3.5e-26  Score=182.17  Aligned_cols=107  Identities=27%  Similarity=0.397  Sum_probs=99.1

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      .+++++|+||||||||||+  |+..+++.|...+++|||+|++||++|++|+|++.++|.+++.++.|+||+++.+|+||
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG   97 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG   97 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence            4669999999999999999  66677767999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      ++++.++++++     +++++.++++.++..+|.
T Consensus        98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~  131 (197)
T 3ney_A           98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELS  131 (197)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTC
T ss_pred             cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCC
Confidence            99999999998     578889999999888775

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=99.92  E-value=3.1e-26  Score=192.17  Aligned_cols=133  Identities=29%  Similarity=0.411  Sum_probs=108.7

Q ss_pred             hhHHHHHHhcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCC
Q psy18088         19 TKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRG   96 (166)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~   96 (166)
                      |++...+++......+.++|+.|....           ..++|+|+|+||+   |+||.  |+..+|+.|+.+|+||||+
T Consensus        70 e~~~~~~~~~~~~~~~~~~YE~V~~~~-----------~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~  135 (292)
T 3tvt_A           70 ERKMRARDRSVKSEENVLSYEAVQRLS-----------INYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRP  135 (292)
T ss_dssp             HHHHHC----------CCCEEEEEEEE-----------CSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred             HHHHHHhhccccccccccchheEEecc-----------CCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccC
Confidence            444444445555666788999987651           2356799999995   99999  9999999999999999999


Q ss_pred             CCCCccCCcceeec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088         97 PRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus        97 p~~ge~~G~~y~fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      ||+||++|++|+|+ ++++|+.+++++.|+||+++.||+|||+.++|+++++     +++++.++++.|+..+|+
T Consensus       136 pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~  210 (292)
T 3tvt_A          136 KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLY  210 (292)
T ss_dssp             CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCC
T ss_pred             CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhccccccc
Confidence            99999999999999 8899999999999999999999999999999999998     678889999988766554

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.90  E-value=1.6e-24  Score=181.56  Aligned_cols=120  Identities=33%  Similarity=0.495  Sum_probs=104.3

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCccee
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYH  108 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~  108 (166)
                      .....++|++|.+..           ..++++|+|+||   ||+||+  |++.+|+.|..+++||||+||+||++|++|+
T Consensus        87 ~~~~~~~Ye~V~~~~-----------~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~  152 (295)
T 1kjw_A           87 REDSVLSYETVTQME-----------VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH  152 (295)
T ss_dssp             CCCCCCCEEEEEEEE-----------CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBE
T ss_pred             ccCCCCCcceeeeec-----------CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeE
Confidence            444567888886651           234679999999   699999  8888888899999999999999999999999


Q ss_pred             ec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCC--ccCC
Q psy18088        109 FV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLP--TVFP  164 (166)
Q Consensus       109 fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~--~~~p  164 (166)
                      |+ |.++|++++++|.|+||+++.||+|||++++|+++++     +++++.++++.++  .++|
T Consensus       153 Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~p  216 (295)
T 1kjw_A          153 FVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHP  216 (295)
T ss_dssp             ECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCC
T ss_pred             ecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCC
Confidence            99 9999999999999999999999999999999999998     5677888887773  4555

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.86  E-value=3.4e-22  Score=184.34  Aligned_cols=122  Identities=32%  Similarity=0.482  Sum_probs=107.1

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcce
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAY  107 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y  107 (166)
                      +.....++|++|...           +..++|+|+|+|||   |+||+  |+..+|+.|..+++||||+||+||++|++|
T Consensus       512 ~~~~~~~~Ye~V~~~-----------~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY  577 (721)
T 2xkx_A          512 GREDSVLSYETVTQM-----------EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDY  577 (721)
T ss_pred             cccccCCCceeeecc-----------cCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCcee
Confidence            455567789998765           12346799999996   99999  999998889999999999999999999999


Q ss_pred             eec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCC--ccCCC
Q psy18088        108 HFV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLP--TVFPF  165 (166)
Q Consensus       108 ~fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~--~~~p~  165 (166)
                      +|+ |+++|+++++++.|+||+++.||+|||++++|+++++     +++++.++++.|+  .+||+
T Consensus       578 ~Fv~s~~~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~  643 (721)
T 2xkx_A          578 HFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI  643 (721)
T ss_pred             EEecCHHHHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCE
Confidence            999 9999999999999999999999999999999999998     5778888888776  66663

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.86  E-value=4.1e-22  Score=153.80  Aligned_cols=106  Identities=26%  Similarity=0.382  Sum_probs=90.8

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      ++++++|+||||||||||+  |...++..+...+++|||+|+.|+++|++|+|++.++|..+++++.|++|+++.+|+||
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg   83 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   83 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence            4669999999999999999  55555545888999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      ++.+.++++++     +++++.+++..++..+|
T Consensus        84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~  116 (180)
T 1kgd_A           84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEF  116 (180)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTT
T ss_pred             ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCC
Confidence            99998998887     56778888888877654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=1.8e-21  Score=153.54  Aligned_cols=105  Identities=30%  Similarity=0.402  Sum_probs=92.8

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT  137 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~  137 (166)
                      +++++|+||||||||||+  |...++..+...+++|||+|+.||.+|++|+|++.+.|..++.++.|++|+++.+|+||+
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~   87 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGT   87 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCC
Confidence            559999999999999999  666666559999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        138 SQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      +.+.++++++     +++++.++...++..+|
T Consensus        88 ~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~  119 (208)
T 3tau_A           88 PLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMP  119 (208)
T ss_dssp             EHHHHHHHHHTTCCEEEECCHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCC
Confidence            9999998887     45666777776666555

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.81  E-value=2.2e-20  Score=146.23  Aligned_cols=106  Identities=29%  Similarity=0.432  Sum_probs=90.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      .+++|+|+||||||||||.  |...++..+...+++|||+|+.|+++|.+|+|++.++|..++.++.|+++.++.+|.||
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            3568999999999999999  66666644888999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      ++.+.++++++     +++...++...++..+|
T Consensus        91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~  123 (204)
T 2qor_A           91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKH  123 (204)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSS
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcC
Confidence            99988888876     34455667766655443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.78  E-value=8.7e-20  Score=143.15  Aligned_cols=101  Identities=45%  Similarity=0.623  Sum_probs=86.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-cc-cccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         59 FFACILHVDFAMFGKTSFL-FL-RTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li-~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      ++++++|+||||||||||+ ++ ..++..++..+++|||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|.||
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence            3568999999999999999 44 556667999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCL  159 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l  159 (166)
                      ++.++++++++     .+++++++...+
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~  110 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDVDLQGVRSI  110 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCcEEEECCHHHHHHH
Confidence            99888888886     234555555544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.77  E-value=2.1e-19  Score=144.19  Aligned_cols=106  Identities=36%  Similarity=0.473  Sum_probs=91.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccccc-ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLD-RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY  135 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~-~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~y  135 (166)
                      .|++++|+||||||||||+  |....+. .+...+++|||+|++++.+|++|+|++...|..+...+.|+||.++.+++|
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            3559999999999999999  4444542 477799999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        136 GTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       136 G~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      |++.+.++++++     +++|++++.+.+++.++
T Consensus        95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~  128 (219)
T 1s96_A           95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP  128 (219)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc
Confidence            999888888887     57888888887766554

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.70  E-value=6.4e-18  Score=134.34  Aligned_cols=116  Identities=28%  Similarity=0.336  Sum_probs=84.6

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-c-c-cccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHH
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-F-L-RTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEER  118 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-L-i-~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~  118 (166)
                      .+.+++.|+.+++|+     +++|+||||||||||+ + . ..++ .+...++++||+|+.|+++|.+|+|++...|..+
T Consensus        14 ~~~~~~~sl~v~~G~-----ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~   87 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGV-----ILVLSSPSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL   87 (231)
T ss_dssp             --------CCEECCC-----EEEEECSCC----CHHHHHHC-----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred             hcccCCCCcccCCCC-----EEEEECCCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccCCCeEEEecHHHhhhh
Confidence            567778899998877     8999999999999999 4 4 4455 4788899999999999999999999999999999


Q ss_pred             HHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088        119 IAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVF  163 (166)
Q Consensus       119 ~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~  163 (166)
                      ...+.++++.++.++.||++.+.++++++     +++++.++...++..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~  137 (231)
T 3lnc_A           88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMM  137 (231)
T ss_dssp             HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHS
T ss_pred             hhcCceehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhc
Confidence            99999999999999999998877877776     2455555555544433

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.65  E-value=1.1e-16  Score=127.26  Aligned_cols=114  Identities=26%  Similarity=0.371  Sum_probs=83.5

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHH
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIA  120 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~  120 (166)
                      ..+.++++.+.+|+     +++|+||||||||||+ ++.+ +|+.+...+++|||+++.++.++++|.|++...|..+..
T Consensus        11 ~~l~~isl~i~~G~-----~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           11 SSGLVPRGSMNNIY-----PLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             -----------CCC-----CEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             ccccCCceecCCCC-----EEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            34567888888777     7999999999999999 5544 453344477889999888888999999999999999988


Q ss_pred             cCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCc
Q psy18088        121 AGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPT  161 (166)
Q Consensus       121 ~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~  161 (166)
                      ++.+++++++.+|.||.+.+.++++++     +++++..+.+..+.
T Consensus        86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~  131 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKK  131 (218)
T ss_dssp             TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTT
T ss_pred             ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHH
Confidence            899999999999999998888888877     23445556555543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.58  E-value=1.2e-15  Score=117.77  Aligned_cols=103  Identities=28%  Similarity=0.406  Sum_probs=84.8

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT  137 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~  137 (166)
                      |.+++|+||||||||||+ ++. .+| .+......+||+++.++.+|.+|+|.+...|..+...+.|+++..+.++.||+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            458999999999999999 544 455 57777788999998888899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088        138 SQCGRQNGRN-----YLIFNTLAAKCLPTVF  163 (166)
Q Consensus       138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~  163 (166)
                      +.+.++++++     ++++..++...++..+
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~  116 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELF  116 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHcCCeEEEEECHHHHHHHHHhC
Confidence            9888888877     3455555655544433

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.50  E-value=1.6e-14  Score=111.32  Aligned_cols=88  Identities=32%  Similarity=0.381  Sum_probs=74.5

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc-c-ccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT-V-LDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY  135 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~-~-~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~y  135 (166)
                      .+.+++|+||||||||||+ ++.+ + | ..+..+.+++|.|..++.++.+|.|.+...|..+..++.++++..+.+|.|
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            3458999999999999999 5544 4 4 355567889999888888889999999999999999999999999999999


Q ss_pred             CCChHHHHHHHh
Q psy18088        136 GTSQCGRQNGRN  147 (166)
Q Consensus       136 G~~~~~I~~ile  147 (166)
                      |.+.+.++++++
T Consensus        84 g~~~~~i~~~l~   95 (207)
T 2j41_A           84 GTPVQYVKDTMD   95 (207)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            998888887765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.50  E-value=2.3e-14  Score=112.28  Aligned_cols=105  Identities=31%  Similarity=0.495  Sum_probs=79.5

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehh--hh
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAA--NL  134 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~g--n~  134 (166)
                      .|++++|+||||||||||+ ++.+ .+. +...+.+++|+|+.++..+++|.|.+...|..+...+.+++|.++.+  +.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence            3448999999999999999 5554 443 33456788998888888899999999999999888889999998888  67


Q ss_pred             cCCChHHHHHHHhh-----ccCChhHHhhCCccCC
Q psy18088        135 YGTSQCGRQNGRNY-----LIFNTLAAKCLPTVFP  164 (166)
Q Consensus       135 yG~~~~~I~~ile~-----v~L~~~~~~~l~~~~p  164 (166)
                      ||.+.+++++.++.     ++++..+++.+++.+|
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  132 (207)
T 1znw_A           98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP  132 (207)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT
T ss_pred             cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC
Confidence            89887776665542     2355555555544444

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.31  E-value=8.8e-13  Score=114.16  Aligned_cols=91  Identities=11%  Similarity=0.021  Sum_probs=65.1

Q ss_pred             CceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcc
Q psy18088         29 GITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKA  106 (166)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~  106 (166)
                      .++..+.++||+|.+..  +         .++++|+|+||||   +||.  |+..+|+.|..    |||+||+||++|++
T Consensus       212 ~~~~~~~~~YE~V~~~~--~---------~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~  273 (391)
T 3tsz_A          212 QPVQTKFPAYERVVLRE--A---------GFLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRS  273 (391)
T ss_dssp             -----CCCSEEEEEEEE--C---------SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC-
T ss_pred             ccccccCCCcceEECcC--C---------CCCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCcc
Confidence            34556678899998751  2         2467999999998   8999  99999987764    78999999999999


Q ss_pred             eeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        107 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       107 y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      |+|+                           +.++|+++++     +|+++.++++.|+..++
T Consensus       274 Y~Fv---------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~  309 (391)
T 3tsz_A          274 SGII---------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQW  309 (391)
T ss_dssp             -CCC---------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTC
T ss_pred             CCcC---------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCC
Confidence            9998                           5566666666     56667777777654433

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.29  E-value=5.5e-13  Score=118.05  Aligned_cols=93  Identities=12%  Similarity=0.002  Sum_probs=59.7

Q ss_pred             hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCC
Q psy18088         27 NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDG  104 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G  104 (166)
                      ++.++..+.++||+|.+.  .+         .++++|+|+||||+|   |.  |+..+|+.|..   +||| ||+||++|
T Consensus       202 ~~~~~~~~~~~YEeV~~~--~~---------~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG  263 (468)
T 3shw_A          202 SAQPVQTKFPAYERVVLR--EA---------GFLRPVTIFGPIADV---AREKLAREEPDIYQI---AKSE-PRDAGTDQ  263 (468)
T ss_dssp             -----CCCCCSEEEEEEE--CC---------SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE---CCCB-C-------
T ss_pred             ccccccccCCCcceeEcc--cC---------CCCCEEEEECCCHHH---HHHHHHHhCCCceee---ecCC-CCCccccc
Confidence            344556667899999875  22         356799999999999   77  99999988876   4699 99999999


Q ss_pred             cceeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        105 KAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       105 ~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      ++|+|                           |++++|+++++     +|+++.++++.|+...+
T Consensus       264 ~~Y~F---------------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~  301 (468)
T 3shw_A          264 RSSGI---------------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQW  301 (468)
T ss_dssp             ---CB---------------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTC
T ss_pred             ccCCc---------------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCC
Confidence            99998                           67777777777     56777888777754433

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.19  E-value=1.4e-12  Score=112.03  Aligned_cols=107  Identities=16%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.|++||     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~   66 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGE-----ILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSGK   66 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            577889998885 667889999999888     8999999999999999 8888654            666653  555


Q ss_pred             cee----ecCH--HHHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088        106 AYH----FVTR--ADMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~----fvs~--~~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~  153 (166)
                      +..    ....  ..+...+|...+.++.++.+| .||.     +.    +.++++++.++|.+
T Consensus        67 ~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~  130 (359)
T 3fvq_A           67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE  130 (359)
T ss_dssp             EEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG
T ss_pred             ECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch
Confidence            431    1111  112233455667778888887 4543     22    34667777777764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.17  E-value=1.2e-11  Score=106.51  Aligned_cols=108  Identities=14%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             CceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088         29 GITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~  102 (166)
                      .+++++++++.+.     ..++.++|+.|++|+     +++|+||||||||||+ ++.++..            |..|++
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge-----i~~IiGpnGaGKSTLlr~i~GL~~------------p~~G~I   85 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ-----IYGVIGASGAGKSTLIRCVNLLER------------PTEGSV   85 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEE
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC-----EEEEEcCCCchHHHHHHHHhcCCC------------CCceEE
Confidence            3788999998884     457889999999888     8999999999999999 8888765            778874


Q ss_pred             --CCcceeecCHHHHHH-------HHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCCh
Q psy18088        103 --DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       103 --~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~  153 (166)
                        +|.+....+..+...       .+|...++++.++.+|      .+|.+.+    .++++++.++|.+
T Consensus        86 ~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~  155 (366)
T 3tui_C           86 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD  155 (366)
T ss_dssp             EETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             EECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence              888765556554432       2455566777777777      2455543    3566677777764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.17  E-value=1e-11  Score=102.12  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=74.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      ++++++++|.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.++-.            |..|++  +|.
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~   73 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASGE-----MVAIIGPNGAGKSTLLRLLTGYLS------------PSHGECHLLGQ   73 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECCTTSCHHHHHHHHTSSSC------------CSSCEEEETTE
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            678889998885 567888999999888     8999999999999999 8877654            778874  777


Q ss_pred             ceeecCHHHHHHH----HHcCCccceeeehhh-hcCC-----C--hHHHHHHHhhccCCh
Q psy18088        106 AYHFVTRADMEER----IAAGEFLEHAEFAAN-LYGT-----S--QCGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~f~~~----~~~~~fle~~~~~gn-~yG~-----~--~~~I~~ile~v~L~~  153 (166)
                      +....+..++.+.    .|...+....++.+| .+|.     .  .+.++++++.+++.+
T Consensus        74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~  133 (266)
T 4g1u_C           74 NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA  133 (266)
T ss_dssp             ETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred             ECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence            6544444444332    233444455666666 2331     1  345677777777754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.15  E-value=1.3e-12  Score=113.08  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .++++++++.+. ..++.++|+.|++||     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~   65 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGE-----FVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEK   65 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCC-----EEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECCE
Confidence            467788888885 667889999999888     8999999999999999 8888665            666763  665


Q ss_pred             ceeecCHHH--HHHHHHcCCccceeeehhh-h-----cCCChH----HHHHHHhhccCCh
Q psy18088        106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-L-----YGTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~-----yG~~~~----~I~~ile~v~L~~  153 (166)
                      +....+..+  +...+|...+.++.++.+| .     +|.+.+    .++++++.++|.+
T Consensus        66 ~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (381)
T 3rlf_A           66 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH  125 (381)
T ss_dssp             ECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred             ECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            543333221  2223455667777788777 2     345543    4566777777764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.13  E-value=1.1e-11  Score=104.27  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      .+++++|++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.++..            |..|+  ++|
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~G  115 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQ-----TLALVGPSGAGKSTILRLLFRFYD------------ISSGCIRIDG  115 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTC-----EEEEESSSCHHHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCC-----EEEEECCCCchHHHHHHHHHcCCC------------CCCcEEEECC
Confidence            477888888773  557888999998888     8999999999999999 8888765            88887  488


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      .+...++...+.+.   +.|..++...++.+| .||..   .+.++++++.+.+.
T Consensus       116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~  170 (306)
T 3nh6_A          116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH  170 (306)
T ss_dssp             EETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred             EEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence            87665666655542   233445556788888 56653   45677777766654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.10  E-value=2.6e-11  Score=118.16  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      -.++++|++.+.    .+++.++|+.|++|+     .++|+||||||||||+ |+.++.+            |.+|+  +
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge-----~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~i 1138 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQ-----TLALVGPSGCGKSTVVALLERFYD------------TLGGEIFI 1138 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTC-----EEEEECSTTSSTTSHHHHHTTSSC------------CSSSEEEE
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCC-----EEEEECCCCChHHHHHHHHhcCcc------------CCCCEEEE
Confidence            577888887762    357889999999888     8999999999999999 8888877            88997  5


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC-----ChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT-----SQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~-----~~~~I~~ile~v~L~  152 (166)
                      ||+|..-++...++..   +.|+.++..+++.+| .||.     +.+++.++++.+.+.
T Consensus      1139 DG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~ 1197 (1321)
T 4f4c_A         1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH 1197 (1321)
T ss_dssp             TTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCH
T ss_pred             CCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCCh
Confidence            9999877888877764   577889999999999 6885     346777777766654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.10  E-value=6.4e-12  Score=108.23  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~   73 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGE-----FLVLLGPSGCGKTTTLRMIAGLEE------------PTEGRIYFGDR   73 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcCCC------------CCceEEEECCE
Confidence            477888888884 457788899998888     8999999999999999 8888654            556653  554


Q ss_pred             ceeecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCChh
Q psy18088        106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~~  154 (166)
                      +....+..  .+...+|...+.++.++.+| .||     .+.    +.++++++.++|.+.
T Consensus        74 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~  134 (372)
T 1v43_A           74 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL  134 (372)
T ss_dssp             ECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred             ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH
Confidence            43211111  11112344445666677777 344     333    246677777877643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.10  E-value=4.7e-12  Score=108.60  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ +|.++..            |..|++  +|.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~   65 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGE-----FVALLGPSGCGKTTTLLMLAGIYK------------PTSGEIYFDDV   65 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCC-----EEEEEcCCCchHHHHHHHHHCCCC------------CCccEEEECCE
Confidence            467778888774 457788899999888     8999999999999999 8888654            666653  565


Q ss_pred             ceeecCHH--HHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088        106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~  153 (166)
                      +....+..  .+...+|...+.++.++.+| .||.     +.    +.++++++.++|.+
T Consensus        66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (359)
T 2yyz_A           66 LVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN  125 (359)
T ss_dssp             ECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred             ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            43222211  12223455556677777777 3442     22    35677888888764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.10  E-value=3.5e-11  Score=96.22  Aligned_cols=107  Identities=13%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.++..            |..|++  +|.
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   66 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGE-----FVSIIGASGSGKSTLLYILGLLDA------------PTEGKVFLEGK   66 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEEECTTSCHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCE
Confidence            467778887774 457788999999888     8999999999999999 7777654            777764  776


Q ss_pred             ceeecCHHHH---H-H----HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088        106 AYHFVTRADM---E-E----RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~~f---~-~----~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~  153 (166)
                      +....+..+.   . .    ..|...+.++.++.+|.      ++.+.    +.++++++.++|.+
T Consensus        67 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  132 (224)
T 2pcj_A           67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD  132 (224)
T ss_dssp             ECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred             ECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            6543343222   1 1    13444555666666661      34332    34566677777653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.09  E-value=4.8e-11  Score=96.14  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      ++++++++.+.     ..++.++|+.+.+|+     +++|+||||||||||+ ++.++-.            |..|++  
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~   64 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGE-----FVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVYI   64 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEE
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEE
Confidence            45677887774     357888999999888     8999999999999999 8887664            778874  


Q ss_pred             CCcceeecCHHHHHH--------HHHcCCccceeeehhhh-c--------CCCh----HHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEE--------RIAAGEFLEHAEFAANL-Y--------GTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~--------~~~~~~fle~~~~~gn~-y--------G~~~----~~I~~ile~v~L~~  153 (166)
                      +|.+....+..+...        ++|...+.++.++.+|. +        +.+.    +.+.++++.+++.+
T Consensus        65 ~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  136 (235)
T 3tif_A           65 DNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE  136 (235)
T ss_dssp             TTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG
T ss_pred             CCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh
Confidence            777654445443321        24555666666777762 2        2333    23455666777654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.07  E-value=4e-11  Score=97.74  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.+.-.            |..|++  +|.
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~   69 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGD-----VTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENK   69 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCE
Confidence            577888888874 457889999999888     8999999999999999 7777654            667763  665


Q ss_pred             ce
Q psy18088        106 AY  107 (166)
Q Consensus       106 ~y  107 (166)
                      +.
T Consensus        70 ~~   71 (257)
T 1g6h_A           70 DI   71 (257)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.06  E-value=1.1e-10  Score=104.95  Aligned_cols=107  Identities=14%  Similarity=0.118  Sum_probs=77.2

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      +..+++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.++..            |.+|++  
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~  402 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGK-----TVALVGRSGSGKSTIANLFTRFYD------------VDSGSICL  402 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEE
Confidence            4678889988874   458899999999888     8999999999999999 8887765            888874  


Q ss_pred             CCcceeecCHHHHHH----HHHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~  153 (166)
                      +|++....+..++.+    ..|. ..+...++.+| .+|.    +.+.++++++.+++.+
T Consensus       403 ~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~  461 (582)
T 3b5x_A          403 DGHDVRDYKLTNLRRHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAME  461 (582)
T ss_pred             CCEEhhhCCHHHHhcCeEEEcCC-CccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHH
Confidence            887754444444433    2333 33444688888 4553    3466777887777654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.05  E-value=5.5e-12  Score=108.06  Aligned_cols=107  Identities=13%  Similarity=0.138  Sum_probs=71.4

Q ss_pred             ceEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      +++++++++.+ . ..++.++|+.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|
T Consensus        14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g   76 (355)
T 1z47_A           14 TIEFVGVEKIYPGGARSVRGVSFQIREGE-----MVGLLGPSGSGKTTILRLIAGLER------------PTKGDVWIGG   76 (355)
T ss_dssp             EEEEEEEEECCTTSTTCEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred             eEEEEEEEEEEcCCCEEEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECC
Confidence            67788888887 4 457788899999888     8999999999999999 8887654            666653  55


Q ss_pred             cceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCCh
Q psy18088        105 KAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~  153 (166)
                      .+....+..  .+...+|...+.++.++.+| .|     +.+.    +.++++++.++|.+
T Consensus        77 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~  137 (355)
T 1z47_A           77 KRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES  137 (355)
T ss_dssp             EECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred             EECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            443211111  11223344556667777777 23     4443    34566777787764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.05  E-value=7.4e-12  Score=107.02  Aligned_cols=107  Identities=15%  Similarity=0.078  Sum_probs=70.3

Q ss_pred             ceEEeeecceee-ec--CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC-IS--ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~--~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      +++++++++.+. ..  ++.++|+.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~   65 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGE-----RFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFD   65 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTC-----EEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEET
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEEC
Confidence            467778888774 34  7788899999888     8999999999999999 8887654            555653  5


Q ss_pred             Ccceee-----cCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088        104 GKAYHF-----VTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~f-----vs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~  153 (166)
                      |.+...     ....  .+...+|...+.++.++.+| .||     .+.    +.++++++.++|.+
T Consensus        66 g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  132 (353)
T 1oxx_K           66 DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH  132 (353)
T ss_dssp             TEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG
T ss_pred             CEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            544321     1111  11223344556666777777 343     333    34667777787764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.04  E-value=7e-11  Score=96.27  Aligned_cols=104  Identities=10%  Similarity=0.013  Sum_probs=69.5

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      +++++++++.   .++.++++.+++|+     +++|+||||||||||+ ++.+.-.            |. |++  +|.+
T Consensus         4 ~l~~~~l~~~---~vl~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~l~Gl~~------------p~-G~i~~~g~~   62 (249)
T 2qi9_C            4 VMQLQDVAES---TRLGPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMTS------------GK-GSIQFAGQP   62 (249)
T ss_dssp             EEEEEEEEET---TTEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CE-EEEEETTEE
T ss_pred             EEEEEceEEE---EEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CC-eEEEECCEE
Confidence            4667787776   57778899998888     8999999999999999 7777654            66 763  6655


Q ss_pred             eeecCHHHHHH----HHHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCChh
Q psy18088        107 YHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       107 y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~~  154 (166)
                      ....+..++.+    +.|...+.+..++.+| .++.    +.+.++++++.++|.+.
T Consensus        63 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~  119 (249)
T 2qi9_C           63 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK  119 (249)
T ss_dssp             GGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG
T ss_pred             CCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH
Confidence            32223333332    2344445555567666 2332    35567888888887643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.04  E-value=5.7e-12  Score=108.19  Aligned_cols=107  Identities=13%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~   65 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGE-----FMALLGPSGSGKSTLLYTIAGIYK------------PTSGKIYFDEK   65 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCceEEEECCE
Confidence            466778887774 456778899998888     8999999999999999 8888654            666653  565


Q ss_pred             ceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCChH----HHHHHHhhccCCh
Q psy18088        106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~~----~I~~ile~v~L~~  153 (166)
                      +....+..  .+...+|...+.++.++.+| .|     +.+.+    .++++++.++|.+
T Consensus        66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (362)
T 2it1_A           66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK  125 (362)
T ss_dssp             ECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred             ECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence            43222211  12223455556667777777 33     34433    4566777777753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.04  E-value=5.4e-12  Score=107.81  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      ++++++++.+...++.++|+.+++|+     +++|+||||||||||+ +|.++..            |..|++  +|.+.
T Consensus         2 l~~~~l~~~y~~~~l~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i   64 (348)
T 3d31_A            2 IEIESLSRKWKNFSLDNLSLKVESGE-----YFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKDV   64 (348)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECTTC-----EEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEEC
T ss_pred             EEEEEEEEEECCEEEeeeEEEEcCCC-----EEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECCEEC
Confidence            45667777764227778899998888     8999999999999999 8888765            777764  66653


