Psyllid ID: psy18106

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MSSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEccccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHccccccEEEEEEEccccccEEEEEccccccccEEEEEEEcccccccccccEEEccEEEcc
Coil and Loop (DISEMBL)
mssfgnfssdkvkkkygslgpdLVVVTLERShtglgislaghkdrtKMAVFVCglnpsgsasktgsvlvgdellei
Flexible Loop (DISEMBL)
mssfgnfssdkvkkkygslgPDLVVVTLERSHTGLgislaghkdrTKMAVFVCGLnpsgsasktgsvlvgdellei
Low Complexity Region (SEG)
MSSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Disordered region (IsUnstruct)
****************GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLN********************
Disordered Region (DISOPRED)
**SFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Disordered Region (DISEMBL)
**********KVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Disordered Region (DISPRO)
***FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
O75970	2070	Multiple PDZ domain prote	yes	N/A	0.947	0.034	0.479	3e-15
O55164	2054	Multiple PDZ domain prote	yes	N/A	0.947	0.035	0.479	3e-15
Q8NI35	1801	InaD-like protein OS=Homo	no	N/A	0.868	0.036	0.471	2e-14
Q8VBX6	2055	Multiple PDZ domain prote	yes	N/A	0.881	0.032	0.485	5e-14
Q63ZW7	1834	InaD-like protein OS=Mus	no	N/A	0.921	0.038	0.457	1e-13
Q24008	674	Inactivation-no-after-pot	yes	N/A	0.894	0.100	0.421	2e-06

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 4    FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
            FG +S   ++++YG+L  +L ++ LE+ H+GLG+SLAG+KDR++M+VF+ G++P+G+A K
Sbjct: 1330 FG-YSWKNIRERYGTLTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGK 1388

Query: 64   TGSVLVGDELLEI 76
             G + + DELLEI
Sbjct: 1389 DGRLQIADELLEI 1401

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.
Homo sapiens (taxid: 9606)

>sp|O55164|MPDZ_RAT Multiple PDZ domain protein OS=Rattus norvegicus GN=Mpdz PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 4    FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
            FG +S   ++++YG+L   L ++ LE+ H+GLG+SLAG+KDRT+M+VF+ G++P+G+A +
Sbjct: 1317 FG-YSWKNIQERYGTLTGQLHMIELEKGHSGLGLSLAGNKDRTRMSVFIVGIDPTGAAGR 1375

Query: 64   TGSVLVGDELLEI 76
             G + + DELLEI
Sbjct: 1376 DGRLQIADELLEI 1388

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 52/70 (74%)

Query: 7    FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
            F+  K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G 
Sbjct: 1221 FTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 1280

Query: 67   VLVGDELLEI 76
            + +GDELLEI
Sbjct: 1281 MRIGDELLEI 1290

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Homo sapiens (taxid: 9606)

>sp|Q8VBX6|MPDZ_MOUSE Multiple PDZ domain protein OS=Mus musculus GN=Mpdz PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 54/70 (77%)

Query: 7    FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
            +S   ++++YGSL   L V+ LE+  +GLG+SLAG+KDRT+M+VF+ G++P+G+A + G 
Sbjct: 1320 YSWKNIQERYGSLTGQLHVIELEKGQSGLGLSLAGNKDRTRMSVFIVGIDPTGAAGRDGR 1379

Query: 67   VLVGDELLEI 76
            + + DELLEI
Sbjct: 1380 LQIADELLEI 1389

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q63ZW7|INADL_MOUSE InaD-like protein OS=Mus musculus GN=Inadl PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 51/70 (72%)

Query: 7    FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
             +  K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G 
Sbjct: 1227 LTDKKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 1286

Query: 67   VLVGDELLEI 76
            + +GDELLEI
Sbjct: 1287 MRIGDELLEI 1296

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Mus musculus (taxid: 10090)

>sp|Q24008|INAD_DROME Inactivation-no-after-potential D protein OS=Drosophila melanogaster GN=inaD PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 8/76 (10%)

Query: 4   FGNFSSDKVKKKYGSLGPDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSAS 62
           FG ++  K+ K+Y  +  DL  + ++R  +  LG++LAGHKDR KMA FV G++P+G+  
Sbjct: 230 FG-YTMAKINKRYNMM-KDLRRIEVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGA-- 285

Query: 63  KTGSVLV--GDELLEI 76
             GSV +  GDE++E+
Sbjct: 286 -LGSVDIKPGDEIVEV 300

Involved in the negative feedback regulation of the light-activated signaling cascade in photoreceptors through a calcium-mediated process. Interacts with tetrapeptide ligand located in C-terminal sequence of 3 key components of the visual cascade, tethering them and forming a macromolecular signaling phototransduction complex.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242021699	560	Inactivation-no-after-potential D protei	0.960	0.130	0.657	6e-21
189239282	723	PREDICTED: similar to AGAP002145-PA [Tri	0.947	0.099	0.643	1e-19
270010410	482	hypothetical protein TcasGA2_TC009802 [T	0.868	0.136	0.681	1e-18
350409834	1692	PREDICTED: hypothetical protein LOC10074	0.947	0.042	0.616	2e-18
380028134	740	PREDICTED: multiple PDZ domain protein-l	0.960	0.098	0.594	3e-18
340718529	2578	PREDICTED: hypothetical protein LOC10064	0.934	0.027	0.625	7e-18
345492877	1279	PREDICTED: hypothetical protein LOC10011	0.960	0.057	0.608	2e-17
328781287	1701	PREDICTED: hypothetical protein LOC40902	0.921	0.041	0.6	3e-17
357619873	82	putative Inactivation-no-after- D protei	0.947	0.878	0.602	5e-17
307168151	1622	Inactivation-no-after-potential D protei	0.921	0.043	0.557	5e-17

>gi|242021699|ref|XP_002431281.1| Inactivation-no-after-potential D protein, putative [Pediculus humanus corporis] gi|212516538|gb|EEB18543.1| Inactivation-no-after-potential D protein, putative [Pediculus humanus corporis]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 60/73 (82%)

Query: 4  FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
          F   +S KVKKKYG+LG  ++V+ LE+SH GLGISLAGHKDR +MAVFVCG+NP+G A K
Sbjct: 24 FKKNTSRKVKKKYGNLGDTILVINLEKSHRGLGISLAGHKDRNRMAVFVCGINPNGPAFK 83

Query: 64 TGSVLVGDELLEI 76
          TG + VGDE+LE+
Sbjct: 84 TGGIKVGDEILEV 96

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239282|ref|XP_001810643.1| PREDICTED: similar to AGAP002145-PA [Tribolium castaneum]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 4   FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
           FG ++++KVKKKY SLG  +++V LERS  GLG+SLAGHKDR  MAVFVCGLNP+G+A K
Sbjct: 264 FG-YTTNKVKKKYASLGHTILMVQLERSSQGLGLSLAGHKDRNCMAVFVCGLNPNGAAYK 322

Query: 64  TGSVLVGDELLEI 76
           TG + +GDE+LE+
Sbjct: 323 TGGIQIGDEILEV 335

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010410|gb|EFA06858.1| hypothetical protein TcasGA2_TC009802 [Tribolium castaneum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query: 11 KVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVG 70
          KVKKKY SLG  +++V LERS  GLG+SLAGHKDR  MAVFVCGLNP+G+A KTG + +G
Sbjct: 10 KVKKKYASLGHTILMVQLERSSQGLGLSLAGHKDRNCMAVFVCGLNPNGAAYKTGGIQIG 69

Query: 71 DELLEI 76
          DE+LE+
Sbjct: 70 DEILEV 75

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409834|ref|XP_003488859.1| PREDICTED: hypothetical protein LOC100743377 [Bombus impatiens]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 4    FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
            FG +++ KV+KKY SLG  +++V +E+   GLGISLAGH+DR +MAVFVCGLNP G+A K
Sbjct: 1248 FG-YTNMKVQKKYHSLGHKVLLVKIEKDRRGLGISLAGHRDRNRMAVFVCGLNPKGAAHK 1306

Query: 64   TGSVLVGDELLEI 76
            TG +LVGDE+LE+
Sbjct: 1307 TGEILVGDEILEV 1319

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028134|ref|XP_003697764.1| PREDICTED: multiple PDZ domain protein-like [Apis florea]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 59/74 (79%), Gaps = 1/74 (1%)

Query: 3   SFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSAS 62
            FG +++ K++KKY SLG  +++V +E+   GLGISLAGHKDR +MAVFVCGLNP G+A 
Sbjct: 294 EFG-YTNMKIQKKYHSLGHKVILVQVEKDRRGLGISLAGHKDRNRMAVFVCGLNPKGAAH 352

Query: 63  KTGSVLVGDELLEI 76
           KTG + VGDE+LE+
Sbjct: 353 KTGEISVGDEILEV 366

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718529|ref|XP_003397718.1| PREDICTED: hypothetical protein LOC100647267 [Bombus terrestris]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 59/72 (81%), Gaps = 1/72 (1%)

Query: 4    FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
            FG +++ KV+KKY SLG  +++V +E+   GLGISLAGH+DR +MAVFVCGLNP G+A K
Sbjct: 2205 FG-YTNMKVQKKYHSLGHKVMLVKIEKDRRGLGISLAGHRDRNRMAVFVCGLNPKGAAHK 2263

Query: 64   TGSVLVGDELLE 75
            TG +LVGDE+LE
Sbjct: 2264 TGEILVGDEILE 2275

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492877|ref|XP_003426946.1| PREDICTED: hypothetical protein LOC100114281 [Nasonia vitripennis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 3   SFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSAS 62
            FG ++  KVKKKY  L   ++ VTLE+   GLGISLAGHKDR KMAVF+CG+NPSG A+
Sbjct: 835 EFG-YTLSKVKKKYHFLKKPVLFVTLEKDRRGLGISLAGHKDRNKMAVFICGINPSGVAA 893

Query: 63  KTGSVLVGDELLEI 76
           K G + +GDELLE+
Sbjct: 894 KDGQLQIGDELLEV 907

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781287|ref|XP_392550.4| PREDICTED: hypothetical protein LOC409020 [Apis mellifera]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 7    FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
            +++ K++KKY SLG  +++V +E+   GLGISLAGHKDR +MAVFVCGLNP G+A KTG 
Sbjct: 1258 YTNMKIQKKYQSLGHKVILVQVEKDRRGLGISLAGHKDRNRMAVFVCGLNPKGAAHKTGE 1317

Query: 67   VLVGDELLEI 76
            + VGDE+LE+
Sbjct: 1318 ISVGDEILEV 1327

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619873|gb|EHJ72279.1| putative Inactivation-no-after- D protein [Danaus plexippus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 63/78 (80%), Gaps = 6/78 (7%)

Query: 5  GNFS----SDKVKKKYGSLGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSG 59
          GN S    S+K+KKKYGSLG  +VVV LER+   GLG+SLAGH+DR++MAVF+CGLNP+G
Sbjct: 4  GNLSIKNHSNKIKKKYGSLGDSVVVVKLERTPKAGLGLSLAGHRDRSRMAVFICGLNPAG 63

Query: 60 SASKTG-SVLVGDELLEI 76
          +A+K+   + VGDE+LE+
Sbjct: 64 AAAKSSPPIKVGDEILEV 81

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168151|gb|EFN61430.1| Inactivation-no-after-potential D protein [Camponotus floridanus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 56/70 (80%)

Query: 7    FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
            ++  K++KKY +LG  ++++ LE+   GLGISLAGHKDR +MAVF+CGLNP G+A K G 
Sbjct: 1240 YTIKKIQKKYQNLGHKVLMIVLEKDRRGLGISLAGHKDRNRMAVFICGLNPKGAAHKNGG 1299

Query: 67   VLVGDELLEI 76
            +L+GDE+LE+
Sbjct: 1300 LLIGDEILEV 1309

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
UNIPROTKB|F1N9G0	1999	F1N9G0 "Uncharacterized protei	0.973	0.037	0.506	4e-14
UNIPROTKB|O75970	2070	MPDZ "Multiple PDZ domain prot	0.947	0.034	0.479	8.7e-14
RGD|3105	2054	Mpdz "multiple PDZ domain prot	0.947	0.035	0.479	1.4e-13
UNIPROTKB|D4A2W4	2068	Mpdz "Multiple PDZ domain prot	0.947	0.034	0.479	1.4e-13
MGI|MGI:1343489	2055	Mpdz "multiple PDZ domain prot	0.947	0.035	0.493	2.3e-13
UNIPROTKB|E1BLF1	1794	Bt.110063 "Uncharacterized pro	0.921	0.039	0.471	3.2e-13
UNIPROTKB|Q8NI35	1801	INADL "InaD-like protein" [Hom	0.921	0.038	0.471	3.2e-13
UNIPROTKB|F1SMP5	1588	MPDZ "Uncharacterized protein"	0.947	0.045	0.465	4.5e-13
UNIPROTKB|F1MMT3	2056	F1MMT3 "Uncharacterized protei	0.947	0.035	0.465	4.8e-13
UNIPROTKB|F1MAD2	1833	Inadl2 "Protein Inadl2" [Rattu	0.868	0.036	0.5	1.4e-12

UNIPROTKB|F1N9G0 F1N9G0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 38/75 (50%), Positives = 58/75 (77%)

Query:     2 SSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSA 61
             + FG +S  K+ ++YGSL  +L ++ LE+  TGLG+SLAG+KDR++M+VFV G++P+G+A
Sbjct:  1333 NEFG-YSWKKITQRYGSLPGELHMIELEKGRTGLGLSLAGNKDRSRMSVFVVGIDPNGAA 1391

Query:    62 SKTGSVLVGDELLEI 76
              K G + + DELLEI
Sbjct:  1392 GKDGRLQIADELLEI 1406

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|O75970 MPDZ "Multiple PDZ domain protein" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 35/73 (47%), Positives = 58/73 (79%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YG+L  +L ++ LE+ H+GLG+SLAG+KDR++M+VF+ G++P+G+A K
Sbjct:  1330 FG-YSWKNIRERYGTLTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGK 1388

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:  1389 DGRLQIADELLEI 1401

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

RGD|3105 Mpdz "multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 35/73 (47%), Positives = 57/73 (78%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YG+L   L ++ LE+ H+GLG+SLAG+KDRT+M+VF+ G++P+G+A +
Sbjct:  1317 FG-YSWKNIQERYGTLTGQLHMIELEKGHSGLGLSLAGNKDRTRMSVFIVGIDPTGAAGR 1375

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:  1376 DGRLQIADELLEI 1388

GO:0005737 "cytoplasm" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016327 "apicolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0042552 "myelination" evidence=IPI

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|D4A2W4 Mpdz "Multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 35/73 (47%), Positives = 57/73 (78%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YG+L   L ++ LE+ H+GLG+SLAG+KDRT+M+VF+ G++P+G+A +
Sbjct:  1331 FG-YSWKNIQERYGTLTGQLHMIELEKGHSGLGLSLAGNKDRTRMSVFIVGIDPTGAAGR 1389

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:  1390 DGRLQIADELLEI 1402

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

MGI|MGI:1343489 Mpdz "multiple PDZ domain protein" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 36/73 (49%), Positives = 56/73 (76%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YGSL   L V+ LE+  +GLG+SLAG+KDRT+M+VF+ G++P+G+A +
Sbjct:  1318 FG-YSWKNIQERYGSLTGQLHVIELEKGQSGLGLSLAGNKDRTRMSVFIVGIDPTGAAGR 1376

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:  1377 DGRLQIADELLEI 1389

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0042552 "myelination" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|E1BLF1 Bt.110063 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 33/70 (47%), Positives = 53/70 (75%)

Query:     7 FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
             F++ K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G 
Sbjct:  1227 FTNKKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAMDGR 1286

Query:    67 VLVGDELLEI 76
             + +GDELLEI
Sbjct:  1287 MRIGDELLEI 1296

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|Q8NI35 INADL "InaD-like protein" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 33/70 (47%), Positives = 52/70 (74%)

Query:     7 FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
             F+  K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G 
Sbjct:  1221 FTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 1280

Query:    67 VLVGDELLEI 76
             + +GDELLEI
Sbjct:  1281 MRIGDELLEI 1290

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005923 "tight junction" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

UNIPROTKB|F1SMP5 MPDZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 187 (70.9 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 34/73 (46%), Positives = 57/73 (78%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YG+L  +L ++ LE+  +GLG+SLAG+KDR++M+VF+ G++P+G+A K
Sbjct:   877 FG-YSWKSIRERYGTLTGELHMIELEKGRSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGK 935

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:   936 DGRLQIADELLEI 948

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1MMT3 F1MMT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 34/73 (46%), Positives = 57/73 (78%)

Query:     4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASK 63
             FG +S   ++++YG+L  +L ++ LE+  +GLG+SLAG+KDR++M+VF+ G++P+G+A K
Sbjct:  1345 FG-YSWKNIRERYGTLTGELHMIELEKGRSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGK 1403

Query:    64 TGSVLVGDELLEI 76
              G + + DELLEI
Sbjct:  1404 DGQLQIADELLEI 1416

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1MAD2 Inadl2 "Protein Inadl2" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 33/66 (50%), Positives = 50/66 (75%)

Query:    11 KVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVG 70
             K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G + VG
Sbjct:  1230 KIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPDGPAAADGRMRVG 1289

Query:    71 DELLEI 76
             DELLEI
Sbjct:  1290 DELLEI 1295

GO:0005923 "tight junction" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-06
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-06

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +V LE+   GLG SL G KD     V V  + P   A+K G + VGD +LE+
Sbjct: 2  PRLVELEKGGGGLGFSLVGGKD-EGGGVVVSSVVPGSPAAKAG-LRVGDVILEV 53

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 23 LVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +  VTL +    GLG SL G KD     +FV  + P G A + G + VGD +LE+
Sbjct: 1  VRTVTLRKDPGGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGG-LRVGDRILEV 53

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG3550|consensus	207		99.39
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.28
KOG3209|consensus	984		99.25
KOG1892|consensus	1629		99.12
KOG3209|consensus	984		98.96
KOG3571|consensus	626		98.83
KOG3580|consensus	1027		98.73
KOG3651|consensus	429		98.69
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.66
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.65
KOG3551|consensus	506		98.65
KOG3553|consensus	124		98.61
KOG3549|consensus	505		98.59
KOG3580|consensus	1027		98.46
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.29
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.05
KOG3606|consensus	358		98.01
KOG0609|consensus	542		97.67
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.66
KOG3542|consensus	1283		97.57
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.45
KOG3552|consensus	1298		97.31
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.23
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.17
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.15
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	96.86
PLN00049	389	carboxyl-terminal processing protease; Provisional	96.84
PRK11186	667	carboxy-terminal protease; Provisional	96.83
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	96.71
KOG3605|consensus	829		96.62
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	96.57
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.46
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.04
KOG3605|consensus	829		95.74
KOG3129|consensus	231		95.69
PRK10139	455	serine endoprotease; Provisional	95.62
PRK10139	455	serine endoprotease; Provisional	95.3
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.26
PRK10898	353	serine endoprotease; Provisional	95.2
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.16
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.02
PRK10942	473	serine endoprotease; Provisional	95.01
KOG3938|consensus	334		94.87
PRK10779	449	zinc metallopeptidase RseP; Provisional	94.64
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	94.54
PRK10942	473	serine endoprotease; Provisional	94.4
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	93.89
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	93.42
COG3975	558	Predicted protease with the C-terminal PDZ domain	93.35
KOG1738|consensus	638		89.81
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	89.35
KOG4371|consensus	1332		87.74
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	81.97

>KOG3550|consensus

Probab=99.39  E-value=4.4e-13  Score=90.33  Aligned_cols=54  Identities=30%  Similarity=0.628  Sum_probs=50.4

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.|+|.|...||||.++||++. +.+|||++|+|||.|++-|.|+.||++|.|
T Consensus        90 hprvvelpktdeglgfnvmggkeq-nspiyisriipggvadrhgglkrgdqllsv  143 (207)
T KOG3550|consen   90 HPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSV  143 (207)
T ss_pred             CCceeecCccccccceeeccCccc-CCceEEEeecCCccccccCcccccceeEee
Confidence            357899999999999999999996 789999999999999999999999999976

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.28  E-value=6.4e-12  Score=73.69  Aligned_cols=51  Identities=41%  Similarity=0.687  Sum_probs=45.9

Q ss_pred             EEEEec-CCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k-~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +|+|.| ...+|||++.++.+....++||+.|.|++||+++| |++||+|++|
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~I   52 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEI   52 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhhee
Confidence            478888 48899999999998544799999999999999999 9999999986

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3209|consensus

Probab=99.25  E-value=1.1e-11  Score=97.96  Aligned_cols=56  Identities=39%  Similarity=0.660  Sum_probs=52.6

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.+|+|+|+.+||||||.||++. .+++||-++.++|||.+||||++||+|+||
T Consensus       896 n~~~~~VelErG~kGFGFSiRGGrey-nM~LfVLRlAeDGPA~rdGrm~VGDqi~eI  951 (984)
T KOG3209|consen  896 NGDLYTVELERGAKGFGFSIRGGREY-NMDLFVLRLAEDGPAIRDGRMRVGDQITEI  951 (984)
T ss_pred             cCCeeEEEeeccccccceEeeccccc-ccceEEEEeccCCCccccCceeecceEEEe
Confidence            45688999999999999999999886 799999999999999999999999999986

>KOG1892|consensus

Probab=99.12  E-value=1e-10  Score=94.97  Aligned_cols=55  Identities=31%  Similarity=0.702  Sum_probs=49.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCC--CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~--~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .|+.+|+|.|+ +|+|+||+..++  ...++|||++|.+||+|+.||||+.||+||.|
T Consensus       932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsV  988 (1629)
T KOG1892|consen  932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSV  988 (1629)
T ss_pred             CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeee
Confidence            46899999998 899999987766  34789999999999999999999999999986

>KOG3209|consensus

Probab=98.96  E-value=1.2e-09  Score=86.57  Aligned_cols=58  Identities=28%  Similarity=0.453  Sum_probs=53.8

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+++..++|.|+..||||+|.||.+ .++..+-|++|.++|||++||+|.+||.|+.|
T Consensus       341 lkG~~ist~LvKg~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~I  399 (984)
T KOG3209|consen  341 LKGELISTKLVKGYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHI  399 (984)
T ss_pred             hCCeEEEEEEeecccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEE
Confidence            56789999999999999999999997 56889999999999999999999999999875

>KOG3571|consensus

Probab=98.83  E-value=8e-09  Score=79.53  Aligned_cols=58  Identities=26%  Similarity=0.492  Sum_probs=49.9

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.-++.+|.|.-. -+=|||||+|... ..+.+|||..|.++|+.+.||||.+||.||+|
T Consensus       246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQV  305 (626)
T KOG3571|consen  246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQV  305 (626)
T ss_pred             cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEe
Confidence            3446788888655 5669999999876 45889999999999999999999999999997

>KOG3580|consensus

Probab=98.73  E-value=1.7e-08  Score=79.51  Aligned_cols=53  Identities=25%  Similarity=0.557  Sum_probs=47.9

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCC-----CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTK-----MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~-----~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |.++++|.|+ ..||||.|.||+|++.     ..|+|+.|.|||||+  |+||.+|+|+.|
T Consensus         8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMV   66 (1027)
T KOG3580|consen    8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMV   66 (1027)
T ss_pred             hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEE
Confidence            5689999999 7899999999999754     399999999999997  899999999875