Q ss_pred             eecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh-HHHHHHHhhccCCh
Q psy18088        108 HFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ-CGRQNGRNYLIFNT  153 (166)
Q Consensus       108 ~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~-~~I~~ile~v~L~~  153 (166)
                      ...+..  .+...+|...+.++.++.+| .||     .+. +.++++++.++|.+
T Consensus        65 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~  119 (348)
T 3d31_A           65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH  119 (348)
T ss_dssp             TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT
T ss_pred             CCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch
Confidence            222211  11123455566677777777 333     332 46777888888764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.04  E-value=7.6e-12  Score=107.69  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ +|.++..            |.+|++  +|.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~   65 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGE-----FMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDK   65 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCcHHHHHHHHHHcCCC------------CCccEEEECCE
Confidence            366778888774 457788899999888     8999999999999999 8887654            556653  555


Q ss_pred             ceee------cCHH--HHHHHHHcCCccceeeehhh-hc-----CCChH----HHHHHHhhccCCh
Q psy18088        106 AYHF------VTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~f------vs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~~----~I~~ile~v~L~~  153 (166)
                      +...      .+..  .+...+|...+.++.++.+| .|     +.+.+    .++++++.++|.+
T Consensus        66 ~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  131 (372)
T 1g29_1           66 LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE  131 (372)
T ss_dssp             EEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred             ECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence            4322      2211  12223444556667777777 23     44433    4566777777754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.02  E-value=3.2e-11  Score=97.44  Aligned_cols=104  Identities=12%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      ++++++++.+ . ..++.++|+.+++|+     +++|+||||||||||+ ++.++..            |.+|++  +|.
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   64 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNS-----IIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDGQ   64 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTE-----EEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETTE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            4566777766 3 457788889998888     8999999999999999 7777654            666663  554


Q ss_pred             ceeecCHH----HHHHHHHcCCccceeeehhh-hcC----CChHHHHHHHhhccCC
Q psy18088        106 AYHFVTRA----DMEERIAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFN  152 (166)
Q Consensus       106 ~y~fvs~~----~f~~~~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~  152 (166)
                      +....+..    .+..+.|...+.+ .++.+| .++    ...+.++++++.+++.
T Consensus        65 ~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~  119 (243)
T 1mv5_A           65 PIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFAR  119 (243)
T ss_dssp             ESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCT
T ss_pred             EhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChH
Confidence            42111111    1122233334444 477777 344    2345577777776665

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.02  E-value=1e-10  Score=94.93  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             ceEEeeeccee--e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRT--C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ..++++|++.+  . ..++.++|+.+++|+     +++|+||||||||||+ ++.++..            |..|++  +
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~i~   69 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLID   69 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEEC
Confidence            35677888777  2 457788899999888     8999999999999999 8877654            777764  7


Q ss_pred             CcceeecCHHHHHHH----HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEER----IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~----~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      |.+....+...+.+.    .|...++. .++.+| .++.   +.+.++++++.+++.+
T Consensus        70 g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~  126 (247)
T 2ff7_A           70 GHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHD  126 (247)
T ss_dssp             TEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHH
T ss_pred             CEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence            765432333333332    34444444 477777 3442   3455667777777654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.02  E-value=1.2e-11  Score=98.86  Aligned_cols=109  Identities=15%  Similarity=0.069  Sum_probs=66.7

Q ss_pred             hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         27 NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      +..+++++++++.+...++.++|+.+++|+     +++|+||||||||||+ ++.+...            |..|++  +
T Consensus         7 ~~~~l~~~~ls~~y~~~il~~vsl~i~~Ge-----~~~iiG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~   69 (214)
T 1sgw_A            7 HGSKLEIRDLSVGYDKPVLERITMTIEKGN-----VVNFHGPNGIGKTTLLKTISTYLK------------PLKGEIIYN   69 (214)
T ss_dssp             --CEEEEEEEEEESSSEEEEEEEEEEETTC-----CEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred             CCceEEEEEEEEEeCCeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEEC
Confidence            345788888887763267788899999888     7999999999999999 7777553            556653  5


Q ss_pred             CcceeecCHHHHHHHHHcCCccceeeehhh------hcC--CChHHHHHHHhhccCCh
Q psy18088        104 GKAYHFVTRADMEERIAAGEFLEHAEFAAN------LYG--TSQCGRQNGRNYLIFNT  153 (166)
Q Consensus       104 G~~y~fvs~~~f~~~~~~~~fle~~~~~gn------~yG--~~~~~I~~ile~v~L~~  153 (166)
                      |.+.. --...+..+.|...+.+..++.+|      .++  ...+.++++++.++++.
T Consensus        70 g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~  126 (214)
T 1sgw_A           70 GVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD  126 (214)
T ss_dssp             TEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC
T ss_pred             CEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc
Confidence            54421 000001111233333344455444      122  12356777888887764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.00  E-value=3.8e-11  Score=98.32  Aligned_cols=108  Identities=16%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.++..            |..|++  +|.
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~   68 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGD-----VISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQ   68 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            677888888874 457888999999888     8999999999999999 7777654            777764  676


Q ss_pred             ceee----------cCHH---HHHH----HHHcCCccceeeehhh-hc------CCCh----HHHHHHHhhccCChh
Q psy18088        106 AYHF----------VTRA---DMEE----RIAAGEFLEHAEFAAN-LY------GTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       106 ~y~f----------vs~~---~f~~----~~~~~~fle~~~~~gn-~y------G~~~----~~I~~ile~v~L~~~  154 (166)
                      +...          .+..   .+.+    ++|...+.++.++.+| .+      +.+.    +.++++++.++|.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~  145 (262)
T 1b0u_A           69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER  145 (262)
T ss_dssp             ECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred             EccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch
Confidence            5421          2222   1222    2344455555566665 22      3342    345667778888754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.00  E-value=8.2e-11  Score=96.21  Aligned_cols=109  Identities=17%  Similarity=0.083  Sum_probs=70.8

Q ss_pred             cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      -++++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.+.-.            |.+|++  +
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----i~~l~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~   75 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEEGE-----IFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVF   75 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEEC
Confidence            35788889998884 557788899999888     8999999999999999 7777654            666763  6


Q ss_pred             CcceeecCHHHHHH----HHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088        104 GKAYHFVTRADMEE----RIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL  154 (166)
Q Consensus       104 G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~  154 (166)
                      |.+... ....+.+    +.|...+.+..++.+|      .++.+.    +.++++++.++|.+.
T Consensus        76 g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~  139 (256)
T 1vpl_A           76 GKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK  139 (256)
T ss_dssp             TEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG
T ss_pred             CEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH
Confidence            654211 1111211    2333445555566665      134443    345667777777643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.00  E-value=1.3e-10  Score=95.40  Aligned_cols=107  Identities=16%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.++-.            |..|++  +|.
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Ge-----i~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~   86 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGE-----VVVVIGPSGSGKSTFLRCLNLLED------------FDEGEIIIDGI   86 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCE
Confidence            688889998874 457888999999888     8999999999999999 7777654            667764  666


Q ss_pred             cee--ecCHHHHHH----HHHcCCccceeeehhh-hc------CCCh----HHHHHHHhhccCCh
Q psy18088        106 AYH--FVTRADMEE----RIAAGEFLEHAEFAAN-LY------GTSQ----CGRQNGRNYLIFNT  153 (166)
Q Consensus       106 ~y~--fvs~~~f~~----~~~~~~fle~~~~~gn-~y------G~~~----~~I~~ile~v~L~~  153 (166)
                      +..  ......+.+    +.|...+.++.++.+| .+      +.+.    +.++++++.++|.+
T Consensus        87 ~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~  151 (263)
T 2olj_A           87 NLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD  151 (263)
T ss_dssp             ESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG
T ss_pred             ECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence            542  011122222    2344455555566665 22      3342    34566777777754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.00  E-value=1.3e-10  Score=104.35  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=76.8

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      +..+++++++.+.   ..++.++++.+++|+     .++|+||||||||||+ ++.++..            |.+|++  
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~-----~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~  402 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGK-----TVALVGRSGSGKSTIASLITRFYD------------IDEGHILM  402 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTC-----EEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEE
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhccC------------CCCCeEEE
Confidence            4577888887774   457888899998888     8999999999999999 8887665            778874  


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~  153 (166)
                      +|++..-.+..++.+.   +.|...+..+++.+| .+|.    +.+.++++++.+++.+
T Consensus       403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~  461 (582)
T 3b60_A          403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD  461 (582)
T ss_dssp             TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHH
T ss_pred             CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHH
Confidence            8877544455555442   223333444688888 4553    4566788888777654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.99  E-value=2.3e-10  Score=103.25  Aligned_cols=106  Identities=15%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      -.+++++++.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.++..            |.+|++  +|
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g  416 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQ-----KVALVGPTGSGKTTIVNLLMRFYD------------VDRGQILVDG  416 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTC-----EEEEECCTTSSTTHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCcC------------CCCeEEEECC
Confidence            467888887774  457889999999888     8999999999999999 8887765            888874  88


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN  152 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~  152 (166)
                      ++....+..++.+.   +.|...+..+++.+| .+|.   +.+++.++++.+.+.
T Consensus       417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  471 (598)
T 3qf4_B          417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSD  471 (598)
T ss_dssp             EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH
T ss_pred             EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCH
Confidence            88766666666553   233445556788888 4664   345677776655543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.98  E-value=2e-10  Score=111.99  Aligned_cols=106  Identities=11%  Similarity=0.104  Sum_probs=84.8

Q ss_pred             ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      -.++++|++.+.    ..++.++|+.+++|+     .++|+||||||||||+ |+.++.+            |.+|+  +
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~-----~vaivG~sGsGKSTll~ll~~~~~------------~~~G~I~i  477 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQ-----TVALVGSSGCGKSTIISLLLRYYD------------VLKGKITI  477 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTC-----EEEEEECSSSCHHHHHHHHTTSSC------------CSEEEEEE
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCc-----EEEEEecCCCcHHHHHHHhccccc------------cccCcccC
Confidence            467888887662    467888899998888     8999999999999999 8887776            88887  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      +|++..-++...++..   +.|..++..+++.+| .||.+   .+++.++++...++
T Consensus       478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~  534 (1321)
T 4f4c_A          478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE  534 (1321)
T ss_dssp             TTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred             CCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence            8988777788877764   577889999999999 68864   46677777665544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.96  E-value=2.9e-10  Score=93.48  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=62.8

Q ss_pred             CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088         29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-  102 (166)
                      +++++++|++.+.    ..++.++++.+++|+     +++|+||||||||||+ +|.++..            |..|++ 
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLlk~l~Gl~~------------p~~G~I~   77 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK-----VTALVGPNGSGKSTVAALLQNLYQ------------PTGGKVL   77 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEE
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEE
Confidence            4688889988774    457888899998888     8999999999999999 8877654            777874 


Q ss_pred             -CCcceeecCHHHHHH----HHHcCCccceeeehhh-hcC
Q psy18088        103 -DGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYG  136 (166)
Q Consensus       103 -~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG  136 (166)
                       +|.+....+...+.+    +.|...++. .++.+| .+|
T Consensus        78 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~  116 (271)
T 2ixe_A           78 LDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYG  116 (271)
T ss_dssp             ETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTT
T ss_pred             ECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhh
Confidence             776643333333332    134444444 477777 344

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.96  E-value=4.1e-10  Score=101.50  Aligned_cols=106  Identities=13%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ..+++++++.+.   ..++.++|+.+++||     +++|+||||||||||+ ++.++..            |.+|++  +
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge-----~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~i~  403 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGS-----LVAVLGETGSGKSTLMNLIPRLID------------PERGRVEVD  403 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTC-----EEEEECSSSSSHHHHHHTTTTSSC------------CSEEEEEES
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcc------------CCCcEEEEC
Confidence            467788887762   457888899998888     8999999999999999 8888765            888874  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      |++....+..++.+.   +.|+.++..+++.+| .+|.+   .+++.++++...+.
T Consensus       404 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  459 (587)
T 3qf4_A          404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIH  459 (587)
T ss_dssp             SSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCH
T ss_pred             CEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcH
Confidence            888766676666553   234455556789998 46643   34566666555443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.95  E-value=3e-10  Score=102.00  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D  103 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~  103 (166)
                      ..+++++++.+.   ..++.+.|+.+++|+     +++|+||||||||||+ ++.++..            |.+|++  +
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~  401 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGE-----TVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILID  401 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEET
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCC-----EEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEEC
Confidence            467788887763   457888899998888     8999999999999999 8888765            888874  8


Q ss_pred             CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088        104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN  152 (166)
Q Consensus       104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~  152 (166)
                      |++....+..++.+.   +.|...+..+++.+| .+|.+   .+++.++++.+.+.
T Consensus       402 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  457 (578)
T 4a82_A          402 GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH  457 (578)
T ss_dssp             TEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH
T ss_pred             CEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence            887665666655542   233445556688888 56653   34566666655543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.94  E-value=1.1e-10  Score=94.19  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=59.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.++-.            |..|++  +|.
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   68 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQ-----IVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQ   68 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence            567778887774 457788899999888     8999999999999999 7777654            667763  666


Q ss_pred             ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn  133 (166)
                      +....+..+..+     +.|...+.++.++.+|
T Consensus        69 ~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en  101 (240)
T 1ji0_A           69 DITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             ECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence            543223222211     2344445555566666

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.94  E-value=1.5e-10  Score=95.79  Aligned_cols=50  Identities=14%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+. ..++.++++.+++|+     +++|+||||||||||+ ++.++-.
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge-----~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGD-----KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC
Confidence            577888888874 457888999999888     8999999999999999 7777553

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.93  E-value=1.4e-10  Score=95.84  Aligned_cols=61  Identities=23%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      +++++++++.+.  ..++.++|+.+++|+     +++|+||||||||||+ ++.++-.            |..|++  +|
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge-----~~~iiGpnGsGKSTLl~~l~Gl~~------------p~~G~I~~~G   69 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGE-----VTAILGGNGVGKSTLFQNFNGILK------------PSSGRILFDN   69 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTS-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC------------CCCeEEEECC
Confidence            578889998884  347889999999888     8999999999999999 7777654            777764  77


Q ss_pred             cce
Q psy18088        105 KAY  107 (166)
Q Consensus       105 ~~y  107 (166)
                      .+.
T Consensus        70 ~~i   72 (275)
T 3gfo_A           70 KPI   72 (275)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            664

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.92  E-value=6.1e-11  Score=96.08  Aligned_cols=47  Identities=15%  Similarity=0.127  Sum_probs=36.9

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++++++++.+.. .+.++|+.+++ +     +++|+||||||||||+ ++.++-.
T Consensus         2 l~~~~l~~~y~~-~l~~isl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A            2 FLKVRAEKRLGN-FRLNVDFEMGR-D-----YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             CEEEEEEEEETT-EEEEEEEEECS-S-----EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEEEEEeCC-EEeeeEEEECC-E-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            456677776642 36788888888 8     8999999999999999 7777543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.92  E-value=2.9e-10  Score=98.48  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=72.6

Q ss_pred             CceEEeeeccee--e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRT--C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      +.+++++|++.+  . ..++.++|+.|++||     +++|+||||||||||+ +|.++..             .+|+  +
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~-------------~~G~I~i   79 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQ-----RVGLLGRTGSGKSTLLSAFLRLLN-------------TEGEIQI   79 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHHTCSE-------------EEEEEEE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCC-----EEEEECCCCChHHHHHHHHhCCCC-------------CCeEEEE
Confidence            457888999888  3 567889999999888     8999999999999999 7777542             2244  3


Q ss_pred             CCcceeecCHHHHHH----HHHcCCccceeeehhhh--cC-CChHHHHHHHhhccCChh
Q psy18088        103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFNTL  154 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~~~  154 (166)
                      +|++..-.+...+.+    .+|...++. .++.+|.  ++ ...+.++++++.++|.+.
T Consensus        80 ~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~  137 (390)
T 3gd7_A           80 DGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSV  137 (390)
T ss_dssp             SSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHH
T ss_pred             CCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHH
Confidence            555543334443333    233333443 5777773  22 345678888888887643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.89  E-value=1.8e-10  Score=93.53  Aligned_cols=48  Identities=10%  Similarity=-0.156  Sum_probs=40.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGE-----VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence            466778887774 457788899999888     8999999999999999 77775

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.88  E-value=7.1e-10  Score=90.61  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      .+++++++++.+.    ..++.++++.+++|+     +++|+||||||||||+ ++.++..            | .|+  
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------~-~G~I~   77 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGT-----TCALVGHTGSGKSTIAKLLYRFYD------------A-EGDIK   77 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------C-EEEEE
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhccCC------------C-CeEEE
Confidence            4688889988774    247888899998888     8999999999999999 7777543            4 465  


Q ss_pred             cCCcceeecCHHHHHH----HHHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088        102 VDGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT  153 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~  153 (166)
                      ++|.+....+...+.+    +.|...++. .++.+| .+|.   ..+.+.++++.+++.+
T Consensus        78 i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~  136 (260)
T 2ghi_A           78 IGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYD  136 (260)
T ss_dssp             ETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred             ECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHH
Confidence            3665543223333222    223334443 577777 3443   3345666666666543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.88  E-value=6.2e-11  Score=103.34  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEF  124 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~f  124 (166)
                      ++|+|+||||||||||.  |...++..        +...++++||+|+.+|.+|++|||++..+|.+.+..+.|
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F   76 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF   76 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence            48999999999999999  66665532        222356789999999999999999876655443333333

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.87  E-value=4.4e-11  Score=101.37  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=45.3

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADME  116 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~  116 (166)
                      +++|+|+||||||||||.  |...++..        +...++++|++|+.+|.+|++|||++..++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~   69 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPS   69 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChh
Confidence            458999999999999999  66665531        2345678899999999999999998765543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.83  E-value=9.2e-11  Score=95.64  Aligned_cols=49  Identities=12%  Similarity=0.038  Sum_probs=40.3

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.  ..++.++|+.+++|+     +++|+||||||||||+ ++.+.-
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGD-----ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTC-----EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            467778887764  346778899998888     8999999999999999 777754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.81  E-value=6.7e-11  Score=100.05  Aligned_cols=58  Identities=14%  Similarity=0.089  Sum_probs=45.3

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHH
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADME  116 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~  116 (166)
                      ++++|+|+||||||||||.  |...++..        +...++++||+|+++|.+|++|||++..++.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~   76 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPS   76 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCcc
Confidence            4568999999999999999  66655531        2234567999999999999999998766543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.78  E-value=2.4e-09  Score=104.13  Aligned_cols=106  Identities=16%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      +-.++++|++.+.    ..++.++++.+++|+     .++|+||||||||||+ ++.++.+            |.+|+  
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~-----~~~ivG~sGsGKSTl~~ll~g~~~------------~~~G~i~  448 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ-----TVALVGNSGCGKSTTVQLMQRLYD------------PLDGMVS  448 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTC-----EEEEECCSSSSHHHHHHHTTTSSC------------CSEEEEE
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEE
Confidence            3567888887773    357888999999888     8999999999999999 8887765            88887  


Q ss_pred             cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccC
Q psy18088        102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIF  151 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L  151 (166)
                      ++|++...++...+...   +.|..++..+++.+| .+|.+   .+++.++++...+
T Consensus       449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~  505 (1284)
T 3g5u_A          449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANA  505 (1284)
T ss_dssp             ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTC
T ss_pred             ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCc
Confidence            48988777777776654   345556667789888 56643   4566666665544

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.74  E-value=1.3e-09  Score=89.43  Aligned_cols=48  Identities=10%  Similarity=-0.054  Sum_probs=41.4

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +++++++++.+. ..++.++|+.+++|+     +++|+||||||||||+ ++.++
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPGE-----VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence            678889988874 457888999999888     8999999999999999 77775

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.71  E-value=1.4e-09  Score=87.55  Aligned_cols=49  Identities=16%  Similarity=0.060  Sum_probs=40.7

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.++.
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGA-----LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            467778887774   457888899998888     8999999999999999 777654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.71  E-value=1.5e-09  Score=89.01  Aligned_cols=46  Identities=13%  Similarity=0.059  Sum_probs=37.2

Q ss_pred             eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++++++.+.     ..++.++++.++ |+     +++|+||||||||||+ ++.+.
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge-----~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GE-----KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SS-----EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CE-----EEEEECCCCCCHHHHHHHHhCC
Confidence            45667777664     457788899998 88     8999999999999999 76664

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.71  E-value=5.3e-09  Score=101.77  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=75.7

Q ss_pred             CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      +-.++++|++.+.    ..++.++|+.|++||     .++|+||||||||||+ ++.++.+            |..|+  
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge-----~v~ivG~sGsGKSTl~~~l~g~~~------------p~~G~I~ 1091 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ-----TLALVGSSGCGKSTVVQLLERFYD------------PMAGSVF 1091 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSS-----EEEEECSSSTTHHHHHHHHTTSSC------------CSEEEEE
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEE
Confidence            3467888887773    358899999999999     8999999999999999 8887765            77887  


Q ss_pred             cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC-----ChHHHHHHHhhccC
Q psy18088        102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT-----SQCGRQNGRNYLIF  151 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~-----~~~~I~~ile~v~L  151 (166)
                      ++|++....+...+...   +.|+.++..+++.+| .||.     +.+.+.++++...+
T Consensus      1092 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~ 1150 (1284)
T 3g5u_A         1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150 (1284)
T ss_dssp             SSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTC
T ss_pred             ECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCc
Confidence            48877655555544331   234445666788888 4553     34566666664443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.69  E-value=7.6e-10  Score=94.41  Aligned_cols=57  Identities=12%  Similarity=0.000  Sum_probs=44.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHH
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADM  115 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f  115 (166)
                      ++++|+|+||+|||||||.  |...++..        +...++++|++|+.+|.+|++||+++..++
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~  105 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDP  105 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCc
Confidence            3468999999999999999  66665421        223456789999999999999998875554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.69  E-value=2.9e-09  Score=87.09  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088         30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV  102 (166)
Q Consensus        30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~  102 (166)
                      +++++++++.+.      ..++.++|+.+++|+     +++|+||||||||||+ ++.++..            |..|++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~I   64 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGE-----CLLVAGNTGSGKSTLLQIVAGLIE------------PTSGDV   64 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCCcEE
Confidence            356677777764      357888899998888     8999999999999999 8777654            667764


Q ss_pred             --CCcceeecCHHHHHH----HHHcC-Cccceeeehhh-hcC----CC----hHHHHHHHhhccCC
Q psy18088        103 --DGKAYHFVTRADMEE----RIAAG-EFLEHAEFAAN-LYG----TS----QCGRQNGRNYLIFN  152 (166)
Q Consensus       103 --~G~~y~fvs~~~f~~----~~~~~-~fle~~~~~gn-~yG----~~----~~~I~~ile~v~L~  152 (166)
                        +|.+.   +...+.+    +.|.. .++...++.+| .++    .+    .+.++++++.++|.
T Consensus        65 ~~~g~~~---~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~  127 (266)
T 2yz2_A           65 LYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD  127 (266)
T ss_dssp             EETTEEC---CHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCC
T ss_pred             EECCEEC---chHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcC
Confidence              66542   1111111    11221 23334556565 232    12    24577788888886

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.68  E-value=2.7e-09  Score=85.41  Aligned_cols=50  Identities=18%  Similarity=0.054  Sum_probs=40.9

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++++++.+.   ..++.++++.+++|+     +++|+||||||||||+ ++.+.-.
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQ-----LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc
Confidence            567778887773   457888899998888     8999999999999999 7776543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.43  E-value=1.6e-08  Score=84.01  Aligned_cols=49  Identities=16%  Similarity=0.064  Sum_probs=31.9

Q ss_pred             CceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         29 GITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++++++++.. ..++.++++.+++|+     +++|+||||||||||+ ++.++.
T Consensus        39 ~~l~~~~l~~~~-~~vl~~isl~i~~Ge-----~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           39 DSLSFSNFSLLG-TPVLKDINFKIERGQ-----LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             -----------C-CCSEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             ceEEEEEEEEcC-ceEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence            356677777753 456778888998888     8999999999999999 777654

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.42  E-value=7.3e-08  Score=81.18  Aligned_cols=82  Identities=11%  Similarity=0.051  Sum_probs=59.0

Q ss_pred             eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCH
Q psy18088         35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTR  112 (166)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~  112 (166)
                      .++||+|....           .++.|+|+|+||   ||+||.  |+..+|++|+.+++. +|                 
T Consensus       131 ~~~YE~V~~~~-----------~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r-----------------  178 (308)
T 3kfv_A          131 YPPYERVVLRE-----------ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SR-----------------  178 (308)
T ss_dssp             CCSEEEEEEEE-----------CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC--------------------
T ss_pred             CcCchheeccc-----------cCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-cc-----------------
Confidence            46899998762           235679999999   599998  999999999999862 11                 


Q ss_pred             HHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        113 ADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       113 ~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      +     ++++.|+            ++++|+++++     +|+++.+|++.|+..+++
T Consensus       179 ~-----i~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~  219 (308)
T 3kfv_A          179 T-----DSPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYY  219 (308)
T ss_dssp             -----------CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCC
T ss_pred             c-----ccCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCC
Confidence            1     2344444            8888998888     678889998888654443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.40  E-value=5.3e-09  Score=88.62  Aligned_cols=55  Identities=11%  Similarity=0.044  Sum_probs=40.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceee--------eEEeecCCCCCCccCCcceeecCHH
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGF--------SVSHTTRGPRPGEVDGKAYHFVTRA  113 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~--------~v~~TTR~p~~ge~~G~~y~fvs~~  113 (166)
                      +.+.|+|+||+|||||||.  |...+...+..        ..+++|++|+.+|.+|++|||++..
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~   68 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIR   68 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCB
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeecc
Confidence            3458999999999999999  55444321111        2356899999999999998887643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.16  E-value=3.8e-07  Score=69.13  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=21.3

Q ss_pred             CCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +|+.+++|+     +++|+||||||||||+
T Consensus         2 vsl~i~~ge-----i~~l~G~nGsGKSTl~   26 (171)
T 4gp7_A            2 MKLTIPELS-----LVVLIGSSGSGKSTFA   26 (171)
T ss_dssp             EEEEEESSE-----EEEEECCTTSCHHHHH
T ss_pred             ccccCCCCE-----EEEEECCCCCCHHHHH
Confidence            355666666     8999999999999999

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.16  E-value=6.3e-07  Score=81.44  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ...+++.++.+.+|++..+.+++|+||||||||||+ ++.++-
T Consensus       360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence            446778899999999888999999999999999999 777654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.10  E-value=6e-08  Score=81.41  Aligned_cols=48  Identities=21%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++++|++.+...++.++++.|++|+     +++|+||||||||||+ ++.++.
T Consensus       102 i~~~~vs~~y~~~vL~~vsl~i~~Ge-----~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          102 FNYQNIELITFINALKLWLKGIPKKN-----CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTCTTCS-----EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcChhhhccceEEecCCC-----EEEEECCCCCcHHHHHHHHhhhc
Confidence            44555555543345667778888777     8999999999999999 666543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.09  E-value=1.7e-06  Score=78.56  Aligned_cols=45  Identities=18%  Similarity=-0.057  Sum_probs=32.0

Q ss_pred             eeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         34 ILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        34 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++.+..  .++.+++ .+++|+     +++|+||||||||||+ ++.+.-.
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge-----~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGM-----VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTS-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCC-----EEEEECCCCChHHHHHHHHhCCCC
Confidence            344554432  2455666 677777     8999999999999999 7777543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.08  E-value=1.1e-06  Score=78.49  Aligned_cols=45  Identities=16%  Similarity=-0.057  Sum_probs=33.9

Q ss_pred             eeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         34 ILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        34 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +++++.+..  .++.+++ .|++||     +++|+||||||||||+ ++.+.-.
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge-----~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGM-----VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTS-----EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             cCcEEEECCccccccCcC-cCCCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            366666642  2456676 777777     8999999999999999 7777543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.06  E-value=1e-06  Score=79.92  Aligned_cols=31  Identities=35%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             CCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .++.|++||     +++|+||||||||||+ ++.+.-
T Consensus       375 ~~~~v~~Ge-----i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          375 EPGEIRKGE-----VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CCEEEETTC-----EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cccccCCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            344455555     8999999999999999 777654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.06  E-value=9.7e-07  Score=70.34  Aligned_cols=35  Identities=11%  Similarity=-0.207  Sum_probs=21.3