>KOG3651|consensus

Probab=98.69  E-value=3.4e-08  Score=72.75  Aligned_cols=52  Identities=23%  Similarity=0.416  Sum_probs=46.9

Q ss_pred             EEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      -+|+|.|+ .+=+||||-||... ++.+||.+|+.+.||++||+++.||+|+.|
T Consensus         6 ~~v~ltKD~~nliGISIGGGapy-CPClYiVQvFD~tPAa~dG~i~~GDEi~av   58 (429)
T KOG3651|consen    6 ETVELTKDEKNLIGISIGGGAPY-CPCLYIVQVFDKTPAAKDGRIRCGDEIVAV   58 (429)
T ss_pred             CcEEEeeccccceeEEecCCCCc-CCeEEEEEeccCCchhccCccccCCeeEEe
Confidence            46899999 55669999999875 899999999999999999999999999975

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.66  E-value=1.3e-07  Score=54.49  Aligned_cols=51  Identities=43%  Similarity=0.735  Sum_probs=43.9

Q ss_pred             EEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|.+. ..+|||++.++.+. ..+++|..|.++++|++ ..|++||+|++|
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~-~gl~~GD~I~~i   53 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDS-GGGIFVSRVEPGGPAER-GGLRVGDRILEV   53 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccC-CCCeEEEEECCCChHHh-CCCCCCCEEEEE
Confidence            46788887 78999999987653 46899999999999999 669999999985

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.65  E-value=1.6e-07  Score=54.07  Aligned_cols=52  Identities=42%  Similarity=0.632  Sum_probs=43.5

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+++.|....|||++...... ..+++|..|.++++|++.| |++||+|++|
T Consensus         2 ~~~~~~~~~~~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~I   53 (85)
T smart00228        2 PRLVELEKGGGGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEV   53 (85)
T ss_pred             cEEEEEEECCCcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            35678888778999999876542 2689999999999999988 9999999975

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3551|consensus

Probab=98.65  E-value=2.3e-08  Score=75.33  Aligned_cols=53  Identities=28%  Similarity=0.547  Sum_probs=49.1

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|++.|. .+||||||.||+++ +++|.|++|++|=+|++.+.|..||.||.|
T Consensus        85 ~R~V~V~K~d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSV  138 (506)
T KOG3551|consen   85 ERRVRVVKQDAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSV  138 (506)
T ss_pred             cceeEEEEecCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEe
Confidence            367888887 78999999999996 899999999999999999999999999986

>KOG3553|consensus

Probab=98.61  E-value=1e-07  Score=60.43  Aligned_cols=51  Identities=25%  Similarity=0.523  Sum_probs=42.5

Q ss_pred             EEEEecCC----Cc-----ccEEEecCCCC---------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLERSH----TG-----LGISLAGHKDR---------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k~~----~g-----LG~si~Gg~~~---------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .|+|.|..    .|     +||+|-||.|.         ++.+|||.+|.+|+||+..| |+.+|.||+|
T Consensus        18 ~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQv   86 (124)
T KOG3553|consen   18 RVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQV   86 (124)
T ss_pred             EEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEe
Confidence            46666552    34     79999999983         35799999999999999976 9999999986

>KOG3549|consensus

Probab=98.59  E-value=5.7e-08  Score=72.66  Aligned_cols=55  Identities=29%  Similarity=0.551  Sum_probs=50.6

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|+|.|. -+|||+||.||.++ +.+|.|++|..+-+|+..|.|.+||.||+|
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqv  108 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQV  108 (505)
T ss_pred             CCceeEEEEeeecCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEe
Confidence            35688999888 78999999999995 799999999999999999999999999986

>KOG3580|consensus

Probab=98.46  E-value=3.4e-07  Score=72.41  Aligned_cols=59  Identities=29%  Similarity=0.616  Sum_probs=48.6

Q ss_pred             hhhhcCCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         12 VKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        12 ~~~~~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+..|... +..+.|.+.|+ ...|+.++||.|   .+|||+.|..++||+.+| |+.||+||.|
T Consensus       398 ~m~~ygys-P~tk~VrF~KG-dSvGLRLAGGND---VGIFVaGvqegspA~~eG-lqEGDQIL~V  456 (1027)
T KOG3580|consen  398 DMAIYGYS-PNTKMVRFKKG-DSVGLRLAGGND---VGIFVAGVQEGSPAEQEG-LQEGDQILKV  456 (1027)
T ss_pred             HHHHhcCC-CCceeEEeecC-CeeeeEeccCCc---eeEEEeecccCCchhhcc-ccccceeEEe
Confidence            34444433 34677888875 799999999986   799999999999999987 9999999986

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.29  E-value=1.8e-06  Score=48.62  Aligned_cols=39  Identities=31%  Similarity=0.605  Sum_probs=33.9

Q ss_pred             cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +|||++.+..+   .+++|..|.+++||++ ..|++||+|++|
T Consensus         2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~-~gl~~GD~I~~I   40 (70)
T cd00136           2 GLGFSIRGGTE---GGVVVLSVEPGSPAER-AGLQAGDVILAV   40 (70)
T ss_pred             CccEEEecCCC---CCEEEEEeCCCCHHHH-cCCCCCCEEEEE
Confidence            68999987764   5799999999999998 459999999985

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.05  E-value=6.8e-06  Score=48.18  Aligned_cols=40  Identities=35%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .||+++..-.+  ..+++|..|.+++||++.| |++||.|++|
T Consensus         2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   41 (82)
T PF13180_consen    2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAI   41 (82)
T ss_dssp             E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEE
T ss_pred             EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEE
Confidence            57888775544  4689999999999999987 9999999975

...

>KOG3606|consensus

Probab=98.01  E-value=5.5e-06  Score=60.38  Aligned_cols=53  Identities=30%  Similarity=0.470  Sum_probs=45.9

Q ss_pred             EEEEEecC--CCcccEEEecCCC--------CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS--HTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~--~~gLG~si~Gg~~--------~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.|.|.|-  .++|||-|.-|..        ...++|||+++.|||-|+..|-|-+.|++|||
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEV  222 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEV  222 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEE
Confidence            46788776  5799999998875        12479999999999999999999999999997

>KOG0609|consensus

Probab=97.67  E-value=6.1e-05  Score=58.42  Aligned_cols=52  Identities=29%  Similarity=0.488  Sum_probs=45.4

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.|++.|. ...||.++.--..   ..+||.+|..||.|++.|.|++||+|+||
T Consensus       122 ~vriv~i~k~~~eplG~Tik~~e~---~~~~vARI~~GG~~~r~glL~~GD~i~Ev  174 (542)
T KOG0609|consen  122 AVRIVRIVKNTGEPLGATIRVEED---TKVVVARIMHGGMADRQGLLHVGDEILEV  174 (542)
T ss_pred             eeEEEEEeecCCCccceEEEeccC---CccEEeeeccCCcchhccceeeccchhee
Confidence            3678999998 8899999984332   27999999999999999999999999986

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.66  E-value=9.3e-05  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.498  Sum_probs=32.3

Q ss_pred             CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         33 TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        33 ~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+||+.+.-  +  ..+++|..|.+++||++. .|++||+|++|
T Consensus         2 ~~lG~~~~~--~--~~~~~V~~v~~~s~a~~~-gl~~GD~I~~v   40 (85)
T cd00988           2 GGIGLELKY--D--DGGLVITSVLPGSPAAKA-GIKAGDIIVAI   40 (85)
T ss_pred             eEEEEEEEE--c--CCeEEEEEecCCCCHHHc-CCCCCCEEEEE
Confidence            478888753  2  367999999999999996 59999999975

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=97.57  E-value=7e-05  Score=60.40  Aligned_cols=53  Identities=26%  Similarity=0.494  Sum_probs=47.0

Q ss_pred             cEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.|.|.|.  ...|=|++.||.+. ..+|||..|.|+.-|++.| |+.||+||||
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEV  589 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEV  589 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhc
Confidence            4567888885  56999999999995 6899999999999999977 9999999987

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.45  E-value=0.00029  Score=40.42  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             ccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         35 LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        35 LG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +|+.+.-  +  +.++.|..|.++++|++.| |++||+|++|
T Consensus         3 ~G~~~~~--~--~~~~~V~~V~~~s~a~~aG-l~~GD~I~~I   39 (80)
T cd00990           3 LGLTLDK--E--EGLGKVTFVRDDSPADKAG-LVAGDELVAV   39 (80)
T ss_pred             ccEEEEc--c--CCcEEEEEECCCChHHHhC-CCCCCEEEEE
Confidence            4666642  1  3469999999999999976 9999999986

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=97.31  E-value=0.00019  Score=59.18  Aligned_cols=47  Identities=26%  Similarity=0.436  Sum_probs=38.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.|++.|+ ..|||-++.|     .+++|..|.+|||+.  |+|++||+||+|
T Consensus        55 ~pr~vq~~r~-~~lGFgfvag-----rPviVr~VT~GGps~--GKL~PGDQIl~v  101 (1298)
T KOG3552|consen   55 EPRQVQLQRN-ASLGFGFVAG-----RPVIVRFVTEGGPSI--GKLQPGDQILAV  101 (1298)
T ss_pred             cchhhhhhcc-ccccceeecC-----CceEEEEecCCCCcc--ccccCCCeEEEe
Confidence            4677888886 4566665555     579999999999998  899999999986

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.23  E-value=0.00039  Score=40.52  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=25.6

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||++.| |++||+|++|
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~I   37 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSI   37 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEE
Confidence            3589999999999999865 9999999985

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.17  E-value=0.00051  Score=39.67  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||+. + |++||.|++|
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~I   34 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAV   34 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEE
Confidence            4689999999999986 6 9999999975

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.15  E-value=0.00074  Score=38.46  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=25.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.|..|.++++|++.| |++||+|++|
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~i   39 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAI   39 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEE
Confidence            568999999999999866 9999999985

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=96.86  E-value=0.0012  Score=38.22  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=25.3

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.++++|++.| |++||.|++|
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~I   51 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAV   51 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEE
Confidence            489999999999999865 9999999975

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=96.84  E-value=0.0021  Score=47.71  Aligned_cols=44  Identities=27%  Similarity=0.494  Sum_probs=34.4

Q ss_pred             CCcccEEEecCCC--CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~--~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|+.+.-...  .+..+++|..|.+++||++.| |++||+|++|
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~I  129 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAI  129 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            4688988763222  112379999999999999987 9999999986

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.83  E-value=0.0015  Score=52.07  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=34.2

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|+.+.-  +  +..++|..|.|||||++.+.|++||+|++|
T Consensus       243 ~~GIGa~l~~--~--~~~~~V~~vipGsPA~ka~gLk~GD~IlaV  283 (667)
T PRK11186        243 LEGIGAVLQM--D--DDYTVINSLVAGGPAAKSKKLSVGDKIVGV  283 (667)
T ss_pred             eeEEEEEEEE--e--CCeEEEEEccCCChHHHhCCCCCCCEEEEE
Confidence            4688888753  2  246899999999999998789999999986

>TIGR00225 prc C-terminal peptidase (prc)

Probab=96.71  E-value=0.0022  Score=46.46  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|+.+.--    ...++|..|.+++||++.| |++||+|++|
T Consensus        50 ~~~lG~~~~~~----~~~~~V~~V~~~spA~~aG-L~~GD~I~~I   89 (334)
T TIGR00225        50 LEGIGIQVGMD----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKI   89 (334)
T ss_pred             eEEEEEEEEEE----CCEEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            35788887531    3479999999999999988 9999999986

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3605|consensus

Probab=96.62  E-value=0.001  Score=53.19  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             EEEEEEecC-CCcccEEEe-cCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLA-GHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~-Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|.|.|- ++.||+-|+ -|-.+.-+.++|....++|||++.|+|-+||+|+.|
T Consensus       646 qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaI  701 (829)
T KOG3605|consen  646 QKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSI  701 (829)
T ss_pred             cceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEee
Confidence            467888887 789999766 333344568899999999999999999999999875

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=96.57  E-value=0.003  Score=47.48  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=35.9

Q ss_pred             CCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         31 SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        31 ~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...|+|+.+.-...   ..+.|.++.+++||++.| |++||+|+.|
T Consensus        98 ~~~GiG~~i~~~~~---~~~~V~s~~~~~PA~kag-i~~GD~I~~I  139 (406)
T COG0793          98 EFGGIGIELQMEDI---GGVKVVSPIDGSPAAKAG-IKPGDVIIKI  139 (406)
T ss_pred             cccceeEEEEEecC---CCcEEEecCCCChHHHcC-CCCCCEEEEE
Confidence            36799999885432   679999999999999998 9999999976

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.46  E-value=0.0044  Score=46.20  Aligned_cols=28  Identities=29%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||+|++|
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~V  284 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSV  284 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEE
Confidence            589999999999999977 9999999986

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00054 RIP metalloprotease RseP

Probab=96.04  E-value=0.015  Score=43.62  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+..|..|.+++||++.| |++||+|++|
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~V  230 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSI  230 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            478999999999999966 9999999986

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3605|consensus

Probab=95.74  E-value=0.012  Score=47.41  Aligned_cols=46  Identities=33%  Similarity=0.598  Sum_probs=38.3

Q ss_pred             cEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|.+.|.  .--||||+..|        +|-++..||.|+| |.+++|.+|+||
T Consensus       736 PV~~V~I~RPd~kyQLGFSVQNG--------iICSLlRGGIAER-GGVRVGHRIIEI  783 (829)
T KOG3605|consen  736 PVTTVLIRRPDLRYQLGFSVQNG--------IICSLLRGGIAER-GGVRVGHRIIEI  783 (829)
T ss_pred             CceEEEeecccchhhccceeeCc--------Eeehhhcccchhc-cCceeeeeEEEE
Confidence            3567777776  45899999866        6778999999999 779999999986

>KOG3129|consensus

Probab=95.69  E-value=0.01  Score=41.91  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=25.5

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+-++|..|.|++||++. .|++||+|+++
T Consensus       138 ~~Fa~V~sV~~~SPA~~a-Gl~~gD~il~f  166 (231)
T KOG3129|consen  138 RPFAVVDSVVPGSPADEA-GLCVGDEILKF  166 (231)
T ss_pred             cceEEEeecCCCChhhhh-CcccCceEEEe
Confidence            457899999999999995 59999999974

>PRK10139 serine endoprotease; Provisional

Probab=95.62  E-value=0.062  Score=40.90  Aligned_cols=28  Identities=11%  Similarity=0.236  Sum_probs=25.4

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~I  417 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGV  417 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            478999999999999966 9999999986

>PRK10139 serine endoprotease; Provisional

Probab=95.30  E-value=0.02  Score=43.55  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~I  317 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSL  317 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEE
Confidence            589999999999999865 9999999986

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.26  E-value=0.072  Score=40.23  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=24.9

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ....|..|.+++||++.| |++||+|++|
T Consensus       221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~I  248 (449)
T PRK10779        221 IEPVLAEVQPNSAASKAG-LQAGDRIVKV  248 (449)
T ss_pred             cCcEEEeeCCCCHHHHcC-CCCCCEEEEE
Confidence            357999999999999976 9999999986

>PRK10898 serine endoprotease; Provisional

Probab=95.20  E-value=0.02  Score=42.06  Aligned_cols=28  Identities=29%  Similarity=0.611  Sum_probs=25.6

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I  306 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISV  306 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            589999999999999965 9999999986

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.16  E-value=0.021  Score=42.61  Aligned_cols=28  Identities=25%  Similarity=0.440  Sum_probs=25.9

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.++++|++.| |++||.|++|
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~I  389 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSV  389 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence            589999999999999976 9999999986

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.02  E-value=0.02  Score=41.98  Aligned_cols=28  Identities=32%  Similarity=0.758  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I  305 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKY  305 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEE
Confidence            489999999999999866 9999999985

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10942 serine endoprotease; Provisional

Probab=95.01  E-value=0.027  Score=43.03  Aligned_cols=28  Identities=32%  Similarity=0.563  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.++++|++.| |++||.|++|
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~I  338 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSL  338 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            589999999999999966 9999999975

>KOG3938|consensus

Probab=94.87  E-value=0.027  Score=41.28  Aligned_cols=54  Identities=17%  Similarity=0.299  Sum_probs=44.5

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL   74 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il   74 (76)
                      ...++.++|++.|+.+-||++|.   |+.-.--||++|.++++.++--.+++||.|=
T Consensus       122 HvkGq~kEv~v~KsedalGlTIT---DNG~GyAFIKrIkegsvidri~~i~VGd~IE  175 (334)
T KOG3938|consen  122 HVKGQAKEVEVVKSEDALGLTIT---DNGAGYAFIKRIKEGSVIDRIEAICVGDHIE  175 (334)
T ss_pred             hhcCcceeEEEEecccccceEEe---eCCcceeeeEeecCCchhhhhhheeHHhHHH
Confidence            34677789999999999999996   3334567999999999999988889999763

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=94.64  E-value=0.019  Score=43.31  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             EEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         50 VFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        50 I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      -+|..|.|++||++.| |++||.|++|
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~v  153 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAV  153 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEE
Confidence            4789999999999976 9999999975

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=94.54  E-value=0.11  Score=33.82  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             CCCCcEEEEEEecC-----CCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCC-CCEEEE
Q psy18106         18 SLGPDLVVVTLERS-----HTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLV-GDELLE   75 (76)
Q Consensus        18 ~~~~e~~~v~L~k~-----~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~-GD~ile   75 (76)
                      .-....+.|.+...     ..-||++|.=....  .....=|.+|.|++||++.| |++ .|-|+.
T Consensus         6 ~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig   70 (138)
T PF04495_consen    6 AKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIG   70 (138)
T ss_dssp             TTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEE
T ss_pred             CCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEE
Confidence            33445677777532     45779988754432  35688899999999999988 887 598875

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10942 serine endoprotease; Provisional

Probab=94.40  E-value=0.041  Score=42.04  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.++++|++.| |++||.|++|
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~V  435 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGA  435 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            479999999999999866 9999999986

>TIGR00054 RIP metalloprotease RseP

Probab=93.89  E-value=0.042  Score=41.22  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=25.2

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+|..|.|++||++.| |++||.|++|
T Consensus       127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~v  155 (420)
T TIGR00054       127 EVGPVIELLDKNSIALEAG-IEPGDEILSV  155 (420)
T ss_pred             CCCceeeccCCCCHHHHcC-CCCCCEEEEE
Confidence            3567899999999999955 9999999975

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=93.42  E-value=0.13  Score=36.63  Aligned_cols=29  Identities=14%  Similarity=0.017  Sum_probs=25.9

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++.|..+.++++|++-| |++||.|++|
T Consensus       190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~I  218 (259)
T TIGR01713       190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVAL  218 (259)
T ss_pred             eeEEEEEecCCCCHHHHcC-CCCCCEEEEE
Confidence            3689999999999999976 9999999975

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=93.35  E-value=0.18  Score=39.67  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .-.||+.+.  .+  .....|+.|.++|||++.| |.+||+|+.|
T Consensus       450 ~~~LGl~v~--~~--~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai  489 (558)
T COG3975         450 AYYLGLKVK--SE--GGHEKITFVFPGGPAYKAG-LSPGDKIVAI  489 (558)
T ss_pred             CcccceEec--cc--CCeeEEEecCCCChhHhcc-CCCccEEEEE
Confidence            447888865  22  3568999999999999987 9999999975

>KOG1738|consensus

Probab=89.81  E-value=0.31  Score=38.96  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             cCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         30 RSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        30 k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |.+.|+|+-|.---   +...+|+.+.++++|+....|..||++++|
T Consensus       210 kp~eglg~~I~Ssy---dg~h~~s~~~e~Spad~~~kI~dgdEv~qi  253 (638)
T KOG1738|consen  210 SPSEGLGLYIDSSY---DGPHVTSKIFEQSPADYRQKILDGDEVLQI  253 (638)
T ss_pred             CcccCCceEEeeec---CCceeccccccCChHHHhhcccCccceeee
Confidence            45778999887444   356799999999999999999999999986

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.35  E-value=0.42  Score=34.57  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.4

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++.| ++.||.|+++
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~v  297 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAV  297 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEE
Confidence            3569999999999999976 9999999874

>KOG4371|consensus

Probab=87.74  E-value=0.51  Score=40.09  Aligned_cols=51  Identities=31%  Similarity=0.514  Sum_probs=41.0

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE   75 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ile   75 (76)
                      ++.+.|.|. ..++|++++-.  .+..+||+..+..+.+|...|++++||++..
T Consensus      1246 l~~~~~~~~p~~~~~~~~~~~--~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~ 1297 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKR--TMSDGIFIRNIAQDSAASSEGTLRVGDRLVS 1297 (1332)
T ss_pred             hhhheeeeccccccccccccc--CcCCceeeecccccccccccccccccceeec
Confidence            344555555 78999998744  3468999999999999999999999999863

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=81.97  E-value=2.7  Score=32.01  Aligned_cols=28  Identities=29%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             CcEEEEEeC--------CCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLN--------PSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~--------~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|....        .++||++.| |++||.|++|
T Consensus       105 ~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsI  140 (402)
T TIGR02860       105 KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKI  140 (402)
T ss_pred             CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEE
Confidence            466775542        257887754 9999999986

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		2e-16
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		3e-05
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		6e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		6e-04
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		6e-04
1kef_A	93	Pdz1 Of Sap90 Length = 93		6e-04
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		6e-04
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		7e-04

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 52/70 (74%)
Query: 7  FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
          F+  K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A+  G 
Sbjct: 10 FTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 69
Query: 67 VLVGDELLEI 76
          + +GDELLEI
Sbjct: 70 MRIGDELLEI 79

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          D   V LER   G G SL G ++   M ++V  L   G A ++G + +GDE+LEI
Sbjct: 24 DFYTVELERGAKGFGFSLRGGRE-YNMDLYVLRLAEDGPAERSGKMRIGDEILEI 77

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26  VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
           +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 63  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 115

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 9  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 6  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 5  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 5  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 6  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
          +TLER ++GLG S+AG  D   +    ++F+  + P G+A++ G + V D +L
Sbjct: 16 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-19
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	5e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-09
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	3e-11
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	4e-11
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	6e-11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	8e-11
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	4e-10
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	7e-10
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	7e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-09
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-09
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-09
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-09
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-06
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-09
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-09
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	2e-09
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-09
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-09
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-09
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	3e-09
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-09
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	4e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-07
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	5e-09
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	5e-09
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	6e-09
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	6e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	8e-09
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	8e-09
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-08
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-08
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-08
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	1e-08
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-08
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-08
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-08
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-08
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-08
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-08
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-08
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-06
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	4e-08
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	5e-08
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	5e-08
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	6e-08
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	6e-08
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	6e-08
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	7e-08
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	8e-08
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	8e-08
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	9e-08
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	9e-08
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-07
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-07
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-07
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-07
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-07
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-07
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	3e-07
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	4e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	4e-07
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	4e-07
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	5e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	6e-07
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	6e-07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	6e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	7e-07
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	7e-07
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	7e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	8e-07
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	9e-07
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-06
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-06
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-06
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-06
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-06
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-06
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	3e-06
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-06
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-06
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	4e-06
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	6e-06
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	6e-06
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	6e-06
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-05
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-05
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	1e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-05
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	2e-05
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-05
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-05
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	3e-05
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	3e-05
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-05
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	4e-05
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	4e-05
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-05
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	5e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	6e-05
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	7e-05
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	7e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	7e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	7e-05
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	7e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	9e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	9e-05
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-04
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-04
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-04
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	1e-04
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	4e-04
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	6e-04
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	7e-04
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	7e-04
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	7e-04