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++.++++.+++++     +++|+||+|||||||+ ++.+
T Consensus        12 ~~~l~~isl~i~~g~-----iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           12 DLGTENLYFQSMRPF-----LIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -----------CCSE-----EEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeecceeccCCCCE-----EEEEECCCCCCHHHHHHHHHH
Confidence            356778888888777     8999999999999999 6655

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.05  E-value=1.8e-06  Score=73.49  Aligned_cols=51  Identities=16%  Similarity=0.087  Sum_probs=38.2

Q ss_pred             cEEEEEcCCCCChhhhc--ccccccc------ce--eeeEEeecCCCCCCccCCcceeecC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLD------RF--GFSVSHTTRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~------~f--~~~v~~TTR~p~~ge~~G~~y~fvs  111 (166)
                      ++|+|+||||||||||.  |...++.      .+  ....+++|++|+..|..|..|++++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d   68 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID   68 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHH
Confidence            58999999999999999  5555442      11  2344568999999998888877654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.05  E-value=1.1e-06  Score=78.63  Aligned_cols=48  Identities=23%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.+++++.+....+...++.|++||     +++|+||||||||||+ ++.+.-
T Consensus       288 l~~~~l~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          288 VTYPRLVKDYGSFRLEVEPGEIKKGE-----VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEECCEEEEETTEEEEECCEEEETTC-----EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEeeEEEEECCEEEEeCccccCCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence            44444444332112233455556666     8999999999999999 776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.04  E-value=1e-06  Score=66.90  Aligned_cols=33  Identities=12%  Similarity=-0.155  Sum_probs=26.1

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.++|+.+++|+     +++|+||+|||||||+ ++.+
T Consensus        22 ~l~~vsl~i~~Ge-----~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           22 AEILLKLHTEKAI-----MVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             HHHHHHHCCSSCE-----EEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhccccccCCCC-----EEEEECCCCCCHHHHHHHHHH
Confidence            3445667777777     8999999999999999 5554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.04  E-value=4.4e-07  Score=86.50  Aligned_cols=50  Identities=12%  Similarity=0.018  Sum_probs=40.0

Q ss_pred             ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.++++++.+.   ..++.++|+.+++|+     +++|+||||||||||+ ++.+...
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~Ge-----ivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSS-----RIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTC-----EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            567778887663   346778888988888     8999999999999999 7776543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.04  E-value=1.2e-06  Score=78.43  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=24.4

Q ss_pred             CCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         49 DSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        49 ~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      ++.|++||     +++|+||||||||||+ ++.+.-.
T Consensus       288 ~~~i~~Ge-----i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          288 NGEAKEGE-----IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             CEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cceECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence            44455555     8999999999999999 7777543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.01  E-value=1.7e-06  Score=69.70  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCChhhhc--ccccccccee--------eeEEeecCCCCCCccCCcceeecC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFG--------FSVSHTTRGPRPGEVDGKAYHFVT  111 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~--------~~v~~TTR~p~~ge~~G~~y~fvs  111 (166)
                      +++|+||+|||||||.  |...+...+-        ....++|++|+..|..|..|+|++
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~   62 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLD   62 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEe
Confidence            7999999999999999  4443321111        112356888887888887777665

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.00  E-value=8.3e-07  Score=70.16  Aligned_cols=23  Identities=17%  Similarity=-0.012  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.+++|+||||||||||+ ++.+.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            338999999999999999 77665

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.97  E-value=1.8e-06  Score=71.05  Aligned_cols=40  Identities=18%  Similarity=0.088  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEe-ecCCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSH-TTRGPRP   99 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~-TTR~p~~   99 (166)
                      .+.+|+|+||||||||||.  |...++. ....++. ++|.+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~   74 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHP   74 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhch
Confidence            3568999999999999999  6555542 2344444 5565544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.95  E-value=3.8e-06  Score=64.02  Aligned_cols=44  Identities=14%  Similarity=0.010  Sum_probs=26.0

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++++++++.+...++.+  +.+.++.     .++|+|++|||||||+ .+.+
T Consensus         4 l~~~~~~~~~~~~~l~~--~~~~~~~-----~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A            4 LNYQQTHFVMSAPDIRH--LPSDTGI-----EVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             -------CEEEESSGGG--SSCSCSE-----EEEEEECTTSSHHHHHTTTCC
T ss_pred             hhhhhhhheeecCCHhH--CCCCCCc-----EEEEECCCCCCHHHHHHHHhC
Confidence            45667777775444333  4555444     8999999999999999 4443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.93  E-value=4.3e-06  Score=75.95  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccC
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVD  103 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~  103 (166)
                      |.+++|+||||||||||+ ++.++-.            |..|++.
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll~------------P~~G~i~  135 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQK------------PNLGRFD  135 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC------------CCCceEe
Confidence            449999999999999999 7777654            7777763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.90  E-value=3.6e-06  Score=63.63  Aligned_cols=25  Identities=16%  Similarity=-0.000  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .+.+++|+||||||||||+ ++.+.+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            3458999999999999999 666555

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.85  E-value=2.4e-06  Score=75.85  Aligned_cols=36  Identities=11%  Similarity=-0.134  Sum_probs=28.7

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++.++++.+++ +     +++|+||||||||||+ ++.++.
T Consensus        17 ~~~l~~vsl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           17 WNGFFARTFDFDE-L-----VTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             ETTEEEEEEECCS-S-----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cccccceEEEEcc-c-----eEEEECCCCCcHHHHHHHHhcCC
Confidence            3455677778877 6     8999999999999999 777644

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.80  E-value=5.5e-06  Score=64.24  Aligned_cols=23  Identities=13%  Similarity=-0.090  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+++|+||||||||||+ ++.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3559999999999999999 5554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.78  E-value=6.2e-06  Score=68.63  Aligned_cols=31  Identities=29%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++.+++++     +++|+|||||||||++ .+.+.
T Consensus        92 ~l~~~~~~g~-----vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           92 ELQLGFRKPA-----VIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SCCCCSSSCE-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccccCCCc-----EEEEEcCCCCCHHHHHHHHHHH
Confidence            3455565555     8999999999999999 55553

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=7e-06  Score=63.15  Aligned_cols=34  Identities=15%  Similarity=-0.007  Sum_probs=19.3

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ....++++.+.+++     .|+|+||+||||||+. .++.
T Consensus        13 ~~~~~~~~~~~~~~-----~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           13 LGTENLYFQSNAMV-----RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             -----------CCC-----EEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCceeEecCCCC-----EEEEEcCCCCCHHHHHHHHHH
Confidence            34556777776555     8999999999999999 5543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.75  E-value=6.7e-06  Score=74.81  Aligned_cols=33  Identities=15%  Similarity=0.103  Sum_probs=28.8

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      ..++.++|+.|++||     +++|+||||||||||+ ++
T Consensus       335 ~~~L~~vsl~I~~Ge-----~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGT-----FVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             STTCCSEEEEEETTS-----EEEEECSTTSSHHHHHTTT
T ss_pred             ccccccceeEecCCC-----EEEEEeeCCCCHHHHHHHH
Confidence            346888899998888     8999999999999999 54

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.74  E-value=1.1e-05  Score=62.18  Aligned_cols=25  Identities=24%  Similarity=-0.028  Sum_probs=20.1

Q ss_pred             ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+.+++|+||||||||||+ ++..
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            334559999999999999999 5544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.73  E-value=2.4e-06  Score=74.71  Aligned_cols=49  Identities=12%  Similarity=0.023  Sum_probs=36.0

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      +.+++++++.+.  ..+++++ +.+.+|+     +++|+||||||||||+ +|.++..
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq-----~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQ-----RMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTC-----EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence            445556665553  4566666 7777777     8999999999999999 7776543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.71  E-value=1.4e-05  Score=71.53  Aligned_cols=26  Identities=19%  Similarity=0.040  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .|.+++|+||||||||||+ ++.+.-.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3459999999999999999 7777654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.71  E-value=7.8e-06  Score=62.90  Aligned_cols=23  Identities=22%  Similarity=-0.013  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.+++|+||||||||||+ ++.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            448999999999999999 66664

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.70  E-value=8.9e-06  Score=62.67  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccC--Ccc-eeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVD--GKA-YHFVTRADMEERIAAGEFLEHAEFAANLY  135 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~--G~~-y~fvs~~~f~~~~~~~~fle~~~~~gn~y  135 (166)
                      ++++|+||||||||||+  |+..++. .+..+..+++.+...+++  |.+ |++++ ..+.... -..-.+|..+.+ .|
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~-i~~~~~~~~~~~-~~   82 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTI-VASQQRWALMTE-TP   82 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEE-EECSSEEEEEEE-CS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceee-cccchhheeeee-cc
Confidence            48999999999999999  6665542 334455556656555554  333 32221 0000000 011234444333 47


Q ss_pred             CCChHHHHHHHhh
Q psy18088        136 GTSQCGRQNGRNY  148 (166)
Q Consensus       136 G~~~~~I~~ile~  148 (166)
                      +.+...+++++..
T Consensus        83 ~~~~~~L~~ll~r   95 (174)
T 1np6_A           83 DEEELDLQFLASR   95 (174)
T ss_dssp             SSCCCCHHHHHHH
T ss_pred             CCchhhHHHHHHh
Confidence            7776777777753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.68  E-value=9.4e-06  Score=73.81  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhh
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSF   76 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL   76 (166)
                      ..++.++|+.|++|+     +++|+||||||||||
T Consensus        31 ~~~L~~vsl~i~~Ge-----~~~liGpNGaGKSTL   60 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGK-----LVVLTGLSGSGKSSL   60 (670)
T ss_dssp             STTCCSEEEEEETTS-----EEEEECSTTSSHHHH
T ss_pred             ccceeccEEEECCCC-----EEEEECCCCCCHHHH
Confidence            457889999999888     899999999999999

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.68  E-value=5.5e-06  Score=70.52  Aligned_cols=97  Identities=13%  Similarity=0.012  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCCChhhh--c---cccccccceeeeEEeecCCCCCCccCCcce--eecCHHHHHHHHHcCCccceeeehhh
Q psy18088         61 ACILHVDFAMFGKTSF--L---FLRTVLDRFGFSVSHTTRGPRPGEVDGKAY--HFVTRADMEERIAAGEFLEHAEFAAN  133 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL--~---Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y--~fvs~~~f~~~~~~~~fle~~~~~gn  133 (166)
                      |+|+|+||+++|--.+  +   |+..++.+|+..|++| |.+++-+..+..+  ++.++..|+..++.+.++|       
T Consensus       143 RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~e-------  214 (337)
T 4dey_A          143 RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAE-------  214 (337)
T ss_dssp             CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHH-------
T ss_pred             CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHH-------
Confidence            4799999999998864  3   8888888899998755 7776666666543  3455555666555555554       


Q ss_pred             hcCCChHHHHHHHh-----hccCChh-HHhhCCccCCCC
Q psy18088        134 LYGTSQCGRQNGRN-----YLIFNTL-AAKCLPTVFPFA  166 (166)
Q Consensus       134 ~yG~~~~~I~~ile-----~v~L~~~-~~~~l~~~~p~~  166 (166)
                       ++.+.+++.++.+     +|+++.+ |.+.++..+|.+
T Consensus       215 -v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~  252 (337)
T 4dey_A          215 -VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAP  252 (337)
T ss_dssp             -HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCC
T ss_pred             -HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCC
Confidence             2223333333332     4667787 999999988864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.66  E-value=6.7e-06  Score=66.96  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+++|+||||||||||+ ++.+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH
Confidence            3448999999999999999 5554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.64  E-value=1.4e-05  Score=61.41  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||||||||||. ++..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.63  E-value=1.2e-05  Score=59.77  Aligned_cols=23  Identities=22%  Similarity=0.007  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.+|+|+||+|||||||. +++..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999 66653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.63  E-value=1.2e-05  Score=60.86  Aligned_cols=22  Identities=18%  Similarity=0.001  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++|+||||||||||+ ++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            458999999999999999 5554

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.62  E-value=1.5e-05  Score=68.16  Aligned_cols=31  Identities=29%  Similarity=0.213  Sum_probs=23.7

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++.+++++     +++|+|||||||||++ .+.+.
T Consensus       149 ~l~l~~~~g~-----vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          149 ELQLGFRKPA-----VIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SCCCCSSSSE-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcceecCCCe-----EEEEEcCCCChHHHHHHHHHhh
Confidence            3455555555     8999999999999999 55553

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.61  E-value=7.7e-06  Score=69.41  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=24.9

Q ss_pred             CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++.+++|+     .++|+||||||||||+ ++.++
T Consensus       166 ~~l~~~i~~G~-----~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          166 SFLRRAVQLER-----VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             HHHHHHHHTTC-----CEEEEESSSSCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence            45566666666     8999999999999999 55443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.61  E-value=1.7e-05  Score=61.05  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++++|+||||||||||+ ++.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 6654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.61  E-value=2e-05  Score=65.84  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=20.9

Q ss_pred             cCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..+.+++|+||||||||||+ +|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34559999999999999999 66664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.60  E-value=9e-06  Score=68.32  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++++.+++++     .++|+||||||||||+ ++.++
T Consensus       163 ~l~~~i~~g~-----~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          163 AIKDGIAIGK-----NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             HHHHHHHHTC-----CEEEEESTTSCHHHHHHHGGGG
T ss_pred             hhhhhccCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence            3445555555     8999999999999999 55554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.60  E-value=2.3e-05  Score=64.71  Aligned_cols=24  Identities=17%  Similarity=0.038  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+.+++|+||||||||||+ ++.+.
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            3558999999999999999 55543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.60  E-value=1.6e-05  Score=70.87  Aligned_cols=32  Identities=22%  Similarity=0.109  Sum_probs=25.0

Q ss_pred             CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++.+.+++     +++|+||||||||||+ +|.++
T Consensus       284 ~~Isl~i~~Ge-----VI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          284 EPLNVEGKAPF-----VILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             CCCCCCSCTTE-----EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeeccCCe-----EEEEECCCcccHHHHHHHHHHH
Confidence            45666666555     8999999999999999 55553

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.59  E-value=1.7e-05  Score=66.04  Aligned_cols=24  Identities=25%  Similarity=0.123  Sum_probs=20.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+.+++|+|||||||||++ .+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4669999999999999999 65543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.58  E-value=1.3e-05  Score=76.58  Aligned_cols=41  Identities=7%  Similarity=-0.016  Sum_probs=33.6

Q ss_pred             eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++++.+. ..++.++++.+.+|+     +++|+||||||||||+ +|.
T Consensus       440 ~ls~~yg~~~iL~~vsl~I~~Ge-----~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          440 EFSLAYGAKILLNKTQLRLKRAR-----RYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCEEeEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHh
Confidence            5666663 456778899998888     8999999999999999 665

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.57  E-value=3.1e-06  Score=68.77  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             ceEEeee-ccee--eecCCCCCCCCccc---ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         30 ITVRILL-NYRT--CISASGNPDSGIRS---GRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        30 ~~~~~~~-~~~~--~~~~~~~~~~~v~~---~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++++++ ++.+  ...++.+.++.+.+   ++     .|+|+||+||||||+. +++.
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~-----~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGR-----SMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTC-----CEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCC-----EEEEECCCCCCHHHHHHHHHH
Confidence            5666677 6555  24567778888877   66     7999999999999999 6655

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.56  E-value=6.2e-06  Score=70.00  Aligned_cols=48  Identities=15%  Similarity=0.063  Sum_probs=35.2

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..+..++++.+.  ..++++. +.|.+|+     .++|+||||+|||||+ +|.+..
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq-----~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQ-----RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTC-----EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence            344455555553  4566666 7787777     8999999999999999 666644

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.54  E-value=1.2e-05  Score=63.80  Aligned_cols=20  Identities=10%  Similarity=-0.076  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .+++|+||+|||||||+ ++.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999 666

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.54  E-value=1.4e-05  Score=67.37  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ++.++|+||||||||||+ ++.++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            448999999999999999 776654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.53  E-value=2.6e-05  Score=58.09  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++|+|+|||||||||+.  |...++
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            458999999999999999  544443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.51  E-value=4.3e-05  Score=60.19  Aligned_cols=24  Identities=21%  Similarity=0.112  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .|.+|+|.||+||||||++ ++.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4559999999999999999 77665

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.51  E-value=8.1e-06  Score=69.84  Aligned_cols=23  Identities=22%  Similarity=0.075  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+++|+||||||||||+ ++.+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhc
Confidence            3558999999999999999 4443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.50  E-value=3.2e-05  Score=66.87  Aligned_cols=53  Identities=28%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD  114 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~  114 (166)
                      .-++|+|++|||||||+  |+.... .+....+.|||.+..+.  .+|.++.+++...
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G  237 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG  237 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSC
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCC
Confidence            47999999999999999  544432 35566778899887775  4777776665443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.49  E-value=2.5e-05  Score=59.92  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++|+||||||||||+ ++.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999 55543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.49  E-value=2.3e-05  Score=64.10  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++|+||||||||||+ ++.+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999 55553

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.48  E-value=8.3e-06  Score=70.95  Aligned_cols=39  Identities=21%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             CCCCCCCCccccc---------------ccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         44 ASGNPDSGIRSGR---------------IHFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        44 ~~~~~~~~v~~~~---------------~~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++.++++.|++|+               ...+.+++|+||||||||||+ ++.+.
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4455677777666               223347999999999999999 55553

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.48  E-value=4.4e-05  Score=63.12  Aligned_cols=19  Identities=21%  Similarity=0.001  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+++++|+||||||||||+
T Consensus       164 ~G~i~~l~G~sG~GKSTLl  182 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSIL  182 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHH
Confidence            3559999999999999999

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.46  E-value=3.4e-05  Score=57.54  Aligned_cols=22  Identities=9%  Similarity=0.034  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++|+||+||||||+. ++..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            458999999999999999 6554

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.44  E-value=4e-05  Score=61.43  Aligned_cols=21  Identities=19%  Similarity=-0.010  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.+|+|+||||||||||+ +++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999 766

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.43  E-value=1.9e-05  Score=69.12  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=26.2

Q ss_pred             CCCCCCCcccccccCCcE--EEEEcCCCCChhhhc-ccccc
Q psy18088         45 SGNPDSGIRSGRIHFFAC--ILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~--ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      +.++++.+++|+     +  ++|+||||||||||+ ++.+.
T Consensus        30 L~~vsl~i~~Ge-----i~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGF-----CFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CC-----EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCC-----eeEEEEECCCCCCHHHHHHHHhCc
Confidence            556777888777     8  999999999999999 55543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.40  E-value=4.8e-05  Score=58.85  Aligned_cols=21  Identities=14%  Similarity=0.002  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..|+|+||+||||||+. ++..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999 6654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.39  E-value=2.2e-05  Score=69.03  Aligned_cols=46  Identities=17%  Similarity=0.035  Sum_probs=32.2

Q ss_pred             cCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         28 AGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++++.+|++.+.     +.++.+++|+     +++|+||||||||||+ ++.++.
T Consensus       116 ~~mi~~~nl~~~y~-----~vsl~i~~Ge-----~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          116 HTMKYIYNLHFMLE-----KIRMSNFEGP-----RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CTHHHHHHHHHHHH-----HHHHHSSSCC-----CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             cchhhhhhhhehhh-----cCceEeCCCC-----EEEEECCCCCCHHHHHHHHhCcc
Confidence            34455555554442     4556666666     8999999999999999 766643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.36  E-value=6.3e-05  Score=59.75  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCCChhhhc-cc-cccccceeeeEEeecCCCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL-FL-RTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li-~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      ++.+|+|.||+||||||+. ++ ..+..  +..+ .+|+.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~   65 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGV   65 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCC
Confidence            4669999999999999999 44 44442  3333 456777554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.36  E-value=6.4e-05  Score=57.72  Aligned_cols=23  Identities=22%  Similarity=0.008  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+|+|+||||||||||. ++..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999 5555

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.35  E-value=1.9e-05  Score=69.88  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=29.7

Q ss_pred             eecCCCCCCC-CcccccccCCcEEEEEcCCCCChhhhc-c--cccc
Q psy18088         41 CISASGNPDS-GIRSGRIHFFACILHVDFAMFGKTSFL-F--LRTV   82 (166)
Q Consensus        41 ~~~~~~~~~~-~v~~~~~~~~~~ivLiGPSGsGKSTL~-L--i~~~   82 (166)
                      ...+++++++ .+.+|+     +++|+||||||||||+ +  +.+.
T Consensus        24 g~~~Ld~i~~G~i~~Ge-----~~~l~G~nGsGKSTL~~~~ll~Gl   64 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGR-----STLVSGTSGTGKTLFSIQFLYNGI   64 (525)
T ss_dssp             CCTTHHHHTTSSEETTS-----EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CchhHHHhcCCCCCCCe-----EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3566777787 777777     8999999999999999 5  5554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.33  E-value=4.4e-05  Score=64.28  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+++|+|||||||||++ .+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4669999999999999999 5554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.32  E-value=5.4e-05  Score=57.83  Aligned_cols=38  Identities=16%  Similarity=0.078  Sum_probs=25.0

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~   99 (166)
                      +.+|+|.|++||||||+. .+.. +.. .+..+ .++|.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~   49 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV-KHLYFPNR   49 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE-EEEESSCT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE-EEEecCCC
Confidence            568999999999999999 5544 321 12222 34666643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.31  E-value=6.1e-05  Score=55.35  Aligned_cols=20  Identities=15%  Similarity=-0.059  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|+||+||||||+. .++.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999 5543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.30  E-value=5e-05  Score=58.98  Aligned_cols=21  Identities=14%  Similarity=0.134  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++|+||||||||||+ ++.+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHh
Confidence            37999999999999999 5544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.30  E-value=7e-05  Score=56.27  Aligned_cols=22  Identities=18%  Similarity=-0.019  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.++|+||+|+|||||+ .+..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.30  E-value=2.6e-05  Score=63.37  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=25.5

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+++.++.+++|+     +++|+||||+|||||+ .+..
T Consensus        23 ~~Ld~i~~~l~~G~-----~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           23 TGINDKTLGARGGE-----VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTHHHHHCSBCTTC-----EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCe-----EEEEEeCCCCCHHHHHHHHHH
Confidence            34445555666666     8999999999999999 4444

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.30  E-value=6.8e-05  Score=61.95  Aligned_cols=23  Identities=17%  Similarity=0.091  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+++|+||||||||||+ ++.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            3459999999999999999 6655

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.29  E-value=7.4e-05  Score=57.52  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      ++++|+|+||||||||+  |+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            47999999999999999  766654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.29  E-value=7.5e-05  Score=55.29  Aligned_cols=22  Identities=18%  Similarity=0.165  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. .+..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            458999999999999999 5444

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.29  E-value=3.3e-05  Score=64.71  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+++++|+||||||||||+ .+.+
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            3559999999999999999 4443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.28  E-value=4.2e-05  Score=58.54  Aligned_cols=33  Identities=18%  Similarity=0.069  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTR   95 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR   95 (166)
                      +|+|.||+||||||++  |...+. ..+..+..++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~-~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR-AAGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH-EEEEEEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEee
Confidence            7999999999999999  444443 23444444444

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.27  E-value=5.3e-05  Score=60.73  Aligned_cols=41  Identities=29%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccce---eeeEEeecCCCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRF---GFSVSHTTRGPRPG  100 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f---~~~v~~TTR~p~~g  100 (166)
                      .+.+|+|.||+||||||+.  |.+.+...+   +..+ .+||.|...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t   69 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGT   69 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCC
Confidence            4669999999999999999  555554322   4444 478888543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.26  E-value=4e-05  Score=61.14  Aligned_cols=22  Identities=14%  Similarity=-0.019  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..|+|+||+||||||+. .+..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            448999999999999999 5543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.25  E-value=6.9e-05  Score=57.32  Aligned_cols=21  Identities=19%  Similarity=0.161  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|+|+||+|||||||. .+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999 5543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.24  E-value=5.7e-05  Score=63.51  Aligned_cols=45  Identities=9%  Similarity=-0.080  Sum_probs=30.5

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++..++++.+. ..++.++++.+.+++     +++|+||+|||||||+ .+.
T Consensus        30 ie~~~~~~~~~~~~~l~~i~~~~~~g~-----~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           30 AESRRADHRAAVRDLIDAVLPQTGRAI-----RVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCSE-----EEEEECCTTSCHHHHHHHHH
T ss_pred             HeeCCcccccChHHHHHhCCcccCCCe-----EEEEECCCCCCHHHHHHHHH
Confidence            33444444442 234555666666666     8999999999999999 443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.23  E-value=1.9e-05  Score=60.55  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChhhhc-cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +.++|+||||||||||+ ++.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999 655543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.21  E-value=0.00011  Score=55.66  Aligned_cols=22  Identities=27%  Similarity=0.150  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.|+|+|++||||||+. .++.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            448999999999999999 5554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.19  E-value=0.00011  Score=56.25  Aligned_cols=20  Identities=25%  Similarity=-0.079  Sum_probs=17.6

Q ss_pred             cCCcEEEEEcCCCCChhhhc
Q psy18088         58 HFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.+++|+||+|||||||+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~   40 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFS   40 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHH
Confidence            34558999999999999999

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.19  E-value=0.00011  Score=54.93  Aligned_cols=22  Identities=9%  Similarity=0.024  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.||+||||||+. .++.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.18  E-value=0.00012  Score=53.40  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .+|+|+||+||||||+. .+.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L~   22 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLLK   22 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            37999999999999999 443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.17  E-value=8.7e-05  Score=58.64  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~   99 (166)
                      .+.+|+|.||+||||||+.  |...+.. .+..+ .+||.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~   45 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGG   45 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCC
Confidence            3669999999999999999  4444442 33344 57788854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.17  E-value=0.00011  Score=55.65  Aligned_cols=22  Identities=23%  Similarity=0.073  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|++||||||+. .+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            568999999999999999 4443

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.17  E-value=7.3e-05  Score=60.22  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~   99 (166)
                      +.+|+|.||+||||||+.  |...+. ..+..+..+||.|..
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~   67 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGG   67 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCC
Confidence            569999999999999999  444443 234444567888853

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.17  E-value=0.00012  Score=56.46  Aligned_cols=22  Identities=18%  Similarity=0.054  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++|+||||||||||+ .+..
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.16  E-value=0.00012  Score=54.85  Aligned_cols=23  Identities=30%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+|+|+|++||||||+. .+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999 4443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.15  E-value=0.00012  Score=54.43  Aligned_cols=23  Identities=17%  Similarity=-0.052  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++.++|+||+|+|||||+ .+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            3558999999999999999 5544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.15  E-value=0.00014  Score=54.48  Aligned_cols=16  Identities=19%  Similarity=-0.027  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +.+|+||||||||||+
T Consensus        28 ~~~i~G~NGsGKStll   43 (182)
T 3kta_A           28 FTAIVGANGSGKSNIG   43 (182)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             cEEEECCCCCCHHHHH
Confidence            8999999999999999

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.14  E-value=0.00012  Score=54.81  Aligned_cols=22  Identities=27%  Similarity=0.194  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|+|+||+||||||+. .++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.14  E-value=0.00014  Score=55.71  Aligned_cols=21  Identities=14%  Similarity=-0.018  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+|+|+||+||||||+. +++.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 6655

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.13  E-value=0.00016  Score=60.07  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++++|+||||||||||+ .+.+
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHh
Confidence            38999999999999999 4444

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.12  E-value=0.00011  Score=54.82  Aligned_cols=22  Identities=14%  Similarity=0.089  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +|+|.||+||||||+.  |...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999  444444

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.11  E-value=0.00014  Score=62.03  Aligned_cols=25  Identities=16%  Similarity=0.046  Sum_probs=20.5

Q ss_pred             ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+.+++|+|||||||||++ ++.+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            445679999999999999999 4444

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.10  E-value=0.00015  Score=54.31  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+|+|+|++||||||+. ++..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999 5544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.09  E-value=0.00013  Score=55.64  Aligned_cols=22  Identities=23%  Similarity=0.007  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|++||||||+. .+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            558999999999999999 4443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.09  E-value=0.00015  Score=61.10  Aligned_cols=22  Identities=18%  Similarity=0.049  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++|+||||||||||+ ++..
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            448999999999999999 5554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.07  E-value=0.00016  Score=59.67  Aligned_cols=22  Identities=14%  Similarity=-0.118  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||||||||||+ ++..
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.05  E-value=0.00015  Score=54.25  Aligned_cols=22  Identities=14%  Similarity=0.004  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. +++.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.05  E-value=0.00018  Score=62.50  Aligned_cols=24  Identities=25%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+.+++|+||+||||||++  ++...
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            4569999999999999999  44443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.03  E-value=0.00014  Score=58.16  Aligned_cols=41  Identities=22%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~   99 (166)
                      .+.+|+|.|++||||||+. .+. .+....+..+..+||.|..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            3569999999999999999 444 4432144566676888863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.03  E-value=0.00022  Score=54.43  Aligned_cols=25  Identities=12%  Similarity=-0.217  Sum_probs=19.8

Q ss_pred             ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+.+++|+||+|+|||||+ .+..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344559999999999999999 4433

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.03  E-value=0.00016  Score=62.92  Aligned_cols=41  Identities=17%  Similarity=0.095  Sum_probs=24.7

Q ss_pred             CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +++.+.++++.+. ..++.++++.           |+|+||||||||||+ .+.
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~-----------I~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFT-----------LMVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEE-----------EEEECCTTSSHHHHHHHHT
T ss_pred             CcEEEEecceeECCEEEecCCCEE-----------EEEECCCCCcHHHHHHHHh
Confidence            3566667766653 3445555433           599999999999999 443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.02  E-value=0.00014  Score=54.23  Aligned_cols=17  Identities=24%  Similarity=0.227  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .-|+|+|++|||||||+
T Consensus         5 ~ki~ivG~~g~GKStLl   21 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLL   21 (172)
T ss_dssp             EEEEEEESTTSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            37999999999999999

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.02  E-value=0.00016  Score=62.36  Aligned_cols=44  Identities=14%  Similarity=0.029  Sum_probs=29.4

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE  101 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge  101 (166)
                      ..+..++|+|++|||||||+ .+.+..---....+.||+.|..|.
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~   62 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK   62 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeee
Confidence            34558999999999999999 444421002234456677777765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.01  E-value=0.0002  Score=53.80  Aligned_cols=22  Identities=18%  Similarity=-0.053  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. .++.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.00  E-value=0.00022  Score=54.09  Aligned_cols=22  Identities=23%  Similarity=0.110  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|++||||||+. .+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.97  E-value=0.00024  Score=55.09  Aligned_cols=21  Identities=19%  Similarity=-0.086  Sum_probs=18.2

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.+++|+||+|+|||||+
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~   41 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQIC   41 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHH
Confidence            344559999999999999999

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.96  E-value=0.00013  Score=65.88  Aligned_cols=21  Identities=33%  Similarity=0.271  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++|+||||||||||+ ++.+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            4999999999999999 66654

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.95  E-value=2.8e-05  Score=62.42  Aligned_cols=20  Identities=15%  Similarity=-0.037  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++|+||||||||||+ +|.+
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999999 6655

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.95  E-value=0.00026  Score=54.65  Aligned_cols=24  Identities=17%  Similarity=0.086  Sum_probs=19.8

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++.+|+|+|++||||||+. .+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34569999999999999999 5544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.94  E-value=0.00022  Score=54.35  Aligned_cols=20  Identities=20%  Similarity=0.124  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|+||+||||||+. +++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            6999999999999999 6655

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.94  E-value=0.00025  Score=52.84  Aligned_cols=23  Identities=9%  Similarity=-0.142  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++++|+|.|++||||||+. .+..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999 5543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.94  E-value=0.00021  Score=53.45  Aligned_cols=21  Identities=29%  Similarity=0.197  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++.|+|+|++||||||+. .++
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            457999999999999999 554

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.94  E-value=0.00022  Score=60.59  Aligned_cols=19  Identities=21%  Similarity=0.043  Sum_probs=17.3

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+++|+||||||||||+
T Consensus       122 ~~g~i~I~GptGSGKTTlL  140 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTL  140 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            4559999999999999999

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.94  E-value=0.00023  Score=53.58  Aligned_cols=20  Identities=15%  Similarity=0.012  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.|++||||||+. +++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            6899999999999999 5554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.91  E-value=0.00023  Score=67.52  Aligned_cols=30  Identities=23%  Similarity=0.204  Sum_probs=26.1

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.++++.+..|+     +++|+||||||||||+
T Consensus       598 ~~Lk~Vsl~I~~Ge-----iv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLGV-----FVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESSS-----EEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCCc-----EEEEEccCCCChhhhH
Confidence            45778888888888     8999999999999995

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.91  E-value=0.00028  Score=53.27  Aligned_cols=23  Identities=22%  Similarity=0.044  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ..+|+|+|++||||||+. +++..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            348999999999999999 66553

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.90  E-value=0.00028  Score=52.65  Aligned_cols=22  Identities=9%  Similarity=-0.105  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+|++||||||+. .+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.89  E-value=0.00023  Score=53.64  Aligned_cols=23  Identities=17%  Similarity=-0.071  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+|+|+||+||||||+. .++.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999 5544

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.88  E-value=0.00031  Score=52.89  Aligned_cols=23  Identities=17%  Similarity=0.018  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+|+|+|++||||||+. .+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3569999999999999999 4443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.87  E-value=0.00033  Score=54.06  Aligned_cols=22  Identities=9%  Similarity=-0.117  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|++||||||+. +++.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 6655

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.86  E-value=0.00025  Score=55.02  Aligned_cols=22  Identities=14%  Similarity=0.087  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. .++.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999 5544

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.83  E-value=0.00033  Score=62.28  Aligned_cols=25  Identities=20%  Similarity=0.101  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .+..++|+||+||||||++  |+...+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4557999999999999999  544443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.82  E-value=0.00026  Score=53.10  Aligned_cols=21  Identities=19%  Similarity=0.094  Sum_probs=17.7

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.|+|+|++||||||+. .++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999 5543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.81  E-value=0.00024  Score=56.15  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceee-eEEeecCCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGF-SVSHTTRGPRP   99 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~-~v~~TTR~p~~   99 (166)
                      |.+|+|.|++||||||+.  |...+.. .+. .+ .+||.|..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v-~~~rep~~   43 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDM-VFTREPGG   43 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCE-EEEESSCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcc-eeeeCCCC
Confidence            569999999999999999  4444432 233 23 67888853

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.80  E-value=0.00023  Score=67.78  Aligned_cols=30  Identities=17%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.++|+.|+.|+     +++|+|+||||||||+
T Consensus       638 ~~Lk~Vsl~I~~Ge-----iv~I~G~nGSGKSTLl  667 (972)
T 2r6f_A          638 HNLKNVSVKIPLGT-----FVAVTGVSGSGKSTLV  667 (972)
T ss_dssp             SSCCSEEEEEESSS-----EEECCBCTTSSHHHHH
T ss_pred             cccccceEEEcCCC-----EEEEEcCCCCCHHHHH
Confidence            35778888888888     8999999999999999

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.78  E-value=0.00034  Score=51.59  Aligned_cols=21  Identities=24%  Similarity=0.035  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|+|.|++||||||+. .++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 5544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.77  E-value=0.00041  Score=59.48  Aligned_cols=25  Identities=24%  Similarity=-0.007  Sum_probs=20.5

Q ss_pred             ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+++++|+||+|+|||||+ ++.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            345559999999999999999 5554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.77  E-value=0.0005  Score=54.67  Aligned_cols=23  Identities=13%  Similarity=-0.002  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++.++|+||||+|||||.  |+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999  66653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.77  E-value=0.00035  Score=55.78  Aligned_cols=23  Identities=22%  Similarity=0.036  Sum_probs=18.9

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+..|+|+||+||||||+. .+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3558999999999999999 4443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.76  E-value=0.00024  Score=66.81  Aligned_cols=29  Identities=17%  Similarity=0.123  Sum_probs=26.0

Q ss_pred             CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+.++|+.|+.|+     +++|+|+||||||||+
T Consensus       512 ~L~~vsl~i~~Ge-----iv~I~G~nGSGKSTLl  540 (842)
T 2vf7_A          512 NLDNLDVRFPLGV-----MTSVTGVSGSGKSTLV  540 (842)
T ss_dssp             TEEEEEEEEESSS-----EEEEECCTTSSHHHHC
T ss_pred             ccccceEEEcCCC-----EEEEEcCCCcCHHHHH
Confidence            5677788888888     8999999999999999

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.76  E-value=0.00037  Score=51.84  Aligned_cols=21  Identities=24%  Similarity=-0.045  Sum_probs=14.3

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.+|+|.|++||||||+. .++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999 554

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.76  E-value=0.00049  Score=54.71  Aligned_cols=28  Identities=14%  Similarity=-0.025  Sum_probs=22.2

Q ss_pred             cccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         54 SGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        54 ~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+..++++|+|+||+||||+|+. ++..
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344456779999999999999999 6654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.76  E-value=0.00042  Score=53.99  Aligned_cols=22  Identities=14%  Similarity=0.016  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. .++.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.75  E-value=0.00033  Score=52.29  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|+||+||||||+. .++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            5899999999999999 5544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.73  E-value=0.00046  Score=54.10  Aligned_cols=20  Identities=25%  Similarity=0.107  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999  5544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.72  E-value=0.00047  Score=52.13  Aligned_cols=16  Identities=19%  Similarity=0.310  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      .++|+||+|||||||+
T Consensus        31 kv~lvG~~g~GKSTLl   46 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLL   46 (191)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            6899999999999999

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.71  E-value=0.00053  Score=52.25  Aligned_cols=23  Identities=17%  Similarity=-0.021  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+|+|+||+||||||+. .++.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999 5544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.69  E-value=0.00045  Score=55.62  Aligned_cols=21  Identities=14%  Similarity=-0.132  Sum_probs=18.2

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.+++|+||+|+|||||+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~   47 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLA   47 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHH
Confidence            344559999999999999999

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.69  E-value=0.00057  Score=51.96  Aligned_cols=21  Identities=19%  Similarity=0.021  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .++|+|.|++||||||+. .+.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999 554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.68  E-value=0.00036  Score=62.63  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=20.6

Q ss_pred             ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+.+++|+|+||||||||+ ++++
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHH
Confidence            345569999999999999999 6554

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.67  E-value=0.00055  Score=51.83  Aligned_cols=21  Identities=14%  Similarity=0.018  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|+|.|++||||||+. .++.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 5544

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.66  E-value=0.00025  Score=60.00  Aligned_cols=21  Identities=14%  Similarity=-0.156  Sum_probs=18.1

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      ..+ +++|+||||||||||+ .|
T Consensus        59 ~~G-~~~lvG~NGaGKStLl~aI   80 (415)
T 4aby_A           59 GGG-FCAFTGETGAGKSIIVDAL   80 (415)
T ss_dssp             CSS-EEEEEESHHHHHHHHTHHH
T ss_pred             CCC-cEEEECCCCCCHHHHHHHH
Confidence            345 7999999999999999 55

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.64  E-value=0.00048  Score=52.09  Aligned_cols=16  Identities=19%  Similarity=0.310  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      .++|+||+|||||||+
T Consensus         7 kv~lvG~~g~GKSTLl   22 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLL   22 (199)
T ss_dssp             EEEEESSTTSSHHHHH
T ss_pred             EEEEECcCCCCHHHHH
Confidence            5899999999999999

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.62  E-value=0.00064  Score=54.87  Aligned_cols=22  Identities=18%  Similarity=0.165  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++|+|+||+||||||+. .+..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999 4443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.61  E-value=0.00067  Score=50.67  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  ++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999  554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.61  E-value=0.00036  Score=57.56  Aligned_cols=15  Identities=20%  Similarity=0.454  Sum_probs=14.4

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      |+|+||||||||||+
T Consensus        21 I~lvG~nG~GKSTLl   35 (301)
T 2qnr_A           21 LMVVGESGLGKSTLI   35 (301)
T ss_dssp             EEEEEETTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            599999999999999

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.61  E-value=0.00064  Score=54.66  Aligned_cols=21  Identities=24%  Similarity=-0.024  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+|+|.||||||||||. ++..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            48999999999999999 6653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.60  E-value=0.00066  Score=52.51  Aligned_cols=22  Identities=14%  Similarity=-0.010  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+||+||||||+. .++.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.59  E-value=0.00029  Score=66.84  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++++.+++++     +++|+||||+||||++ .+.
T Consensus       665 dvsl~~~~g~-----i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          665 NTDLSEDSER-----VMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             EEEECTTSCC-----EEEEESCCCHHHHHHHHHHH
T ss_pred             cccccCCCCe-----EEEEECCCCCchHHHHHHHH
Confidence            3344555444     8999999999999999 554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.59  E-value=0.0006  Score=57.95  Aligned_cols=44  Identities=20%  Similarity=0.153  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcce
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAY  107 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y  107 (166)
                      .++|+|++|||||||+  |.....  .....+.+|+.+..+.  ++|..+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEE
Confidence            5999999999999999  544322  3334556777776654  355443

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.56  E-value=0.00065  Score=52.13  Aligned_cols=19  Identities=16%  Similarity=0.081  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .|+|+||+||||||+. .+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            4889999999999999 553

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.56  E-value=0.0021  Score=47.48  Aligned_cols=16  Identities=31%  Similarity=0.235  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|++|||||||+
T Consensus        16 ki~vvG~~~~GKssL~   31 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNL   31 (198)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5899999999999999

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.55  E-value=0.00071  Score=49.63  Aligned_cols=19  Identities=16%  Similarity=0.207  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      .++|+|++|||||||+  +..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999  544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.55  E-value=0.00069  Score=57.10  Aligned_cols=27  Identities=26%  Similarity=0.043  Sum_probs=21.3

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+..++++.|+||+|||||||+ .+..
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~  153 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAV  153 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44556669999999999999999 4433

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.54  E-value=0.00068  Score=50.57  Aligned_cols=20  Identities=25%  Similarity=0.046  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.|++||||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999 4443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.54  E-value=0.00062  Score=48.80  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      -|+|+|++|||||||+  ++...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            4899999999999999  65543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.53  E-value=0.00093  Score=49.54  Aligned_cols=17  Identities=29%  Similarity=0.235  Sum_probs=16.0

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+||+|+|||||+
T Consensus        24 g~~~I~G~NGsGKStil   40 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLL   40 (149)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            48999999999999999

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.53  E-value=0.00058  Score=56.16  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .+++|+|++|||||||+  |+..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            37999999999999999  5543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.51  E-value=0.00079  Score=53.48  Aligned_cols=22  Identities=18%  Similarity=-0.140  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+|+|.|++||||||+. .++.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            348999999999999999 5544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.50  E-value=0.0011  Score=55.49  Aligned_cols=26  Identities=23%  Similarity=0.143  Sum_probs=20.5

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ++++.+++     +++++|+||+|+||||++
T Consensus        97 ~l~~~~~~-----~~vI~ivG~~G~GKTT~~  122 (320)
T 1zu4_A           97 RIDFKENR-----LNIFMLVGVNGTGKTTSL  122 (320)
T ss_dssp             CCCCCTTS-----CEEEEEESSTTSSHHHHH
T ss_pred             CccccCCC-----CeEEEEECCCCCCHHHHH
Confidence            45555444     458999999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.49  E-value=0.00079  Score=51.74  Aligned_cols=20  Identities=10%  Similarity=-0.001  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|+||+||||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999 5543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.48  E-value=0.00091  Score=52.42  Aligned_cols=22  Identities=14%  Similarity=-0.133  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..|+|+|++||||||+. +++.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5554

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.48  E-value=0.00068  Score=55.72  Aligned_cols=22  Identities=9%  Similarity=-0.016  Sum_probs=15.3

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|||||||||+. .+..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            448999999999999999 4443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.46  E-value=0.00028  Score=61.33  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=17.7

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++|+|++|||||||+ .+..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            37999999999999999 4443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.44  E-value=0.0013  Score=56.63  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=19.8

Q ss_pred             cCCcEEEEEcCCCCChhhhc--cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ..+.+|+|+||+||||||+.  |...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999999999999  5544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.43  E-value=0.001  Score=53.35  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|+|++||||||+. .+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.41  E-value=0.00032  Score=53.40  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999  5543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.39  E-value=0.0011  Score=52.22  Aligned_cols=20  Identities=25%  Similarity=0.177  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -++|+||+|+|||||+ .+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999 5554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.39  E-value=0.0011  Score=52.13  Aligned_cols=23  Identities=17%  Similarity=-0.019  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+..|+|+|++||||||+. +++.
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999 5554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.39  E-value=0.00063  Score=63.60  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+++++|+||||+||||++ ++.+
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHH
Confidence            3559999999999999999 5554

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.38  E-value=0.001  Score=48.87  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|.|++||||||+. .++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 5554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.38  E-value=0.0014  Score=51.99  Aligned_cols=25  Identities=20%  Similarity=0.085  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .+.+|+|.|++||||||+.  |.+.+.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3669999999999999999  544444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.38  E-value=0.0013  Score=50.77  Aligned_cols=20  Identities=25%  Similarity=0.012  Sum_probs=17.4

Q ss_pred             cCCcEEEEEcCCCCChhhhc
Q psy18088         58 HFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.+++|+||+|+|||||+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~   40 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFS   40 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH
Confidence            34558999999999999997

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.37  E-value=0.00084  Score=55.70  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++|+||+|+|||||+ ++.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            47999999999999999 6655

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.37  E-value=0.001  Score=56.37  Aligned_cols=16  Identities=19%  Similarity=0.083  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +++|+||+|||||||+
T Consensus        25 ~~~i~G~NGaGKTTll   40 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLF   40 (365)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            7889999999999999

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.36  E-value=0.0011  Score=49.09  Aligned_cols=19  Identities=16%  Similarity=0.207  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      .|+|+|++|||||||+  |..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999  554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.36  E-value=0.0011  Score=56.81  Aligned_cols=18  Identities=11%  Similarity=0.014  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +.+++|+||||||||||+
T Consensus        26 ~~~~~i~G~nG~GKstll   43 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMM   43 (430)
T ss_dssp             CSEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            459999999999999999

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.35  E-value=0.00068  Score=64.41  Aligned_cols=20  Identities=15%  Similarity=0.106  Sum_probs=17.8

Q ss_pred             CcEEEEEcCCCCChhhhc-cc
Q psy18088         60 FACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      +++++|+||||+||||++ .+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            459999999999999999 55

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.34  E-value=0.0015  Score=54.39  Aligned_cols=23  Identities=26%  Similarity=0.034  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+++++|+||+||||||++ .++.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            4569999999999999999 4443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.32  E-value=0.0012  Score=53.54  Aligned_cols=20  Identities=20%  Similarity=0.104  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChhhhc-ccccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      ++|+||+|+|||||+ .+++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999 65553

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.31  E-value=0.0011  Score=51.28  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..|+|+|++||||||+. +++.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999 5554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.31  E-value=0.0011  Score=54.67  Aligned_cols=19  Identities=26%  Similarity=0.141  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+++++|+||+||||||++
T Consensus       104 ~g~vi~lvG~~GsGKTTl~  122 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTL  122 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH
Confidence            3569999999999999999

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.30  E-value=0.00069  Score=51.72  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .-|+|+|++|||||||+  |+..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            36899999999999999  6655

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.29  E-value=0.0022  Score=46.05  Aligned_cols=20  Identities=20%  Similarity=0.383  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999  5543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.29  E-value=0.0013  Score=63.01  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cc
Q psy18088         60 FACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li   79 (166)
                      +++++|+||||+||||++ .+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            569999999999999999 55

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.29  E-value=0.0014  Score=54.19  Aligned_cols=16  Identities=19%  Similarity=0.108  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +.+|+||+|||||||+
T Consensus        26 ~~~i~G~NGsGKS~ll   41 (322)
T 1e69_A           26 VTAIVGPNGSGKSNII   41 (322)
T ss_dssp             EEEEECCTTTCSTHHH
T ss_pred             cEEEECCCCCcHHHHH
Confidence            8999999999999999

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.29  E-value=0.0013  Score=53.51  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+|+|.|++||||||+. .++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 5554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.28  E-value=0.0013  Score=49.53  Aligned_cols=20  Identities=25%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999  5543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.25  E-value=0.0015  Score=54.61  Aligned_cols=19  Identities=32%  Similarity=0.258  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      .|+|+|++|||||||+  |+.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            7999999999999999  554

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.22  E-value=0.0014  Score=48.36  Aligned_cols=21  Identities=24%  Similarity=0.263  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..|+|.|++||||||+. +++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 6554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.21  E-value=0.0016  Score=52.24  Aligned_cols=20  Identities=25%  Similarity=0.177  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -++|+||+|+|||||+ .+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHH
Confidence            3899999999999999 5554

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.19  E-value=0.0014  Score=51.13  Aligned_cols=20  Identities=20%  Similarity=0.061  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.||+||||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999 5544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.17  E-value=0.0021  Score=46.84  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++.++|.||+|+|||+|+  +....
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999  54443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.17  E-value=0.0015  Score=46.70  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999  5544

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.16  E-value=0.0016  Score=50.74  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-++|.|+||+|||||.  |+..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            558999999999999999  6654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.16  E-value=0.0018  Score=61.36  Aligned_cols=28  Identities=18%  Similarity=0.031  Sum_probs=22.2

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +.|+|..+     +.+++++|.|+||||||||+
T Consensus        14 Lkni~~~i-----p~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           14 LKNITVRI-----PKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             CCSBCCEE-----ETTSEEEEEESTTSSSHHHH
T ss_pred             cCcceecc-----CCCcEEEEECCCCCcHHHHH
Confidence            45556554     45559999999999999999

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.14  E-value=0.0016  Score=55.47  Aligned_cols=19  Identities=21%  Similarity=-0.073  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +++|+||||+|||||+ .+.
T Consensus        28 ~~~i~G~nG~GKttll~ai~   47 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAY   47 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHH
Confidence            8999999999999999 443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.14  E-value=0.0017  Score=47.07  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4899999999999999  6544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.12  E-value=0.0019  Score=51.01  Aligned_cols=22  Identities=23%  Similarity=0.058  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.++|.||+|+|||||+ .+..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            346899999999999999 5544

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.11  E-value=0.0024  Score=50.82  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+|+|.|+.||||||+. ++..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            3569999999999999999 5544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.11  E-value=0.0016  Score=60.62  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++++|+||||+||||++ ++.+
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            679999999999999999 5554

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.10  E-value=0.0017  Score=56.17  Aligned_cols=41  Identities=20%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE  101 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge  101 (166)
                      +..++|+|++|||||||+ .+.+.. ......+.||..|..|.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~   63 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESR   63 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEE
Confidence            336999999999999999 443322 12234456777666553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.10  E-value=0.0017  Score=52.90  Aligned_cols=20  Identities=25%  Similarity=0.172  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .|+|+|++|||||||+  |...
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999  5543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.09  E-value=0.0024  Score=48.75  Aligned_cols=19  Identities=16%  Similarity=0.060  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .++.++|.||+|+|||||+
T Consensus        51 ~~~~~ll~G~~G~GKT~la   69 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLI   69 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            3568999999999999999

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.09  E-value=0.002  Score=55.61  Aligned_cols=22  Identities=9%  Similarity=-0.120  Sum_probs=18.8

Q ss_pred             cccCCcEEEEEcCCCCChhhhc
Q psy18088         56 RIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        56 ~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      -+..+.++.|+||||||||||+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl  195 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLC  195 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHH
Confidence            3445559999999999999999

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.08  E-value=0.0019  Score=46.48  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            3899999999999999  5543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.06  E-value=0.0017  Score=46.25  Aligned_cols=20  Identities=15%  Similarity=0.301  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+++|++|||||||+  ++..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999  5543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.05  E-value=0.0022  Score=46.66  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  6544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.04  E-value=0.0023  Score=53.80  Aligned_cols=21  Identities=19%  Similarity=0.124  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCCChhhhc--ccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~   80 (166)
                      +..|+|+|++|||||||+  |+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            448999999999999999  554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.04  E-value=0.0024  Score=49.47  Aligned_cols=17  Identities=29%  Similarity=0.235  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+||+|+|||||+
T Consensus        24 ~~~~I~G~NgsGKStil   40 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLL   40 (203)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             CeEEEEcCCCCCHHHHH
Confidence            48999999999999999

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.04  E-value=0.0018  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999  5543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.04  E-value=0.0019  Score=47.06  Aligned_cols=20  Identities=20%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5544

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.03  E-value=0.0026  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .-|+|+|++|||||||+  ++..
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999  5543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.02  E-value=0.0025  Score=53.08  Aligned_cols=17  Identities=29%  Similarity=0.235  Sum_probs=16.0

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+||+|+|||||+
T Consensus        24 ~~~~i~G~NGsGKS~ll   40 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLL   40 (339)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            48999999999999999

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.02  E-value=0.0018  Score=49.88  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|.||+||||||+. .+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999 5544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0021  Score=46.18  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999  6543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.01  E-value=0.0018  Score=60.92  Aligned_cols=21  Identities=19%  Similarity=0.149  Sum_probs=18.6

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      ++.+++++|.|+||||||||+
T Consensus        33 iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           33 VPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             EESSSEEEEESSTTSSHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHH
Confidence            445669999999999999999

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.00  E-value=0.002  Score=46.11  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  5543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.99  E-value=0.0037  Score=45.84  Aligned_cols=19  Identities=32%  Similarity=0.328  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  |+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999  554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.98  E-value=0.0021  Score=46.30  Aligned_cols=20  Identities=20%  Similarity=0.301  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999  6554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.98  E-value=0.0021  Score=46.84  Aligned_cols=20  Identities=15%  Similarity=0.355  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999  6543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.98  E-value=0.0021  Score=46.41  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999  5543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0026  Score=47.22  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .-|+|+|++|||||||+  |...
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999  5554

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.96  E-value=0.0034  Score=46.58  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .-|+|+|++|||||||+  |+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999  6654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.96  E-value=0.002  Score=46.39  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999  5543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.96  E-value=0.0021  Score=50.39  Aligned_cols=21  Identities=14%  Similarity=0.015  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .|+|+||+||||+|+. .++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999 66553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.96  E-value=0.0019  Score=53.14  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~   98 (166)
                      -+|+|+|++|||||||+  |+..... .....+.|||...
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~   49 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRV   49 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEE
Confidence            48999999999999999  6654321 1233344566543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.95  E-value=0.0021  Score=47.16  Aligned_cols=20  Identities=30%  Similarity=0.286  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        20 ~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999  6543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.94  E-value=0.0022  Score=46.05  Aligned_cols=20  Identities=15%  Similarity=0.306  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999  5543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.94  E-value=0.0028  Score=55.75  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE  117 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~  117 (166)
                      .|+|+|++|+|||||+  |+.... .+....+.|||......  .+|..+.+++-..++.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~  293 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE  293 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence            5999999999999999  665432 24556677888765543  4777778887666543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.92  E-value=0.0025  Score=47.46  Aligned_cols=20  Identities=30%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999  6554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.92  E-value=0.0021  Score=49.79  Aligned_cols=23  Identities=17%  Similarity=0.098  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ...+|+|+|++||||||+. .++.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999 5554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.92  E-value=0.0022  Score=46.67  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.91  E-value=0.0024  Score=56.25  Aligned_cols=27  Identities=22%  Similarity=0.117  Sum_probs=21.8

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+..+.+++|+||+|+|||||+ .+..
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            35566779999999999999999 4443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.89  E-value=0.0026  Score=46.52  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+.++|.||+|+|||+|+  +....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999  54443

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.88  E-value=0.0024  Score=45.85  Aligned_cols=20  Identities=20%  Similarity=0.436  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999  6543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.87  E-value=0.0024  Score=46.98  Aligned_cols=20  Identities=15%  Similarity=0.235  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  6554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.87  E-value=0.0028  Score=46.15  Aligned_cols=20  Identities=30%  Similarity=0.298  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999  5543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.86  E-value=0.0023  Score=46.40  Aligned_cols=20  Identities=20%  Similarity=0.257  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.85  E-value=0.0025  Score=47.75  Aligned_cols=20  Identities=20%  Similarity=0.214  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  6554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.84  E-value=0.0026  Score=46.70  Aligned_cols=20  Identities=15%  Similarity=0.288  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  5543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.83  E-value=0.003  Score=45.56  Aligned_cols=16  Identities=19%  Similarity=0.254  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|++|||||||+
T Consensus         4 ki~ivG~~~~GKSsli   19 (169)
T 3q85_A            4 KVMLVGESGVGKSTLA   19 (169)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3899999999999999