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 74.8 bits (184), Expect = 2e-19
 Identities = 35/75 (46%), Positives = 54/75 (72%)

Query: 2  SSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSA 61
          SS   F+  K++++Y  L  +L ++ LE+   GLG+SLAG+KDR++M++FV G+NP G A
Sbjct: 5  SSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPA 64

Query: 62 SKTGSVLVGDELLEI 76
          +  G + +GDELLEI
Sbjct: 65 AADGRMRIGDELLEI 79

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.1 bits (133), Expect = 5e-12
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G    +V +++S   LGI++ G  +  +    +  +   GSA   G + VG  +LE+
Sbjct: 1  GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 22  DLVVVTLERSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +   +TLER ++GLG S+AG  D        ++F+  + P G+A++ G + V D +L +
Sbjct: 59  EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 117

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 21  PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +   + + R  TGLG ++ G +D     +F+  +   G A  +G +  GD++L +
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV 359

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 53.1 bits (128), Expect = 3e-11
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          S G  +  V L+R    LGI+++G ++     + +  L   G A +TG++ +GD +L I
Sbjct: 1  SSGAIIYTVELKRYGGPLGITISGTEE-PFDPIIISSLTKGGLAERTGAIHIGDRILAI 58

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 53.2 bits (128), Expect = 4e-11
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V +  +    GLG SLAG  D     + V  + P+G AS+ G++  G+E+L I
Sbjct: 18 VTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 52.7 bits (127), Expect = 6e-11
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
            D   +       D   V LER   G G SL G ++   M ++V  L   G A ++G +
Sbjct: 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGRE-YNMDLYVLRLAEDGPAERSGKM 68

Query: 68 LVGDELLEI 76
           +GDE+LEI
Sbjct: 69 RIGDEILEI 77

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 51.9 bits (125), Expect = 8e-11
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          S+G +  +  + +  TGLG+S+ G  D    A+ +  +   G+A K G +  GD++LE+
Sbjct: 1  SMGCETTI-EISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEV 58

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 50.3 bits (121), Expect = 3e-10
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           D+  V L ++   LGIS+ G  +       ++V  + P G+A   G +  GD +L +
Sbjct: 4  GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 50.4 bits (121), Expect = 4e-10
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          G    +   + L +  TGLG ++ G +D     +FV  +   G A  +G +  GD +L +
Sbjct: 10 GGDAREPRKIILHKGSTGLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSV 67

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.6 bits (119), Expect = 7e-10
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          D   V +E+   G G S+ G ++  KM ++V  L   G A + G + VGD+++EI
Sbjct: 11 DYFTVDMEKGAKGFGFSIRGGRE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.6 bits (119), Expect = 7e-10
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G   + V L R  +G G  + G  +     + +  +   GSA + G +  GDEL+ +
Sbjct: 4  GSSGYKELDVHLRRMESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYV 62

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 49.7 bits (119), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +   + + R  TGLG ++ G +D     +F+  +   G A  +G +  GD++L +
Sbjct: 13 REPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV 66

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 15/53 (28%), Positives = 33/53 (62%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +++ + +  +GLG+S+ G KD    A+ +  +   G+A++ G +  GD++LE+
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV 71

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 16 YGSLGPDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
          Y    P    +TLER   GLG S+ G        + ++V  +   G+AS+ G +  GD++
Sbjct: 19 YFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQI 78

Query: 74 LEI 76
          + +
Sbjct: 79 IAV 81

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 48.8 bits (117), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            V VTL +     G  + G     +     V +  + P G A + G++  GD LL +
Sbjct: 3  RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 14 KKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
          KK   +GP   V+ L+  H GLGIS+ G K+   + + +  ++P   A + G + VGD +
Sbjct: 2  KKSQGVGPIRKVLLLKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAI 60

Query: 74 LEI 76
          L +
Sbjct: 61 LAV 63

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDEL 73
          S   +   +TLER ++GLG S+AG  D        ++F+  + P G+A++ G + V D +
Sbjct: 1  SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60

Query: 74 LEI 76
          L +
Sbjct: 61 LFV 63

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 27  TLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
            L +   GLG S+AG      +     ++V  +   G+A K G + +GD++L +
Sbjct: 105 KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 48.4 bits (116), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +   V L ++  GLGI++AG+    K     +FV  +  S +    G + +GD+++ +
Sbjct: 2  MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +L  V LE+   GLGIS+ G          K+ +FV  +   G+A + G + V D L+E+
Sbjct: 4  ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 48.5 bits (116), Expect = 2e-09
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGD 71
          GS G +L  V LE+   GLGIS+ G          K+ +FV  +   G+A + G + V D
Sbjct: 4  GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63

Query: 72 ELLEI 76
          +++E+
Sbjct: 64 QIVEV 68

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 48.1 bits (115), Expect = 2e-09
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            ++ V L +   GLG S+AG           ++++  +   G+A K G + +GD LL +
Sbjct: 2  MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 48.0 bits (115), Expect = 3e-09
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VV L ++  GLG ++ G K+     +++  + P G A + G +  GD+LL +
Sbjct: 8  VVELPKTDEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSV 58

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 48.7 bits (116), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +  VTLE+   GLG SL G K        + +  +    ++ ++ +V  GDE+L++
Sbjct: 28 ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL 85

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 48.6 bits (116), Expect = 3e-09
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 5  GNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
          G        +    L    +   L +S  G G ++ G  +     + +  L   G A+  
Sbjct: 1  GAMGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALD 59

Query: 65 GSVLVGDELLEI 76
          G +  GD ++ +
Sbjct: 60 GKMETGDVIVSV 71

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 47.7 bits (114), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 26 VTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + L R  +GLG ++ G  D         ++V  +  +G+A+  G +  GD++L +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 47.7 bits (114), Expect = 3e-09
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +   + + R  TGLG ++ G        +F+  +   G A  +G +  GD++L +
Sbjct: 10 REPRRIVIHRGSTGLGFNIVG--GEXGEGIFISFILAGGPADLSGELRKGDQILSV 63

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +++ L+     +G+ + G K+        +  + P G  +    + + D + +I
Sbjct: 18 KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDI 73

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 26  VTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           V L +     LG+SL+ ++    +   +  L           +  GD + + 
Sbjct: 117 VDLMKKAGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKF 164

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VV  +++  T LG++++G  D+      V  L   G A+++  + VGD +  +
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDK-DGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 44.3 bits (105), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 26  VTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           VTL +     G  + G     +     V +  + P G A + G++  GD LL +
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 47.7 bits (114), Expect = 4e-09
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            ++ + L +   GLG S+AG           +++V  +   G+A K G + +GD+LL +
Sbjct: 2  EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.3 bits (113), Expect = 5e-09
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
                V L R + G G++L G +D      + V GL   G A + G + VGD +L I
Sbjct: 9  ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 47.8 bits (114), Expect = 5e-09
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
          SS    +    L    +  TL++S+ G G ++ G  +     + V  + P G A++ G +
Sbjct: 5  SSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKM 63

Query: 68 LVGDELLEI 76
            GD ++ I
Sbjct: 64 ETGDVIVYI 72

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 47.3 bits (113), Expect = 6e-09
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 25 VVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V  L RS  GLG S+AG K  T        +FV  +   G+A + G++ VGD +L I
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 47.4 bits (113), Expect = 6e-09
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V +   +    L ++L G  D     V V  +   G+A + G V+ GDE++ I
Sbjct: 19 VRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 47.4 bits (113), Expect = 8e-09
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 21 PDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
             ++V + ++  + LGISL     R K  + +  + P+    ++G++  GD +L I
Sbjct: 14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI 70

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 46.5 bits (111), Expect = 8e-09
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            L +S  G G ++ G  +     + +  L   G A+  G +  GD ++ +
Sbjct: 4  TKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSV 53

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
               +  V LER  +GLG+ L            +++  L P   A+  G + +GD +LE
Sbjct: 4  GSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63

Query: 76 I 76
          +
Sbjct: 64 V 64

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 20 GPDLVVVTLERSHTGLGISLAGHKD---RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           P++ +V L +   GLG S+  ++D    T+  + +  L   G A ++G +L GD L+ +
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 46.7 bits (111), Expect = 1e-08
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 24 VVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            + L R  +GLG ++ G  D         ++V  +  +G+A+  G +  GD++L +
Sbjct: 19 EEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 46.2 bits (110), Expect = 1e-08
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 26 VTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + LER ++GLG S+AG  D         +F+  + P G+A+  G + V D +L +
Sbjct: 8  IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 46.2 bits (110), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRT-------KMAVFVCGLNPSGSASKTGSVLVGDEL 73
             + + L R    LG ++ G +             +FV  +  SG A+K G + + D +
Sbjct: 7  GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 74 LEI 76
          +E+
Sbjct: 67 IEV 69

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 21  PDLVVVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLE 75
            +L  V LE+   GLGIS+ G          K+ +FV  +   G+A + G + V D L+E
Sbjct: 79  LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138

Query: 76  I 76
           +
Sbjct: 139 V 139

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           + L R  TG G  + G  +     +++  + P G+A   G +  GDEL+ +
Sbjct: 5  DIFLWRKETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISV 55

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 22 DLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +++ V L +  +G  LGI L    D  +  VF+  L   G A++ G +   D +L I
Sbjct: 3  EILQVALHKRDSGEQLGIKLVRRTD--EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 45.4 bits (108), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 20 GPDLV-VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          G D V ++ L ++   LG ++   +     A+ V  +   G+A ++G + VGDEL E+
Sbjct: 1  GSDSVKIIRLVKNREPLGATIKKDEQ--TGAIIVARIMRGGAADRSGLIHVGDELREV 56

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 45.8 bits (109), Expect = 3e-08
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDEL 73
           D+  V L ++   LGIS+    D+           ++V  + P G+A   G +  GD +
Sbjct: 8  GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67

Query: 74 LEI 76
          L +
Sbjct: 68 LAV 70

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 45.4 bits (108), Expect = 3e-08
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 24 VVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V +  E+  + LGIS++G +D         ++V  L P  +A+  G +   D++L +
Sbjct: 16 VELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 46.7 bits (111), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 21 PDLVVVTLERS-HTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +   V L     TG GI L G    T+       +  +     A + G + +GD ++ I
Sbjct: 5  TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 25  VVTLERSHTGLGISLAGHKDRTK-MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           V   ++    LGI+++    R     + +  +     A +TG++ +GD+LL I
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 163

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 45.4 bits (108), Expect = 4e-08
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 1  MSSFGNFSS--DKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCG 54
          M    + SS  D   +        +V + L +   GLG S+AG           +++V  
Sbjct: 1  MHHHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTK 60

Query: 55 LNPSGSASKTGSVLVGDELLEI 76
          +   G+A K G + VGD LL +
Sbjct: 61 IIDGGAAQKDGRLQVGDRLLMV 82

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 45.1 bits (107), Expect = 5e-08
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +  V L    +GLG  + G K      V V  + P G A + G +  GD +L+I
Sbjct: 15 HVEEVELINDGSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKI 66

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 45.0 bits (107), Expect = 5e-08
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P+++ VTL++   G+G+S+   K   + K+ ++V  +   G+A   G +  GD+LL +
Sbjct: 10 PEIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 45.1 bits (107), Expect = 6e-08
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
          + G  + V  L +    GLG S+ G +   R ++ +FV  +     A + G +   D++L
Sbjct: 16 AQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQIL 75

Query: 75 EI 76
           I
Sbjct: 76 AI 77

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 44.2 bits (105), Expect = 6e-08
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 21 PDLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
               VT+ ++   GLGIS+ G ++  KM + +  +    +A +T ++ VGD +L +
Sbjct: 3  LQRRRVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSV 58

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 44.8 bits (106), Expect = 6e-08
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 22 DLVVVTL-ERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +++ V L +R   GLG  +       K  V +  L   G+A ++G +  GD +L +
Sbjct: 1  NVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV 54

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 44.7 bits (106), Expect = 7e-08
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 20 GPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +++ VTL    +  LGIS+ G  + R    +++  +   G+ +  G +  GD LL++
Sbjct: 3  HMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 44.4 bits (105), Expect = 8e-08
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           V+ L+  H GLGIS+ G K+   + + +  ++P   A + G + VGD +L +
Sbjct: 30 KVLLLKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAV 81

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 44.8 bits (106), Expect = 8e-08
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 21 PDLVVVTL-ERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P+++ V L +R   GLG  +       K  V +  L   G+A ++G +  GD +L +
Sbjct: 7  PNVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV 61

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 44.7 bits (106), Expect = 9e-08
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
             + + L++   GLG S+            ++V  + P G+A + G +  GD L+E+
Sbjct: 29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 44.2 bits (105), Expect = 9e-08
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 22 DLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            + + L++   GLG S+            ++V  + P G+A + G +  GD L+E+
Sbjct: 11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 44.5 bits (105), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLER--SHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKT 64
          SS  + ++      +L  V L R  S   LG+++    D    + +++  ++P+  A+K 
Sbjct: 5  SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 65 GSVLVGDELLEI 76
          G +  GD +++I
Sbjct: 65 GRIREGDRIIQI 76

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 44.4 bits (105), Expect = 1e-07
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
          + G  +  + +ER S  GLG S+   +     K+ +FV  + P   A +   +   D++L
Sbjct: 21 AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQIL 80

Query: 75 EI 76
           I
Sbjct: 81 AI 82

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 43.6 bits (103), Expect = 1e-07
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          S+      V + +S   LG+++  +        F+  +   G      ++ VGD +  I
Sbjct: 1  SMKGIEKEVNVYKSEDSLGLTITDNGV---GYAFIKRIKDGGVIDSVKTICVGDHIESI 56

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 44.3 bits (105), Expect = 1e-07
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 20 GPDLVVVTLERSHT-GLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
             L  V +++  T  LGIS+AG        + +F+  ++P+G A++T  + VGD ++ I
Sbjct: 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 43.6 bits (103), Expect = 2e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKM-AVFVCGLNPSGSASKTGSVLVGDELLEI 76
              V      TGLG+ + G  +R +   V++  + P G   K G +  GD+L+ I
Sbjct: 14 PAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + + +T+ R   GLGIS+AG             +F+  ++  G A++ G V VGD+LLE+
Sbjct: 3  EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 42.6 bits (101), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 22 DLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          D + + L++    GLG+S+ G ++     VFV  +   G A   G ++ GD++L +
Sbjct: 4  DTLTIGLQKKPGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMV 57

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 43.1 bits (102), Expect = 3e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGD 71
            +  + + +T+ R   GLGIS+AG             +F+  ++  G A++ G V VGD
Sbjct: 10 ARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGD 68

Query: 72 ELLEI 76
          +LLE+
Sbjct: 69 KLLEV 73

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 43.2 bits (102), Expect = 3e-07
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 25 VVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           VTL++     +GIS+ G        +++  +  +  A+  G+V  GDE+  +
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 42.7 bits (101), Expect = 4e-07
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 17 GSLGPDLVVVTLERS-HTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSV 67
          GS GP L  + ++++    LGIS+ G            T   +F+  ++P+G+A + G +
Sbjct: 4  GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63

Query: 68 LVGDELLEI 76
           VG  LLE+
Sbjct: 64 RVGLRLLEV 72

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 2  SSFGNFSSDKVKKKYGSLGPDLV-VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSG 59
           S G  + ++V +  G  G + V +V +E++    LG ++    D    +V +  +   G
Sbjct: 4  GSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD----SVIISRIVKGG 59

Query: 60 SASKTGSVLVGDELLEI 76
          +A K+G +  GDE+LEI
Sbjct: 60 AAEKSGLLHEGDEVLEI 76

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 42.3 bits (100), Expect = 4e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            V V L+      G +L G  +     + V  +   G A+ +  +  GDEL+ I
Sbjct: 11 QYVPVQLQGG-APWGFTLKGGLE-HCEPLTVSKIEDGGKAALSQKMRTGDELVNI 63

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +  LE+   G G  L G  ++ K+  ++  + P   A K G +L GD L+E+
Sbjct: 6  LCCLEKGPNGYGFHLHG--EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 42.0 bits (99), Expect = 6e-07
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 17 GSLGPDLVVVTLERS-HTGLGISL-AGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
          GS G +   V LE+    GLG++L             +  L   G A ++G++ +GD L 
Sbjct: 4  GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLT 63

Query: 75 EI 76
           I
Sbjct: 64 AI 65

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 42.4 bits (100), Expect = 6e-07
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 25 VVTLERS-HTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VV +++     LG+++AG        + ++V  + P G  S+ G +  GD LL +
Sbjct: 27 VVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 43.4 bits (102), Expect = 6e-07
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 20  GPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
              L  V L+R H  GLG+S+ G  +     +F+  L   G A   G + VGDE++ I
Sbjct: 82  SRKLKEVRLDRLHPEGLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 42.5 bits (100), Expect = 7e-07
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 24 VVVTLERSHTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
          V +    +   LG  +                  +F+  L P G A  TG + V DE+LE
Sbjct: 33 VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92

Query: 76 I 76
          +
Sbjct: 93 V 93

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 41.9 bits (99), Expect = 7e-07
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 20 GPDLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDEL 73
          G  + +VTL+++     GI +   + +         +F+ G+ P   A   G + VGD +
Sbjct: 3  GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRI 62

Query: 74 LEI 76
          L +
Sbjct: 63 LSL 65

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 42.1 bits (99), Expect = 7e-07
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 25 VVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           VTL++     +GIS+ G        +++  +  +  A+  G+V  GDE+  +
Sbjct: 27 KVTLQKDAQNLIGISIGGGAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 8e-07
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            LV +   ++H GLG S+ G  +   + ++V  + P   A K G + VGD++L +
Sbjct: 9  VRLVSLRRAKAHEGLGFSIRGGSE-HGVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 42.1 bits (99), Expect = 9e-07
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKDRTK--MAVFVCGLNPSGSASKTGSVLVGDELL 74
           L   L   ++ R S   LG+ + G K      +  F+  +     A   G +  GDE+L
Sbjct: 32 LLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91

Query: 75 EI 76
          E 
Sbjct: 92 EW 93

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 25 VVTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
          +V + R  +  LGIS+ G                +F+  +     A KT ++  GD++LE
Sbjct: 18 IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILE 77

Query: 76 I 76
          +
Sbjct: 78 V 78

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 6  NFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTG 65
          + SS   ++K      +   V +++    LGIS+   +      ++V  +     A + G
Sbjct: 3  SGSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG 59

Query: 66 SVLVGDELLEI 76
           +  GD+LLE 
Sbjct: 60 -LEYGDQLLEF 69

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 41.4 bits (97), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 17 GSLGPDLVVVTLERS-HTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDE 72
            +  +   V L     TG GI L G    T+       +  +     A + G + +GD 
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69

Query: 73 LLEI 76
          ++ I
Sbjct: 70 VMAI 73

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            ++   L   + GLG+ +  +       + +  L   G+A+  G +  GD L+ +
Sbjct: 26 NKVIQTKLTVGNLGLGLVVIQNGP----YLQISHLINKGAAASDGILQPGDVLISV 77

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + T+++  +G G +L    D++K   F+  ++P   A  +G +   D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 25 VVTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
           V L R     LGIS+ G                +F+  +     A K G++  GD ++E
Sbjct: 7  RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 66

Query: 76 I 76
          +
Sbjct: 67 V 67

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 40.9 bits (96), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +   +    GLG+SL G+K R     + +F+  +   G+A K G + + D+L+ +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + T+++  +G G +L    D++K   F+  ++P   A  +G +   D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G   + V +       G  ++G +D     + V  +   G A     +  GD ++ I
Sbjct: 1  GSSGSSGLTVDVAGP-APWGFRISGGRD-FHTPIIVTKVTERGKAEAAD-LRPGDIIVAI 57

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P  V +     +   G+ LA H       +FV  ++    A++ G++  GD +L+I
Sbjct: 3  PTKVTLVKSAKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKI 51

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 22 DLVVVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +   V L + +   LG+SL+ ++    +   +  L           +  GD + + 
Sbjct: 2  EKFNVDLMKKAGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKF 53

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 40.5 bits (95), Expect = 3e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 26 VTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V L R     LGIS+ G                +F+  +     A K G++  GD ++E+
Sbjct: 28 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 87

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 40.0 bits (94), Expect = 4e-06
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 22 DLVVVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +   V L + +   LG+SL+ ++        +  L           +  GD + + 
Sbjct: 8  EKFNVDLMKKAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKF 59

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 39.8 bits (93), Expect = 6e-06
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASK-TG 65
          S +K     G    +LV++ ++    G  G ++ G  D  KM V V  + P   A     
Sbjct: 3  SPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYD-QKMPVIVSRVAPGTPADLCVP 61

Query: 66 SVLVGDELLEI 76
           +  GD+++ I
Sbjct: 62 RLNEGDQVVLI 72

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 39.8 bits (93), Expect = 6e-06
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 1  MSSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGS 60
            S G   +   +  +  L P + +V   +    +G+ LAG  D   + +FV G+     
Sbjct: 9  HHSSGGTENLYFQG-HMILRPSMKLVKFRKG-DSVGLRLAGGND---VGIFVAGVLEDSP 63

Query: 61 ASKTGSVLVGDELLEI 76
          A+K G +  GD++L +
Sbjct: 64 AAKEG-LEEGDQILRV 78

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          ++ V L +S       L          +FV  +  +G A+K G++  GD +L+I
Sbjct: 1  MIGVLLMKSRANEEYGLRLGSQ-----IFVKEMTRTGLATKDGNLHEGDIILKI 49

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V +   R +   G+ LA H       +FV  ++    A++ G++  GD +L+I
Sbjct: 4  VTLVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKI 49

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          D   V LE      G  L G KD   + + +  L P G A++ G V VGD +L I
Sbjct: 3  DSFKVVLEGP-APWGFRLQGGKD-FNVPLSISRLTPGGKAAQAG-VAVGDWVLSI 54

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 25  VVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            VT+ ++   GLGIS+ G ++  KM + +  +    +A +T ++ VGD +L +
Sbjct: 80  RVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSV 131

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 17 GSLGPDLV--VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
          GS G      +  L +     G SL   +   K  V++  + P G A + G VL  D L+
Sbjct: 1  GSSGSSGQPRLCYLVKEGGSYGFSLKTVQG--KKGVYMTDITPQGVAMRAG-VLADDHLI 57

Query: 75 EI 76
          E+
Sbjct: 58 EV 59

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 21 PDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +  V +E+S  G LG S+ G  +   + +FV  +    SA + G + VGD++ E+
Sbjct: 9  DIIHSVRVEKSPAGRLGFSVRGGSE-HGLGIFVSKVEEGSSAERAG-LCVGDKITEV 63

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 25 VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          ++  E+     +GI L   K   K +  V  +   G   + GS+ VGDE+LEI
Sbjct: 15 LIQFEKVTEEPMGICL---KLNEKQSCTVARILHGGMIHRQGSLHVGDEILEI 64

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 25 VVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
                S  GLGI + G K+      ++  ++  + P GSA +TG ++ G ++LE 
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 26 VTLER-SHTGLGISLAGHKDRTK------MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V + R  + G G  +    +R +      +   +  +     A +   + VGD +L +
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 18 SLGPDLVVVTLERSHT-GLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDE 72
          S   +   V L R     LGI + G+           ++V  + P  +A   G + V D+
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70

Query: 73 LLEI 76
          ++ +
Sbjct: 71 IVAV 74

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 37.3 bits (86), Expect = 4e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 17 GSLGPDLVVVTLERSHT---GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
          G++G     + +E+S T     G SL+  ++     ++V  +  +G ASK G +  GDE+
Sbjct: 1  GAMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEI 59