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.81  E-value=0.0031  Score=51.64  Aligned_cols=19  Identities=21%  Similarity=0.006  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.|.||+|+||||++ .+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            899999999999999 5544

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.81  E-value=0.0023  Score=61.02  Aligned_cols=28  Identities=21%  Similarity=0.094  Sum_probs=22.1

Q ss_pred             CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088         45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +.|+|..+     +.+++++|.|+||||||||+
T Consensus        34 Lkni~v~i-----P~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           34 LKNIDVEI-----PRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             CCSEEEEE-----ETTSEEEEEESTTSSHHHHH
T ss_pred             CCceeeec-----cCCcEEEEECCCCCCHHHHH
Confidence            44555444     45569999999999999999

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.81  E-value=0.0025  Score=46.92  Aligned_cols=20  Identities=15%  Similarity=0.328  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999  6554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.78  E-value=0.0037  Score=47.29  Aligned_cols=17  Identities=24%  Similarity=0.090  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      +.++|.||+|+|||+|+
T Consensus        55 ~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            58999999999999999

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.78  E-value=0.0026  Score=46.13  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  ++.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            4899999999999999  553

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.77  E-value=0.0032  Score=51.31  Aligned_cols=23  Identities=17%  Similarity=0.011  Sum_probs=18.9

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++.+.|.||+|+|||+|+ .+..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHH
Confidence            4558999999999999999 4443

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.76  E-value=0.0031  Score=49.53  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++|+|.|+.||||||+.  |...++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            568999999999999999  444443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.74  E-value=0.0039  Score=46.85  Aligned_cols=17  Identities=29%  Similarity=0.200  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      +.++|.||+|+|||||+
T Consensus        46 ~~~ll~G~~G~GKT~l~   62 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIA   62 (250)
T ss_dssp             SEEEEECSTTSCHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            47999999999999999

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.74  E-value=0.0035  Score=46.20  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      -|+|+|++|||||||+  ++...
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            6899999999999999  65553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.72  E-value=0.0026  Score=48.76  Aligned_cols=21  Identities=19%  Similarity=0.053  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+|+|+|++||||||+. .++.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999 5554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.71  E-value=0.003  Score=46.99  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.71  E-value=0.0033  Score=47.97  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.++|+|++|||||||+  |+..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999  6655

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.70  E-value=0.0033  Score=51.79  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .|+|+|.+|||||||+  |+..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999  6654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.69  E-value=0.0034  Score=52.73  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-++|+|+||+||||++  |+..
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            568999999999999999  6653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0032  Score=45.90  Aligned_cols=20  Identities=30%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.67  E-value=0.0032  Score=46.64  Aligned_cols=20  Identities=15%  Similarity=0.301  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.67  E-value=0.0036  Score=45.99  Aligned_cols=20  Identities=30%  Similarity=0.340  Sum_probs=9.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.67  E-value=0.0032  Score=47.03  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.66  E-value=0.0054  Score=46.83  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.65  E-value=0.006  Score=52.42  Aligned_cols=54  Identities=20%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC--ccCCcceeecCHHHH
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRADM  115 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g--e~~G~~y~fvs~~~f  115 (166)
                      .-|+|+|.+|||||||+  |+.... ......+.||+.....  +.+|..+.++|.+.+
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~  233 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM  233 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence            47899999999999999  665432 2345566778766443  246767777776654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.65  E-value=0.0033  Score=45.92  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999  5543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.65  E-value=0.0041  Score=47.06  Aligned_cols=16  Identities=19%  Similarity=0.254  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|++|||||||+
T Consensus        25 ki~vvG~~~vGKSsLi   40 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLA   40 (195)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            6899999999999999

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.65  E-value=0.0034  Score=55.83  Aligned_cols=22  Identities=18%  Similarity=0.025  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..++|+||+|+|||||+ .+..
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            558999999999999999 5554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.65  E-value=0.0031  Score=46.31  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.65  E-value=0.004  Score=44.70  Aligned_cols=19  Identities=37%  Similarity=0.427  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999  5543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.64  E-value=0.004  Score=45.94  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999  6644

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.64  E-value=0.0041  Score=48.59  Aligned_cols=22  Identities=23%  Similarity=0.027  Sum_probs=18.0

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+.|.||+|+|||+|+ .+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            447999999999999999 4443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.64  E-value=0.0038  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.043  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+.|.||+|+|||||+ .+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.63  E-value=0.0034  Score=45.78  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.62  E-value=0.0041  Score=44.84  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5443

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.61  E-value=0.0047  Score=48.32  Aligned_cols=18  Identities=17%  Similarity=0.128  Sum_probs=16.2

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      ++.++|+||+||||||++
T Consensus        76 g~~~~i~g~TGsGKTt~~   93 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQV   93 (235)
T ss_dssp             CSEEEEECCTTSSHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhH
Confidence            458999999999999977

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.60  E-value=0.0043  Score=46.08  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ..-|+|+|++|||||||+  ++..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999  6554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.60  E-value=0.0045  Score=46.02  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      -|+|+|++|||||||+  ++...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999  66543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.59  E-value=0.0024  Score=51.29  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999  5544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.58  E-value=0.0034  Score=46.51  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.57  E-value=0.0041  Score=47.62  Aligned_cols=21  Identities=14%  Similarity=0.157  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ..|+|+|++|||||||+  ++..
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            37899999999999999  6655

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.57  E-value=0.0037  Score=45.91  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.56  E-value=0.0047  Score=46.89  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999  5554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.56  E-value=0.0038  Score=46.75  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.55  E-value=0.0059  Score=52.14  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE  101 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge  101 (166)
                      -++|+|.+|||||||+  |....  ......+.||+.|..|.
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~   43 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGV   43 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEE
Confidence            6899999999999999  55432  12234455677776664

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.55  E-value=0.0041  Score=46.63  Aligned_cols=20  Identities=40%  Similarity=0.534  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999  5544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.54  E-value=0.0036  Score=45.85  Aligned_cols=18  Identities=28%  Similarity=0.481  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChhhhc--cc
Q psy18088         62 CILHVDFAMFGKTSFL--FL   79 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li   79 (166)
                      -|+|+|++|||||||+  ++
T Consensus         8 ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            5899999999999999  65

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.54  E-value=0.0045  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=-0.022  Sum_probs=18.6

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++.+.|.||+|+|||+|+ .+..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            3457999999999999999 4443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.53  E-value=0.0045  Score=53.21  Aligned_cols=53  Identities=9%  Similarity=0.093  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADM  115 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f  115 (166)
                      .|+|+|.+|||||||+  |+..... .....+.+||....+.  .+|..+.+++-..+
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~   61 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI   61 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCC
Confidence            6999999999999999  6554321 2344556677654443  34556666655443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.53  E-value=0.0045  Score=46.34  Aligned_cols=20  Identities=25%  Similarity=0.375  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999  6544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.53  E-value=0.0035  Score=54.22  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCcceeecC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVT  111 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs  111 (166)
                      .|+|+|.+|||||||+  |+..... .....+.+||....+.+  ++..+..++
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liD   77 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLID   77 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEEC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEE
Confidence            7999999999999999  5544221 22334456665443332  344444444

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.51  E-value=0.0056  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=-0.041  Sum_probs=18.7

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+++++|+||+|+||||+. .++.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            3558999999999999999 4443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.50  E-value=0.0051  Score=46.69  Aligned_cols=20  Identities=25%  Similarity=0.301  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  6643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.49  E-value=0.0041  Score=46.07  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999  5543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.49  E-value=0.0042  Score=46.15  Aligned_cols=20  Identities=25%  Similarity=0.278  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.48  E-value=0.0044  Score=46.01  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.48  E-value=0.0055  Score=46.05  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.47  E-value=0.0042  Score=46.39  Aligned_cols=20  Identities=20%  Similarity=0.233  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999  6543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.45  E-value=0.0018  Score=49.63  Aligned_cols=20  Identities=30%  Similarity=0.316  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++.+
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  4544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.45  E-value=0.0051  Score=44.94  Aligned_cols=19  Identities=26%  Similarity=0.296  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  ++.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            4899999999999999  553

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0078  Score=44.36  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  5544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.44  E-value=0.0033  Score=45.97  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  6554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.43  E-value=0.0042  Score=46.41  Aligned_cols=20  Identities=20%  Similarity=0.303  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999  5543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.43  E-value=0.0043  Score=46.08  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999  5543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.42  E-value=0.0044  Score=46.17  Aligned_cols=20  Identities=20%  Similarity=0.266  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.41  E-value=0.0045  Score=49.54  Aligned_cols=20  Identities=20%  Similarity=0.224  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999  5543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.41  E-value=0.0054  Score=52.19  Aligned_cols=27  Identities=15%  Similarity=-0.002  Sum_probs=22.1

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc--cccc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |-+..++++.|.||+|||||||+  ++..
T Consensus        56 GGi~~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           56 GGYPRGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45667779999999999999999  4443

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.41  E-value=0.0049  Score=48.08  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~   98 (166)
                      |+++|+|=|+-||||||+. ++. .+..  +.. ...||.|.
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~-v~~~~eP~   39 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYD-VIMTREPG   39 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTT--TSC-EEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHC--CCC-EEEeeCCC
Confidence            4679999999999999999 444 3432  222 24567774

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.40  E-value=0.0049  Score=53.04  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVT  111 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs  111 (166)
                      .|+|+|.++||||||+  |+.... .+....+.+||....+.  .+|..+..+|
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~D   55 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVD   55 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEE
Confidence            6899999999999999  665432 23445566777665553  3555554444

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.0047  Score=46.20  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.38  E-value=0.0044  Score=46.65  Aligned_cols=19  Identities=26%  Similarity=0.385  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  |..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999  554

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.37  E-value=0.0068  Score=46.77  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999  6554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.37  E-value=0.0047  Score=46.62  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999  6543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.36  E-value=0.0049  Score=45.69  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++.+
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999  6644

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.34  E-value=0.0048  Score=46.69  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999  5543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.33  E-value=0.0058  Score=46.10  Aligned_cols=18  Identities=17%  Similarity=0.296  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCChhhhc--cc
Q psy18088         62 CILHVDFAMFGKTSFL--FL   79 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li   79 (166)
                      -|+|+|++|||||||+  ++
T Consensus         8 kv~lvG~~~vGKSsL~~~~~   27 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFA   27 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            4899999999999999  55

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.32  E-value=0.0056  Score=46.00  Aligned_cols=20  Identities=35%  Similarity=0.369  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5999999999999999  5543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.0044  Score=46.17  Aligned_cols=20  Identities=35%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5899999999999999  6554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.32  E-value=0.0041  Score=50.76  Aligned_cols=21  Identities=24%  Similarity=0.156  Sum_probs=17.6

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +..+.|.||+|+|||||+ .+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~   58 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAG   58 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            347999999999999999 443

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.32  E-value=0.0058  Score=51.25  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-++|.|+||+||||++  |+..
T Consensus       147 g~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            568999999999999999  6653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.31  E-value=0.0047  Score=46.48  Aligned_cols=20  Identities=25%  Similarity=0.482  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999  6554

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.31  E-value=0.0051  Score=45.81  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999  6543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.31  E-value=0.0054  Score=45.86  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.30  E-value=0.0061  Score=44.45  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.29  E-value=0.0057  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++.++|.||+|+|||||+  +...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999  5443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.29  E-value=0.0052  Score=46.19  Aligned_cols=20  Identities=35%  Similarity=0.448  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999  6544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.28  E-value=0.0039  Score=51.38  Aligned_cols=29  Identities=24%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             CCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         50 SGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        50 ~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++.++++  . ++|.||+|+||||++ .+..
T Consensus        39 ~~i~~g~~~--~-~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           39 KFVDEGKLP--H-LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             HHHHTTCCC--C-EEEECSSSSSHHHHHHHHHH
T ss_pred             HHHhcCCCc--e-EEEECCCCCCHHHHHHHHHH
Confidence            344555531  1 899999999999999 4443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.28  E-value=0.0052  Score=46.18  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.27  E-value=0.0053  Score=45.75  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999  5544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.26  E-value=0.0032  Score=53.73  Aligned_cols=16  Identities=19%  Similarity=0.366  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      .++|+|++|||||||+
T Consensus         3 ~v~IVG~pnvGKSTL~   18 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLF   18 (368)
T ss_dssp             SEEEECCSSSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3889999999999999

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.24  E-value=0.0039  Score=46.50  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=4.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999  5544

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.22  E-value=0.0061  Score=46.21  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999  5543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.22  E-value=0.0048  Score=45.59  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999  6544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.19  E-value=0.007  Score=50.50  Aligned_cols=18  Identities=22%  Similarity=0.132  Sum_probs=16.7

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +..++|+|++|+|||||+
T Consensus        56 ~~~i~i~G~~g~GKSTl~   73 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFL   73 (341)
T ss_dssp             SEEEEEEECTTSCHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHH
Confidence            458999999999999999

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.17  E-value=0.0061  Score=46.59  Aligned_cols=20  Identities=35%  Similarity=0.340  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999  5543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.14  E-value=0.0062  Score=48.03  Aligned_cols=20  Identities=30%  Similarity=0.223  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999  5543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.13  E-value=0.0062  Score=45.10  Aligned_cols=20  Identities=30%  Similarity=0.318  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        24 ~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5999999999999999  5443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.13  E-value=0.0066  Score=44.08  Aligned_cols=20  Identities=10%  Similarity=0.099  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|.||+|+|||+++ .+..
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999 5543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.13  E-value=0.0069  Score=48.59  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|.||+|+|||+++ .+..
T Consensus        49 ~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            7999999999999999 4443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.12  E-value=0.0083  Score=49.27  Aligned_cols=21  Identities=19%  Similarity=-0.005  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .++|.||+|+|||||+  +....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999999  44443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.12  E-value=0.006  Score=46.20  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.11  E-value=0.0086  Score=54.26  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      .|+|+|++++|||||+  |+.... .|  .++.|||....|
T Consensus        40 ~VaivG~pnvGKStLiN~L~g~~~-~~--~~~~tt~~~T~g   77 (592)
T 1f5n_A           40 VVAIVGLYRTGKSYLMNKLAGKKK-GF--SLGSTVQSHTKG   77 (592)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSS-CS--CCCCSSSCCCCS
T ss_pred             EEEEECCCCCCHHHHHHhHcCCCC-cc--ccCCCCCCceeE
Confidence            7899999999999999  655432 12  455666555443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.10  E-value=0.0062  Score=45.29  Aligned_cols=20  Identities=25%  Similarity=0.291  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.10  E-value=0.006  Score=46.64  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.09  E-value=0.0071  Score=48.51  Aligned_cols=20  Identities=20%  Similarity=0.404  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|+|||||+  |...
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999  5544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.08  E-value=0.0075  Score=48.77  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGP   97 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p   97 (166)
                      .++|+|.+|+|||||+  |...... -...++.||+..
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~  137 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGI  137 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTCC-----------CCS
T ss_pred             heEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccce
Confidence            6899999999999999  5544321 234556677654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.07  E-value=0.0055  Score=48.89  Aligned_cols=20  Identities=20%  Similarity=0.286  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|+|||||+  |+..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999  6554

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=95.07  E-value=0.0026  Score=56.06  Aligned_cols=49  Identities=22%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVT  111 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs  111 (166)
                      -|+|+|++++|||||+  |+.... .+....+.|||.+..+.  ++|..+.+++
T Consensus       245 kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~D  297 (482)
T 1xzp_A          245 RMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVD  297 (482)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEE
T ss_pred             EEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEE
Confidence            6999999999999999  655432 24455667888776553  3555544443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.00  E-value=0.0084  Score=44.61  Aligned_cols=16  Identities=25%  Similarity=0.112  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      .++|.||+|+|||+|+
T Consensus        40 ~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A           40 HLLFSGPPGTGKTATA   55 (226)
T ss_dssp             CEEEECSTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            4899999999999999

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.98  E-value=0.011  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.124  Sum_probs=20.1

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |-+..+.++.|.||+|+|||||+
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla  139 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLS  139 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHH
Confidence            44566779999999999999999

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.97  E-value=0.0076  Score=52.60  Aligned_cols=19  Identities=26%  Similarity=0.128  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+++++++||+||||||++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~  114 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTA  114 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3679999999999999999

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.95  E-value=0.0097  Score=50.14  Aligned_cols=23  Identities=22%  Similarity=0.017  Sum_probs=20.3

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |-+..++++.|.||+|+|||||+
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLa   78 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVA   78 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHH
Confidence            45667779999999999999998

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.94  E-value=0.0058  Score=54.82  Aligned_cols=21  Identities=14%  Similarity=0.074  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.++|+||+|+|||||+ .+.+
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHhc
Confidence            48999999999999999 5544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.94  E-value=0.0085  Score=48.79  Aligned_cols=22  Identities=9%  Similarity=-0.289  Sum_probs=17.9

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+.|.||+|+|||+|+ .++.
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            457888899999999999 4443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.92  E-value=0.011  Score=48.23  Aligned_cols=37  Identities=11%  Similarity=0.118  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~   98 (166)
                      -.++|+|.+|+|||||+  |+.... .-....+.|||.+.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~  159 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ  159 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred             ceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeE
Confidence            36899999999999999  554432 23345566777553

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.91  E-value=0.0087  Score=48.03  Aligned_cols=18  Identities=17%  Similarity=0.001  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +..++|.||+|+|||+|+
T Consensus        67 ~~~vll~G~~GtGKT~la   84 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVA   84 (309)
T ss_dssp             CCEEEEEECTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            347999999999999999

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.90  E-value=0.011  Score=45.20  Aligned_cols=22  Identities=23%  Similarity=0.108  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +++++|.||.|+||||++  ++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            558999999999999998  5543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.90  E-value=0.0075  Score=50.85  Aligned_cols=15  Identities=20%  Similarity=0.454  Sum_probs=14.5

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      |+|+|++|+|||||+
T Consensus        40 I~vvG~~g~GKSTLl   54 (361)
T 2qag_A           40 LMVVGESGLGKSTLI   54 (361)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEcCCCCCHHHHH
Confidence            799999999999999

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.86  E-value=0.009  Score=44.80  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5999999999999998  5443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.0029  Score=54.28  Aligned_cols=50  Identities=22%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRA  113 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~  113 (166)
                      -|+|+|.+.||||||+  |....+  .....+.||+.|..|.  .+|..+.+++-+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~~~~i~l~D~p  127 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYKGAKIQMLDLP  127 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEETTEEEEEEECG
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeCCcEEEEEeCC
Confidence            6999999999999999  655433  2345567888887774  355555555433

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.85  E-value=0.012  Score=49.15  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=18.4

Q ss_pred             cEEEEEcCCCCChhhhc--ccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ..++|+|++|||||||+  |....
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999  55543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.84  E-value=0.013  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+|+|.|++||||||+. .+..
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~  394 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILAT  394 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHH
Confidence            568999999999999999 5544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.0084  Score=45.98  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999  5543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.83  E-value=0.011  Score=49.81  Aligned_cols=17  Identities=18%  Similarity=0.165  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+||+|+|||||+
T Consensus        26 gl~vi~G~NGaGKT~il   42 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIF   42 (371)
T ss_dssp             EEEEEEECTTSSHHHHH
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            48999999999999999

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.82  E-value=0.0081  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=18.7

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+.+.|.||+|+|||+|+ .+..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            3458999999999999999 4443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.81  E-value=0.0084  Score=45.95  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.81  E-value=0.01  Score=47.95  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .|+|+|++|||||||+  |+..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHHCC
Confidence            6999999999999999  6554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.79  E-value=0.0082  Score=45.34  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|+|||||+  ++..
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999  5543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.77  E-value=0.0083  Score=51.29  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++|+||+||||||+. +++.
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            5999999999999999 4443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.77  E-value=0.0085  Score=45.30  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            5899999999999999  5543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.76  E-value=0.0024  Score=55.99  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC--ccCCcceeecCHHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRADME  116 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g--e~~G~~y~fvs~~~f~  116 (166)
                      .|+|+|++|+|||||+  |+.... .+....+.|||.....  .++|..+.+++...+.
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~  283 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR  283 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence            5999999999999999  655422 1233334455543222  2467777777766653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.72  E-value=0.0094  Score=43.22  Aligned_cols=20  Identities=5%  Similarity=-0.071  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|.||+|+|||+++ .+..
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCC
T ss_pred             cEEEECCCCccHHHHHHHHHH
Confidence            6889999999999999 5554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.67  E-value=0.0092  Score=47.53  Aligned_cols=17  Identities=29%  Similarity=0.264  Sum_probs=15.6

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.|.||+|+|||+|+
T Consensus        51 ~~vll~G~~GtGKT~la   67 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIA   67 (310)
T ss_dssp             CCEEEECCTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            46889999999999999

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=94.67  E-value=0.0086  Score=51.36  Aligned_cols=36  Identities=22%  Similarity=0.037  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      |+|+|.++||||||+  |....  ......+.||+.|..|
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g   40 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVG   40 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred             EEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceE
Confidence            799999999999999  55442  1222334466655544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.67  E-value=0.0096  Score=48.64  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++.++|.||+|+|||||+  +....
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            457999999999999999  54443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.67  E-value=0.011  Score=44.83  Aligned_cols=19  Identities=26%  Similarity=0.296  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  ++.
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999  553

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.64  E-value=0.012  Score=45.81  Aligned_cols=19  Identities=16%  Similarity=0.263  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  ++.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999  553

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.62  E-value=0.014  Score=44.91  Aligned_cols=21  Identities=24%  Similarity=0.089  Sum_probs=18.3

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.+++|.|++|+|||+|+
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~   47 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFA   47 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHH
Confidence            445569999999999999998

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.62  E-value=0.011  Score=48.85  Aligned_cols=18  Identities=28%  Similarity=0.132  Sum_probs=16.7

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +++++++||+|+||||++
T Consensus        98 ~~vi~i~G~~G~GKTT~~  115 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTA  115 (297)
T ss_dssp             SEEEEEECSSCSSTTHHH
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            568999999999999999

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.62  E-value=0.011  Score=53.14  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.+|+|.|+|||||||+. .++.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHH
Confidence            3568999999999999999 5543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.60  E-value=0.0093  Score=49.61  Aligned_cols=21  Identities=29%  Similarity=0.178  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.++|.||+|+|||+++ .+..
T Consensus        52 ~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999 5554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.60  E-value=0.011  Score=44.40  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|++|||||||+  +..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999  554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.58  E-value=0.013  Score=48.19  Aligned_cols=18  Identities=22%  Similarity=0.095  Sum_probs=16.7

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      ++.+.|.||+|+|||+|+
T Consensus        70 ~~~vLl~GppGtGKT~la   87 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIA   87 (368)
T ss_dssp             TCEEEEEESTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            458999999999999999

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.57  E-value=0.012  Score=48.41  Aligned_cols=18  Identities=17%  Similarity=0.050  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      ++.++|.||+|+|||+|+
T Consensus       152 ~~~lll~G~~GtGKT~La  169 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLL  169 (308)
T ss_dssp             CCEEEEECSTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            568999999999999999

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.59  E-value=0.0062  Score=45.85  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4899999999999999  5543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.56  E-value=0.014  Score=48.16  Aligned_cols=23  Identities=22%  Similarity=0.024  Sum_probs=19.7

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |-+..+.++.|.||+|+|||||+
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la  124 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLC  124 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHhHHH
Confidence            34556679999999999999999

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.54  E-value=0.011  Score=53.86  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=19.3

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++.+|+|+|++||||||+. .++.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4668999999999999999 4443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.54  E-value=0.0089  Score=51.66  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..++|.||+|+|||||+ .+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999 4443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.51  E-value=0.013  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=-0.021  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|..++|+||||+|||||+ ++..
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar  196 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQ  196 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHH
Confidence            3559999999999999999 6554

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.47  E-value=0.0049  Score=48.69  Aligned_cols=19  Identities=26%  Similarity=0.132  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .+.|.||+|+|||+|+ .+.
T Consensus        46 ~vll~G~~GtGKT~la~~la   65 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVA   65 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            4789999999999999 444

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.45  E-value=0.016  Score=46.68  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.++|.||.|+|||||+  +...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            48999999999999999  5544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.39  E-value=0.014  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.054  Sum_probs=18.3

Q ss_pred             CCcEEEEEcCCCCChhhhc-ccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .++-+.|.||+|+|||+|+ .+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHH
Confidence            3468999999999999999 443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.38  E-value=0.012  Score=46.91  Aligned_cols=20  Identities=25%  Similarity=0.282  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|+|||||+  |+..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999  6544

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.36  E-value=0.012  Score=52.45  Aligned_cols=23  Identities=9%  Similarity=-0.107  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+..|+|+|+||||||||. .++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEecccCCCCHHHHHHHHHH
Confidence            4568999999999999999 4443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.35  E-value=0.014  Score=46.83  Aligned_cols=20  Identities=25%  Similarity=0.260  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  |...
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999  6543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.32  E-value=0.013  Score=50.90  Aligned_cols=19  Identities=21%  Similarity=-0.029  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+++++|+||+||||||+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~  115 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTA  115 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3568999999999999999

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.31  E-value=0.018  Score=48.46  Aligned_cols=52  Identities=21%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CC-cceeecCHHHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DG-KAYHFVTRADM  115 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G-~~y~fvs~~~f  115 (166)
                      -|+|+|.++||||||+  |....+.  ....+.||..|..+.+  ++ ..+.+++.+-+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~  216 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGL  216 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCC
Confidence            3889999999999999  6555331  1223356766665532  32 45666666554

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.29  E-value=0.018  Score=47.28  Aligned_cols=22  Identities=18%  Similarity=0.079  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++.+.|.||+|+|||||+  +...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999  4443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.26  E-value=0.016  Score=46.66  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.++|.||.|+|||||+  +...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            48999999999999999  5544

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.19  E-value=0.014  Score=49.00  Aligned_cols=21  Identities=14%  Similarity=-0.070  Sum_probs=17.2

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .-++|+||||+||||++  ++..
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            35889999999999999  4443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.18  E-value=0.019  Score=46.97  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=19.8

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |-+..+.++.|.||+|+|||+|+
T Consensus        93 GGl~~g~i~~i~G~~gsGKT~la  115 (322)
T 2i1q_A           93 GGLESQSVTEFAGVFGSGKTQIM  115 (322)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHH
Confidence            34556779999999999999999

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.16  E-value=0.019  Score=46.82  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ..+.|.||+|+|||+|+ .+.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia   76 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIIS   76 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            36899999999999999 444

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.15  E-value=0.013  Score=46.68  Aligned_cols=20  Identities=35%  Similarity=0.301  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  |+..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHHCC
Confidence            6999999999999999  6554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.15  E-value=0.021  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .+++|+++||+||||||+.  |...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            3679999999999999999  5543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.14  E-value=0.021  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=18.2

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.+++|.|++|+|||||+
T Consensus       200 l~~G~liiI~G~pG~GKTtl~  220 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFA  220 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHH
Confidence            344559999999999999999

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.13  E-value=0.016  Score=44.84  Aligned_cols=21  Identities=14%  Similarity=-0.241  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+|+|.||.||||||+. .++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            48999999999999999 5544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.13  E-value=0.022  Score=46.87  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=18.1

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.+++|.|++|+|||||+
T Consensus        65 l~~G~l~li~G~pG~GKTtl~   85 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFA   85 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHH
Confidence            344559999999999999999

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.12  E-value=0.019  Score=48.03  Aligned_cols=22  Identities=9%  Similarity=-0.040  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ...|+|+|++|+|||||+  |...
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            448999999999999999  5543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.08  E-value=0.012  Score=45.46  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCC
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~   98 (166)
                      +|+|=|+-||||||.. ++.. +.. -+..+ .+||.|.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v-~~treP~   38 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPG   38 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH-TTCCE-EEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCcE-EEEECCC
Confidence            7899999999999999 5544 332 22222 4567774

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.03  E-value=0.026  Score=48.69  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD  114 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~  114 (166)
                      ..-++|+|.+|+|||||+  ++.... .+....+.||+......  .+|..+.++|-+.
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G  252 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG  252 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGG
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCC
Confidence            446899999999999999  654432 34455667777765443  4666677776554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.02  E-value=0.018  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=-0.044  Sum_probs=18.9

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..+.+.|.||+|+|||+|+ .+..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999 4443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.01  E-value=0.018  Score=47.20  Aligned_cols=22  Identities=23%  Similarity=0.069  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+-+.|.||+|+|||+|+ .+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            457999999999999999 4443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.01  E-value=0.021  Score=50.54  Aligned_cols=20  Identities=25%  Similarity=0.177  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -++|+||+|+|||||+ .+..
T Consensus        66 GvLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            4999999999999999 5554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.00  E-value=0.019  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.048  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++-+.|+||+|+|||+|+ .+..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999 5544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.98  E-value=0.015  Score=48.48  Aligned_cols=20  Identities=30%  Similarity=0.167  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|.||+|+|||+|+ .+..
T Consensus        74 ~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999 4443

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=93.98  E-value=0.017  Score=46.55  Aligned_cols=20  Identities=20%  Similarity=0.195  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  |+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999  6544

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=93.95  E-value=0.017  Score=45.19  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||+|+  ++.+
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCcCHHHHHHHHHhC
Confidence            889999999999999  5543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.82  E-value=0.019  Score=49.91  Aligned_cols=22  Identities=32%  Similarity=0.232  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++.|+|+|++||||||+.  |...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999  5543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.76  E-value=0.02  Score=45.20  Aligned_cols=17  Identities=18%  Similarity=0.038  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.|.||+|+|||+|+
T Consensus        30 ~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIA   46 (265)
T ss_dssp             SCEEEECCTTSCHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            36899999999999999

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.72  E-value=0.018  Score=46.73  Aligned_cols=15  Identities=33%  Similarity=0.253  Sum_probs=14.6

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      +.|.||+|+||||++
T Consensus        61 ~ll~G~~G~GKT~la   75 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTI   75 (353)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            899999999999999

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.70  E-value=0.017  Score=46.50  Aligned_cols=17  Identities=24%  Similarity=0.264  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      +.++|.||+|+|||+|+
T Consensus        39 ~~vll~G~~GtGKT~la   55 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLA   55 (324)
T ss_dssp             CCCEEECCTTCCCHHHH
T ss_pred             CcEEEECCCCCCHHHHH
Confidence            36899999999999999

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.70  E-value=0.028  Score=49.32  Aligned_cols=19  Identities=16%  Similarity=0.008  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..++++|.||.|+|||||+
T Consensus       146 ~~~~v~I~G~~GiGKTtLa  164 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLA  164 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHH
Confidence            3579999999999999999

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=93.68  E-value=0.023  Score=50.38  Aligned_cols=19  Identities=26%  Similarity=0.172  Sum_probs=17.0

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      .+.+|+++|++||||||+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia   52 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYIS   52 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH
Confidence            3458999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	5e-12
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	5e-09
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	7e-09
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	1e-07
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	1e-06

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 5e-12
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           G+       +    DRF + + HTTR P+  E +GK Y+FV+   M + I+  E+LE+  
Sbjct: 15  GRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS 74

Query: 130 FAANLYGTSQCGRQNGRNY 148
               +YGT     +     
Sbjct: 75  HEDAMYGTKLETIRKIHEQ 93

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (121), Expect = 5e-09
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 84  DRFGFSVSHTTRGPRPGEVDGKAYHF-VTRADMEERIAAGEFLEHAEFAANLYGTSQC 140
           D+FG  V HTTR  R  E+DG+ YHF  +R  ME+ I A +F+E  ++ ++LYGTS  
Sbjct: 32  DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQ 89

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 7e-09
 Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 72  GKTSF---LFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
           GK+S    L     L     SVSHTTR PRPGEV G+ Y FV   + +E I+   FLEHA
Sbjct: 14  GKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 73

Query: 129 EFAANLYGTSQCGRQN 144
           E   N YGTS+   + 
Sbjct: 74  EVFGNYYGTSREAIEQ 89

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 2/79 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L    +     FGFSVSHTTR PRPGE DGK Y+FVTR  M+  IAAG+F+EHAE
Sbjct: 12  GKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 71

Query: 130 FAANLYGTSQCGRQNGRNY 148
           F+ NLYGTS+   +  +  
Sbjct: 72  FSGNLYGTSKEAVRAVQAM 90

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 72  GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
           GK++ L        D FGFSVS TTR PR GEV+GK Y+FV+  + +  I   EF+E A+
Sbjct: 13  GKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72

Query: 130 FAANLYGTSQC 140
           F+ N YG++  
Sbjct: 73  FSGNYYGSTVA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.96
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.95
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.93
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.91
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.9
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.9
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.33
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.31
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.27
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.27
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.27
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.26
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.26
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.24
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.24
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.23
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.19
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.17
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.12
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.09
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.09
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.93
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.86
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.96
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.82
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.78
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.73
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.68
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.67
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.6
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.51
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.41
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.4
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.39
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.39
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.39
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.38
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.33
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.31
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.25
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.24
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.23
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.19
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.19
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.12
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.12
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.1
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.1
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.05
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.99
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.98
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.95
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.93
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.92
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.84
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.83
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.83
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.76
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.71
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.69
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.69
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.68
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.68
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.67
d1okkd2	207	GTPase domain of the signal recognition particle r	96.66
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.66
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.66
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.64
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.61
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.59
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.59
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.55
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.55
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.49
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.49
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.43
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.41
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.41
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.36
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.35
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.23
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.2
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.19
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.18
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.17
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.14
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.13
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.12
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.12
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.1
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.06
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.05
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.02
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.01
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.99
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.95
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.89
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.85
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.84
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.8
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.8
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.79
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.77
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.76
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.74
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.73
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.7
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.69
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.68
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.64
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.63
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.61
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.59
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.57
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.57
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.57
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.56
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.55
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.54
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.53
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.45
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.43
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.42
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.41
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.35
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.35
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.35
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.34
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.32
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.27
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.22
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.21
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.21
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.18
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.16
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.16
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.15
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.09
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.05
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.99
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.83
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.81
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.75
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.7
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.65
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.65
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.52
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.47
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.45
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.37
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.16
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.09
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.04
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.92
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.71
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.58
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.55
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.41
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.16
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.95
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.82
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.73
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.64
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.6
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.49
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.41
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.28
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.25
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.23
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.1
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.1
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.91
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.68
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.06
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.83
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	90.2
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.16
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.57
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	89.54
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.41
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.22
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	88.75
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.74
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.66
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.11
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.45
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.32
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.12
d1tuea_	205	Replication protein E1 helicase domain {Human papi	87.12
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.12
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.46
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.51
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	85.38
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.37
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.2
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.81
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.58
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	83.86
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	83.5
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	83.25
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.0
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.85
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.44
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	80.54
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.2
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.06

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-30  Score=198.49  Aligned_cols=108  Identities=27%  Similarity=0.386  Sum_probs=97.8

Q ss_pred             cCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY  135 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~y  135 (166)
                      ++.++|+|+||||||||||+  |++.+|+.|..+++||||+||+||.+|++|+|+|.++|..++++|.|+||+++.|++|
T Consensus         1 ~m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~Y   80 (178)
T d1kgda_           1 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY   80 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccce
Confidence            46789999999999999999  8889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        136 GTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       136 G~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      |++.++++++++     +++++.++++.++..++.
T Consensus        81 Gt~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~  115 (178)
T d1kgda_          81 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFA  115 (178)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTC
T ss_pred             eeeeecccchhccCceEEeccchhhhhhhhccccc
Confidence            999999999887     577889999999876653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.5e-30  Score=201.70  Aligned_cols=106  Identities=36%  Similarity=0.480  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccccc-ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLD-RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG  136 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~-~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG  136 (166)
                      |++|+|+||||||||||.  |+..+|. .|..+++||||+||+||++|++|+|+|.++|++++++|.|+||+++.||+||
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            669999999999999999  8888885 5899999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      ++.++++++++     +++++.++++.++..+|.
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~  115 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH  115 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTT
T ss_pred             cccchHHHHHhcCCceeecCcHHHHHHHHhhhcc
Confidence            99999999887     678899999999887764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-27  Score=181.88  Aligned_cols=105  Identities=33%  Similarity=0.537  Sum_probs=97.6

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS  138 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~  138 (166)
                      |+|+|+|||||||+||+  |++.+|..|..+++||||+|++||.+|++|+|+|.++|..+++++.|++|+++.|++||++
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            57999999999999999  8888998999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        139 QCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       139 ~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      .+++..++.     ++++++++++.++..+++
T Consensus        82 ~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~  113 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPEL  113 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG
T ss_pred             hhhHHHHhcCCCeEEecchHHHHHHHHHhhcc
Confidence            999998877     566789999988887764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-25  Score=174.46  Aligned_cols=104  Identities=42%  Similarity=0.622  Sum_probs=96.8

Q ss_pred             cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS  138 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~  138 (166)
                      |+|+|+|||||||+||+  |++.+|..|..+++||||+|++||.+|++|+|+|.++|..+++.|.|++|+++.+++||++
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            46999999999999999  8888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088        139 QCGRQNGRN-----YLIFNTLAAKCLPTVFP  164 (166)
Q Consensus       139 ~~~I~~ile-----~v~L~~~~~~~l~~~~p  164 (166)
                      .+++++++.     ++..+..++..|+..++
T Consensus        81 ~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~  111 (190)
T d1lvga_          81 KEAVRAVQAMNRICVLDVDLQGVRSIKKTDL  111 (190)
T ss_dssp             HHHHHHHHHTTCEEEEECCHHHHHHHTTSSC
T ss_pred             cchhhhhhcCCCceeecchHhhhhhhhhccc
Confidence            999999887     46777888888887765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=4e-25  Score=168.92  Aligned_cols=105  Identities=30%  Similarity=0.481  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhh--c
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANL--Y  135 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~--y  135 (166)
                      |++|+|+||||||||||+  |++.+|. +..+++||||+||+||.+|++|+|++.++|+.+..++.|++|+.+.+|+  |
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            679999999999999999  7777884 8899999999999999999999999999999999999999999999984  6


Q ss_pred             CCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        136 GTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       136 G~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      |++..++...+.     +++++.++++.++..+|.
T Consensus        81 g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~  115 (182)
T d1znwa1          81 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE  115 (182)
T ss_dssp             EEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT
T ss_pred             ccccchhhhhhhcCCccccccccchhhhhhhcCcc
Confidence            999999988887     467888888888777664

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.6e-25  Score=174.56  Aligned_cols=110  Identities=32%  Similarity=0.466  Sum_probs=100.9

Q ss_pred             ccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeec-CHHHHHHHHHcCCccceee
Q psy18088         53 RSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAE  129 (166)
Q Consensus        53 ~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fv-s~~~f~~~~~~~~fle~~~  129 (166)
                      .+.++++.|+|+|+||+   |+|+.  |+..+|+.|..+++||||+||+||.+|++|+|+ +.++|+.++++|.|+||++
T Consensus         2 ~~~~~~~~Rpivi~Gp~---K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~   78 (199)
T d1kjwa2           2 TQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQ   78 (199)
T ss_dssp             EEEECCSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEE
T ss_pred             ccccCCCCCCEEEECcC---HHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeee
Confidence            45678889999999994   99999  999999999999999999999999999999999 6788999999999999999


Q ss_pred             ehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088        130 FAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF  165 (166)
Q Consensus       130 ~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~  165 (166)
                      +.||+||++.++++++++     +++++.++++.|+..++.
T Consensus        79 ~~g~~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~  119 (199)
T d1kjwa2          79 YNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLH  119 (199)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCC
T ss_pred             ecCCccceeeeEEEehhcCCCcccccccchHHhhhhhhccc
Confidence            999999999999999887     677889999999776654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.1e-13  Score=109.47  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      ++++.+|++.|.     +.++.++||.|++||     +++|+||||||||||+ ++.++..            |.+|+  
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge-----~~~iiG~sGsGKSTLl~~i~Gl~~------------p~sG~I~   63 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ-----IYGVIGASGAGKSTLIRCVNLLER------------PTEGSVL   63 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSC-----EEEEEESTTSSHHHHHHHHTTSSC------------CSEEEEE
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCcc------------ccCCceE
Confidence            456778887774     467889999999999     8999999999999999 8888775            88897  


Q ss_pred             cCCcceeecCHHHHHHH-------HHcCCccceeeehhh------hcCCChHH----HHHHHhhccCCh
Q psy18088        102 VDGKAYHFVTRADMEER-------IAAGEFLEHAEFAAN------LYGTSQCG----RQNGRNYLIFNT  153 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~-------~~~~~fle~~~~~gn------~yG~~~~~----I~~ile~v~L~~  153 (166)
                      ++|++..-.+..++..+       +|...+++..++.+|      .+|.+.++    +.++++.++|.+
T Consensus        64 ~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~  132 (240)
T d3dhwc1          64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD  132 (240)
T ss_dssp             ETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT
T ss_pred             EcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence            48888765566554432       455566777788777      25666543    456666777754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.31  E-value=3.4e-13  Score=108.97  Aligned_cols=108  Identities=13%  Similarity=0.189  Sum_probs=84.9

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--  102 (166)
                      |-+++++|+|.+.   ..++.++|+.|++|+     +++|+||||||||||+ ++.++..            |..|++  
T Consensus        15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i   77 (255)
T d2hyda1          15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGE-----TVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILI   77 (255)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEE
T ss_pred             CEEEEEEEEEEeCCCCCcceeceEEEEcCCC-----EEEEECCCCCcHHHHHHHHHhcCC------------cccccccc
Confidence            4588899998873   457889999999888     8999999999999999 8888776            888874  


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCCh
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFNT  153 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~~  153 (166)
                      +|.+....+...+.+.   +.+..++..+++.+| .+|.+   .+++.++++.+.+.+
T Consensus        78 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~  135 (255)
T d2hyda1          78 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD  135 (255)
T ss_dssp             TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHH
T ss_pred             CCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHH
Confidence            8888777777777663   345667778899999 47753   466777777666543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.1e-13  Score=110.75  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      ++.+|++.+. ..++.++||.|++||     +++|+||||||||||+ ++.++-.            |.+|++  +|++.
T Consensus         2 ev~nv~k~yg~~~~l~~isl~i~~Ge-----i~~liGpsGsGKSTLl~~i~Gl~~------------p~sG~I~i~g~~i   64 (232)
T d2awna2           2 QLQNVTKAWGEVVVSKDINLDIHEGE-----FVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEKRM   64 (232)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEESSSCC
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCChHHHHHHHHhcCCC------------CCCCEEEECCEEC
Confidence            4668888884 667889999999998     8999999999999999 8887665            777763  66543


Q ss_pred             eecCHHH--HHHHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCCh
Q psy18088        108 HFVTRAD--MEERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNT  153 (166)
Q Consensus       108 ~fvs~~~--f~~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~  153 (166)
                      ...+..+  +..++|...+.++.++.+|      .+|.+++    .++++++.++|.+
T Consensus        65 ~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~  122 (232)
T d2awna2          65 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH  122 (232)
T ss_dssp             TTSCGGGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC----
T ss_pred             CCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh
Confidence            2222211  2223455566677777666      3455543    3566666777764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.27  E-value=7.4e-14  Score=111.47  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcc
Q psy18088         30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKA  106 (166)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~  106 (166)
                      ++++++|++.+...+++++||.|++||     +++|+||||||||||+ ++.++-.            |.+|+  ++|++
T Consensus         1 mi~v~nlsk~y~~~aL~~vs~~i~~Ge-----~~~liGpsGaGKSTll~~l~Gl~~------------p~sG~I~~~G~~   63 (229)
T d3d31a2           1 MIEIESLSRKWKNFSLDNLSLKVESGE-----YFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKD   63 (229)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEECTTC-----EEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEE
T ss_pred             CEEEEEEEEEeCCEEEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHhcCcC------------CCCCEEEEccEe
Confidence            456789999987667889999999999     8999999999999999 8888765            88887  48877


Q ss_pred             eeecCHHH--HHHHHHcCCccceeeehhhh------cCCC-hHHHHHHHhhccCCh
Q psy18088        107 YHFVTRAD--MEERIAAGEFLEHAEFAANL------YGTS-QCGRQNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~~--f~~~~~~~~fle~~~~~gn~------yG~~-~~~I~~ile~v~L~~  153 (166)
                      ....+...  +..++|...+.++.++.+|.      ++.+ .+.+.++++.+++.+
T Consensus        64 i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~  119 (229)
T d3d31a2          64 VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH  119 (229)
T ss_dssp             CTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT
T ss_pred             ccccchhHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchh
Confidence            54434331  22235666777888888872      3433 346777888777753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=9.4e-13  Score=104.98  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      ++++.+|++.|.     +.++.++||.|++||     +++|+||||||||||+ ++.++..            |.+|+  
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge-----~~~iiG~sGsGKSTLl~~i~gl~~------------p~sG~I~   63 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGE-----FVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVY   63 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEE
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCC-----EEEEECCCCCCcchhhHhccCCCC------------CCcceeE
Confidence            356778887774     457889999999999     8999999999999999 8888775            88898  


Q ss_pred             cCCcceeecCHHHHHHH--------HHcCCccceeeehhh
Q psy18088        102 VDGKAYHFVTRADMEER--------IAAGEFLEHAEFAAN  133 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~--------~~~~~fle~~~~~gn  133 (166)
                      ++|.+....+..+....        +|...++++.++.+|
T Consensus        64 ~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~en  103 (230)
T d1l2ta_          64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN  103 (230)
T ss_dssp             ETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred             ECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHH
Confidence            48888766666654432        355667777788777

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.27  E-value=7.1e-13  Score=106.81  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088         29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V  102 (166)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~  102 (166)
                      |-+++++|+|.+.   ..++.++|+.|++|+     +++|+||||||||||+ ++.++..            |.+|+  +
T Consensus        12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge-----~iaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i   74 (253)
T d3b60a1          12 GDLEFRNVTFTYPGREVPALRNINLKIPAGK-----TVALVGRSGSGKSTIASLITRFYD------------IDEGHILM   74 (253)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTC-----EEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEE
T ss_pred             eEEEEEEEEEEeCCCCCceeeceEEEEcCCC-----EEEEECCCCChHHHHHHHHhcccC------------CCccEEEE
Confidence            4688999998873   457889999999888     8999999999999999 8887765            88898  4


Q ss_pred             CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCC
Q psy18088        103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFN  152 (166)
Q Consensus       103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~  152 (166)
                      +|.+...++...+...   +.++.++..+++..| .+|.    +.+.+.++++...+.
T Consensus        75 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~  132 (253)
T d3b60a1          75 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM  132 (253)
T ss_dssp             TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH
T ss_pred             CCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHH
Confidence            8988776777776653   345566777777777 4553    456777777755543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.26  E-value=1.1e-13  Score=111.08  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      +++.+|++.+. ..++.++||.|++||     +++|+||||||||||+ ++.++..            |.+|++  +|.+
T Consensus         4 i~v~nl~k~yg~~~al~~vsl~i~~Ge-----~~~liG~sGaGKSTll~~i~gl~~------------p~sG~I~~~g~~   66 (240)
T d1g2912           4 VRLVDVWKVFGEVTAVREMSLEVKDGE-----FMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDKL   66 (240)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEE
T ss_pred             EEEEeEEEEECCEEEEcceeeEEcCCC-----EEEEECCCCChHHHHHHHHhcCCC------------CCCCEEEECCEE
Confidence            56778998885 667889999999999     8999999999999999 8887665            777763  6665


Q ss_pred             eeecCHH--------HHHHHHHcCCccceeeehhh------hcCCChHH----HHHHHhhccCCh
Q psy18088        107 YHFVTRA--------DMEERIAAGEFLEHAEFAAN------LYGTSQCG----RQNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~--------~f~~~~~~~~fle~~~~~gn------~yG~~~~~----I~~ile~v~L~~  153 (166)
                      ....+..        .+..++|...+.++.++.+|      .+|.+.++    ++++++.++|.+
T Consensus        67 i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~  131 (240)
T d1g2912          67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE  131 (240)
T ss_dssp             EEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred             ecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            4332221        12334566677788888777      36777654    555666777753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=5.9e-13  Score=106.71  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088         31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG  104 (166)
Q Consensus        31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G  104 (166)
                      .++++|+|.+.   ..++.++||.|++|+     .++|+||||||||||+ ++.++..            |..|+  ++|
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge-----~vaIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g   64 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLIDG   64 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhcCC------------CCCCEEEECC
Confidence            35678887762   457889999999888     8999999999999999 8887765            88887  589


Q ss_pred             cceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccC
Q psy18088        105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIF  151 (166)
Q Consensus       105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L  151 (166)
                      ++....+...+.+.   +.|..++..+++.+| .+|.+   .+.+.++++...+
T Consensus        65 ~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~  118 (241)
T d2pmka1          65 HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA  118 (241)
T ss_dssp             EETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTC
T ss_pred             EEecccchhhhhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhh
Confidence            98877788877764   344556777899998 45543   4556666654443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=2.2e-13  Score=109.29  Aligned_cols=106  Identities=14%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~  106 (166)
                      .++++|++.+. ..++.++||.|++||     +++|+||||||||||+ ++.++..            |.+|+  ++|++
T Consensus         7 I~v~nlsk~yg~~~al~~vsl~v~~Ge-----~~~liGpsGaGKSTLl~~i~Gl~~------------p~sG~I~i~g~~   69 (239)
T d1v43a3           7 VKLENLTKRFGNFTAVNKLNLTIKDGE-----FLVLLGPSGCGKTTTLRMIAGLEE------------PTEGRIYFGDRD   69 (239)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEE
T ss_pred             EEEEEEEEEECCEEEEcceeEEECCCC-----EEEEECCCCChHHHHHHHHHcCCC------------CCCCEEEEccee
Confidence            56789998885 778889999999999     8999999999999999 8887664            66666  36654


Q ss_pred             eeecCHHH--HHHHHHcCCccceeeehhh------hcCCChHHH----HHHHhhccCCh
Q psy18088        107 YHFVTRAD--MEERIAAGEFLEHAEFAAN------LYGTSQCGR----QNGRNYLIFNT  153 (166)
Q Consensus       107 y~fvs~~~--f~~~~~~~~fle~~~~~gn------~yG~~~~~I----~~ile~v~L~~  153 (166)
                      ....+...  +..++|...+.++.++.+|      .+|.+++++    +++++.++|.+
T Consensus        70 i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (239)
T d1v43a3          70 VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE  128 (239)
T ss_dssp             CTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred             cccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            32222211  1122344456667777776      356666444    44566777753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.24  E-value=1.3e-13  Score=110.93  Aligned_cols=106  Identities=14%  Similarity=0.075  Sum_probs=74.1

Q ss_pred             eEEeeeccee--e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         31 TVRILLNYRT--C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        31 ~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      +++++|++.|  . ..++.++|+.|++||     +++|+||||||||||+ ++.++..            |.+|++  +|
T Consensus         4 i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge-----~~~iiG~sGsGKSTll~~i~gl~~------------p~~G~I~~~g   66 (242)
T d1oxxk2           4 IIVKNVSKVFKKGKVVALDNVNINIENGE-----RFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFDD   66 (242)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTC-----EEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred             EEEEeEEEEECCCCEEEEeceEEEECCCC-----EEEEECCCCCcHHHHHHHHHcCcC------------CCCceEEECC
Confidence            5677899888  3 677889999999999     8999999999999999 8888654            667763  66


Q ss_pred             cceeecCHH-------HHHHHHHcCCccceeeehhh------hcCCChHH----HHHHHhhccCCh
Q psy18088        105 KAYHFVTRA-------DMEERIAAGEFLEHAEFAAN------LYGTSQCG----RQNGRNYLIFNT  153 (166)
Q Consensus       105 ~~y~fvs~~-------~f~~~~~~~~fle~~~~~gn------~yG~~~~~----I~~ile~v~L~~  153 (166)
                      ++....+..       .+...+|...+.++.++.+|      .+|.+++.    ++++++.++|.+
T Consensus        67 ~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~  132 (242)
T d1oxxk2          67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH  132 (242)
T ss_dssp             EEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG
T ss_pred             EEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHh
Confidence            554322211       12233455567777788777      34566543    566666777753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.23  E-value=5.3e-13  Score=106.93  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088         30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG  104 (166)
Q Consensus        30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G  104 (166)
                      ++++.+|+|.+.  ..++.++++.+++|+     +++|+||||||||||+ ++.++..            |..|++  +|
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g   63 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNS-----IIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDG   63 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTE-----EEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETT
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHHhhC------------CCCCEEEECC
Confidence            456778888773  567889999999888     8999999999999999 8888776            888984  88


Q ss_pred             cceeecCHHHHHH---HHHcCCccceeeehhh-hcCCC----hHHHHHHHhh
Q psy18088        105 KAYHFVTRADMEE---RIAAGEFLEHAEFAAN-LYGTS----QCGRQNGRNY  148 (166)
Q Consensus       105 ~~y~fvs~~~f~~---~~~~~~fle~~~~~gn-~yG~~----~~~I~~ile~  148 (166)
                      .+..-++...+.+   ++.|+.++..+++.+| .+|..    .+.+.++++.
T Consensus        64 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~  115 (242)
T d1mv5a_          64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL  115 (242)
T ss_dssp             EESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHH
T ss_pred             EEeccccHHHHHhheEEEccccccCCcchhhheecccccccchhhHHHHHHH
Confidence            7654444444333   2233455666788888 45532    3455555553

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.1e-12  Score=103.89  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=72.9

Q ss_pred             CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088         29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--  101 (166)
Q Consensus        29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--  101 (166)
                      |-.++++|+|.+.    ..++.++|+.|++|+     +++|+||||||||||+ ++.++..            |..|+  
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~li~gl~~------------p~~G~I~   72 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGE-----VTALVGPNGSGKSTVAALLQNLYQ------------PTGGQLL   72 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEE
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcccC------------CCcCEEE
Confidence            3578889998873    347889999999888     8999999999999999 8888776            88897  


Q ss_pred             cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC
Q psy18088        102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS  138 (166)
Q Consensus       102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~  138 (166)
                      ++|++....+...+.+.   +.|..++...++..| .||..
T Consensus        73 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~  113 (251)
T d1jj7a_          73 LDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLT  113 (251)
T ss_dssp             ETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCS
T ss_pred             ECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhc
Confidence            48988766677766654   234556666788888 57743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.17  E-value=4.6e-12  Score=101.90  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      +++.++|++.|. ..++.++||.|++||     +++|+||||||||||+ ++.+...            |.+|++  +|.
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Ge-----i~~liG~nGaGKSTLl~~i~Gl~~------------p~~G~I~~~g~   66 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGD-----VTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENK   66 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCC-----EEEEECCCCCcHHHHHHHHHCCCc------------CCCcEEEECCE
Confidence            678889998885 778899999999999     8999999999999999 7777654            778874  787


Q ss_pred             ceeecCHHHHHHH-----HHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEER-----IAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn  133 (166)
                      +....+..+..+.     +|...+++..++.+|
T Consensus        67 ~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~en   99 (254)
T d1g6ha_          67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN   99 (254)
T ss_dssp             ECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             eccchhHHHHHHhcCCccCCccccCCCCeeeee
Confidence            7655555554332     333344555555555

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.12  E-value=4.2e-12  Score=101.50  Aligned_cols=87  Identities=14%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~  105 (166)
                      +++..+|++.+. ..++.++||.|++||     +++|+||||||||||+ ++.++-.            |.+|+  ++|.
T Consensus         6 ~Lev~~l~k~yg~~~al~~vs~~i~~Ge-----i~~liGpnGaGKSTl~~~i~Gl~~------------p~~G~I~~~G~   68 (240)
T d1ji0a_           6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQ-----IVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQ   68 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             EEEEeeEEEEECCEEEEeeeeEEECCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEeccc
Confidence            678889999985 678889999999999     8999999999999999 7777654            88887  4887


Q ss_pred             ceeecCHHHHHHH-----HHcCCccceeeehhh
Q psy18088        106 AYHFVTRADMEER-----IAAGEFLEHAEFAAN  133 (166)
Q Consensus       106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn  133 (166)
                      +....+.....+.     .+...+.++.++.+|
T Consensus        69 ~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en  101 (240)
T d1ji0a_          69 DITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             ccccccHHHHHHhcccccCcccccCCcccHHHH
Confidence            7654444444331     233345666677776

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.09  E-value=4.7e-12  Score=102.26  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088         30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK  105 (166)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~  105 (166)
                      .+++.+|++.+. ..++.++||.|++||     +++|+||||||||||+ ++.++..            |.+|++  +|+
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GE-----i~~iiG~sGsGKSTLl~~i~Gl~~------------p~~G~I~~~G~   64 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGD-----VISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQ   64 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCC-----EEEEECCCCCcHHHHHHHHHcCcc------------CCCCCEEECCE
Confidence            356778888884 678899999999999     8999999999999999 7777664            777874  676