Query: 74 LEI 76
          LEI
Sbjct: 60 LEI 62

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +  L +   G G +L    D+++   ++  ++P   A+++G +   D L+E+
Sbjct: 7  LCHLRKGPQGYGFNLHS--DKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 22 DLVVVTLER-SHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
          +   VTL R    G GI+++G     H    + ++ +  +   G A   G +   D +  
Sbjct: 7  EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAM 64

Query: 76 I 76
          +
Sbjct: 65 V 65

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
          SS            +  V        GLG S++      K  +F+  + P   +++ G +
Sbjct: 2  SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPI-QKPGIFISHVKPGSLSAEVG-L 59

Query: 68 LVGDELLEI 76
           +GD+++E+
Sbjct: 60 EIGDQIVEV 68

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + T+++  +G G +L    D++K   F+  ++P   A  +G +   D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
              V+L       G  L G KD   M + +  L   G A++   V +GD +L I
Sbjct: 3  SNYSVSLVGP-APWGFRLQGGKD-FNMPLTISSLKDGGKAAQAN-VRIGDVVLSI 54

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 37.1 bits (86), Expect = 7e-05
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 20 GPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          G D   V L       LG+++ G  +   + +++ G++P   A  +G + VGD++LE+
Sbjct: 18 GGDEKKVNLVLGDGRSLGLTIRGGAE-YGLGIYITGVDPGSEAEGSG-LKVGDQILEV 73

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VTL       G  L G KD   M + +  + P   A+++  +  GD ++ I
Sbjct: 5  VTLTGP-GPWGFRLQGGKD-FNMPLTISRITPGSKAAQSQ-LSQGDLVVAI 52

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMA-VFVCGLNPSGSASKTGSVLVGDELLEI 76
           + LE+   G G  L   K        F+  ++P   A K G +  GD L+ +
Sbjct: 6  CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 36.6 bits (85), Expect = 7e-05
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G    VV +++   G G  L       +    +  + P   A   G +   D ++ +
Sbjct: 1  GSSGSSGRVVVIKKGSNGYGFYLRA--GPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 57

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VV +++   G G  L       +    +  + P   A   G +   D ++ +
Sbjct: 8  VVVIKKGSNGYGFYLRA--GPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 36.2 bits (84), Expect = 9e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +L  VTL +       G S+A      +  V+V  + P+G     G +   D LL++
Sbjct: 6  ELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 36.1 bits (84), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +  L +   G G  L     R     F+  +   G A   G +   D ++E+
Sbjct: 6  LCRLAKGENGYGFHLNA--IRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEV 54

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 35.7 bits (83), Expect = 1e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          + V +       G  + G +D     + V  +   G A     +  GD ++ I
Sbjct: 4  LTVDVAGP-APWGFRITGGRD-FHTPIMVTKVAERGKAKDAD-LRPGDIIVAI 53

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +        LG +L G+       V V  L+P  SAS  G    GD ++ I
Sbjct: 26 SIRFTAEEGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSI 71

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 18 SLGPDLVVVTLER-SHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGD 71
           +  +   VTL++ S  G GI+++G     H +  + ++ +  + P G A   G +   D
Sbjct: 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQEND 67

Query: 72 ELLEI 76
           ++ +
Sbjct: 68 RVVMV 72

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 35.7 bits (83), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            VTL    +  G  L G +D     + +  ++    A+    +  GD +  I
Sbjct: 10 HSVTLRGP-SPWGFRLVGGRD-FSAPLTISRVHAGSKAALAA-LCPGDLIQAI 59

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 29  ERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +     LG+ +           V +  +   G A+++G + +GD+++ I
Sbjct: 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 34.1 bits (79), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P +  V + R   G G +L+G          +  +     A   G +  GD++L +
Sbjct: 1  PRVRSVEVARGRAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAV 50

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 34.6 bits (80), Expect = 4e-04
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +T+ R   G G ++          V V  ++  G A + G +   D +L++
Sbjct: 6  QITIPRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQL 51

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 33.9 bits (78), Expect = 6e-04
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 23 LVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +    ++       G  L G KD  +  + +  + P   A+    + +GD +  I
Sbjct: 2  MTTQQIDLQGPGPWGFRLVGGKD-FEQPLAISRVTPGSKAALAN-LCIGDVITAI 54

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 33.8 bits (78), Expect = 7e-04
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           V +++   G G +++G +      V V  + P G+A K G V  GD ++++
Sbjct: 11 CVIIQKDQHGFGFTVSGDRI-----VLVQSVRPGGAAMKAG-VKEGDRIIKV 56

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 34.2 bits (78), Expect = 7e-04
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 21 PDLVVVTLERSHT---GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
               + +E+S T     G SL+  ++     ++V  +  +G ASK G +  GDE+LEI
Sbjct: 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEI 71

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 33.9 bits (78), Expect = 7e-04
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 25 VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +V  +++    +GI+L  ++        V  +   G   + G++ VGDE+ EI
Sbjct: 4  LVQFQKNTDEPMGITLKMNELN---HCIVARIMHGGMIHRQGTLHVGDEIREI 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.66
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.48
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.48
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.46
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.44
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.44
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.43
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.43
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.42
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.41
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.41
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.41
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.41
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.41
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.4
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.4
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.4
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.4
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.4
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.39
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.38
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.38
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.38
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.37
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.37
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.37
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.37
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.35
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.35
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.35
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.35
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.35
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.34
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.34
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.34
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.34
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.34
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.34
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.33
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.33
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.33
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.33
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.32
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.31
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.31
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.31
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.3
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.3
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.3
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.3
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.29
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.29
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.27
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.27
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.27
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.27
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.27
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.26
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.26
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.25
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.25
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.24
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.23
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.23
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.23
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.23
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.22
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.22
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.22
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.21
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.21
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.2
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.2
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.2
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.2
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.19
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.19
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.19
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.19
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.19
2ego_A	96	General receptor for phosphoinositides 1- associat	99.18
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.18
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.18
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.18
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.18
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.17
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.17
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.16
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.16
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.16
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.15
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.14
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.14
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.14
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.14
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.13
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.13
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.12
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.12
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.12
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.12
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.11
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.11
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.1
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.1
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.1
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.09
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.09
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.08
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.07
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.07
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.06
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.64
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.06
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.05
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.05
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.04
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.03
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.02
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.01
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.0
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.99
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.98
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.98
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.97
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.95
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.95
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.95
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.94
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.92
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.88
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.87
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.86
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.82
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.82
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.81
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.81
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.8
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.8
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.79
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.79
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.78
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.77
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.74
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.73
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.71
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.7
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.69
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.68
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.67
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.66
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.66
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.65
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.65
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.65
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.53
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.45
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.43
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.39
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.23
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.98
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.73
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.62
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.5
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.48
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.48
3k50_A	403	Putative S41 protease; structural genomics, joint	97.34
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.32
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.29
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.21
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.16
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.1
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.0
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.94
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	96.91
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	96.9
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	96.84
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.7
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.66
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	96.51
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.48
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	96.45
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.39
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.35
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.24
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.2
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	95.76
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	95.66
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	95.59
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	95.26
1k32_A	1045	Tricorn protease; protein degradation, substrate g	94.46
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	94.43
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	94.08

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.66  E-value=3.1e-16  Score=97.79  Aligned_cols=70  Identities=47%  Similarity=0.942  Sum_probs=66.3

Q ss_pred             CchhhhhhhcCCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106          7 FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus         7 ~~~~~~~~~~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |+...+.++|..+++++++|+|.|+..+|||++.++.+....+++|..|.|++||++.|+|++||+|++|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~I   79 (124)
T 2daz_A           10 FTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI   79 (124)
T ss_dssp             GSHHHHHHHSTTSSSEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEE
T ss_pred             cchhhHHHhhccCCCceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            8899999999999999999999999889999999998866689999999999999999999999999986

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.48  E-value=8.6e-14  Score=84.20  Aligned_cols=57  Identities=28%  Similarity=0.534  Sum_probs=50.0

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++++++|+|.|+..+|||+|.|+.+.+    +.+++|..|.+++||++.|+|++||+|++|
T Consensus         1 ~e~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   61 (105)
T 2awx_A            1 MEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV   61 (105)
T ss_dssp             --CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCeEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            357889999999899999999998742    358999999999999999999999999986

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.48  E-value=7.6e-14  Score=85.55  Aligned_cols=55  Identities=18%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++.++|+|.|...+|||+|.++.   ...+||++|.|+|+|+++|+|++||+|++|
T Consensus         2 ~~g~~k~V~l~K~~~~LG~tI~~~g---~g~~~I~rI~~gg~a~r~g~L~vGD~I~~V   56 (95)
T 3gge_A            2 MKGIEKEVNVYKSEDSLGLTITDNG---VGYAFIKRIKDGGVIDSVKTICVGDHIESI   56 (95)
T ss_dssp             CCEEEEEEEEECCSSCCCEEEECSS---SSCCEEEEECTTSHHHHCTTCCTTCEEEEE
T ss_pred             CCCeEEEEEEEECCCCceEEEEcCC---CCcEEEEEEcCCChHHhcCCCCCCCEEEEE
Confidence            3567899999999999999999652   356899999999999999999999999986

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=84.32  Aligned_cols=61  Identities=28%  Similarity=0.544  Sum_probs=53.1

Q ss_pred             cCCCCCcEEEEEEecCCCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         16 YGSLGPDLVVVTLERSHTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        16 ~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+..++++|+|.|...+|||+|.++.+.   ...++||..|.+++||+++|+|++||+|++|
T Consensus         9 ~~~~~~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~V   72 (108)
T 2d92_A            9 LALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV   72 (108)
T ss_dssp             CCSSCSSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEE
T ss_pred             ccccCCceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            344556789999999989999999998762   2578999999999999999999999999986

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.44  E-value=2e-13  Score=83.79  Aligned_cols=57  Identities=32%  Similarity=0.594  Sum_probs=50.4

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCCC-CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~~-~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+++.|+|.|+ .||||+|.|+.+.. ..++||..|.+++||+++|+|++||+|++|
T Consensus        12 ~~~~~~~v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~V   69 (109)
T 1wi4_A           12 RDPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI   69 (109)
T ss_dssp             CCTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEE
T ss_pred             CCCcEEEEEEeCC-CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence            3467899999996 89999999998743 357999999999999999999999999986

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.44  E-value=3.2e-13  Score=84.96  Aligned_cols=57  Identities=28%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.+.|+|.|+..||||+|.|+.+.  ...++||.+|.+++||+++|.|++||+|++|
T Consensus        27 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~V   85 (130)
T 1i16_A           27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL   85 (130)
T ss_dssp             SEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEEC
T ss_pred             CCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            35778899999989999999999883  2468999999999999999899999999987

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.43  E-value=3.7e-13  Score=79.46  Aligned_cols=55  Identities=29%  Similarity=0.569  Sum_probs=49.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++++|+|.|+..+|||++.||.+.+    ..+++|..|.|++||++.|+|++||+|++|
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v   61 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV   61 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            6789999999899999999998742    358999999999999999999999999986

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.43  E-value=3.2e-13  Score=81.00  Aligned_cols=55  Identities=33%  Similarity=0.580  Sum_probs=49.8

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..+|||++.|+.+.+    ..+++|..|.+++||++.|+|++||+|++|
T Consensus         4 ~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   62 (102)
T 2i1n_A            4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV   62 (102)
T ss_dssp             EEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             eEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            5688999999899999999998742    469999999999999999999999999986

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.42  E-value=6.3e-13  Score=79.11  Aligned_cols=56  Identities=29%  Similarity=0.523  Sum_probs=51.1

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++.++|+|.|+..+|||++.++.+....+++|..|.|++||++.|+|++||+|++|
T Consensus         3 g~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v   58 (98)
T 2opg_A            3 GCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEV   58 (98)
T ss_dssp             CEEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEE
Confidence            56788999999999999999998765568999999999999999999999999986

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.41  E-value=3.8e-13  Score=80.58  Aligned_cols=57  Identities=25%  Similarity=0.494  Sum_probs=51.2

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.+.|+|.|+..+|||++.++.+.+    ..+++|..|.+++||++.|+|++||+|++|
T Consensus         5 ~~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   65 (101)
T 2jik_A            5 LVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV   65 (101)
T ss_dssp             GEEEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            346789999999999999999998853    469999999999999999999999999986

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.41  E-value=7.3e-13  Score=78.56  Aligned_cols=57  Identities=28%  Similarity=0.536  Sum_probs=51.4

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.++|+|.|+..+|||++.|+.+..  ..+++|..|.+++||++.|+|++||+|++|
T Consensus         3 ~g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~v   61 (96)
T 1d5g_A            3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV   61 (96)
T ss_dssp             TTCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEE
T ss_pred             CCCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence            467899999999999999999988732  468999999999999999999999999986

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.41  E-value=6.2e-13  Score=78.06  Aligned_cols=54  Identities=26%  Similarity=0.466  Sum_probs=48.5

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..+|||++.|+.+. ..+++|..|.|++||++.|+|++||+|++|
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~-~~~~~V~~V~~~spA~~aG~L~~GD~I~~i   55 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEP-GEPIYIGHIVPLGAADTDGRLRSGDELISV   55 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSST-TSCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CcEEEEEEECCCccCEEEEccccC-CCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            357899999999999999999874 456999999999999999999999999986

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=1.5e-13  Score=85.32  Aligned_cols=59  Identities=29%  Similarity=0.522  Sum_probs=50.9

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++.++|+|.|+..||||+|.|+.+.+  ..+++|..|.|++||++.|+|++||+|++|
T Consensus        21 ~~~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~V   81 (117)
T 2fne_A           21 QSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV   81 (117)
T ss_dssp             --CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             cCCCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            33467889999999899999999997642  358999999999999999999999999986

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=3.5e-13  Score=83.55  Aligned_cols=57  Identities=32%  Similarity=0.525  Sum_probs=50.8

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.+.|+|.|+..||||+|.|+.+.+    +.+++|..|.+++||++.|+|++||+|++|
T Consensus        22 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~V   82 (117)
T 2byg_A           22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV   82 (117)
T ss_dssp             EEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            357789999999899999999998742    458999999999999999999999999986

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=8.9e-13  Score=80.12  Aligned_cols=58  Identities=28%  Similarity=0.477  Sum_probs=51.9

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++.++|+|.|+..+|||++.++.+.+  ..+++|..|.|++||++.|+|++||+|++|
T Consensus         5 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   64 (110)
T 1um1_A            5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV   64 (110)
T ss_dssp             SCCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEE
T ss_pred             CCCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3568899999999889999999988743  468999999999999999999999999986

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=2.9e-13  Score=82.42  Aligned_cols=54  Identities=26%  Similarity=0.433  Sum_probs=48.2

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|+|.|...+|||+|.|+.+...+.+||..|.+++||+++|+|++||+|++|
T Consensus         7 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~V   60 (103)
T 1ufx_A            7 GTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV   60 (103)
T ss_dssp             SEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEE
T ss_pred             eEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence            567889898899999999999864455699999999999999999999999986

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=6.6e-13  Score=82.59  Aligned_cols=59  Identities=25%  Similarity=0.461  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        17 ~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+..+.++|+|.|+..+|||++.|+.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        14 ~~~~~~~~~v~l~~~~~glG~~~~~g~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~V   72 (123)
T 1ueq_A           14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEP-DEFLQVKSVIPDGPAAQDGKMETGDVIVYI   72 (123)
T ss_dssp             TTCCSEEEEEEEECCTTSCSEEEECCSSS-SCCCEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             ccCCCcEEEEEEEeCCCceeEEEecccCC-CCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            34567888999999988999999998773 578999999999999999999999999986

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=6.3e-13  Score=80.34  Aligned_cols=57  Identities=37%  Similarity=0.617  Sum_probs=50.8

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.++|+|.|+..+|||+|.++.+.     .+.+++|..|.|++||++.|+|++||+|++|
T Consensus         5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   66 (105)
T 1wha_A            5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI   66 (105)
T ss_dssp             CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEE
T ss_pred             CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            35678899999988999999999873     2579999999999999999999999999986

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.3e-13  Score=82.13  Aligned_cols=57  Identities=25%  Similarity=0.494  Sum_probs=51.1

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.|+|.|+..+|||+|.++.+.+    ..+++|..|.+++||++.|+|++||+|++|
T Consensus        15 ~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~v   75 (120)
T 2eno_A           15 LVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV   75 (120)
T ss_dssp             EEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEE
T ss_pred             CCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            356788999999999999999998742    569999999999999999999999999986

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.39  E-value=7.6e-13  Score=79.35  Aligned_cols=57  Identities=23%  Similarity=0.486  Sum_probs=51.1

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.+.+.|+|.|+..+|||++.++.+  ..+++|..|.|++||++.|+|++||+|++|
T Consensus         7 ~~~~~~~~v~l~k~~~glG~~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~v   63 (104)
T 3i4w_A            7 DIPREPRRIVIHRGSTGLGFNIVGGEX--GEGIFISFILAGGPADLSGELRKGDQILSV   63 (104)
T ss_dssp             CCCSSCEEEEEECBTTBTSEEEEECC---CCCEEEEEECTTSHHHHHCCCCTTEEEEEE
T ss_pred             CCCCccEEEEEEeCCCccCEEEECCCC--CCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            466788999999998899999999876  368999999999999999999999999986

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.38  E-value=6.4e-13  Score=81.88  Aligned_cols=58  Identities=34%  Similarity=0.501  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++++.+.|.|. ..+|||+|.|+.+....+++|..|.|++||++.|+|++||+|++|
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~i   70 (119)
T 1x6d_A           12 QLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI   70 (119)
T ss_dssp             SCTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEE
T ss_pred             CCCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3467888999886 789999999998865679999999999999999999999999986

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.38  E-value=4.6e-13  Score=84.00  Aligned_cols=63  Identities=19%  Similarity=0.374  Sum_probs=54.6

Q ss_pred             hhhcCCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         13 KKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        13 ~~~~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.-..+.++..+|+|.|+..+|||++.|+.+ ...+++|..|.++++|++.|+|++||+|++|
T Consensus         9 ~~~~~~~~g~~~~v~l~~~~~g~G~~i~g~~~-~~~~v~V~~V~~~spA~~aG~L~~GD~Il~v   71 (129)
T 2kpk_A            9 TRNPSELKGKFIHTKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSV   71 (129)
T ss_dssp             CSCTTTSCSEEEEEEEEECSSCCSEEEEEEEE-TTEEEEEEEECTTSHHHHHSSCCTTCEEEEE
T ss_pred             CCCchhcCCcEEEEEEEECCCcccEEEeCccC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            34445566788999999998899999999876 3578999999999999999999999999986

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.38  E-value=4.3e-13  Score=81.91  Aligned_cols=55  Identities=25%  Similarity=0.502  Sum_probs=49.2

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|. ..+|||+|.|+.+. ...++||.+|.|++||+++|+|++||+|++|
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~V   61 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV   61 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            6788999986 68999999998763 3679999999999999999999999999986

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=5.2e-13  Score=83.32  Aligned_cols=57  Identities=26%  Similarity=0.531  Sum_probs=50.6

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++++|+|.|+ ..+|||+|.|+.+..  ..++||..|.+++||++.|+|++||+|++|
T Consensus        23 ~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~i   82 (128)
T 2db5_A           23 GRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAI   82 (128)
T ss_dssp             TCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEE
T ss_pred             cCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            567899999999 479999999988742  358999999999999999999999999986

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.37  E-value=9.1e-13  Score=82.17  Aligned_cols=57  Identities=26%  Similarity=0.538  Sum_probs=50.1

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.+.|+|.|+ ..+|||+|.||.+.  ...++||..|.+++||+++|+|++||+|++|
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~V   81 (118)
T 3b76_A           22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV   81 (118)
T ss_dssp             EEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEE
T ss_pred             CCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            346788999998 68999999999863  3568999999999999999999999999986

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=77.82  Aligned_cols=55  Identities=27%  Similarity=0.515  Sum_probs=49.0

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC---CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~---~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+|+|.|+..+|||++.++.+..   ..+++|..|.|++||++.|+|++||+|++|
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~i   60 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV   60 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            4577999998889999999998643   569999999999999999999999999986

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.37  E-value=3.5e-13  Score=83.99  Aligned_cols=59  Identities=29%  Similarity=0.521  Sum_probs=46.1

Q ss_pred             CCCCcEEEEEEecCC-CcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSH-TGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~-~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.++|+|.|+. .+|||+|.||.+.+  ..++||..|.|++||++.|.|++||+|++|
T Consensus        20 s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~V   81 (120)
T 2iwo_A           20 FQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI   81 (120)
T ss_dssp             -----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             CCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEE
Confidence            345678899999995 59999999988632  358999999999999999889999999986

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.35  E-value=1.7e-12  Score=76.76  Aligned_cols=54  Identities=26%  Similarity=0.483  Sum_probs=47.8

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++.|+|.|+..+|||++.++.  ...+++|.+|.+++||++.|+|++||+|++|
T Consensus         3 ~~~r~v~l~k~~~~lG~~i~~~~--~~~~~~V~~v~~gspA~~aG~L~~GD~I~~i   56 (93)
T 3o46_A            3 DSVKIIRLVKNREPLGATIKKDE--QTGAIIVARIMRGGAADRSGLIHVGDELREV   56 (93)
T ss_dssp             -CCEEEEEEESSSCCCEEEEECT--TTCCEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             ccEEEEEEEeCCCCccEEEEecC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            46788999999889999999872  2578999999999999999999999999986

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.3e-12  Score=79.18  Aligned_cols=56  Identities=36%  Similarity=0.668  Sum_probs=49.0

Q ss_pred             CcEEEEEEecCCCcccEEEec---CCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAG---HKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~G---g~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.|+|.|...+|||+|.+   +.+.  ...++||..|.|++||++.|+|++||+|++|
T Consensus         8 ~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   68 (107)
T 1wf8_A            8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV   68 (107)
T ss_dssp             EEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEE
T ss_pred             ceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            357789999998899999999   5553  2469999999999999999999999999986

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.35  E-value=2e-12  Score=83.76  Aligned_cols=55  Identities=35%  Similarity=0.655  Sum_probs=50.3

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..+|||+|.||.+.+    ..++||..|.|++||++.|+|++||+|++|
T Consensus         5 ~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~v   63 (196)
T 3gsl_A            5 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV   63 (196)
T ss_dssp             EEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            5788999999999999999999853    468999999999999999999999999986

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.5e-12  Score=78.84  Aligned_cols=57  Identities=28%  Similarity=0.536  Sum_probs=51.4

Q ss_pred             CCcEEEEEEecCCCcccEEEe-----cCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLA-----GHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~-----Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.++|+|.|+..+|||+|.     ||.+..  ..+++|..|.+++||++.|+|++||+|++|
T Consensus         7 ~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   70 (108)
T 1q7x_A            7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV   70 (108)
T ss_dssp             SSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEE
T ss_pred             CCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            467899999999899999999     888742  478999999999999999999999999986

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.35  E-value=2.8e-12  Score=78.78  Aligned_cols=56  Identities=27%  Similarity=0.422  Sum_probs=49.6

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCC--------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRT--------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~--------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|. ..+|||+|.|+.+..        ..+++|..|.+++||++.|+|++||+|++|
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~v   78 (117)
T 2ehr_A           14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEV   78 (117)
T ss_dssp             CCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEE
T ss_pred             CCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence            35688999998 689999999998742        369999999999999999999999999986