Q ss_pred             ceeec----------CHHHHHH-------HHHcCCccceeeehhh-------hcCCChH----HHHHHHhhccCChhHHh
Q psy18088        106 AYHFV----------TRADMEE-------RIAAGEFLEHAEFAAN-------LYGTSQC----GRQNGRNYLIFNTLAAK  157 (166)
Q Consensus       106 ~y~fv----------s~~~f~~-------~~~~~~fle~~~~~gn-------~yG~~~~----~I~~ile~v~L~~~~~~  157 (166)
                      +....          +......       .+|...+.+..++.+|       ..+.+..    .+.++++.+++.+....
T Consensus        65 ~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  144 (258)
T d1b0ua_          65 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG  144 (258)
T ss_dssp             ECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             EeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhc
Confidence            54221          1111111       1344556666666665       2345543    34555667788765544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.2e-11  Score=98.69  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=74.5

Q ss_pred             eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      .++.+|++.+. ..+++++||.|++||     +++|+||||||||||+ ++.++..            |..|++  +|.+
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Ge-----i~glvG~nGaGKSTLl~~l~G~~~------------p~~G~i~i~G~~   65 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGE-----IFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVFGKN   65 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECcEe
Confidence            56778999996 778899999999999     8999999999999999 8877665            888864  7765


Q ss_pred             eeecCHHHHHHH----HHcCCccceeeehhh------hcCCChHHHH----HHHhhccCChhHHhh
Q psy18088        107 YHFVTRADMEER----IAAGEFLEHAEFAAN------LYGTSQCGRQ----NGRNYLIFNTLAAKC  158 (166)
Q Consensus       107 y~fvs~~~f~~~----~~~~~fle~~~~~gn------~yG~~~~~I~----~ile~v~L~~~~~~~  158 (166)
                      ..- ........    .+...+.++.+..+|      .|+.+.++++    .+++.+++++...+.
T Consensus        66 i~~-~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  130 (238)
T d1vpla_          66 VVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR  130 (238)
T ss_dssp             TTT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB
T ss_pred             ccc-ChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhh
Confidence            321 22222221    244445555555554      4777776554    444466666544333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.93  E-value=5e-11  Score=92.46  Aligned_cols=59  Identities=22%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA  106 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~  106 (166)
                      +++.+|++.+...++.++|+.|++|+     +++|+||||||||||+ ++.++-.            |..|++  +|++
T Consensus         3 lev~~ls~~y~~~vl~~is~~i~~Ge-----i~~l~G~NGsGKSTLl~~i~gl~~------------p~~G~I~~~g~~   64 (200)
T d1sgwa_           3 LEIRDLSVGYDKPVLERITMTIEKGN-----VVNFHGPNGIGKTTLLKTISTYLK------------PLKGEIIYNGVP   64 (200)
T ss_dssp             EEEEEEEEESSSEEEEEEEEEEETTC-----CEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             EEEEEEEEEeCCeEEeceEEEEcCCC-----EEEEECCCCChHHHHHHHHhcccc------------cCCCEEEECCEe
Confidence            56778888777778899999999999     7999999999999999 7777654            777764  6654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.86  E-value=5.2e-11  Score=95.30  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=58.4

Q ss_pred             CCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHH--HHHHHHHc
Q psy18088         47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRA--DMEERIAA  121 (166)
Q Consensus        47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~--~f~~~~~~  121 (166)
                      ++||.+. +|     +++|+||||||||||+ ++.++-.            |.+|++  +|++....+..  .+..++|.
T Consensus        17 ~vs~~~~-~e-----~~~liGpnGaGKSTll~~i~Gl~~------------p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~   78 (240)
T d2onka1          17 NVDFEMG-RD-----YCVLLGPTGAGKSVFLELIAGIVK------------PDRGEVRLNGADITPLPPERRGIGFVPQD   78 (240)
T ss_dssp             EEEEEEC-SS-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred             EEEEEeC-CE-----EEEEECCCCChHHHHHHHHHcCCC------------CCceEEEECCEECCcCCHHHcCceeeccc
Confidence            4555553 35     7999999999999999 8887665            777763  67654333322  23334566


Q ss_pred             CCccceeeehhh-hcCC---Ch----HHHHHHHhhccCC
Q psy18088        122 GEFLEHAEFAAN-LYGT---SQ----CGRQNGRNYLIFN  152 (166)
Q Consensus       122 ~~fle~~~~~gn-~yG~---~~----~~I~~ile~v~L~  152 (166)
                      ..+.++.++.+| .||.   ++    +.++++++.++|.
T Consensus        79 ~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~  117 (240)
T d2onka1          79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA  117 (240)
T ss_dssp             CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT
T ss_pred             hhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH
Confidence            677888888888 5554   33    3456666677765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.1e-09  Score=86.55  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088         31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY  107 (166)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y  107 (166)
                      +++.+|+..+   .+.++|+.|++||     +++|+||||||||||+ ++.++.             |..|++  +|++.
T Consensus         4 l~~~dv~~~~---~l~~isl~I~~Ge-----i~~iiG~nGaGKSTLl~~l~Gl~-------------~~~G~I~~~g~~i   62 (231)
T d1l7vc_           4 MQLQDVAEST---RLGPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMT-------------SGKGSIQFAGQPL   62 (231)
T ss_dssp             EEEEEECCTT---TSCSEEEEEETTC-----EEECBCCTTSSHHHHHHHHHTSC-------------CCSSEEEESSSBG
T ss_pred             EEEECcccCc---eecCEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCC-------------CCceEEEECCEEC
Confidence            4555665443   5778899999999     8999999999999999 777653             445764  77765


Q ss_pred             eecCHHHHH
Q psy18088        108 HFVTRADME  116 (166)
Q Consensus       108 ~fvs~~~f~  116 (166)
                      ...+..+..
T Consensus        63 ~~~~~~~~~   71 (231)
T d1l7vc_          63 EAWSATKLA   71 (231)
T ss_dssp             GGSCHHHHH
T ss_pred             CcCCHHHHH
Confidence            555555444

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=5.5e-09  Score=84.77  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088         42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~   84 (166)
                      .+++.++|+.|++|+     +++|+||||||||||+ +|.++..
T Consensus        49 ~pvL~~isl~i~~Ge-----~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          49 NPVLKNINLNIEKGE-----MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CEEEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CeEEeCeEEEEcCCC-----EEEEECCCCChHHHHHHHHhCCCc
Confidence            567888999999888     8999999999999999 8877665

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.96  E-value=1.2e-06  Score=62.91  Aligned_cols=22  Identities=18%  Similarity=0.086  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |++|+|+||+||||||+. .++.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            668999999999999999 5543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.83  E-value=2.6e-06  Score=60.21  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +.++|+|.||+|||||||+  |+...+
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3568999999999999999  666555

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.82  E-value=2.6e-06  Score=60.50  Aligned_cols=24  Identities=13%  Similarity=-0.038  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .++|+|.||+||||||++  |...++
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            468999999999999999  544444

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=5.7e-06  Score=59.73  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChhhhc--cccccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      |+|+||+|||||||+  ++..++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            789999999999999  554444

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=4e-06  Score=60.06  Aligned_cols=24  Identities=13%  Similarity=0.052  Sum_probs=20.0

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+++++|+||+||||||+. .++.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999999 4444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=2.2e-06  Score=67.50  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=42.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC--------Cc---ceeecCHHHHHHHH
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD--------GK---AYHFVTRADMEERI  119 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~--------G~---~y~fvs~~~f~~~~  119 (166)
                      ++..+|+|+||+|||||+  |+...- .-...|+       |||+...--..+        |.   ....++.++..   
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~-~~t~~vs~~~~rGrHTTt~~~l~~~~gg~iiDTPG~r~~~l~~~~~~~l~---  172 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELG---  172 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCHHHHG---
T ss_pred             cceEEEECCCCccHHHHHHhhccHhH-hhhcccccccCCCceeeeeEEEEecCCCEEEECCccccccccccCcccch---
Confidence            568899999999999999  665422 1222333       777764221112        21   11223333322   


Q ss_pred             HcCCccceeeehhh-------hcCCChHHHHHHHhh
Q psy18088        120 AAGEFLEHAEFAAN-------LYGTSQCGRQNGRNY  148 (166)
Q Consensus       120 ~~~~fle~~~~~gn-------~yG~~~~~I~~ile~  148 (166)
                        ..|.|+..+.++       +-.-+.++|+++++.
T Consensus       173 --~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~  206 (231)
T d1t9ha2         173 --YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVED  206 (231)
T ss_dssp             --GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHH
T ss_pred             --hhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHc
Confidence              245555444433       345677889988874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.68  E-value=5.8e-06  Score=58.93  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .++|+|.|||||||||+.  |...++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            458999999999999999  555554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=5.1e-06  Score=59.30  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.0

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.|.|+|+||+|||||||+ .++.
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999999 4443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=5e-06  Score=58.13  Aligned_cols=21  Identities=24%  Similarity=0.083  Sum_probs=17.7

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |.|+|+||+|||||||. +++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 5554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.63  E-value=6.9e-06  Score=60.76  Aligned_cols=26  Identities=8%  Similarity=-0.139  Sum_probs=21.0

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      +++.+|+|+||+||||||+. +++...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34668999999999999999 665533

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=7.3e-06  Score=58.34  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChhhhc--cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      ++++|+|++|||||||+  |+..+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999  776543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=1.3e-05  Score=62.73  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=49.6

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccccccceeeeE-------EeecCCCCCCccC---------Cc---ceeecCHHHHHH
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSV-------SHTTRGPRPGEVD---------GK---AYHFVTRADMEE  117 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v-------~~TTR~p~~ge~~---------G~---~y~fvs~~~f~~  117 (166)
                      .++..+++|+||||||||+  |+...- .-...+       .|||+...--.++         |.   +...++.++...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~  172 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH  172 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh-hhccCcccccCCCCccccceeEEEECCCcEEEeCCccccccccccCcchhhh
Confidence            3668999999999999999  654322 112222       3788765433332         11   222234444333


Q ss_pred             HHHcCCccceee---ehhh--hcCCChHHHHHHHhhccCChhHHhh
Q psy18088        118 RIAAGEFLEHAE---FAAN--LYGTSQCGRQNGRNYLIFNTLAAKC  158 (166)
Q Consensus       118 ~~~~~~fle~~~---~~gn--~yG~~~~~I~~ile~v~L~~~~~~~  158 (166)
                           .|.|+..   ...|  +-+-+.++|+++++.=.+.+...+.
T Consensus       173 -----~F~e~~~~~CkF~dC~H~~EpgCaVk~av~~g~i~~~Ry~~  213 (225)
T d1u0la2         173 -----YFKEFGDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYEN  213 (225)
T ss_dssp             -----GSTTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH
T ss_pred             -----hhhhHHhCCCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence                 3444432   1122  4566778899988743344444443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.51  E-value=1.4e-05  Score=56.91  Aligned_cols=24  Identities=17%  Similarity=0.091  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .|.+|.|+|+||||||||.  |...+
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999  44443

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=2.5e-05  Score=57.74  Aligned_cols=25  Identities=16%  Similarity=-0.053  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      ..++|+|+||+||||||+. +++...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3558999999999999999 666544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.40  E-value=1.7e-05  Score=56.32  Aligned_cols=20  Identities=30%  Similarity=0.193  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|+||+||||||+. .++.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            4779999999999999 5543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.39  E-value=2.2e-05  Score=56.14  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=17.6

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      |+|+|.||+||||||+. .+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999 443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=2.5e-05  Score=56.70  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +|+|.||+|||||||.  |...+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            6789999999999999  544433

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.39  E-value=2.4e-05  Score=55.89  Aligned_cols=22  Identities=27%  Similarity=0.150  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +--|+|.||+||||||+. .++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            446999999999999999 5544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.39  E-value=1.8e-05  Score=57.55  Aligned_cols=21  Identities=24%  Similarity=0.035  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.|+|+||+||||||+. +++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999 6654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.2e-05  Score=58.47  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|.+|.|+|+||||||||. .++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4668999999999999999 5544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.33  E-value=2.5e-05  Score=56.44  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChhhhc--cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +++.|+|++|||||||+  |+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            37899999999999999  777654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=2.5e-05  Score=58.55  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCC
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~   98 (166)
                      +|++|+|-|+.||||||++ ++...-...+......||+|.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~   41 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG   41 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            3679999999999999999 555422223444445567774

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=3.9e-05  Score=56.82  Aligned_cols=25  Identities=16%  Similarity=-0.114  Sum_probs=20.5

Q ss_pred             cCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++++|+|+||+||||||+. .++..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999 65553

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.24  E-value=3.2e-05  Score=56.92  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .|+|+||+||||||+. +++..
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999 66553

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=4.3e-05  Score=56.19  Aligned_cols=22  Identities=9%  Similarity=-0.073  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCChhhhc-ccccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .+|+|+||+||||||+. +++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999 66553

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=7.1e-05  Score=55.17  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.+|+++|++||||||+.  +...
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            559999999999999999  6544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=5e-05  Score=56.20  Aligned_cols=23  Identities=13%  Similarity=-0.029  Sum_probs=19.2

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++|+|.||+||||+|+. +++..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999 66553

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.19  E-value=4.4e-05  Score=54.73  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++|+|.|++||||||+. +++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999 5543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=4.9e-05  Score=53.88  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCChhhhc--ccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      |-|.|.||+|+|||||+  ++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            45899999999999999  55443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.12  E-value=7.1e-05  Score=54.97  Aligned_cols=22  Identities=14%  Similarity=-0.133  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +--|+|+||+||||||+. +++.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            345778999999999999 6665

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=5.7e-05  Score=54.61  Aligned_cols=21  Identities=10%  Similarity=0.089  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChhhhc-cccccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      |+|+||+||||||+. +++...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999 665533

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.10  E-value=9.1e-05  Score=53.92  Aligned_cols=52  Identities=21%  Similarity=0.217  Sum_probs=32.3

Q ss_pred             EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc---cCCcceeecCHHHHH
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE---VDGKAYHFVTRADME  116 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge---~~G~~y~fvs~~~f~  116 (166)
                      |+|+|+++||||||+  |.....  ....-+.+|+.+..+.   .+|..+.+++.+.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~   60 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI   60 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC--ceecCCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence            899999999999999  654432  1112234455454442   245567777776653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.05  E-value=0.00014  Score=53.22  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=20.2

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++-+|+|-|+.||||||++ ++..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            45569999999999999999 6554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=8.3e-05  Score=53.63  Aligned_cols=19  Identities=21%  Similarity=0.148  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |+|+|++||||||+. +++.
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            667799999999999 6654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=8.3e-05  Score=53.56  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      .|+|+|++|||||||+  |+.... ......+.+|+.+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~   41 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQD   41 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccc
Confidence            5899999999999999  665432 1234445566655444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=5e-05  Score=54.93  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGP   97 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p   97 (166)
                      .|+|+|+++||||||+  |+.....  ....+.|||..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~   37 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKI   37 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce--eeCCCCEeecc
Confidence            4899999999999999  6544221  12233456654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.95  E-value=9.7e-05  Score=53.39  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |+|+||+||||||+. +++.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            788999999999999 6654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00015  Score=53.13  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.|+|+|+++||||||+  |+..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999  6654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.92  E-value=0.00011  Score=53.71  Aligned_cols=21  Identities=14%  Similarity=0.042  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .|+|+||+||||||+. +++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999 66653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.91  E-value=0.00018  Score=54.64  Aligned_cols=23  Identities=22%  Similarity=-0.037  Sum_probs=18.8

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++.|+|.||+|||||||+ .++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999 4443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00029  Score=50.99  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g  100 (166)
                      -|+|+|.+|+|||||+  |+.... ......+.||+....+
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~~~~   49 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDD   49 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-ceeeccccccccccee
Confidence            5899999999999999  765432 1222334455544433

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.85  E-value=0.00013  Score=53.01  Aligned_cols=21  Identities=24%  Similarity=0.105  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChhhhc-cccccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      |+|+||+||||||+. +++...
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999 665533

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00015  Score=54.13  Aligned_cols=16  Identities=25%  Similarity=-0.014  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +|+|.||+|||||||.
T Consensus         4 iIgI~G~~gSGKSTla   19 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVC   19 (213)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            7889999999999999

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.84  E-value=0.00015  Score=53.06  Aligned_cols=17  Identities=29%  Similarity=0.292  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      .+|+++|++|||||||+
T Consensus         3 ~li~l~GlpgsGKSTla   19 (213)
T d1bifa1           3 TLIVMVGLPARGKTYIS   19 (213)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            47999999999999999

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00024  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCChhhhc-ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .++|+|-|+.||||||++ +++..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999 55543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.83  E-value=0.00016  Score=53.86  Aligned_cols=21  Identities=19%  Similarity=0.033  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      .|+|.||+||||||+. +|+..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778899999999999 66653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00016  Score=52.41  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChhhhc-cccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      .|+|+||+||||||+. +++...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            3788999999999999 665543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.71  E-value=0.00026  Score=52.86  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +|+|+||.|||||||+  |+...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            6899999999999999  65433

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00026  Score=50.56  Aligned_cols=21  Identities=19%  Similarity=-0.086  Sum_probs=18.5

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..|+++.|.||+|+|||+|.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~   40 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQIC   40 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHH
Confidence            445669999999999999999

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00048  Score=48.98  Aligned_cols=23  Identities=17%  Similarity=0.008  Sum_probs=18.9

Q ss_pred             CCcEEEEEcCCCCChhhhc--cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ...-|+|+|+++||||||+  |...
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446999999999999999  6554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00022  Score=49.40  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|+++||||||+  |+.+
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999  6655

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.00021  Score=50.79  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      -|+|+|++|||||||+  |....
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            4889999999999999  66553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00021  Score=50.39  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      -|+|+|+++||||||+  |+...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            4889999999999999  76543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.66  E-value=0.00043  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .++++.++||+||||||.+  |...+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999998  65443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.00035  Score=52.36  Aligned_cols=25  Identities=16%  Similarity=0.103  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      ++.++|.||+|+|||||+  ++.....
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            458999999999999999  6655443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00021  Score=51.74  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +|+|+|.+|||||||+  |+..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999  6654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.64  E-value=0.00024  Score=52.76  Aligned_cols=22  Identities=9%  Similarity=-0.078  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChhhhc-cccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~~   83 (166)
                      -|+|+||+||||||+. +++...
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            4778999999999999 666533

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00025  Score=51.67  Aligned_cols=21  Identities=14%  Similarity=0.015  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChhhhc-ccccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~~   82 (166)
                      -|+|+||.||||||+. +++..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3778899999999999 66553

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.59  E-value=0.00033  Score=48.68  Aligned_cols=19  Identities=37%  Similarity=0.427  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  +...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999  5544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.59  E-value=0.00025  Score=52.00  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      .|+|+|++|||||||+  |..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            5999999999999999  653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.55  E-value=0.0001  Score=59.44  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCChhhhc--cccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      ++|+|.|+|||||||+.  |...+.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHh
Confidence            48999999999999999  444443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00039  Score=52.54  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.++|.||+|+||||++ +++.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999 5555

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00045  Score=49.36  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +|+|+|.++||||||+  |+..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999  7654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.00035  Score=51.09  Aligned_cols=20  Identities=25%  Similarity=0.170  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.|++||||||+. ++..
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            7889999999999999 6655

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.43  E-value=0.00031  Score=54.78  Aligned_cols=51  Identities=14%  Similarity=0.055  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC--ccCCcceeecCHH
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRA  113 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g--e~~G~~y~fvs~~  113 (166)
                      -|+|+|.+|+|||||.  |+..... -....+-|||.+..+  ..+|..+.+++-+
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTP   88 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTP   88 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCce-eecCCCCcceeEEEEEEEeccEEEEEEeee
Confidence            5899999999999999  5554211 112334566655433  3456555554433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00048  Score=52.02  Aligned_cols=23  Identities=22%  Similarity=-0.039  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|++|+|-||.||||||+. ++..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            4669999999999999999 4443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.00053  Score=53.20  Aligned_cols=17  Identities=18%  Similarity=0.090  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ++.+|+||+|||||||+
T Consensus        25 ~lnvlvG~NgsGKS~iL   41 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNII   41 (308)
T ss_dssp             SEEEEECCTTTCSTHHH
T ss_pred             CeEEEECCCCCcHHHHH
Confidence            38999999999999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.35  E-value=0.00056  Score=47.64  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  ++..
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999  6554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00054  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.129  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +.+|+++||+||||||.+  |...+
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999988  65543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00068  Score=50.02  Aligned_cols=21  Identities=10%  Similarity=-0.110  Sum_probs=18.5

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..++++.|.||+|+|||||.
T Consensus        31 i~~G~~~li~G~pGsGKT~l~   51 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLC   51 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHH
T ss_pred             CcCCeEEEEEcCCCCCHHHHH
Confidence            445669999999999999999

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.00068  Score=50.73  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-+.|.||||+||||++  |+..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            558999999999999999  6654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.23  E-value=0.00074  Score=50.57  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-+.|.||||+||||++  |+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            558999999999999999  6654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.00018  Score=50.75  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=24.0

Q ss_pred             EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCC
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRP   99 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~   99 (166)
                      |+|+|.++||||||+  |..... ......+.+|+.+..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~~-~~~~~~~~~~~~~~~   40 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVIS   40 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc-eeeecccccccccee
Confidence            899999999999999  654432 233444455555543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.20  E-value=0.0006  Score=52.28  Aligned_cols=23  Identities=17%  Similarity=0.014  Sum_probs=14.9

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +.+|.++||+||||||.+  |...+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999998  65544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.00071  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |-|+|+|++|||||||+  |+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999  6654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.00073  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.298  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +.+|+++||+||||||.+  |...+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999998  65543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.00063  Score=51.28  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -+.|.||+|+||||++ +++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999 6655

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.00065  Score=51.07  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -+.|.||+|+||||++ +++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            4789999999999999 5554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.00077  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.067  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCChhhhc-cccc
Q psy18088         59 FFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|++|+|-|+-||||||+. ++..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999999999 5543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.12  E-value=0.00089  Score=50.17  Aligned_cols=19  Identities=26%  Similarity=0.179  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      .++|.||+|+||||++ +++
T Consensus        47 ~lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            5889999999999999 443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.12  E-value=0.00074  Score=51.51  Aligned_cols=23  Identities=17%  Similarity=-0.022  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +++++++||+||||||.+  |...+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999998  55443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.10  E-value=0.00091  Score=47.33  Aligned_cols=19  Identities=32%  Similarity=0.462  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  |...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            889999999999999  5544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.06  E-value=0.001  Score=49.63  Aligned_cols=22  Identities=23%  Similarity=-0.065  Sum_probs=19.2

Q ss_pred             cccCCcEEEEEcCCCCChhhhc
Q psy18088         56 RIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        56 ~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      =+..++++.|.||+|+||||+.
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~   53 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLA   53 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHH
Confidence            3456779999999999999998

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.05  E-value=0.0012  Score=49.90  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         59 FFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++.+|-|.|.||||||||.  |...+
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3558999999999999999  55443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.02  E-value=0.0015  Score=48.76  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .+.++|.||+|+|||+++  +...+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            347999999999999999  554443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.01  E-value=0.00089  Score=47.59  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999  5544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.00094  Score=47.70  Aligned_cols=18  Identities=22%  Similarity=0.469  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|++|||||||+  ++.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            789999999999999  654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.97  E-value=0.0011  Score=49.17  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++-+.|.|+||+||||+.  |+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            558999999999999999  6654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.00098  Score=47.36  Aligned_cols=18  Identities=22%  Similarity=0.497  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|++|||||||+  ++.
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            789999999999999  664

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0011  Score=53.42  Aligned_cols=21  Identities=19%  Similarity=0.074  Sum_probs=17.6

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +-+|+|.|+|||||||+. ++.
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHH
Confidence            348999999999999998 443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.00094  Score=47.52  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999  5543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0015  Score=48.44  Aligned_cols=22  Identities=23%  Similarity=0.030  Sum_probs=19.5

Q ss_pred             cccCCcEEEEEcCCCCChhhhc
Q psy18088         56 RIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        56 ~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      =+..++++.|.||+|+|||++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~la   54 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLS   54 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHH
Confidence            3566779999999999999999

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0019  Score=46.00  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0012  Score=47.03  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=16.3

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999  5543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.0011  Score=47.45  Aligned_cols=19  Identities=42%  Similarity=0.611  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+++|++|||||||+  ++..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999  6543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.89  E-value=0.0012  Score=47.01  Aligned_cols=20  Identities=30%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999  6554

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0011  Score=47.07  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++.+
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999  6654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0016  Score=52.00  Aligned_cols=18  Identities=11%  Similarity=0.014  Sum_probs=16.4

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +.+.+|+||+|||||+|+
T Consensus        25 ~~l~~i~G~NGsGKS~il   42 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMM   42 (427)
T ss_dssp             CSEEEEECSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            348899999999999999

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.85  E-value=0.0009  Score=48.23  Aligned_cols=19  Identities=32%  Similarity=0.462  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.++||||||+  |...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999  6543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.002  Score=45.96  Aligned_cols=19  Identities=32%  Similarity=0.445  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999  6643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.00027  Score=50.11  Aligned_cols=16  Identities=13%  Similarity=-0.052  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +.+|+||+|||||||+
T Consensus        26 ~tvi~G~NGsGKStil   41 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTM   41 (222)
T ss_dssp             HHHHHSCCSHHHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            7889999999999999

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0012  Score=47.03  Aligned_cols=19  Identities=16%  Similarity=0.366  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999  6654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.0011  Score=52.76  Aligned_cols=21  Identities=29%  Similarity=0.157  Sum_probs=17.0

Q ss_pred             CcEEEEEcCCCCChhhhc-ccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++-+.|+||+|||||.|+ .++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHh
Confidence            345789999999999999 443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.79  E-value=0.0015  Score=48.53  Aligned_cols=20  Identities=15%  Similarity=0.017  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +|+|.|++||||||+. ++..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999 6654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0012  Score=49.15  Aligned_cols=15  Identities=33%  Similarity=0.253  Sum_probs=14.4

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      ++|.||+|+||||++
T Consensus        36 lll~Gp~G~GKTtl~   50 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTI   50 (237)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCChHHHH
Confidence            789999999999999

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.76  E-value=0.002  Score=48.05  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             ccCCcEEEEEcCCCCChhhhc--cccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +.++.++.|.||+|+|||+|+  ++..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            445669999999999999999  5554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0015  Score=47.27  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999  6543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0016  Score=46.70  Aligned_cols=19  Identities=32%  Similarity=0.382  Sum_probs=15.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++.+
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999  6654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.74  E-value=0.0014  Score=46.45  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  |...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999  5544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.73  E-value=0.0012  Score=51.17  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=19.8

Q ss_pred             cccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         56 RIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        56 ~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +..+.+-|.|.||+|||||+|+ .++.
T Consensus        36 ~~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          36 DRTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3334457899999999999999 4443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.0014  Score=46.24  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6644

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.0013  Score=49.10  Aligned_cols=15  Identities=20%  Similarity=0.321  Sum_probs=14.3

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      ++|.||+|+||||++
T Consensus        39 ~ll~Gp~G~GKTt~a   53 (224)
T d1sxjb2          39 MIISGMPGIGKTTSV   53 (224)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCchhhH
Confidence            778999999999999

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0014  Score=46.85  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999  6554

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0015  Score=47.01  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999  5543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0019  Score=52.25  Aligned_cols=24  Identities=21%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      ...|+|.||+|+|||||+  |+..+.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            448999999999999999  765544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0014  Score=47.09  Aligned_cols=20  Identities=25%  Similarity=0.227  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  ++..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999  6554

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0015  Score=47.28  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  ++.+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  6654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.64  E-value=0.0016  Score=46.96  Aligned_cols=20  Identities=30%  Similarity=0.286  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  +...
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999  5443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0019  Score=48.16  Aligned_cols=21  Identities=10%  Similarity=-0.072  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChhhhc-cccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -+|+|.|+.||||||+. ++..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            37899999999999999 6654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.61  E-value=0.003  Score=50.91  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhhhc--ccccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLD   84 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~   84 (166)
                      -++|+||+||||||++  |+...|.
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CEEEEeeccccchHHHHHHhhhccc
Confidence            4899999999999999  8877765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.59  E-value=0.0017  Score=46.51  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||||+  ++..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999  6544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0017  Score=46.14  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0017  Score=46.45  Aligned_cols=19  Identities=16%  Similarity=0.422  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999  6543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.002  Score=50.26  Aligned_cols=24  Identities=21%  Similarity=0.076  Sum_probs=19.4

Q ss_pred             cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ..++-+.|.||+|||||+|+ .++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHH
Confidence            34567899999999999999 4444

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0017  Score=46.29  Aligned_cols=19  Identities=21%  Similarity=0.508  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999  6644

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.002  Score=46.11  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=16.4

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            788999999999999  5543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0017  Score=46.11  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+++|.+|||||||+  ++.+
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0021  Score=45.85  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|++|||||+|+  ++..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999  6643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.002  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +++|+|=|+-||||||++ ++..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            469999999999999999 5544

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0019  Score=45.97  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|.+|||||||+  ++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            789999999999999  654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0019  Score=46.41  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  ++.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999  6654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.002  Score=45.78  Aligned_cols=19  Identities=21%  Similarity=0.413  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.002  Score=46.49  Aligned_cols=19  Identities=21%  Similarity=0.447  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.0021  Score=46.94  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChhhhc--cccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +|+|-|+-||||||++  |.+.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            6999999999999999  444443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0023  Score=45.81  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=8.5

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  |+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  6653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.41  E-value=0.0027  Score=46.49  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=18.3

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..++++.|.||+|+|||++.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~   51 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIM   51 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHH
Confidence            345569999999999999999

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0027  Score=45.32  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=16.3

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  +...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999  5543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0021  Score=45.35  Aligned_cols=18  Identities=28%  Similarity=0.525  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|.+|||||||+  ++.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            788999999999999  654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0026  Score=45.83  Aligned_cols=16  Identities=38%  Similarity=0.468  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|.+|||||||+
T Consensus         4 KivllG~~~vGKTsll   19 (200)
T d1zcba2           4 KILLLGAGESGKSTFL   19 (200)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3889999999999999

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0021  Score=45.85  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999  6543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.0026  Score=47.83  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|++|||||||+
T Consensus         8 KilllG~~~vGKTsll   23 (221)
T d1azta2           8 RLLLLGAGESGKSTIV   23 (221)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4799999999999999

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0025  Score=50.82  Aligned_cols=16  Identities=19%  Similarity=-0.037  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +|+|.|++|||||||.
T Consensus        29 iIGi~G~qGSGKSTl~   44 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTS   44 (286)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEeECCCCCCHHHHH
Confidence            7889999999999999

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0022  Score=46.78  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||+|+  ++.+
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999  6654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.0022  Score=46.93  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++..
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            889999999999999  6644

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0024  Score=45.37  Aligned_cols=19  Identities=16%  Similarity=0.371  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||+|+  ++.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999  6544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0024  Score=46.32  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||+|+  ++.+
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999  5554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0026  Score=45.28  Aligned_cols=19  Identities=32%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|++|||||||+  ++.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999  5554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.22  E-value=0.0034  Score=45.79  Aligned_cols=21  Identities=24%  Similarity=0.094  Sum_probs=18.3

Q ss_pred             ccCCcEEEEEcCCCCChhhhc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +..+.++.|.|++|+|||+|+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la   43 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFS   43 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHH
Confidence            445669999999999999998

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.0032  Score=52.00  Aligned_cols=38  Identities=18%  Similarity=0.074  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChhhhc--cccccc---cceeeeEEeecCCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVL---DRFGFSVSHTTRGPRP   99 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~---~~f~~~v~~TTR~p~~   99 (166)
                      -|+|+|.+|+|||||+  |+....   ......+..||+.+..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~  100 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP  100 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee
Confidence            3999999999999999  654321   1222344556765543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0031  Score=45.18  Aligned_cols=19  Identities=16%  Similarity=0.301  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  +...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999  5443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0027  Score=47.57  Aligned_cols=16  Identities=19%  Similarity=-0.008  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -++|.||+|+||||++
T Consensus        35 ~lll~Gp~G~GKTt~~   50 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRC   50 (252)
T ss_dssp             CEEEECSTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            3789999999999999

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.0026  Score=47.30  Aligned_cols=18  Identities=33%  Similarity=0.237  Sum_probs=15.5

Q ss_pred             EEEEcCCCCChhhhc-ccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~   80 (166)
                      +.|.||+|+||||++ ++.
T Consensus        38 lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHH
Confidence            679999999999999 443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.16  E-value=0.005  Score=49.57  Aligned_cols=22  Identities=9%  Similarity=-0.031  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCCChhhhc--cccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ...|.|.||.|+|||||+  |+..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            347999999999999999  7654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.16  E-value=0.0042  Score=47.47  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=16.4

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      |.+++|.|+||+|||+++
T Consensus        35 G~l~vi~G~~G~GKT~~~   52 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFV   52 (277)
T ss_dssp             TCEEEEECSTTSSHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHH
Confidence            348999999999999998

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.15  E-value=0.0028  Score=45.23  Aligned_cols=19  Identities=21%  Similarity=0.364  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+|+|.+|||||||+  ++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            3789999999999999  554

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0028  Score=46.03  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|.+|||||||+  ++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999  6543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.09  E-value=0.0037  Score=51.57  Aligned_cols=24  Identities=25%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCChhhhc--cccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      .-+|+|.||+||||||.+  ++...+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            447999999999999999  777654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.05  E-value=0.0038  Score=48.23  Aligned_cols=22  Identities=23%  Similarity=0.098  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+-+.|.||+|+|||+|+ .++.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            446899999999999999 4443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0033  Score=45.12  Aligned_cols=18  Identities=39%  Similarity=0.514  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|.+|||||||+  ++.
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            889999999999999  554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.00  E-value=0.0043  Score=52.12  Aligned_cols=19  Identities=32%  Similarity=0.280  Sum_probs=16.4

Q ss_pred             EEEEcCCCCChhhhc-cccc
Q psy18088         63 ILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~-Li~~   81 (166)
                      |.++||||||||-|+ .++.
T Consensus        52 ILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            889999999999999 5544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0041  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=-0.014  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCChhhhc-cccc
Q psy18088         60 FACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      ++-+.|.||+|+|||+++ .++.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            456899999999999999 4444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.92  E-value=0.0021  Score=48.16  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCChhhhc--ccccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      .+.|.||+|+|||+++  +...+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            3556799999999999  55443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.0046  Score=44.11  Aligned_cols=18  Identities=22%  Similarity=0.414  Sum_probs=15.8

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|.+|||||||+  ++.
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            678999999999999  554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0052  Score=47.74  Aligned_cols=24  Identities=17%  Similarity=0.001  Sum_probs=19.4

Q ss_pred             cCCcEEEEEcCCCCChhhhc--cccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ...+-|.|.||+|+|||+|+  +...
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHH
Confidence            44567999999999999999  4444

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.81  E-value=0.0046  Score=46.31  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=17.5

Q ss_pred             cEEEEEcCCCCChhhhc-ccc
Q psy18088         61 ACILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li~   80 (166)
                      ++|+|.|+-||||||+. ++.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            37999999999999999 653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.75  E-value=0.0055  Score=50.10  Aligned_cols=20  Identities=30%  Similarity=0.167  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      -+.++||||||||.|+ .++.
T Consensus        70 niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHh
Confidence            3788999999999999 4443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.0049  Score=44.01  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+|+|.+|||||||+  +...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999  5444

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.65  E-value=0.0049  Score=46.46  Aligned_cols=16  Identities=31%  Similarity=0.198  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      ++.|.||+|+|||.|+
T Consensus        38 ~l~l~G~~G~GKTHLl   53 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLL   53 (213)
T ss_dssp             SEEEECSSSSSHHHHH
T ss_pred             cEEEECCCCCcHHHHH
Confidence            5889999999999999

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0054  Score=44.39  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+++|.+|||||||+  ++..
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999  5554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0049  Score=46.60  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -++|+||+|+|||+|+  |...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            5789999999999999  5554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.0064  Score=43.21  Aligned_cols=16  Identities=19%  Similarity=0.272  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      -|+|+|.+|||||||+
T Consensus         4 KivllG~~~vGKTsl~   19 (195)
T d1svsa1           4 KLLLLGAGESGKSTIV   19 (195)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3899999999999999

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.0072  Score=45.81  Aligned_cols=18  Identities=17%  Similarity=-0.121  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +.+++|.|++|+|||||+
T Consensus        29 g~~~~i~G~~G~GKS~l~   46 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLA   46 (274)
T ss_dssp             TSEEEEEESTTSSHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHH
Confidence            568999999999999999

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.0063  Score=48.50  Aligned_cols=20  Identities=25%  Similarity=0.189  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .++++||+|||||.|+ .++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            6889999999999999 4444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.16  E-value=0.0086  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.016  Sum_probs=20.6

Q ss_pred             cCCcEEEEEcCCCCChhhhc--ccccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++++.++|.||+|+|||++.  |+...
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            46779999999999999999  55443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.0084  Score=47.20  Aligned_cols=20  Identities=25%  Similarity=0.122  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -++|+||+|+|||+|+  |...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999  5543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.04  E-value=0.009  Score=46.86  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc-ccceeeeEEeecCCCCCC
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV-LDRFGFSVSHTTRGPRPG  100 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~-~~~f~~~v~~TTR~p~~g  100 (166)
                      .--++|+|-+.||||||+  |.... +.  ...-|.||..|..|
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~--~anypftTi~pn~g   51 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGN--PANYPYATIDPEEA   51 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTS--TTCCSSCCCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCC--cCCCCccCccCCeE
Confidence            336999999999999999  55331 21  12345667666554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.92  E-value=0.0085  Score=43.19  Aligned_cols=18  Identities=17%  Similarity=0.135  Sum_probs=16.3

Q ss_pred             EEEEcCCCCChhhhc--ccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~   80 (166)
                      |+|+|...+|||||+  |+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            999999999999999  653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.71  E-value=0.013  Score=45.51  Aligned_cols=18  Identities=17%  Similarity=-0.033  Sum_probs=16.5

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      .++|+|.|+.|+|||||+
T Consensus        44 ~~~v~I~GmgGiGKTtLA   61 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIA   61 (277)
T ss_dssp             SEEEEEECSTTSSHHHHH
T ss_pred             ceEEEEECCCCCCHHHHH
Confidence            358999999999999999

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.58  E-value=0.02  Score=39.03  Aligned_cols=18  Identities=17%  Similarity=0.034  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      .+..+|.+|+|+|||+++
T Consensus         8 ~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             CEEEEEECCTTSCTTTHH
T ss_pred             CCEEEEEeCCCCCHHHHH
Confidence            357899999999999988

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.014  Score=45.85  Aligned_cols=20  Identities=15%  Similarity=0.222  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      +|+|+||.++|||+|+  |...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            8999999999999999  5543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.013  Score=45.78  Aligned_cols=27  Identities=15%  Similarity=0.107  Sum_probs=22.4

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc--cccc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |=+..++++-|.||+|+|||||.  ++..
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence            55667889999999999999999  4443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.012  Score=44.40  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCChhhhc--ccccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      ++++|.|.-|||||||+  |+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            37899999999999999  76653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.014  Score=43.95  Aligned_cols=19  Identities=32%  Similarity=0.284  Sum_probs=16.3

Q ss_pred             cEEEEEcCCCCChhhhc-cc
Q psy18088         61 ACILHVDFAMFGKTSFL-FL   79 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~-Li   79 (166)
                      ..+.|.||+|+||||++ ++
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~   54 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLL   54 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHH
Confidence            36889999999999999 44

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.95  E-value=0.016  Score=44.69  Aligned_cols=16  Identities=38%  Similarity=0.208  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      ++.|.||.||||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4678899999999987

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.82  E-value=0.02  Score=42.95  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCChhhhc--cccc
Q psy18088         61 ACILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++|+|+|...+|||||+  |+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            36999999999999999  6543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.73  E-value=0.02  Score=43.52  Aligned_cols=16  Identities=31%  Similarity=0.110  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      ++.|+||.|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            5778899999999876

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.019  Score=42.64  Aligned_cols=17  Identities=12%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ..+.|.||+|+||+|++
T Consensus        25 h~lLl~Gp~G~GKtt~a   41 (207)
T d1a5ta2          25 HALLIQALPGMGDDALI   41 (207)
T ss_dssp             SEEEEECCTTSCHHHHH
T ss_pred             eEEEEECCCCCcHHHHH
Confidence            36999999999999999

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.60  E-value=0.013  Score=48.18  Aligned_cols=19  Identities=16%  Similarity=0.209  Sum_probs=15.8

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      ++|+||+|||||+|+  |...
T Consensus        46 ~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHH
Confidence            578999999999999  5543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.49  E-value=0.024  Score=37.71  Aligned_cols=18  Identities=17%  Similarity=-0.167  Sum_probs=15.3

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      ++.++|.+|+|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            347899999999999666

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.41  E-value=0.017  Score=45.16  Aligned_cols=19  Identities=26%  Similarity=0.212  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChhhhc--cccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~   81 (166)
                      |+|+|-+.||||||+  |...
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999  5443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.03  Score=42.78  Aligned_cols=18  Identities=17%  Similarity=0.270  Sum_probs=16.7

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      .++++|.||+++||||++
T Consensus        41 ~~~~iiTGpN~~GKSt~l   58 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYM   58 (234)
T ss_dssp             SCEEEEECCTTSSHHHHH
T ss_pred             ceEEEEeccCchhhHHHH
Confidence            468999999999999999

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.25  E-value=0.018  Score=44.48  Aligned_cols=19  Identities=37%  Similarity=0.321  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -|+++|...+|||||+  |+.
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHhC
Confidence            4889999999999999  554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.23  E-value=0.029  Score=43.97  Aligned_cols=23  Identities=22%  Similarity=0.017  Sum_probs=20.4

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |=+..++++-|.||+|+|||||+
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~   77 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVA   77 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHH
Confidence            45667889999999999999998

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.10  E-value=0.023  Score=44.42  Aligned_cols=17  Identities=29%  Similarity=0.255  Sum_probs=15.8

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      |-|+|+|+.|+|||||+
T Consensus         3 RNv~iiGh~~~GKTtL~   19 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLT   19 (267)
T ss_dssp             EEEEEEESTTSSHHHHH
T ss_pred             eEEEEEcCCCCcHHHHH
Confidence            36899999999999999

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.10  E-value=0.02  Score=45.63  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .+.++||+|+|||.|+ .++.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            5788999999999999 4443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.91  E-value=0.018  Score=45.36  Aligned_cols=15  Identities=20%  Similarity=0.153  Sum_probs=14.4

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      +.|+||.|+|||+|+
T Consensus        31 vLl~G~pG~GKT~la   45 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAV   45 (333)
T ss_dssp             EEEECCGGGCTTHHH
T ss_pred             EEEECCCCccHHHHH
Confidence            789999999999999

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.023  Score=45.72  Aligned_cols=20  Identities=25%  Similarity=0.198  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      =+.|+|+||||||+++  ++..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            3789999999999987  5544

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.68  E-value=0.028  Score=43.59  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      -|+++|...+|||||+  |++.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            4789999999999999  5543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.06  E-value=0.036  Score=43.28  Aligned_cols=23  Identities=22%  Similarity=-0.055  Sum_probs=20.4

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~   77 (166)
                      |=+..++++-|.||+|+|||+|.
T Consensus        52 GGip~g~itei~G~~~sGKT~l~   74 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLA   74 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHH
Confidence            45567889999999999999999

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.06  E-value=0.044  Score=41.59  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      ++++|.||+++||||++
T Consensus        36 ~~~iiTGpN~~GKSt~l   52 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFL   52 (224)
T ss_dssp             CEEEEESCSSSSHHHHH
T ss_pred             cEEEEECCCccccchhh
Confidence            48999999999999998

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.83  E-value=0.038  Score=43.43  Aligned_cols=17  Identities=24%  Similarity=-0.019  Sum_probs=15.9

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      |-|+|+|..|+|||||.
T Consensus         7 Rni~i~gh~~~GKTtL~   23 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTT   23 (276)
T ss_dssp             EEEEEEECTTSCHHHHH
T ss_pred             eEEEEEeCCCCCHHHHH
Confidence            46999999999999999

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=90.20  E-value=0.052  Score=39.35  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=19.4

Q ss_pred             CcEEEEEcCCCCChhhhc--ccccc
Q psy18088         60 FACILHVDFAMFGKTSFL--FLRTV   82 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~--Li~~~   82 (166)
                      +-+|.|.|+=||||||++  ++..+
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            338999999999999999  66654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.067  Score=40.34  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=17.9

Q ss_pred             cCCcEEEEEcCCCCChhhhc
Q psy18088         58 HFFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~   77 (166)
                      +++|+|.+.|.-|+||||+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTva   25 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSIS   25 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHH
Confidence            45779999999999999988

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.062  Score=43.43  Aligned_cols=18  Identities=17%  Similarity=-0.093  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      +++.+|.||.|+||||++
T Consensus       163 ~~~~vI~G~pGTGKTt~i  180 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTV  180 (359)
T ss_dssp             BSEEEEECCTTSTHHHHH
T ss_pred             CCeEEEEcCCCCCceehH
Confidence            569999999999999976

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=89.54  E-value=0.058  Score=38.72  Aligned_cols=29  Identities=14%  Similarity=0.202  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCC-Chhhhccccccccceee
Q psy18088         60 FACILHVDFAMF-GKTSFLFLRTVLDRFGF   88 (166)
Q Consensus        60 ~~~ivLiGPSGs-GKSTL~Li~~~~~~f~~   88 (166)
                      ++-|+|+|.+|| |++||-++..+|+.|..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v   31 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQV   31 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEE
Confidence            467999999999 99999977788876664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.08  Score=41.91  Aligned_cols=24  Identities=29%  Similarity=0.047  Sum_probs=19.7

Q ss_pred             ccCCcEEEEEcCCCCChhhhc--ccc
Q psy18088         57 IHFFACILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        57 ~~~~~~ivLiGPSGsGKSTL~--Li~   80 (166)
                      +-+|.-+.|+||+|+|||+|+  ++.
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            344668999999999999999  544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.22  E-value=0.097  Score=40.18  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE  101 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge  101 (166)
                      -++|||-+.||||||+  |....+.  ...-|.||-.|.-|-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~--~~~ypf~ti~pn~gv   43 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGV   43 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSE
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCc--cccCCCCCCCCceEE
Confidence            5899999999999999  4443321  223345676676664

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.75  E-value=0.099  Score=40.15  Aligned_cols=36  Identities=11%  Similarity=0.129  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCC
Q psy18088         62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPR   98 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~   98 (166)
                      -++|+|-+.||||||+  |+.... .-....|.+||...
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~~~-~~~~~~pG~Tr~~~  151 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ  151 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred             EEEEEecCccchhhhhhhhhccce-EEECCcccccccce
Confidence            5899999999999999  655432 34566777777543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.74  E-value=0.079  Score=42.46  Aligned_cols=20  Identities=15%  Similarity=0.175  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCChhhhc--cccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~~   81 (166)
                      .+++.||+|+|||.|+  |...
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4555799999999999  5554

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.66  E-value=0.1  Score=39.38  Aligned_cols=18  Identities=17%  Similarity=-0.203  Sum_probs=15.3

Q ss_pred             CCcEEEEEcCCCCChhhh
Q psy18088         59 FFACILHVDFAMFGKTSF   76 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL   76 (166)
                      +++.++|.+|+|+|||+.
T Consensus         8 ~~~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             TTCEEEECCCTTSSTTTT
T ss_pred             cCCcEEEEECCCCCHHHH
Confidence            455899999999999963

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.11  E-value=0.079  Score=39.13  Aligned_cols=17  Identities=18%  Similarity=0.270  Sum_probs=15.7

Q ss_pred             EEEEcCCCCChhhhc--cc
Q psy18088         63 ILHVDFAMFGKTSFL--FL   79 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li   79 (166)
                      |+|+|..++|||||+  |+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            899999999999999  54

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.11  Score=38.98  Aligned_cols=19  Identities=21%  Similarity=0.170  Sum_probs=17.0

Q ss_pred             CCcEEEEEcCCCCChhhhc
Q psy18088         59 FFACILHVDFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLiGPSGsGKSTL~   77 (166)
                      ..++|++.|--|+||||+.
T Consensus        19 ~~~iii~sGKGGVGKTT~a   37 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMA   37 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            3568999999999999997

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.32  E-value=0.11  Score=39.15  Aligned_cols=17  Identities=12%  Similarity=-0.003  Sum_probs=15.6

Q ss_pred             cEEEEEcCCCCChhhhc
Q psy18088         61 ACILHVDFAMFGKTSFL   77 (166)
Q Consensus        61 ~~ivLiGPSGsGKSTL~   77 (166)
                      |.|+|.|.-|+||||+.
T Consensus         2 r~Iai~gKGGvGKTT~a   18 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTT   18 (269)
T ss_dssp             EEEEEEECTTSSHHHHH
T ss_pred             CEEEEECCCcCCHHHHH
Confidence            47889999999999999

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.12  E-value=0.14  Score=37.04  Aligned_cols=19  Identities=26%  Similarity=0.037  Sum_probs=16.3

Q ss_pred             CCcEEEEE-cCCCCChhhhc
Q psy18088         59 FFACILHV-DFAMFGKTSFL   77 (166)
Q Consensus        59 ~~~~ivLi-GPSGsGKSTL~   77 (166)
                      ++|+|++. +-.|+||||+.
T Consensus         1 m~~vIav~~~kGGvGKTtia   20 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVT   20 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHH
T ss_pred             CCeEEEEECCCCCCcHHHHH
Confidence            46788888 66899999999

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=87.12  E-value=0.089  Score=39.75  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             cCCcEEEEEcCCCCChhhhc--cccccccceeeeEEee
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHT   93 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~T   93 (166)
                      ++...++|.||.++|||.++  |+..+.   +.+++++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~vis~~   85 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAVISFV   85 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT---CEECCCC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC---CEEEecc
Confidence            45679999999999999999  665543   3445544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.12  E-value=0.14  Score=39.66  Aligned_cols=27  Identities=19%  Similarity=0.050  Sum_probs=21.5

Q ss_pred             ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088         55 GRIHFFACILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        55 ~~~~~~~~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      +.+.+..++.|.||.+.|||+++ ++..
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34455679999999999999999 5544

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.46  E-value=0.096  Score=42.04  Aligned_cols=20  Identities=20%  Similarity=0.074  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|=|+-||||||++ ++..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC
T ss_pred             EEEEECCcCCCHHHHHHHHHH
Confidence            4889999999999999 5543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.51  E-value=0.14  Score=36.51  Aligned_cols=15  Identities=33%  Similarity=0.122  Sum_probs=12.5

Q ss_pred             EEEEcCCCCChhhhc
Q psy18088         63 ILHVDFAMFGKTSFL   77 (166)
Q Consensus        63 ivLiGPSGsGKSTL~   77 (166)
                      ++|++|+|+|||.+.
T Consensus        26 ~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIA   40 (200)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             eEEEeCCCCcHHHHH
Confidence            457899999999765

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=85.38  E-value=0.16  Score=40.65  Aligned_cols=20  Identities=15%  Similarity=0.044  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|=|+-||||||++ .+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEECCccCCHHHHHHHHHH
Confidence            5889999999999999 5444

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.37  E-value=0.14  Score=38.99  Aligned_cols=19  Identities=16%  Similarity=0.155  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChhhhc-ccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~   80 (166)
                      +|.|.|+.|+||++++ .+-
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHH
Confidence            6899999999999999 553

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.20  E-value=0.18  Score=40.26  Aligned_cols=20  Identities=20%  Similarity=-0.064  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChhhhc-cccc
Q psy18088         62 CILHVDFAMFGKTSFL-FLRT   81 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~-Li~~   81 (166)
                      .|+|=|+-||||||++ .+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999 5544

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.81  E-value=0.079  Score=38.33  Aligned_cols=16  Identities=25%  Similarity=0.106  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      =++|.+|+|+|||++.
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            4789999999999875

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.58  E-value=0.09  Score=38.99  Aligned_cols=18  Identities=28%  Similarity=0.113  Sum_probs=15.1

Q ss_pred             CcEEEEEcCCCCChhhhc
Q psy18088         60 FACILHVDFAMFGKTSFL   77 (166)
Q Consensus        60 ~~~ivLiGPSGsGKSTL~   77 (166)
                      |+-++|++|+|+|||+..
T Consensus        58 g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TCCEECCCCBTSCSHHHH
T ss_pred             CCCEEEEecCCChHHHHH
Confidence            446888999999999766

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.86  E-value=0.2  Score=35.95  Aligned_cols=19  Identities=26%  Similarity=0.196  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCChhhhc--ccc
Q psy18088         62 CILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~--Li~   80 (166)
                      =|+|+|--.+|||||+  |+.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            3799999999999999  653

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=0.18  Score=36.12  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             EEEEEcCCCC-Chhhhccccccccceeee
Q psy18088         62 CILHVDFAMF-GKTSFLFLRTVLDRFGFS   89 (166)
Q Consensus        62 ~ivLiGPSGs-GKSTL~Li~~~~~~f~~~   89 (166)
                      -|+|+|.+|| |++||-++..+|+.|...
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~   31 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVV   31 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEE
Confidence            4899999999 999999778888877653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.25  E-value=0.23  Score=38.81  Aligned_cols=23  Identities=22%  Similarity=0.021  Sum_probs=19.1

Q ss_pred             cCCcEEEEEcCCCCChhhhc--ccc
Q psy18088         58 HFFACILHVDFAMFGKTSFL--FLR   80 (166)
Q Consensus        58 ~~~~~ivLiGPSGsGKSTL~--Li~   80 (166)
                      -+|.-+.|+|++|+|||+|+  ++.
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            34668999999999999998  543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.00  E-value=0.26  Score=39.35  Aligned_cols=16  Identities=19%  Similarity=0.256  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +.++.|.||.|||||-
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            7899999999999987

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.85  E-value=0.27  Score=39.18  Aligned_cols=16  Identities=19%  Similarity=0.256  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      +.++.|.||.|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            6789999999999987

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.44  E-value=0.26  Score=34.85  Aligned_cols=22  Identities=18%  Similarity=0.116  Sum_probs=16.9

Q ss_pred             cEEEEEcCC-CCChhhhc--ccccc
Q psy18088         61 ACILHVDFA-MFGKTSFL--FLRTV   82 (166)
Q Consensus        61 ~~ivLiGPS-GsGKSTL~--Li~~~   82 (166)
                      |-+.|.|-. ||||||+.  |...+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            457889995 99999999  44443

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.41  Score=38.83  Aligned_cols=25  Identities=12%  Similarity=-0.045  Sum_probs=19.9

Q ss_pred             CcEEEEEc--CCCCChhhhc-ccccccc
Q psy18088         60 FACILHVD--FAMFGKTSFL-FLRTVLD   84 (166)
Q Consensus        60 ~~~ivLiG--PSGsGKSTL~-Li~~~~~   84 (166)
                      ++...|.|  ||+||||+|. |...+|+
T Consensus        16 g~~~yvaaAFPSaCGKTnlAMl~p~~pG   43 (363)
T d1khba1          16 GEKKYLAAAFPSACGKTNLAMMNPSLPG   43 (363)
T ss_dssp             SCEEEEEEECCTTSCHHHHHTCCCCSTT
T ss_pred             CCEEEEEEecCccccchhHHHhCCCCCC
Confidence            55777777  9999999999 8766554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.20  E-value=0.36  Score=35.25  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChhhhc--cccccc
Q psy18088         63 ILHVDFAMFGKTSFL--FLRTVL   83 (166)
Q Consensus        63 ivLiGPSGsGKSTL~--Li~~~~   83 (166)
                      +.|+|++.||||..+  |+...+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCS
T ss_pred             EEEECCCCccHHHHHHHHHhcCC
Confidence            689999999999999  765544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.06  E-value=0.36  Score=36.54  Aligned_cols=16  Identities=13%  Similarity=-0.078  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCChhhhc
Q psy18088         62 CILHVDFAMFGKTSFL   77 (166)
Q Consensus        62 ~ivLiGPSGsGKSTL~   77 (166)
                      .|+|.|--|+||||+.
T Consensus         4 ~IaisgKGGVGKTT~a   19 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTT   19 (289)
T ss_dssp             EEEEEECTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5678999999999988