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=3e-12  Score=77.55  Aligned_cols=56  Identities=25%  Similarity=0.508  Sum_probs=49.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+..+|||+|.|+.+.       ...++||..|.+++||++.|.|++||+|++|
T Consensus         7 ~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~v   69 (107)
T 1uhp_A            7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV   69 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEE
T ss_pred             cEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence            4678899999989999999998863       2468999999999999999789999999986

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.34  E-value=1.4e-12  Score=78.78  Aligned_cols=56  Identities=30%  Similarity=0.664  Sum_probs=48.5

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+..+|+| |+..+|||+|.|+.+.  ...+++|..|.+++||++.|+|++||+|++|
T Consensus         9 ~~~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~i   66 (106)
T 3axa_A            9 EPEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV   66 (106)
T ss_dssp             -CCEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEE
T ss_pred             CceEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            457788999 7889999999997652  3568999999999999999999999999986

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=79.29  Aligned_cols=56  Identities=39%  Similarity=0.703  Sum_probs=50.1

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.++|+|.|+..||||++.++.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        22 ~~~~~~v~l~~~~~glG~~l~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~V   77 (112)
T 2r4h_A           22 SMDFYTVELERGAKGFGFSLRGGREY-NMDLYVLRLAEDGPAERSGKMRIGDEILEI   77 (112)
T ss_dssp             -CCEEEEEEECBTTBTSEEEEECGGG-TCCEEEEEECTTSHHHHTTCCCTTCEEEEE
T ss_pred             CCceEEEEEEcCCCccCEEEeccccC-CCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            36789999999988999999998763 578999999999999999999999999986

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.34  E-value=2.5e-12  Score=74.68  Aligned_cols=52  Identities=21%  Similarity=0.415  Sum_probs=46.9

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+|+|.|+..||||++.++.+. ..+++|..|.|++||++.|+|++||+|++|
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~-~~~~~V~~v~~~spA~~aG~l~~GD~I~~v   53 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETGDVIVSV   53 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCST-TBCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEECCCCCCEEEEcccCC-CCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            4688999989999999998763 578999999999999999999999999986

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=75.60  Aligned_cols=54  Identities=30%  Similarity=0.645  Sum_probs=48.0

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|. ..+|||++.++.+  ..+++|..|.|++||++.|+|++||+|++|
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   57 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMV   57 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSS--SCSCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            35788999997 6899999998875  468999999999999999999999999985

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=76.64  Aligned_cols=55  Identities=29%  Similarity=0.601  Sum_probs=49.2

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|+|.|+..+|||++.++.+. ..+++|..|.+++||++.|.|++||+|++|
T Consensus         4 ~~~r~v~l~k~~~glG~~l~~~~~~-~~~~~V~~V~~~spA~~aGgl~~GD~I~~v   58 (93)
T 2dkr_A            4 GSSGVVELPKTDEGLGFNIMGGKEQ-NSPIYISRVIPGGVADRHGGLKRGDQLLSV   58 (93)
T ss_dssp             SCSCEEEEECCTTCCCEEEECSSSS-SCCCEEEEECTTSHHHHHCCCCTTCBEEEE
T ss_pred             CCCEEEEEEeCCCCccEEEecccCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            4567899999999999999998764 578999999999999999889999999986

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=1.5e-12  Score=78.50  Aligned_cols=54  Identities=26%  Similarity=0.478  Sum_probs=48.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++++|.|...+|||++.++.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus         9 ~~~~v~l~~~~~g~G~~i~~g~~~-~~~~~V~~V~~~spA~~aG~L~~GD~Il~i   62 (103)
T 1uep_A            9 KELDVHLRRMESGFGFRILGGDEP-GQPILIGAVIAMGSADRDGRLHPGDELVYV   62 (103)
T ss_dssp             EEECCEEESSSSSCCEEECCCCST-TSCCBEEEECTTSTTGGGTCCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCccCEEEeeecCC-CCCeEEEEeCCCChHHhCCCCCCCCEEEEE
Confidence            457788999989999999998864 578999999999999999999999999986

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.33  E-value=2.9e-12  Score=75.91  Aligned_cols=53  Identities=30%  Similarity=0.501  Sum_probs=47.4

Q ss_pred             cEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|.  ..+|||++.++.+  ..+++|..|.|++||++.|+|++||+|++|
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   57 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTD--EPGVFILDLLEGGLAAQDGRLSSNDRVLAI   57 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSS--SCSEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccC--CCCEEEEEeCCCChHHHCCCCCCCCEEEEE
Confidence            5788999986  4689999998876  468999999999999999999999999986

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.33  E-value=3e-12  Score=84.26  Aligned_cols=57  Identities=14%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCC-CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTK-MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~-~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++...|+|.|+..+|||+|.||.+... .++||..|.|++||+++|+|++||+|++|
T Consensus        16 ~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~v   73 (206)
T 3r0h_A           16 PNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDI   73 (206)
T ss_dssp             TTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            4677889999999999999999998533 58999999999999999999999999986

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=9.4e-13  Score=80.26  Aligned_cols=59  Identities=34%  Similarity=0.621  Sum_probs=51.0

Q ss_pred             CCCCcEEEEEEecC-CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERS-HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~-~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++...++|+|.|+ ..+|||+|.|+.+.        ...+++|..|.++++|++.|+|++||+|++|
T Consensus         5 p~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~v   72 (111)
T 1uju_A            5 SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV   72 (111)
T ss_dssp             CCSCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBB
T ss_pred             CCCCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            45566788999998 58999999999852        2468999999999999999999999999986

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.32  E-value=1.5e-12  Score=75.97  Aligned_cols=55  Identities=31%  Similarity=0.629  Sum_probs=48.3

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++.++|+|.|. ..+|||++.|+.+. ..+++|.+|.|++||++++.|++||+|++|
T Consensus         1 g~~~~v~l~~~~~~~lG~~i~~~~~~-~~~~~V~~V~~gspA~~~agl~~GD~I~~v   56 (87)
T 4e34_A            1 GPIRKVLLLKEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAV   56 (87)
T ss_dssp             CCCEEEEEECCTTBCCCEEEEEEGGG-TEEEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred             CCEEEEEEEECCCCcccEEEEccCCC-CCCEEEEEECCCCHHHhcCCCCCCCEEEEE
Confidence            35788999998 67999999999764 468999999999999997779999999986

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.31  E-value=5.1e-12  Score=74.19  Aligned_cols=52  Identities=33%  Similarity=0.589  Sum_probs=47.1

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..||||++.++.+  ..+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~r~v~l~r~~~g~G~~~~~~~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   54 (91)
T 1g9o_A            3 LPRLCCLEKGPNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEV   54 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTT--CSSEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             ccEEEEEEeCCCcccEEEEecCC--CCCEEEEEECCCCHHHHCC-CCCCCEEEEE
Confidence            45789999998899999999876  4689999999999999988 9999999986

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.31  E-value=9.7e-13  Score=80.49  Aligned_cols=57  Identities=26%  Similarity=0.581  Sum_probs=51.4

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.+.++|.|+..+|||++.++.+....+++|..|.+++||++.|+|++||+|++|
T Consensus        15 ~~~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   71 (116)
T 2dm8_A           15 PGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV   71 (116)
T ss_dssp             TTSCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEE
Confidence            467788999999899999999988764469999999999999999999999999986

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.31  E-value=1.9e-12  Score=78.94  Aligned_cols=55  Identities=38%  Similarity=0.660  Sum_probs=48.5

Q ss_pred             cEEEEEEecCCCcccEEEec---CCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAG---HKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~G---g~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+|+|.|+..+|||++.+   +.+.  ...+++|..|.|++||++.|+|++||+|++|
T Consensus         4 ~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~v   63 (113)
T 2g5m_B            4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV   63 (113)
T ss_dssp             EEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEE
T ss_pred             EEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            56789999998999999999   5542  2569999999999999999999999999986

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.30  E-value=2.6e-12  Score=77.55  Aligned_cols=57  Identities=25%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccC-CCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTG-SVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG-~L~~GD~ileV   76 (76)
                      ....++.++|.|+ ..+|||++.|+.+. ..+++|..|.|++||++.| ||++||+|++|
T Consensus        14 ~~~~~~~v~l~~~~~~~~G~~~~gg~~~-~~~~~V~~V~~~spA~~aG~rL~~GD~Il~i   72 (107)
T 3nfk_A           14 PHDNLVLIRMKPDENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI   72 (107)
T ss_dssp             --CCCEEEEECCCTTSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHSSSCCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCCEEEEccCCC-CCCeEEEEECCCCchHHcCCccCCCCEEEEE
Confidence            3456899999998 48999999999874 4689999999999999999 69999999986

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=3.6e-12  Score=78.63  Aligned_cols=58  Identities=28%  Similarity=0.511  Sum_probs=50.1

Q ss_pred             CCCcEEEEEEecCC-------CcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSH-------TGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~-------~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+-..+.|+|.|..       .+|||+|.|+.+.+    ..++||..|.|++||++.|+|++||+|++|
T Consensus         9 ~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~v   77 (117)
T 1ujd_A            9 YIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW   77 (117)
T ss_dssp             CSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEE
T ss_pred             CCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            44567889999886       79999999998742    358999999999999999999999999986

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.30  E-value=2.6e-12  Score=75.45  Aligned_cols=55  Identities=29%  Similarity=0.523  Sum_probs=48.8

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|. ..+|||++.++.+. ..+++|..|.|++||++.|.|++||+|++|
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~-~~g~~V~~V~~~spA~~aggl~~GD~I~~i   58 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGREN-KMPILISKIFKGLAADQTEALFVGDAILSV   58 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTTCCCTTEEEEEE
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCC-CCCEEEEEECCCCHHHhcCCCCCCCEEEEE
Confidence            45788999996 78999999998774 478999999999999998789999999986

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.30  E-value=8.2e-12  Score=78.92  Aligned_cols=62  Identities=24%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             hhcCCCCCcEEEEEEecC-CCcccEEEecCCCCC-----------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         14 KKYGSLGPDLVVVTLERS-HTGLGISLAGHKDRT-----------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        14 ~~~~~~~~e~~~v~L~k~-~~gLG~si~Gg~~~~-----------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|.+...+.++|+|.|. ..+|||+|.|+.+..           ..+++|..|.+++||++.| |++||+|++|
T Consensus        19 ~~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~V   92 (132)
T 3l4f_D           19 GSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEV   92 (132)
T ss_dssp             CCSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEE
T ss_pred             CCCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            344555567789999996 689999999998732           1379999999999999999 9999999986

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.29  E-value=5.1e-12  Score=83.34  Aligned_cols=56  Identities=38%  Similarity=0.635  Sum_probs=48.9

Q ss_pred             CcEEEEEEecCCCcccEEEec---CCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAG---HKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~G---g~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+..+|+|.|+..||||+|.+   +.+.  ...+|||..|.+++||+++|+|++||+|++|
T Consensus        79 ~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~V  139 (170)
T 3egg_C           79 LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV  139 (170)
T ss_dssp             SEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             ceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            467889999998899999999   4432  2468999999999999999999999999986

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.29  E-value=5.2e-12  Score=75.07  Aligned_cols=55  Identities=25%  Similarity=0.525  Sum_probs=48.2

Q ss_pred             cEEEEEEec-CCCcccEEEecCCCCC-----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLER-SHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k-~~~gLG~si~Gg~~~~-----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|+|.| ...+|||+|.++.+..     ..+++|..|.|++||++.|+|++||+|++|
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~i   65 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL   65 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            367899999 4889999999998743     248999999999999999999999999986

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.27  E-value=1.2e-11  Score=73.67  Aligned_cols=55  Identities=29%  Similarity=0.531  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|...+|||++.++.+. ..+++|..|.|++||++.|+|++||+|++|
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~-~~~~~V~~V~~~spA~~aG~l~~GD~I~~v   58 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEP-FDPIIISSLTKGGLAERTGAIHIGDRILAI   58 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSST-TSCCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCC-CCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            4678899988888899999988653 468999999999999999999999999986

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.27  E-value=8.8e-12  Score=75.33  Aligned_cols=61  Identities=28%  Similarity=0.480  Sum_probs=50.4

Q ss_pred             cCCCCCcEEEEEEe--cCCCcccEEEecCCCC----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         16 YGSLGPDLVVVTLE--RSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        16 ~~~~~~e~~~v~L~--k~~~gLG~si~Gg~~~----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++....+...++|.  +...+|||++.++.+.    ...+++|..|.|++||++.|+|++||+|++|
T Consensus         6 ~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~v   72 (108)
T 2jre_A            6 SDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV   72 (108)
T ss_dssp             CSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEE
T ss_pred             ccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            34444567889994  5588999999998763    2458999999999999999999999999986

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.27  E-value=4.5e-12  Score=76.64  Aligned_cols=55  Identities=31%  Similarity=0.629  Sum_probs=48.1

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|+|.|. ..+|||++.|+.+. ..+++|..|.|++||++.+.|++||+|++|
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~g~~~-~~~~~V~~V~~~s~A~~a~gL~~GD~Il~I   63 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAV   63 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHHTCCCSSEEEEEE
T ss_pred             CCcEEEEEEeCCCCccCEEEEeccCC-CCCEEEEEECCCCHHHHhCCCCCCCEEEEE
Confidence            45788999887 68999999999874 468999999999999998789999999986

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=6.9e-12  Score=77.42  Aligned_cols=56  Identities=25%  Similarity=0.469  Sum_probs=49.2

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.|+|.|. ..+|||++.++.+....++||..|.|++||++.|+|++||+|++|
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~I   70 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI   70 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEE
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            35688999998 489999999987754456999999999999999999999999986

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.27  E-value=1.1e-11  Score=76.92  Aligned_cols=54  Identities=24%  Similarity=0.358  Sum_probs=48.4

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|+|.|. ..+|||++.||.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~-~~~~~V~~v~~gspA~~aG~L~~GD~Il~i   73 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGV   73 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSC-CSSEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCC-CCCEEEEEeCCCCHHHHCCCCCCCCEEEEE
Confidence            4578899998 67999999999874 578999999999999999999999999986

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.26  E-value=7.5e-12  Score=76.90  Aligned_cols=57  Identities=25%  Similarity=0.510  Sum_probs=51.1

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.++|+|.|...||||++.++.+  ..+++|..|.+++||++.|+|++||+|++|
T Consensus        10 ~~~~~~~~v~l~k~~~glG~~l~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   66 (119)
T 1tp5_A           10 DIPREPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV   66 (119)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGG--GCCEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred             CCCCccEEEEEEECCCCccEEEecCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            456788999999998899999998875  368999999999999999999999999986

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.26  E-value=1.9e-11  Score=71.71  Aligned_cols=55  Identities=27%  Similarity=0.376  Sum_probs=48.5

Q ss_pred             CCCcEEEEEEecCC--CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSH--TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~--~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++++|+|.|..  .+|||++.++.+  ..+++|..|.+++||++.| |++||+|++|
T Consensus         3 ~~~~~~~v~l~k~~~~~~~G~~~~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~v   59 (91)
T 1m5z_A            3 TPVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV   59 (91)
T ss_dssp             SCCEEEEEEEECCTTCSSSSEEEEECTT--SSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCcceEEEEEEECCCCCCccEEEEeccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            46789999999973  589999999876  3789999999999999988 9999999986

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.25  E-value=1.3e-11  Score=76.44  Aligned_cols=54  Identities=28%  Similarity=0.520  Sum_probs=47.4

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.+.+.+. .||||+|.|+.+.....++|.+|.+++||++.|.|++||+|++|
T Consensus        18 ~~~~~~~~~~-~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~I   71 (118)
T 1v6b_A           18 DVRLLRIKKE-GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI   71 (118)
T ss_dssp             CEEEEEEESC-SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEE
T ss_pred             eEEEEEECCC-CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            5677788776 59999999998865567999999999999999889999999986

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=8e-12  Score=75.08  Aligned_cols=56  Identities=34%  Similarity=0.533  Sum_probs=49.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCC-CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~-~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.|+|.|+..||||++.++.+.. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        10 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~v   66 (104)
T 2djt_A           10 SGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI   66 (104)
T ss_dssp             CCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEE
T ss_pred             CceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            45688999999899999999987642 568999999999999999999999999986

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=1.2e-11  Score=76.07  Aligned_cols=56  Identities=25%  Similarity=0.434  Sum_probs=48.9

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhccc-CCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKT-GSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~d-G~L~~GD~ileV   76 (76)
                      .++.++|+|.|+ ..+|||++.|+.+. ..+++|..|.+++||++. |.|++||+|++|
T Consensus        13 ~~~~~~v~l~k~~~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~a~gGL~~GD~Il~i   70 (119)
T 2cs5_A           13 HDNLVLIRMKPDENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI   70 (119)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGG-TEEEEEEEECSSSTTTSSSSCCCTTCEEEEE
T ss_pred             CCCeEEEEEEeCCCCCcCEEEecccCC-CCCeEEEEECCCCHHHHhhcCCCCCCEEEEE
Confidence            356789999998 45699999999874 468999999999999998 689999999986

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.23  E-value=1e-11  Score=75.46  Aligned_cols=49  Identities=33%  Similarity=0.625  Sum_probs=41.0

Q ss_pred             EecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         28 LERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        28 L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+..+|||+|.||.+..    +.+++|.+|.|++||++.|+|++||+|++|
T Consensus         8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~V   60 (106)
T 4amh_A            8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV   60 (106)
T ss_dssp             ----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            3444789999999999853    348999999999999999999999999986

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.23  E-value=2.6e-11  Score=71.77  Aligned_cols=54  Identities=39%  Similarity=0.693  Sum_probs=47.7

Q ss_pred             cEEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..++++.+...+|||+|.++.+.     ...+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   61 (97)
T 2w4f_A            3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV   61 (97)
T ss_dssp             CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             eEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            457789999889999999998873     24789999999999999988 9999999985

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.23  E-value=5.7e-12  Score=77.23  Aligned_cols=57  Identities=26%  Similarity=0.506  Sum_probs=50.5

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.|+|.|. ..+|||++.|+.+..  ..+++|..|.+++||++.|+|++||+|++|
T Consensus        18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~i   77 (117)
T 2o2t_A           18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI   77 (117)
T ss_dssp             TSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            357899999998 689999999988632  468999999999999999999999999986

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=4.1e-11  Score=72.69  Aligned_cols=58  Identities=36%  Similarity=0.653  Sum_probs=50.7

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+...++|.+...+|||+|.+|.+.     ...+++|..|.+++||++.| |++||+|++|
T Consensus        11 ~~~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   73 (110)
T 1x5q_A           11 RIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV   73 (110)
T ss_dssp             CCCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             cCCcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4456778899999999999999999863     35789999999999999988 9999999986

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.22  E-value=2.4e-11  Score=71.25  Aligned_cols=52  Identities=21%  Similarity=0.489  Sum_probs=47.0

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..||||++.++.+  ..+++|..|.|++||++.| |++||+|++|
T Consensus         4 ~~r~v~l~k~~~g~G~~~~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~i   55 (90)
T 2he4_A            4 RPRLCHLRKGPQGYGFNLHSDKS--RPGQYIRSVDPGSPAARSG-LRAQDRLIEV   55 (90)
T ss_dssp             CCEEEEEECBTTBCCEEEEECSS--SSSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CcEEEEEEECCCCccEEEEccCC--CCCEEEEEECCCChHHHCC-CCCCCEEEEE
Confidence            46889999998899999998876  4689999999999999988 9999999985

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.22  E-value=6.6e-12  Score=78.59  Aligned_cols=59  Identities=29%  Similarity=0.370  Sum_probs=50.5

Q ss_pred             CCCCcEEEEEEecC--CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERS--HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~--~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.+.|+|.|.  ..+|||+|.++.+.        ...+++|+.|.+++||++.|+|++||+|++|
T Consensus        25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~v   93 (128)
T 1nf3_C           25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEV   93 (128)
T ss_dssp             TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEE
T ss_pred             cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            35577899999998  47999999998751        1247999999999999999999999999986

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.22  E-value=2.4e-11  Score=73.85  Aligned_cols=53  Identities=32%  Similarity=0.528  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.|+|.|...+|||++.++.+   .+++|..|.+++||++.|+|++||+|++|
T Consensus        14 ~~~~~v~l~~~~~~lG~~l~~~~~---~g~~V~~V~~~spA~~aG~l~~GD~I~~v   66 (111)
T 2dlu_A           14 GHVEEVELINDGSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKI   66 (111)
T ss_dssp             SEEEEEEEECCSSCCCEEEECCSS---SSBEEEEECTTSSHHHHTCCCSSCEEEEE
T ss_pred             CceEEEEEEeCCCccCEEEeccCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            357889999998899999998764   57999999999999999999999999986

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.21  E-value=4.2e-11  Score=72.60  Aligned_cols=60  Identities=23%  Similarity=0.442  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         17 GSLGPDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        17 ~~~~~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.-..+...++|.++..+|||++.++.+.  ...+++|..|.+++||++.|+|++||+|++|
T Consensus         6 ~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~i   67 (111)
T 2koj_A            6 TKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV   67 (111)
T ss_dssp             CSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEE
T ss_pred             CcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            33345677888999889999999988753  1368999999999999999999999999986

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=2.6e-11  Score=71.55  Aligned_cols=51  Identities=25%  Similarity=0.423  Sum_probs=45.2

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++.|+|.|+ ..+|||++.++.   ..+++|.+|.+++||++++.|++||+|++|
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~---~~~~~I~~V~~gspA~~~agL~~GD~I~~I   53 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNE---LNHCIVARIMHGGMIHRQGTLHVGDEIREI   53 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC---GGGEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            578999999 589999999753   357999999999999998889999999986

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.20  E-value=2e-11  Score=76.89  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=45.7

Q ss_pred             EEEEEEecC----------CCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS----------HTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~----------~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+.|.|.          ..+|||+|.||.+..  ..++||..|.+++||+++|+|++||+|++|
T Consensus        28 i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~i   93 (131)
T 1wfg_A           28 IGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW   93 (131)
T ss_dssp             EEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             eeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            455666654          679999999988742  459999999999999999999999999986

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=75.35  Aligned_cols=57  Identities=23%  Similarity=0.367  Sum_probs=49.1

Q ss_pred             CCcEEEEEEec-CCCcccEEEecCCCC----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLER-SHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k-~~~gLG~si~Gg~~~----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.|+|.| ...+|||++.++.+.    ...+++|..|.+++||++.|+|++||+|++|
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~v   74 (129)
T 2dmz_A           13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV   74 (129)
T ss_dssp             CEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEE
T ss_pred             CCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            35678899966 488999999998763    2468999999999999999999999999986

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.20  E-value=7.5e-11  Score=70.86  Aligned_cols=58  Identities=28%  Similarity=0.417  Sum_probs=47.5

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++++.|+|.|. ..+|||++.+... ....+++|.+|.+++||++++.|++||+|++|
T Consensus         6 ~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~I   65 (101)
T 2yt7_A            6 SGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI   65 (101)
T ss_dssp             TTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEE
T ss_pred             CCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            3467889999987 4799999985332 12347999999999999999999999999986

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.20  E-value=2.3e-11  Score=74.30  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+|+|.|. ..+|||++.+    ...+++|..|.|++||++.|+|++||+|++|
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~----~~~gv~V~~V~~gspA~~aG~L~~GD~Il~I   53 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP----NEIGCTIADLIQGQYPEIDSKLQRGDIITKF   53 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE----CSSSEEEEECCTTSCHHHHTTCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEe----CCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            4678999855 7899999987    2468999999999999999999999999986

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.19  E-value=2.4e-11  Score=70.92  Aligned_cols=52  Identities=31%  Similarity=0.453  Sum_probs=45.4

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+|+| ++..+|||++.||.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~~~v~l-~~~~~~G~~l~~g~~~-~~~~~V~~V~~~spA~~aG-l~~GD~I~~i   54 (88)
T 2uzc_A            3 SNYSVSL-VGPAPWGFRLQGGKDF-NMPLTISSLKDGGKAAQAN-VRIGDVVLSI   54 (88)
T ss_dssp             CEEEEEE-ESSSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             cEEEEEE-cCCCcccEEEECcCCC-CCCeEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            3567888 6678999999999874 5689999999999999988 9999999986

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.19  E-value=9.9e-12  Score=77.90  Aligned_cols=53  Identities=32%  Similarity=0.643  Sum_probs=44.7

Q ss_pred             EEEEEe-cCCCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLE-RSHTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~-k~~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+|+|. +...||||+|.++.+.   ...++||..|.+++||+++|+|++||+|++|
T Consensus        27 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~V   83 (127)
T 1wg6_A           27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV   83 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEE
T ss_pred             EEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEE
Confidence            445665 4588999999998763   1358999999999999999999999999986

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.19  E-value=1.3e-11  Score=86.52  Aligned_cols=56  Identities=29%  Similarity=0.487  Sum_probs=50.5

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.++|+|.|. ..||||+|.||.+. ..++||..|.+++||++++.|++||+|++|
T Consensus        75 ~~~~r~V~L~k~~~~glGf~I~gg~d~-~~gi~V~~V~~gspA~~~aGL~~GD~Il~V  131 (263)
T 1z87_A           75 LLQRRRVTVRKADAGGLGISIKGGREN-KMPILISKIFKGLAADQTEALFVGDAILSV  131 (263)
T ss_dssp             SCSSEEECCCTTTTCCCCCEEEEETTT-TEEEEEEECCTTSHHHHCTTCCSSCEEEEE
T ss_pred             CCccEEEEEEeCCCCCEeEEEeeccCC-CCCEEEEEECCCCHHHHhCCCCCCCEEEEE
Confidence            346789999998 68999999999885 578999999999999998889999999986

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=1.2e-11  Score=75.00  Aligned_cols=58  Identities=28%  Similarity=0.498  Sum_probs=51.6

Q ss_pred             CCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        17 ~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .....+.+.|+|.|...+|||++.++.+  ..+++|..|.+++||++.|+|++||+|++|
T Consensus        10 ~~~~~~~~~v~l~k~~~glG~~l~~~~~--~~gv~V~~V~~~s~A~~aG~L~~GD~Il~V   67 (113)
T 1um7_A           10 GGDAREPRKIILHKGSTGLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSV   67 (113)
T ss_dssp             CCCCCSEEEEEEECCSSCSSBCCBCCST--TCCCBCCCBCSSSHHHHTTCCCTTCEEEEE
T ss_pred             CcCCCceEEEEEEECCCcccEEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            3455688999999998899999998876  468999999999999999999999999986

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.18  E-value=6.1e-11  Score=70.48  Aligned_cols=54  Identities=24%  Similarity=0.444  Sum_probs=45.0

Q ss_pred             CcEEEEEEecC-CCcccEEEec-------CCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAG-------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~G-------g~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+ ..+|||+|.+       +.+ ...+++|..|.+++||++.| |++||+|++|
T Consensus         3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~i   64 (96)
T 2ego_A            3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQR-VEMVTFVARVHESSPAQLAG-LTPGDTIASV   64 (96)
T ss_dssp             CCEEEEEEECCTTCCCSEEEEEEEC--------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEE
T ss_pred             CccEEEEEEeCCCCCccEEEEeccccccCCCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            35688999999 4799999997       222 24689999999999999988 9999999986

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.18  E-value=2.7e-11  Score=71.45  Aligned_cols=54  Identities=17%  Similarity=0.334  Sum_probs=46.7

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |.+.+.++|.|+..+|||++.++.+.  .+++|..|.+++||++.| |++||+|++|
T Consensus         3 p~~~r~v~l~~~~~~~G~~l~~~~~~--~~~~V~~v~~~spA~~aG-l~~GD~I~~i   56 (95)
T 3r68_A            3 PHQPRVVVIKKGSNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVVAV   56 (95)
T ss_dssp             CCCCEEEEEECBTTBCSCEEEEC--C--CSEEEECCCTTSHHHHHT-CCTTEEEEEE
T ss_pred             CCCcEEEEEecCCCcccEEEEecCCC--CCEEEEEECCCCHHHHCC-CCCCCEEEEE
Confidence            45668899999999999999987663  589999999999999998 9999999986

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=3.9e-11  Score=73.54  Aligned_cols=70  Identities=29%  Similarity=0.463  Sum_probs=52.9

Q ss_pred             CCCCCchhhhhhhcCCC----CCcEEEEEEecCCC-cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106          3 SFGNFSSDKVKKKYGSL----GPDLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus         3 ~~~~~~~~~~~~~~~~~----~~e~~~v~L~k~~~-gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |+|+.+.......|...    ..++++|+|.|... +|||++.+.    ..+++|..|.+++||++.|.|++||+|++|
T Consensus         2 ss~s~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~lG~~i~~~----~~gv~V~~V~~~spA~~aGll~~GD~I~~v   76 (113)
T 1va8_A            2 SSGSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNE----MDSVIISRIVKGGAAEKSGLLHEGDEVLEI   76 (113)
T ss_dssp             CCCCCSSCSCCCCSSCCSEETTEECEEEEEEECTTCCCCEEEEEC----SSSEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             CCCCCCCCCccccccccccCCCCceEEEEEEeCCCCceeEEEEeC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            34444444433333332    24678899999965 999999876    368999999999999999977999999986

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.18  E-value=5.8e-11  Score=69.83  Aligned_cols=55  Identities=25%  Similarity=0.527  Sum_probs=47.5

Q ss_pred             cEEEEEEecCCCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+++|.++..+|||++.++.+.   ...+++|..|.+++||++.|+|++||+|++|
T Consensus         4 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~v   61 (97)
T 2iwn_A            4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV   61 (97)
T ss_dssp             EEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEE
Confidence            456788888888999999988652   2468999999999999999999999999986

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.18  E-value=8e-11  Score=69.62  Aligned_cols=51  Identities=29%  Similarity=0.517  Sum_probs=43.3

Q ss_pred             EEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+|+|.|+. +|||+|.||.+.       ...+++|..|.|++||++  .|++||+|++|
T Consensus         4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~v   61 (95)
T 1mfg_A            4 EIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQA   61 (95)
T ss_dssp             EEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT--TCCTTCEEEEE
T ss_pred             EEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh--CCCCCCEEEEE
Confidence            4568888865 999999998752       346899999999999999  69999999986

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.17  E-value=9.7e-11  Score=70.57  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=47.2

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCC-----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~-----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+ ..+|||++.|+.+.+     ..+++|..|.|++||+  ..|++||+|++|
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~--agl~~GD~I~~v   65 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV   65 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB--TTBCTTCEEEEE
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh--hCCCCCCEEEEE
Confidence            46789999999 589999999988742     4699999999999999  579999999986

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.17  E-value=6.3e-11  Score=73.09  Aligned_cols=55  Identities=24%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             CcEEEEEEecCC-CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~-~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+. .+|||++.++.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        23 ~~~~~V~l~~~~~~~lG~~l~~~~~~-~~~~~V~~V~~gspA~~aG~L~~GD~I~~I   78 (114)
T 2gzv_A           23 MVPGKVTLQKDAQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGV   78 (114)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEECCC---CCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCCEEEEEEECCCCcEeEEEEeCCCC-CCCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            456889999994 5699999998764 468999999999999999999999999986

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=7.1e-11  Score=71.21  Aligned_cols=54  Identities=26%  Similarity=0.515  Sum_probs=47.6

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|. ..+|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   68 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKAS-QLGIFISKVIPDSDAHRAG-LQEGDQVLAV   68 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSS-CCCCEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCC-CCCEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            45688999998 48999999998764 4689999999999999988 9999999986

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.16  E-value=5.1e-11  Score=71.49  Aligned_cols=55  Identities=29%  Similarity=0.508  Sum_probs=46.6

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+..+|+|.|+. +|||++.||.+.       ...+++|..|.|++||++  .|++||+|++|
T Consensus         8 ~~~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~v   69 (103)
T 1n7t_A            8 LAKQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQA   69 (103)
T ss_dssp             SSCCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS--SCCTTCEEEEE
T ss_pred             cccEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH--CCCCCCEEEEE
Confidence            34566789999875 999999998752       356899999999999999  69999999986

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=4.8e-11  Score=73.28  Aligned_cols=53  Identities=25%  Similarity=0.557  Sum_probs=46.2

Q ss_pred             cEEEEEEecCC-CcccEEEecCCCCC-----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSH-TGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~-~gLG~si~Gg~~~~-----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+. .+|||+|.|+.+.+     ..+++|..|.|++||+  +.|++||+|++|
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~--~gL~~GD~I~~V   72 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV   72 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEE
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc--ccCCCCCEEEEE
Confidence            56789999984 89999999998742     4689999999999995  779999999986

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.2e-11  Score=73.91  Aligned_cols=55  Identities=35%  Similarity=0.652  Sum_probs=48.6

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+...++|.|+..||||++.++.+. ..+++|..|.+++||++.|+|++||+|++|
T Consensus        10 ~~~~~v~l~~~~~g~G~~~~~~~~~-~~~~~V~~V~~~spA~~aG~l~~GD~I~~v   64 (103)
T 1wfv_A           10 FDYFTVDMEKGAKGFGFSIRGGREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEI   64 (103)
T ss_dssp             SCCEECCEECCTTSSSBCCEEETTT-TEEEECCCBCTTSHHHHHCSSCTTCEEEEE
T ss_pred             ceEEEEEEecCCCcCCEEEeccccC-CCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3567788988888999999998874 468999999999999999999999999986

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.14  E-value=2e-11  Score=71.84  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=45.9

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+..+|||++.+..+  ..+++|..|.|++||++.| |++||+|++|
T Consensus         2 ~~pr~v~l~k~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   54 (91)
T 2vsp_A            2 MKPKLCRLAKGENGYGFHLNAIRG--LPGSFIKEVQKGGPADLAG-LEDEDVIIEV   54 (91)
T ss_dssp             CCEEEEEEECBTTBTSCCCBCCTT--CSCCBC-CCCTTSHHHHTT-CCTTCEEEEE
T ss_pred             CCcEEEEEEeCCCcccEEEEeccC--CCCeEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            357899999998899999998765  3678999999999999988 9999999986

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.14  E-value=8.9e-11  Score=72.75  Aligned_cols=58  Identities=22%  Similarity=0.388  Sum_probs=49.7

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCC---CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKD---RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~---~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.++|+|.|+ ..+|||+|.++..   ....+++|..|.+++||++.|+|++||+|++|
T Consensus        12 ~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~i   73 (122)
T 1v5q_A           12 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI   73 (122)
T ss_dssp             CCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEE
T ss_pred             ccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3457889999998 6899999999843   23467999999999999999999999999986

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.14  E-value=6.3e-11  Score=78.37  Aligned_cols=58  Identities=33%  Similarity=0.505  Sum_probs=51.1

Q ss_pred             CCCCCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         17 GSLGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        17 ~~~~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.+++.|+|.|. ..+|||++.|+.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus        79 ~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~-~~~~~V~~V~~gspA~~aG-L~~GD~Il~v  137 (192)
T 3k1r_A           79 PRRSRKLKEVRLDRLHPEGLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRI  137 (192)
T ss_dssp             CCCCSSCEEEEEETTSTTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTEEEEEE
T ss_pred             CCCCCceEEEEEEeCCCCceeEEEEccccc-CCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            345567889999998 78999999998764 5789999999999999999 9999999986

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.14  E-value=8.2e-11  Score=69.68  Aligned_cols=54  Identities=26%  Similarity=0.447  Sum_probs=46.2

Q ss_pred             cEEEEEEecCCCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|+|.|+..+|||++.+..+. ...+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   57 (96)
T 2v90_A            3 KPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV   57 (96)
T ss_dssp             CCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEE
T ss_pred             CCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            457899999988999999984432 24589999999999999988 9999999986

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.13  E-value=9.8e-11  Score=70.98  Aligned_cols=51  Identities=29%  Similarity=0.488  Sum_probs=44.9

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|.|. ..+||+++....+   .+++|.+|.|++||++.|+|++||+|++|
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~---~gv~V~~V~~gspA~~aG~L~~GD~Il~I   64 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEK---QSCTVARILHGGMIHRQGSLHVGDEILEI   64 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTT---CCEEEEEECSSSHHHHHTCCCTTCEEEEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCC---CCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            467999987 6799999986543   58999999999999999999999999986

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.13  E-value=1.7e-10  Score=69.94  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=46.0

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCC-----------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRT-----------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~-----------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.++|.|. ..+|||+|.++.+..           ..+++|..|.+++||++.| |++||+|++|
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~v   72 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEV   72 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4678899865 789999999998732           2379999999999999988 9999999986

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.12  E-value=7.6e-11  Score=69.94  Aligned_cols=46  Identities=20%  Similarity=0.358  Sum_probs=40.8

Q ss_pred             cEEEEEEecCC-CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~-~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+. .+|||++.+|        +|.++.+++||++.| |++||+|++|
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g--------~I~~v~~gspA~~aG-l~~GD~Il~V   50 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEI   50 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSEEEEEE
T ss_pred             ceEEEEEEECCCCCeEEEEECC--------EEEEecCCCHHHHcC-CCCCCEEEEE
Confidence            46889999994 5799999876        489999999999999 8999999986

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.12  E-value=9.6e-11  Score=69.83  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+++|.|. ..+|||++.+.    ..+++|..|.|++||++.|+|++||+|++|
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~I   59 (96)
T 2qkv_A            8 EKFNVDLMKKAGKELGLSLSPN----EIGCTIADLIQGQYPEIDSKLQRGDIITKF   59 (96)
T ss_dssp             CCEEEEEECBTTBCCCEEEEEC----SSSEEEEEECTTSCHHHHHHCCTTCEEEEE
T ss_pred             ceEEEEEEeCCCCCccEEEEeC----CCcEEEEEeCCCChHHhcCCCCCCCEEEEE
Confidence            4577899765 78999999872    367999999999999999999999999986

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=4.1e-11  Score=72.02  Aligned_cols=54  Identities=31%  Similarity=0.417  Sum_probs=47.3

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++..+|+|. +..+|||++.||.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus         3 ~g~~~~v~l~-~~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-L~~GD~I~~i   56 (103)
T 1wf7_A            3 SGSSGSVSLV-GPAPWGFRLQGGKDF-NMPLTISSLKDGGKASQAH-VRIGDVVLSI   56 (103)
T ss_dssp             CCCCEEEEEE-SSSCCSCCEEEETTT-TEEEEECCCCTTCHHHHTT-CCTTCBEEEE
T ss_pred             CCCEEEEEEe-CCCccCEEEeccccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4567889997 568999999999885 5679999999999999988 9999999985

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.12  E-value=1.6e-10  Score=69.17  Aligned_cols=53  Identities=17%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+..+|||++.++.+  ..+++|..|.+++||++.| |++||+|++|
T Consensus         5 ~~~r~v~l~k~~~g~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   57 (102)
T 2d90_A            5 SSGRVVVIKKGSNGYGFYLRAGPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAV   57 (102)
T ss_dssp             SSSEEEEEECCSSSSSCEEEECSS--SSSEEEECCCTTSTTTTTT-CCTTCEEEEE
T ss_pred             CCCEEEEEeeCCCCccEEEEeecC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            356889999998899999998654  4689999999999999988 9999999986

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=3e-10  Score=69.43  Aligned_cols=56  Identities=18%  Similarity=0.334  Sum_probs=46.9

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCC------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRT------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|. ..+|||+|.++.+..      ..+++|..|.+++||+++..|++||+|++|
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~i   71 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV   71 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEE
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEE
Confidence            35678999886 689999999987642      126799999999999997779999999986

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=70.75  Aligned_cols=58  Identities=24%  Similarity=0.458  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+...+.|.+...+|||++.++.+..  ..+++|..|.|++||++.|+|++||+|++|
T Consensus        27 ~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~I   86 (121)
T 2kom_A           27 KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV   86 (121)
T ss_dssp             CSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEE
T ss_pred             cCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3446678888888889999999887531  368999999999999999999999999986

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.5e-11  Score=72.22  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=47.6

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++++.++++.+. ..+|||++.|+.+. ..+++|..|.|++||++.|.|++||+|++|
T Consensus         6 ~~~~~~~~~v~~~~~~~~G~~~~gg~~~-~~~v~V~~V~~~spA~~agGL~~GD~I~~i   63 (100)
T 2edp_A            6 SGGSFQYVPVQLQGGAPWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNI   63 (100)
T ss_dssp             CCCCCEEEEEECCSCSCCCCCEEEEGGG-TEEEEECCCCTTSHHHHHTSCCTTCEEEEE
T ss_pred             CCCCcEEEEEEECCCCCcCEEEeccCCC-CCCeEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            3456677777665 57999999998874 468999999999999999789999999986

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.10  E-value=1.1e-10  Score=68.31  Aligned_cols=51  Identities=37%  Similarity=0.540  Sum_probs=43.9

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+|++.+ ..+|||++.|+.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         4 ~~~v~~~~-~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~i   54 (89)
T 2q3g_A            4 SFKVVLEG-PAPWGFRLQGGKDF-NVPLSISRLTPGGKAAQAG-VAVGDWVLSI   54 (89)
T ss_dssp             EEEEEEES-SSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             EEEEEEcC-CCcccEEEECcCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            45677764 58999999998874 5689999999999999988 9999999986

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=1.1e-10  Score=69.83  Aligned_cols=56  Identities=32%  Similarity=0.650  Sum_probs=48.8

Q ss_pred             CCCcEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+++++.|.|.  ..+|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus         5 ~~~~~~~v~l~~~~~~~~lG~~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   62 (101)
T 1uez_A            5 SSGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRV   62 (101)
T ss_dssp             CSCCCEEECCCCCCTTTCSSEEEEECTTT-TCCEEEEEECTTSHHHHHT-CCSSCCEEEE
T ss_pred             CCCccEEEEEEECCCCCcccEEEeCCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4567888999874  67999999998774 4689999999999999988 9999999986

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.10  E-value=1.7e-10  Score=75.98  Aligned_cols=57  Identities=23%  Similarity=0.382  Sum_probs=50.5

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.++|+|.|+ ..||||++.++.+.   ...+++|..|.|++||++.|+|++||+|++|
T Consensus         4 ~~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~v   64 (196)
T 1p1d_A            4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI   64 (196)
T ss_dssp             CCEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEE
T ss_pred             ccEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            457889999999 68999999999763   2468999999999999999999999999985

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.09  E-value=1.6e-10  Score=89.25  Aligned_cols=55  Identities=35%  Similarity=0.655  Sum_probs=50.3

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..||||+|.||.+.+    ..++||+.|.|++||+++|+|++||+|++|
T Consensus        59 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~V  117 (721)
T 2xkx_A           59 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV  117 (721)
T ss_pred             eEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEE
Confidence            5688999999889999999999853    578999999999999999999999999986

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.7e-11  Score=71.18  Aligned_cols=53  Identities=28%  Similarity=0.476  Sum_probs=47.1

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|+|.|+..+|||++.+..+  ..+++|..|.+++||++.| |++||+|++|
T Consensus         7 ~~~r~v~l~k~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~v   59 (106)
T 2eei_A            7 GQPRLCYLVKEGGSYGFSLKTVQG--KKGVYMTDITPQGVAMRAG-VLADDHLIEV   59 (106)
T ss_dssp             SSSEEEEEECCSSSCSCCEECCSS--CCSCEECCCCTTSHHHHHT-CCSSEEEEEE
T ss_pred             CCCEEEEEEECCCCCCEEEEeccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            456889999998999999997754  4689999999999999998 9999999986

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=6.5e-11  Score=70.16  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=45.7

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..++.|+|.|. ..+|||++.+.    ..+++|.+|.|++||++.|.|++||+|++|
T Consensus         4 ~~~~r~v~l~k~~~~~lG~~i~~~----~~~v~V~~V~~~spA~~ag~L~~GD~I~~i   57 (91)
T 2e7k_A            4 GSSGRMVGIRKTAGEHLGVTFRVE----GGELVIARILHGGMVAQQGLLHVGDIIKEV   57 (91)
T ss_dssp             CCCSCBCCBCCCTTCCCCEEEEES----SSSEEEEEECSSSHHHHHCCCCTTCEEEEE
T ss_pred             CCCcEEEEEEECCCCcEeEEEEec----CCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            345677888876 77999999982    468999999999999999999999999986

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.08  E-value=3.2e-10  Score=67.29  Aligned_cols=51  Identities=24%  Similarity=0.502  Sum_probs=45.3

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|.|+..||||++.++.+  ..+++|..|.+++||++.| |++||+|++|
T Consensus        10 ~~~~~l~~~~~g~G~~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   60 (98)
T 2jxo_A           10 PRLCTMKKGPSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEV   60 (98)
T ss_dssp             CEEEEEECTTTCCCEEEECCCS--SSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             cEEEEEEeCCCcccEEEEecCC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4668899998899999998775  3589999999999999988 9999999986

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.07  E-value=1.3e-10  Score=67.22  Aligned_cols=50  Identities=28%  Similarity=0.424  Sum_probs=42.7

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|. +..+|||++.|+.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~v~l~-~~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~v   52 (85)
T 1rgw_A            3 YSVTLT-GPGPWGFRLQGGKDF-NMPLTISRITPGSKAAQSQ-LSQGDLVVAI   52 (85)
T ss_dssp             EEEEEC-CSSCCCEEECCCGGG-TSCCBEEEECTTSHHHHSS-CCCCSBEEEE
T ss_pred             EEEEEe-CCCccCEEEEeccCC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            567884 567999999998874 4679999999999999965 9999999986

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1e-10  Score=72.68  Aligned_cols=57  Identities=32%  Similarity=0.454  Sum_probs=47.5

Q ss_pred             CCCcEEEEEEecCCC---cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHT---GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~---gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.+.++|.|...   +|||+|.+..+....+++|..|.+++||++.| |++||+|++|
T Consensus        12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~I   71 (114)
T 2d8i_A           12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEI   71 (114)
T ss_dssp             SCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEE
T ss_pred             ccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence            445789999999843   79999998554323589999999999999988 9999999986

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.07  E-value=3.6e-10  Score=68.67  Aligned_cols=57  Identities=32%  Similarity=0.510  Sum_probs=45.5

Q ss_pred             CCCcEEEEEEecCC---CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSH---TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~---~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.-+.+.++|.|+.   .+|||++.+..+....+++|..|.|++||++.| |++||+|++|
T Consensus         3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~v   62 (94)
T 3kzd_A            3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEI   62 (94)
T ss_dssp             -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            34467889999984   389999998655435689999999999999987 9999999986

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.06  E-value=6.7e-10  Score=65.67  Aligned_cols=51  Identities=27%  Similarity=0.561  Sum_probs=45.3

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +...++|.|.|+..+|||++.+.     .+++|..|.+++||++.| |++||+|++|
T Consensus         6 ~~~~r~v~l~~~~~~~G~~l~~~-----~g~~V~~V~~~spA~~aG-L~~GD~I~~i   56 (93)
T 2dls_A            6 SGVQRCVIIQKDQHGFGFTVSGD-----RIVLVQSVRPGGAAMKAG-VKEGDRIIKV   56 (93)
T ss_dssp             CCCEEEEEEECSSSSCCEEEECS-----SSCEEEEECSSSTTTTTT-CCSSCEEEEE
T ss_pred             CCCCEEEEEEeCCCceeEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            45678899999989999999863     468999999999999988 9999999986

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.64  E-value=1.5e-11  Score=75.90  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=47.9

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++++|.|.|. ..+|||++.++.+. ..+++|..|.|++||++++.|++||+|++|
T Consensus        26 ~~~~~v~l~k~~~~glG~~l~~g~~~-~~gv~V~~V~~~spA~~~aGL~~GD~Il~I   81 (112)
T 2lob_A           26 QGIRKVLLLKEDHEGLGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAV   81 (112)
Confidence            35678899887 68999999998874 468999999999999997779999999986

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.06  E-value=2.8e-10  Score=68.10  Aligned_cols=53  Identities=25%  Similarity=0.518  Sum_probs=43.2

Q ss_pred             EEEEEEecCC----CcccEEEecCCCC-----------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSH----TGLGISLAGHKDR-----------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~----~gLG~si~Gg~~~-----------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+++.|..    .+|||++.|+.+.           ...+++|..|.|++||++.| |++||+|++|
T Consensus         5 ~~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~i   72 (104)
T 3sfj_A            5 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV   72 (104)
T ss_dssp             EEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             eEEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            3456666652    2699999988873           24689999999999999998 9999999985

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.05  E-value=2.4e-10  Score=72.79  Aligned_cols=57  Identities=23%  Similarity=0.473  Sum_probs=47.2

Q ss_pred             CCCcEEEEEEecCC----CcccEEEecCCCC-----------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSH----TGLGISLAGHKDR-----------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~----~gLG~si~Gg~~~-----------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+.+.|+|.|..    .+|||++.||.+.           ...+++|..|.|++||++.| |++||+|++|
T Consensus        20 ~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~v   91 (139)
T 2vz5_A           20 FQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV   91 (139)
T ss_dssp             --CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEE
Confidence            45678899998863    3899999998762           24689999999999999998 9999999986

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=1.7e-10  Score=73.06  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=46.6

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.++|.|+..+|||++.+.    ..+++|..|.+++||++.|+|++||+|++|
T Consensus        26 ~~~~~~~l~k~~~glG~~i~~~----~~~v~V~~V~~gspA~~aG~L~~GD~Il~V   77 (126)
T 1wif_A           26 NKVIQTKLTVGNLGLGLVVIQN----GPYLQISHLINKGAAASDGILQPGDVLISV   77 (126)
T ss_dssp             CCEEEEEEECCTTCCCCCEEEE----TTEEEECCCCTTSSGGGCSSSCTTCBEEEE
T ss_pred             CceEEEEEecCCceEeEEEEcC----CCcEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            4677899999999999999873    367999999999999999999999999986

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=3.5e-10  Score=67.56  Aligned_cols=54  Identities=28%  Similarity=0.423  Sum_probs=43.7

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCC--------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRT--------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~--------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++.|.|. ...|||++.++.+..        ..+++|..|.|++||++.|+|++||+|++|
T Consensus         5 p~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~i   67 (103)
T 2fcf_A            5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV   67 (103)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEE
T ss_pred             CEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEE
Confidence            478899888 478999999977621        258999999999999999999999999986

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.05  E-value=4.3e-10  Score=65.58  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|+|.|+..||||++.+..+  ..+++|..+ +++||+  ..|++||+|++|
T Consensus         2 ~~~~~v~l~k~~~g~G~~~~~~~~--~~~~~v~~v-~~spA~--aGl~~GD~I~~v   52 (88)
T 3bpu_A            2 MELITVHIVKGPMGFGFTIADSPG--GGGQRVKQI-VDSPRS--RGLKEGDLIVEV   52 (88)
T ss_dssp             EEEEEEEEECBTTBSSCEEEECTT--SSSEEEEEC-CC--CC--TTCCTTCEEEEE
T ss_pred             CcEEEEEEEcCCCceeEEEEecCC--CCcEEEEEe-cCChhH--hCCCCCCEEEEE
Confidence            478899999999999999997654  368999987 999999  469999999986

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=4.1e-10  Score=66.25  Aligned_cols=49  Identities=22%  Similarity=0.432  Sum_probs=43.8

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..+|||++.+.     .+++|..|.+++||++.| |++||+|++|
T Consensus         3 ~~r~v~l~~~~~g~G~~l~~~-----~~~~V~~V~~~spA~~aG-l~~GD~I~~v   51 (91)
T 2f5y_A            3 RYRQITIPRGKDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQL   51 (91)
T ss_dssp             EEEEEEEECBTTBTSEEEECS-----SSCEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             ceEEEEEEeCCCCccEEEecC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            468899999989999999864     358999999999999988 9999999986

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.04  E-value=3.6e-10  Score=70.55  Aligned_cols=62  Identities=26%  Similarity=0.351  Sum_probs=46.2

Q ss_pred             hhcCCCCCcEEEEEEecC-CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         14 KKYGSLGPDLVVVTLERS-HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        14 ~~~~~~~~e~~~v~L~k~-~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++|..... .+++++.|. ..+|||++.++.+.        ...+++|..|.|++||++.|+|++||+|++|
T Consensus        17 d~~s~~~~-p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~V   87 (123)
T 2iwq_A           17 NLYFQSMQ-PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV   87 (123)
T ss_dssp             ------CC-CEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEE
T ss_pred             cCCcccCC-CEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            44544433 377889888 57999999987652        1358999999999999999999999999986

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=4.3e-10  Score=67.17  Aligned_cols=56  Identities=29%  Similarity=0.489  Sum_probs=47.7

Q ss_pred             CCCcEEEEEEecCC-CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~-~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ....+++|+|.|.. ..|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus         7 ~~~~~~~v~l~~~~~~~lG~~~~~~~~~-~~gv~V~~V~~~spA~~aG-L~~GD~I~~i   63 (100)
T 2eeh_A            7 GSDIIHSVRVEKSPAGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKITEV   63 (100)
T ss_dssp             CCCEECCEEECCCSSSSCSEEEECCTTT-TCCEEEEEECTTSHHHHHT-CCSSCEEEEE
T ss_pred             CCCeEEEEEEEECCCCCccEEEEccccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            34567889999984 4699999988763 4689999999999999988 9999999986

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2.2e-10  Score=67.81  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.|+|. +..+|||++.||.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         8 ~~~~v~l~-~~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~i   59 (94)
T 2eeg_A            8 MPHSVTLR-GPSPWGFRLVGGRDF-SAPLTISRVHAGSKAALAA-LCPGDLIQAI   59 (94)
T ss_dssp             CCEEEEEC-CSSCCSCCEECCTTT-TSCCEECCCCSSSHHHHTT-CCTTCEEEEE
T ss_pred             ceEEEEEe-CCCccCEEEECccCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            34678884 457999999999885 5689999999999999987 9999999986

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.02  E-value=3.7e-10  Score=65.75  Aligned_cols=48  Identities=21%  Similarity=0.386  Sum_probs=40.8

Q ss_pred             EEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        26 v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++ ++..+|||++.++.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         6 v~~-~~~~~lG~~l~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   53 (87)
T 2pa1_A            6 VDV-AGPAPWGFRITGGRDF-HTPIMVTKVAERGKAKDAD-LRPGDIIVAI   53 (87)
T ss_dssp             EEE-CSSSCCSEEEEEEGGG-TEEEEEEEECSSSHHHHTT-CCTTCEEEEE
T ss_pred             EEE-CCCCccCEEEecccCC-CCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            444 4478999999998874 5789999999999999966 9999999985

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.01  E-value=1.3e-10  Score=67.15  Aligned_cols=49  Identities=22%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+..+|||++.++     .+++|..|.+++||++.| |++||+|++|
T Consensus         2 ~~r~v~l~~~~~g~G~~~~~~-----~~~~V~~V~~~spA~~aG-l~~GD~I~~i   50 (83)
T 2kv8_A            2 RVRSVEVARGRAGYGFTLSGQ-----APCVLSCVMRGSPADFVG-LRAGDQILAV   50 (83)
T ss_dssp             CEEEEEECCCSSCCSCBCCCS-----SSCBCCBCCTTSTTTTTT-CCTTCEEEEE
T ss_pred             CcEEEEEEeCCCcccEEEEcC-----CCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            468899999999999998764     368999999999999988 9999999986

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.00  E-value=1.3e-09  Score=66.24  Aligned_cols=53  Identities=23%  Similarity=0.452  Sum_probs=44.8

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++++.+. ..+|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus        15 ~~~~v~~~~~~~~~lG~~l~~~~~~-~~gv~V~~V~~~s~A~~aG-L~~GD~Il~v   68 (114)
T 1x5n_A           15 KEKKVFISLVGSRGLGCSISSGPIQ-KPGIFISHVKPGSLSAEVG-LEIGDQIVEV   68 (114)
T ss_dssp             SSEEEEECCCSSCCCCEEEEECCSS-SCSEEEEEECTTSTTTTTT-CCTTCEEEEE
T ss_pred             CcEEEEEEEcCCCceeEEEeecCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            3466777554 78999999998764 4689999999999999988 9999999986

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=7.8e-10  Score=67.69  Aligned_cols=53  Identities=25%  Similarity=0.396  Sum_probs=47.2

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.+.|+|.+...+|||++.++.+   .+++|..|.|++||++.| |++||+|++|
T Consensus        17 l~~~~~v~l~~~~~~lG~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~Il~v   69 (117)
T 1uit_A           17 VEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-LEYGDQLLEF   69 (117)
T ss_dssp             SCCCEEEEEECSSCCCCEEEEECTT---SCEEEEEECTTSHHHHHT-CCTTCEECEE
T ss_pred             CCCCEEEEEEeCCCCccEEEEccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            3567789999988899999998864   589999999999999998 9999999986

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.98  E-value=1e-09  Score=72.08  Aligned_cols=54  Identities=28%  Similarity=0.398  Sum_probs=47.2

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.++|.|. ..+|||+|.++.+. ..+++|..|.+++||++.+.|++||+|++|
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~-~~~~~V~~v~~~spA~~aggl~~GD~I~~v   61 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDK-DGKPRVSNLRQGGIAARSDQLDVGDYIKAV   61 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTS-SSCSEEEEECTTSHHHHTTSCCTTCEEEEE
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCC-CCCeEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            3577888876 78999999999875 467899999999999998789999999986

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=67.51  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=46.5

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.++|.|+..||||++.++.+  ..+++|..|.+++||++.| |++||+|++|
T Consensus         9 ~~r~v~l~~~~~g~G~~l~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~i   60 (128)
T 2kjd_A            9 RPRLCTMKKGPSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEV   60 (128)
T ss_dssp             CCEEEEEECCSSSCCEEEEECSS--SCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CcEEEEEecCCCcccEEEEecCC--CCCEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            46789999998899999998775  3589999999999999988 9999999985

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.97  E-value=1.6e-09  Score=65.58  Aligned_cols=52  Identities=27%  Similarity=0.450  Sum_probs=45.6

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+|+|.|+ ..+|||++.+..+  ..+++|..|.+++||++.|-|++||+|++|
T Consensus         2 ~~~v~l~~~~~~glG~~~~~~~~--~~~~~V~~v~~~spA~~aGll~~GD~I~~i   54 (112)
T 1qau_A            2 VISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV   54 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSS--SSCEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             EEEEEEEcCCCCceeEEEEecCC--CCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence            567999888 6899999998764  468999999999999999866999999985

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=64.23  Aligned_cols=45  Identities=33%  Similarity=0.530  Sum_probs=38.7

Q ss_pred             EEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|.|.  ..++||++.+       ++||.+|.+++||++.|+|++||+|++|
T Consensus         3 ~v~l~~~~~~~~~G~~~~~-------gv~V~~V~~gspA~~aG~L~~GD~Il~i   49 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKI   49 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE-------EEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEeC-------CEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            4566654  4689999875       6999999999999999999999999986

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.95  E-value=5.3e-10  Score=66.44  Aligned_cols=51  Identities=20%  Similarity=0.283  Sum_probs=41.7

Q ss_pred             EEEEecCCCcccEEEecCCCCC------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLERSHTGLGISLAGHKDRT------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k~~~gLG~si~Gg~~~~------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++|.|+..++||++.++....      ..+++|..|.+++||++.| |++||+|++|
T Consensus         5 ~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   61 (99)
T 3khf_A            5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHI   61 (99)
T ss_dssp             CEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4778888899999999765421      1377999999999999988 9999999985

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.95  E-value=1.8e-09  Score=69.76  Aligned_cols=55  Identities=27%  Similarity=0.562  Sum_probs=46.9

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+++|.+...+|||++.++.+..    ..+++|..|.|++||++.|+|++||+|++|
T Consensus       100 ~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V  158 (196)
T 3gsl_A          100 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV  158 (196)
T ss_dssp             EEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             ccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            3456778788789999999887632    358999999999999999999999999986

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.94  E-value=1.3e-09  Score=63.90  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+++.. ..+|||++.++.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus         5 ~~v~~~~-~~~~G~~l~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   54 (91)
T 2pkt_A            5 QQIDLQG-PGPWGFRLVGGKDF-EQPLAISRVTPGSKAALAN-LCIGDVITAI   54 (91)
T ss_dssp             EEEEEES-SSCCSEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             EEEEECC-CCCCCEEEEccCCC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4566654 57999999998774 4689999999999999987 9999999985

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.92  E-value=1.7e-09  Score=64.95  Aligned_cols=51  Identities=25%  Similarity=0.318  Sum_probs=44.4

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.++|.|. ..++||.+.++.+  ..+++|..|.|++||++.| |++||+|++|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   53 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKD--TDGHLIRVIEEGSPAEKAG-LLDGDRVLRI   53 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTT--CCSCEEECCCTTSHHHHTT-CCTTCEEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeC--CCCEEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence            367889888 4799999998765  4679999999999999988 9999999986

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.88  E-value=2.8e-09  Score=69.55  Aligned_cols=43  Identities=30%  Similarity=0.542  Sum_probs=37.6

Q ss_pred             CCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.||||+|.||.+.       ...+++|..|.|++||++  .|++||+|++|
T Consensus         1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~--gl~~GD~I~~v   50 (195)
T 2qbw_A            1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQA   50 (195)
T ss_dssp             CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT--TCCTTCEEEEE
T ss_pred             CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh--CCCCCCEEEEE
Confidence            36899999999752       357999999999999999  59999999986

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.87  E-value=5.8e-09  Score=65.21  Aligned_cols=50  Identities=24%  Similarity=0.236  Sum_probs=41.9

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++++|+|.|+..||||+|.++.    .+.+|++|.+  + +.++.|++||+|++|
T Consensus        10 ~~~~~~V~L~Kg~~G~GFsI~~~~----~g~~V~~I~~--~-~~~aGL~~GD~Il~V   59 (113)
T 3soe_A           10 AGLLVTIPLIKGPKGFGFAIADSP----TGQKVKMILD--S-QWCQGLQKGDIIKEI   59 (113)
T ss_dssp             HCEEEEEEEECBTTBSSEEEEEET----TEEEEEEESC--G-GGSTTCCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCcccEEEeCCC----CCcEEEEecC--h-HHhCCCCCCCEEEEE
Confidence            468899999999999999997653    3578999998  3 456889999999986

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.86  E-value=1.1e-09  Score=67.90  Aligned_cols=56  Identities=27%  Similarity=0.488  Sum_probs=48.1

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.+.|+|.|+ ..+|||++.+..+  ..+++|..|.+++||++.|-|++||+|++|
T Consensus         5 ~~~~~~~v~l~~~~~~glG~~~~~~~~--~~~~~V~~V~~~spA~~aGll~~GD~I~~i   61 (127)
T 1b8q_A            5 IEPNVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV   61 (127)
T ss_dssp             CCCCSEEEEEECTTTSCCSCCEEECTT--SSCEEECCCSSSSSHHHHSSCCTTTCCCEE
T ss_pred             cCCceEEEEEEeCCCCcEeEEEEecCC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEE
Confidence            3456788999998 4899999998764  468999999999999999866999999975

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.82  E-value=4.6e-09  Score=78.65  Aligned_cols=49  Identities=31%  Similarity=0.655  Sum_probs=44.7

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|.|.|+ .+|||++.||.+   .+|||++|.+++||++.| |++||+|++|
T Consensus         2 ~r~V~l~k~-~~lG~~i~gg~~---~Gi~V~~V~~gspA~~aG-L~~GD~Il~V   50 (468)
T 3shw_A            2 MKLVKFRKG-DSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRV   50 (468)
T ss_dssp             EEEEEEECC-SSCCEEEEEETT---TEEEEEEECSSSHHHHTT-CCTTEEEEEE
T ss_pred             ceEEEEecC-CccceEEEccCc---CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            577999996 899999999975   689999999999999988 9999999986

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.82  E-value=5.9e-09  Score=62.56  Aligned_cols=52  Identities=23%  Similarity=0.483  Sum_probs=43.0

Q ss_pred             EEEEEecC-CCcccEEEecCCC------CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS-HTGLGISLAGHKD------RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~-~~gLG~si~Gg~~------~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.|.|. ..+|||+|.+...      ....+++|..|.+++||++.| |++||+|++|
T Consensus        17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~v   75 (104)
T 2z17_A           17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI   75 (104)
T ss_dssp             CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEE
T ss_pred             eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            45668887 6789999998432      124689999999999999988 9999999975

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.81  E-value=8.4e-09  Score=64.32  Aligned_cols=51  Identities=31%  Similarity=0.671  Sum_probs=42.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+.+.+.+ ..+|||++.++.+   .+++|..|.|++||++.| |++||+|++|
T Consensus        28 p~~~~~~~~~-~~~lG~~l~~~~~---~gv~V~~V~~gspA~~aG-L~~GD~Il~V   78 (124)
T 3tsv_A           28 PSMKLVKFRK-GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRV   78 (124)
T ss_dssp             CCCEEEEEEC-SSCCCEEEEECTT---SCEEEEEECTTCHHHHTT-CCTTEEEEEE
T ss_pred             CCeEEEEcCC-CCceeEEEecCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4455566655 4799999998765   689999999999999988 9999999986

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=1.7e-08  Score=62.58  Aligned_cols=54  Identities=28%  Similarity=0.581  Sum_probs=45.4

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++.+++++... ..+|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus        19 g~~~~v~v~~~~~~~lG~~~~~~~~~-~~gv~V~~V~~~spA~~aG-L~~GD~I~~v   73 (128)
T 1uf1_A           19 GDEKKVNLVLGDGRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEV   73 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTT-TCCCEEEEECTTCHHHHHT-CCTTCEEEEE
T ss_pred             CcEEEEEEEECCCCccCEEEECcccC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEE
Confidence            46677888765 47899999987653 4689999999999999987 9999999986

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=4.4e-09  Score=65.19  Aligned_cols=58  Identities=24%  Similarity=0.488  Sum_probs=46.9

Q ss_pred             CCCcEEEEEEecC--CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS--HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~--~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+...+++.|.  ..+|||++....+. ...+++|..|.+++||++.|+|++||+|++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~i   76 (124)
T 1wh1_A           16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI   76 (124)
T ss_dssp             SSCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEE
T ss_pred             CcceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            3446667777776  35899999977652 1368999999999999999989999999986

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.80  E-value=1.7e-09  Score=63.88  Aligned_cols=45  Identities=20%  Similarity=0.372  Sum_probs=39.6

Q ss_pred             cCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         30 RSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        30 k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++..+|||++.++.+. ..+++|..|.|++||++.| |++||+|++|
T Consensus        13 ~~~~~lG~~l~~g~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   57 (94)
T 1vb7_A           13 AGPAPWGFRISGGRDF-HTPIIVTKVTERGKAEAAD-LRPGDIIVAI   57 (94)
T ss_dssp             CSSSCCSBCCEEETTT-TEEEECCCBCTTSSHHHHT-CCTTCEEEEE
T ss_pred             cCCCCccEEEecccCC-CCCeEEEEECCCCHHHHCC-CCCCCEEEEE
Confidence            4578999999998874 5689999999999999976 9999999986

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.79  E-value=1.1e-08  Score=62.29  Aligned_cols=52  Identities=25%  Similarity=0.332  Sum_probs=45.2

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+++.|.+. ..+|||++.++.+  ..+++|..|.+++||++.| |++||+|++|
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~i   65 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKD--TDGHLIRVIEEGSPAEKAG-LLDGDRVLRI   65 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTT--CCSCEEECCCTTCTTGGGT-CCTTCEEEEE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecC--CCCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            4588889887 7899999987655  4689999999999999988 9999999985

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6.2e-10  Score=69.22  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=44.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCC-----------------------C----CCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKD-----------------------R----TKMAVFVCGLNPSGSASKTGSVLVGDELL   74 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~-----------------------~----~~~~I~V~~V~~gg~A~~dG~L~~GD~il   74 (76)
                      ..++|+|.|+..||||+|.+.+.                       .    ...+++|..|.+++||++.| |++||+|+
T Consensus         8 ~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~   86 (126)
T 2yuy_A            8 GPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRII   86 (126)
T ss_dssp             SCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCCC
T ss_pred             CCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEEE
Confidence            45679999998999999986321                       0    13569999999999999998 99999999


Q ss_pred             EC
Q psy18106         75 EI   76 (76)
Q Consensus        75 eV   76 (76)
                      +|
T Consensus        87 ~i   88 (126)
T 2yuy_A           87 KV   88 (126)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.78  E-value=1.3e-08  Score=78.66  Aligned_cols=54  Identities=26%  Similarity=0.528  Sum_probs=48.6

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.|+|.|...+|||++.++.+  ..+++|+.|.++++|++.|+|++||+|++|
T Consensus       306 ~~~~~v~l~~~~~~lG~~i~~~~~--~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V  359 (721)
T 2xkx_A          306 REPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV  359 (721)
T ss_pred             cceEEEEEEECCCCccEEEeccCC--CCCeEEEEeCCCChHHhcCCCccCCEEEEE
Confidence            357889999988899999998865  468999999999999999999999999986

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.77  E-value=8.4e-09  Score=75.22  Aligned_cols=51  Identities=31%  Similarity=0.683  Sum_probs=45.0

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+.|.+.|+ .+|||++.||.+   .+++|.+|.+++||++.| |++||+|++|
T Consensus         8 ~~~~~v~~~k~-~~lG~~i~gg~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~V   58 (391)
T 3tsz_A            8 PSMKLVKFRKG-DSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRV   58 (391)
T ss_dssp             -CEEEEEEECC-SSCCEEEEEETT---TEEEEEEECTTCHHHHTT-CCTTEEEEEE
T ss_pred             CCcEEEEeecC-CceeEEEEecCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            46788888886 479999999875   789999999999999999 9999999986

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=62.73  Aligned_cols=49  Identities=31%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|.|.|+..+|||++.+.     .+++|..|.|++||++.| |++||+|++|
T Consensus        23 ~~r~v~l~k~~~~~G~~l~~~-----~~v~V~~V~~gspA~~AG-L~~GD~Il~V   71 (109)
T 2vsv_A           23 MPRSIRFTAEEGDLGFTLRGN-----APVQVHFLDPYCSASVAG-AREGDYIVSI   71 (109)
T ss_dssp             SCEEEEECCGGGCCCEEEESS-----SSCEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CCEEEEEEeCCCceeEEEeCC-----CCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            357899999989999999754     458999999999999977 9999999986

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.73  E-value=3.8e-08  Score=58.34  Aligned_cols=37  Identities=35%  Similarity=0.614  Sum_probs=33.1

Q ss_pred             CCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         31 SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        31 ~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+|||++.+|        +|.+|.+++||++.| |++||+|++|
T Consensus        22 ~~~~lG~~~~~G--------~V~~V~~~spA~~aG-L~~GD~Il~I   58 (90)
T 1y7n_A           22 LRYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEI   58 (90)
T ss_dssp             TTSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSCEEEEE
T ss_pred             CccccCeEecCC--------EEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            367999999754        899999999999988 9999999986

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.71  E-value=7.9e-09  Score=70.33  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=46.3

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.|+|.|+..||||++.++.+  ..+++|..|.++++|++.| |++||+|++|
T Consensus         9 ~~r~v~l~k~~~glG~~l~~~~~--~~gv~V~~V~~gSpA~~aG-L~~GD~Il~V   60 (216)
T 2krg_A            9 RPRLCTMKKGPSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEV   60 (216)
T ss_dssp             CCEEEEEECCSSSSCEEECCCSS--SCSCBEEEECTTSHHHHHT-CCTTCBCCEE
T ss_pred             ceEEEEEEeCCCCceEEEEecCC--CCCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            45788999998899999998765  3589999999999999988 9999999986

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.70  E-value=4.2e-09  Score=76.41  Aligned_cols=57  Identities=19%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+.+.|+|.|. ..+|||+|.+... ....+++|..|.|++||++.|+|++||+|++|
T Consensus       202 ~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~V  260 (388)
T 3suz_A          202 SENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI  260 (388)
T ss_dssp             SSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEE
T ss_pred             cccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEE
Confidence            456788999997 6899999998543 23456999999999999999999999999986

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.69  E-value=2e-08  Score=65.80  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=42.1

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|.+. ..+|||++.++    ..++||..|.++++|++.|+|++||+|++|
T Consensus       114 ~~~v~l~~~~~~~lG~~~~~~----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V  164 (206)
T 3r0h_A          114 KFNVDLMKKAGKELGLSLSPN----EIGCTIADLIQGQYPEIDSKLQRGDIITKF  164 (206)
T ss_dssp             EEEEEEECCTTCCCCEEEEEC----SSCEEEEEECTTSCHHHHHHCCTTCEEEEE
T ss_pred             EEEEEEecCCCCccCeEEEcC----CceEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            456667666 46899999854    357999999999999999999999999986

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.68  E-value=5.7e-09  Score=62.42  Aligned_cols=49  Identities=22%  Similarity=0.470  Sum_probs=42.7

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +...++|.+...+|||++.+.     .+++|..|.|++||++.| |++||+|++|
T Consensus        15 ~~~~v~l~~~~~g~G~~~~~~-----~~~~V~~V~~~spA~~aG-L~~GD~I~~v   63 (100)
T 1whd_A           15 EKLQITIRRGKDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQL   63 (100)
T ss_dssp             EEEEEEEECCSSSSSCBCCCS-----SSCBCCBCCTTSHHHHHT-CCSSCEEEEE
T ss_pred             ceEEEEEECCCCeeeEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            456788888888999998764     468999999999999987 9999999986

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.67  E-value=4.8e-09  Score=62.95  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++..++.+. +..+|||++.++.+. ..+++|..|.+++||++.| |++||+|++|
T Consensus         4 g~~~~v~~~-~~~~lG~~l~~g~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~i   56 (103)
T 1v5l_A            4 GSSGNVVLP-GPAPWGFRLSGGIDF-NQPLVITRITPGSKAAAAN-LCPGDVILAI   56 (103)
T ss_dssp             CCCBCCEEE-SSSCCSBCCEEETTT-TEEEECSCBCTTSTTGGGT-CCTTCBEEEE
T ss_pred             CCEEEEEEc-CCCCcCEEEeccccC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            344556664 457999999999874 4689999999999999976 9999999986

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.66  E-value=8.7e-08  Score=57.05  Aligned_cols=52  Identities=21%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.++++|.|+..||||+|.+..    .+++|..|.++  |++ ..|++||+|++|
T Consensus         6 ~~~~~~~~v~l~~~~~g~G~~i~~~~----~Gv~V~~v~~~--a~~-aGL~~GD~I~~v   57 (96)
T 1ujv_A            6 SGQAELMTLTIVKGAQGFGFTIADSP----TGQRVKQILDI--QGC-PGLCEGDLIVEI   57 (96)
T ss_dssp             CCCCCCEEEEEECCSSSSSEEEEEET----TEEEEEEESCG--GGS-TTCCSSCEEEEE
T ss_pred             CCCceEEEEEEEeCCCceeEEEEcCC----CCEEEEEEecc--ccc-CCCCCCCEEEEE
Confidence            44567889999999999999997432    37999999993  444 679999999986

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=8.4e-09  Score=61.36  Aligned_cols=49  Identities=20%  Similarity=0.458  Sum_probs=41.6

Q ss_pred             CcEEEEEEecCC--CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSH--TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~--~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|+|.|..  .+|||++.+     ..+++|..|.+++||+  ..|++||+|++|
T Consensus         7 ~~~~~v~l~~~~~~~~~G~~l~~-----~~~~~V~~V~~~spA~--agL~~GD~Il~i   57 (96)
T 2edv_A            7 GVRHTVKIDKDTLLQDYGFHISE-----SLPLTVVAVTAGGSAH--GKLFPGDQILQM   57 (96)
T ss_dssp             CEEEEEEECCCSSSCSCSBCCCS-----SSSCBCCCBCSSSSST--TTSCTTCBEEEE
T ss_pred             CccEEEEEEECCCCCcccEEEec-----CCCeEEEEECCCCchh--hCCCCCCEEEEE
Confidence            346789999884  589999987     3578999999999994  789999999986

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.65  E-value=4.8e-08  Score=62.70  Aligned_cols=50  Identities=28%  Similarity=0.407  Sum_probs=44.0

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|. ..+|||++...    ..+++|..|.|++||++.| |++||+|++|
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~----~~g~~V~~v~~~spA~~aG-l~~GD~I~~i   54 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSI----DNGIFVQLVQANSPASLVG-LRFGDQVLQI   54 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEE----TTEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeC----CCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            5688999997 57999999864    3689999999999999987 9999999985

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.65  E-value=6.4e-08  Score=56.29  Aligned_cols=47  Identities=32%  Similarity=0.487  Sum_probs=39.2

Q ss_pred             EEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...|++.+.  ...|||.+.       .+++|..|.++++|++.|+|++||+|++|
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~-------~gv~V~~v~~~s~A~~aG~l~~GD~I~~i   51 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA-------SHIFVKEISQDSLAARDGNIQEGDVVLKI   51 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE-------EEEEEEEECTTCHHHHSCCCCTTCEEEEE
T ss_pred             cEEEEEEeCCCCCCCCEEEe-------CCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            355666655  468999876       57999999999999999889999999985

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.65  E-value=5.3e-08  Score=63.84  Aligned_cols=54  Identities=28%  Similarity=0.512  Sum_probs=45.2

Q ss_pred             EEEEEEecCCCcccEEEecCCCCC---CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~---~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|.+...+|||++.++.+..   ..+++|..|.++++|++.|+|++||+|++|
T Consensus       107 ~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~i  163 (200)
T 2qt5_A          107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV  163 (200)
T ss_dssp             EEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            345666677789999999886521   468999999999999999999999999986

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.53  E-value=2e-07  Score=52.64  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=36.6

Q ss_pred             EEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         26 VTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        26 v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+. ...|||.+.       .+++|..|.+++||++.|+|++||+|++|
T Consensus         5 ~~~~~~~~~~~g~~~~-------~gv~V~~v~~~s~A~~aG~l~~GD~I~~i   49 (81)
T 2rcz_A            5 TLVKSRKNEEYGLRLA-------SHIFVKEISQDSLAARDGNIQEGDVVLKI   49 (81)
T ss_dssp             EEECCSTTCCCCEEEE-------EEEEEEEECTTSHHHHHSSCCTTCEEEEE
T ss_pred             EEEECCCCCCCCEEEe-------CCEEEEEECCCChHHHCCCCCCCCEEEEE
Confidence            344444 678999876       46999999999999999889999999985

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.45  E-value=2.9e-08  Score=60.95  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=41.0

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++|+|.|+..+|||++.+.     .+++|..|.+++||++.| |++||+|++|
T Consensus        17 r~v~l~~~~~~~G~~l~~~-----~~v~V~~V~~~spA~~aG-L~~GD~Il~I   63 (111)
T 1vae_A           17 RGIHFTVEEGDLGFTLRGN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSI   63 (111)
T ss_dssp             CCCCEECCSSCCSCCEESS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEE
T ss_pred             eEEEEEcCCCcccEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            5688889889999999754     468999999999999976 9999999986

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.43  E-value=5.8e-07  Score=52.13  Aligned_cols=48  Identities=17%  Similarity=0.386  Sum_probs=37.9

Q ss_pred             EEEEEecC---CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS---HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~---~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+.+.+.   ..+|||++...    ..+++|..|.|++||++.| |++||+|++|
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   55 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWD----IPGIFVASVEAGSPAEFSQ-LQVDDEIIAI   55 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEE----TTEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             eEEEEEecCCCCCcccEEEEec----CCCEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            34555554   23799998732    3589999999999999987 9999999985

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.39  E-value=6.3e-07  Score=58.69  Aligned_cols=54  Identities=26%  Similarity=0.466  Sum_probs=43.2

Q ss_pred             EEEEEEecC-CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|.+. ..+|||++....+. ...+++|..|.+++||++.|+|++||+|++|
T Consensus       108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~v  163 (196)
T 1p1d_A          108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI  163 (196)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEE
T ss_pred             cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEE
Confidence            345666643 56899999886542 2468999999999999999999999999985

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.23  E-value=1.8e-06  Score=53.15  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+-|.+...++||.+...    ..+.+|..|.+++||++.| |++||+|++|
T Consensus        18 ~~~l~l~~~~~g~G~~l~~~----~~~~~I~~V~~gSpA~~AG-L~~GD~I~~I   66 (101)
T 3qik_A           18 AKRLLILPQEEDYGFDIEEK----NKAVVVKSVQRGSLAEVAG-LQVGRKIYSI   66 (101)
T ss_dssp             EEEEEECCCSSSSSEEEEEE----TTEEEEEEECTTSHHHHHT-CCTTCBEEEE
T ss_pred             cCeEEEEeCCCcccEEEEcc----CCCeEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            35677777788999999853    3568999999999999976 9999999986

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.98  E-value=1.6e-05  Score=49.00  Aligned_cols=57  Identities=19%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEecC-CCcccEEEe--cCCCCCCCcEEEEEeCC--CChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLA--GHKDRTKMAVFVCGLNP--SGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~--Gg~~~~~~~I~V~~V~~--gg~A~~dG~L~~GD~ileV   76 (76)
                      ++..++.+++.+. .+.+||++.  ........+++|..|.+  ++||++.| |++||+|++|
T Consensus        12 ~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~V   73 (118)
T 2yub_A           12 LPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEI   73 (118)
T ss_dssp             SCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEE
T ss_pred             CCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEE
Confidence            3344555555544 334555554  22112246899999999  99999976 9999999986

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.73  E-value=5.5e-05  Score=48.23  Aligned_cols=46  Identities=17%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++++|.+. ...|||++..       + +|..|.++++|++.| |++||.|++|
T Consensus        88 ~~~~v~l~~~~~~~lG~~~~~-------g-~v~~v~~~s~a~~aG-l~~GD~I~~i  134 (166)
T 1w9e_A           88 FERTITMHKDSTGHVGFIFKN-------G-KITSIVKDSSAARNG-LLTEHNICEI  134 (166)
T ss_dssp             TCEEEEEECCTTSCCSEEEET-------T-EEEEECTTSHHHHTT-CCSSEEEEEE
T ss_pred             CcEEEEEecCCCCcEeEEEeC-------C-EEEEEccCCHHHHcC-CCCCCEEEEE
Confidence            4456666644 4678888871       2 899999999999987 9999999985

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.62  E-value=9.3e-06  Score=58.82  Aligned_cols=36  Identities=36%  Similarity=0.650  Sum_probs=0.0

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+|||++.++        +|..|.++++|++.| |++||+|++|
T Consensus       307 ~~~lG~~i~~g--------~I~~V~~gs~A~~aG-L~~GD~Il~V  342 (388)
T 3suz_A          307 KYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEI  342 (388)
T ss_dssp             ---------------------------------------------
T ss_pred             CCccceEEecC--------EEEEeecCCHHHHcC-CCCCCEEEEE
Confidence            45788887654        899999999999998 9999999986

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.50  E-value=4.6e-05  Score=50.61  Aligned_cols=41  Identities=15%  Similarity=0.110  Sum_probs=29.5

Q ss_pred             cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCC-CEEEEC
Q psy18106         34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVG-DELLEI   76 (76)
Q Consensus        34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~G-D~ileV   76 (76)
                      |++++..-+... ..+++|..|.|++||++.| |++| |+|++|
T Consensus         3 g~~~~~~~~~~~-~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~i   44 (209)
T 3rle_A            3 GSSQSVEIPGGG-TEGYHVLRVQENSPGHRAG-LEPFFDFIVSI   44 (209)
T ss_dssp             -----CCCTTSS-SEEEEEEEECTTSHHHHTT-CCTTTEEEEEE
T ss_pred             chhhhhhccCCC-CCEEEEEEECCCCHHHHCC-CCcCCeEEEEE
Confidence            455555544442 4689999999999999977 9999 999975

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.48  E-value=1.6e-05  Score=46.91  Aligned_cols=26  Identities=15%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             cEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         49 AVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        49 ~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++|..|.|++||++ | |++||.|++|
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~I   27 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISA   27 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEE
Confidence            578899999999999 6 9999999985

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.48  E-value=4.8e-05  Score=44.85  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||++ | |++||.|++|
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~I   31 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAI   31 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEE
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEE
Confidence            35799999999999998 6 9999999985

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.34  E-value=0.00022  Score=52.25  Aligned_cols=44  Identities=16%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             CCcccEEEecCCCCC-CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~-~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|+++....+.+ ...++|..|.|++||++.| |++||+|++|
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~I  117 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMM  117 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            468888887554421 2358999999999999987 9999999986

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.32  E-value=0.00014  Score=43.54  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||++.| |++||.|++|
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~i   62 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAI   62 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            4689999999999999977 9999999985

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.29  E-value=0.00027  Score=41.83  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=25.1

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||+.  .|++||.|++|
T Consensus         6 ~~Gv~V~~V~~~spA~~--GL~~GD~I~~I   33 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD--VLHAGDLITEI   33 (100)
T ss_dssp             CCCEEEEEECTTSGGGG--TCCTTCEEEEE
T ss_pred             CCCEEEEEeCCCCchHH--CCCCCCEEEEE
Confidence            46899999999999995  59999999985

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.21  E-value=0.00024  Score=42.52  Aligned_cols=29  Identities=17%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||++.| |++||.|++|
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~i   62 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKV   62 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEE
Confidence            4689999999999999976 9999999985

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.16  E-value=0.0007  Score=44.82  Aligned_cols=43  Identities=16%  Similarity=0.134  Sum_probs=33.5

Q ss_pred             CcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCC-CCEEEEC
Q psy18106         33 TGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLV-GDELLEI   76 (76)
Q Consensus        33 ~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~-GD~ileV   76 (76)
                      ..||+++.--...  ...+++|..|.+++||++.| |++ ||.|++|
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~i  140 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGA  140 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEE
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEEC
Confidence            3678887643221  12689999999999999987 999 9999975

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.10  E-value=0.00057  Score=49.07  Aligned_cols=43  Identities=28%  Similarity=0.463  Sum_probs=34.7

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|+.+..-. ....+++|..|.+++||++.| |++||+|++|
T Consensus        84 ~~giG~~~~~~~-~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~I  126 (388)
T 1fc6_A           84 VTGVGLEITYDG-GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTV  126 (388)
T ss_dssp             CBBCSEEEEECT-TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             eEEEEEEEEEee-cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence            358999887431 113679999999999999987 9999999986

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.00  E-value=0.00067  Score=42.23  Aligned_cols=28  Identities=14%  Similarity=0.105  Sum_probs=24.9

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||+ .| |++||.|++|
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~i   83 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKV   83 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEE
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEE
Confidence            4689999999999999 55 9999999985

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.94  E-value=0.0012  Score=45.98  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .||+.+.--  ....+++|..|.+++||++.| |++||.|++|
T Consensus       230 ~lGi~~~~~--~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~i  269 (324)
T 1y8t_A          230 SLGVQVTND--KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKV  269 (324)
T ss_dssp             ECCEEEESC--SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEE
T ss_pred             ccceEeeec--cCCCceEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            566665421  124679999999999999976 9999999985

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=96.91  E-value=0.00045  Score=40.69  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             EEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         51 FVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        51 ~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +|..|.+++||++.| |++||+|++|
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~i   29 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAV   29 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEE
Confidence            688999999999966 9999999975

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=96.90  E-value=0.001  Score=41.27  Aligned_cols=28  Identities=25%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.+++||++.  |++||+|++|
T Consensus        24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~I   51 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV--LTPGLVIESI   51 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT--SCTTCEEEEE
T ss_pred             CCceEEEEECCCChHHHh--cCCCCEEEEE
Confidence            468999999999999996  9999999985

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=96.84  E-value=0.00024  Score=40.82  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         49 AVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        49 ~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++|..|.+++||++.| |++||+|++|
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~i   31 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXV   31 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEE
Confidence            46788999999999976 9999999985

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.70  E-value=0.0042  Score=45.32  Aligned_cols=28  Identities=11%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||+|++|
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~v  390 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGV  390 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence            489999999999999987 9999999986

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.66  E-value=0.0014  Score=50.09  Aligned_cols=39  Identities=21%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         33 TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        33 ~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+||+.+...    ..+++|..|.+++||++.| |++||+|++|
T Consensus       485 ~~lG~~~~~~----~~gv~V~~V~~~spA~~AG-L~~GD~I~aI  523 (597)
T 4fgm_A          485 VNFGAKYKAS----PQGLDVLNVYHDESAYHAG-LSAGDKIIAI  523 (597)
T ss_dssp             CCCSEEEEEE----TTEEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             cccceEEecc----CCeEEEEEeCCCChHHHCC-CCCCCEEEEE
Confidence            4788887643    2479999999999999976 9999999986

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=96.51  E-value=0.0018  Score=45.19  Aligned_cols=29  Identities=24%  Similarity=0.539  Sum_probs=26.1

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++.| |++||.|++|
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~i  271 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISV  271 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEE
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEE
Confidence            3689999999999999976 9999999985

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.48  E-value=0.0019  Score=47.21  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=26.1

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||+|++|
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~v  290 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSL  290 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEE
Confidence            589999999999999987 9999999986

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=96.45  E-value=0.00097  Score=38.36  Aligned_cols=28  Identities=14%  Similarity=0.069  Sum_probs=24.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.|..+.|+++|++.| |++||.|++|
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~i   46 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVAL   46 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEE
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEE
Confidence            467788889988999976 9999999985

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.39  E-value=0.0017  Score=46.18  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.7

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~i  290 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSL  290 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEE
Confidence            588999999999999976 9999999975

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.35  E-value=0.0022  Score=44.95  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~i  283 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAI  283 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEE
Confidence            589999999999999976 9999999985

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.24  E-value=0.0024  Score=46.99  Aligned_cols=28  Identities=29%  Similarity=0.504  Sum_probs=26.2

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.|++||++.| |++||+|++|
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~v  309 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQI  309 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEE
Confidence            689999999999999988 9999999985

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.20  E-value=0.0025  Score=46.88  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=26.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~V  413 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISA  413 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            478999999999999988 9999999986

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=95.76  E-value=0.0075  Score=42.62  Aligned_cols=28  Identities=36%  Similarity=0.560  Sum_probs=25.3

Q ss_pred             CcEEEEEeCCCChhcccCCCCC-----------CCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLV-----------GDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~-----------GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++           ||.|++|
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~i  289 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSV  289 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEE
Confidence            589999999999999977 888           9999875

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=95.66  E-value=0.0049  Score=36.55  Aligned_cols=27  Identities=15%  Similarity=0.037  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         49 AVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        49 ~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++|..+.|+++|++.| |++||.|++|
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~i   64 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVAL   64 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEE
Confidence            56677888888889876 9999999985

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=95.59  E-value=0.0021  Score=45.11  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~i  281 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISI  281 (332)
T ss_dssp             -----------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEE
Confidence            579999999999999976 9999999976

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=95.26  E-value=0.0057  Score=44.92  Aligned_cols=28  Identities=32%  Similarity=0.563  Sum_probs=25.4

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++.| |++||.|++|
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~i  313 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSL  313 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBS
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEE
Confidence            489999999999999965 9999999976

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=94.46  E-value=0.041  Score=42.89  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=32.7

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCC--------ChhcccC-CCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPS--------GSASKTG-SVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~g--------g~A~~dG-~L~~GD~ileV   76 (76)
                      ..|+|+.+.-  +  +..++|..|.++        +||++.| .|+ ||+|++|
T Consensus       736 ~~g~G~~~~~--~--~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i  784 (1045)
T 1k32_A          736 SGRIACDFKL--D--GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDI  784 (1045)
T ss_dssp             CCBCSEEEEE--E--TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEE
T ss_pred             cceecEEEEE--e--CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEE
Confidence            4588988763  1  357999999998        9999988 499 9999986

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=94.43  E-value=0.031  Score=42.43  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=25.0

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++ + |++||.|++|
T Consensus       276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~i  303 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSF  303 (539)
T ss_dssp             SBCEEEEEECTTSGGGG-T-CCTTCEEEEE
T ss_pred             cCceeeecccCCChHHh-C-ccCCCEEEEE
Confidence            35899999999999987 5 9999999975

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=94.08  E-value=0.0091  Score=43.87  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=0.0

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.++++|++.| |++||.|++|
T Consensus       382 ~~gv~V~~V~~gspA~~aG-L~~GDiI~~v  410 (448)
T 1ky9_A          382 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGA  410 (448)
T ss_dssp             ------------------------------
T ss_pred             CCeEEEEEecCCCHHHHcC-CCCCCEEEEE
Confidence            3578999999999999977 9999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-10
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	9e-09
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-08
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	2e-08
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	2e-08
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-08
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	8e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-07
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	3e-07
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-07
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-07
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	6e-07
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-06
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-06
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	4e-06
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	5e-06
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	6e-06
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	8e-06
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	8e-06
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-06
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-05
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	1e-05
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-05
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-05
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-05
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-05
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-05
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	6e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	6e-05
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	7e-05
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	8e-05
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	9e-05
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	1e-04
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-04
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-04
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-04
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	4e-04
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-04
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	5e-04
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	7e-04
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-04
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	0.002

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 7e-10
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G    +V +++S   LGI++ G  +  +    +  +   GSA   G + VG  +LE+
Sbjct: 1  GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 9e-09
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
          SS    +    L    +  TL++S+ G G ++ G  +     + V  + P G A++ G +
Sbjct: 5  SSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKM 63

Query: 68 LVGDELLEI 76
            GD ++ I
Sbjct: 64 ETGDVIVYI 72

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 1e-08
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P    +TLER   GLG S+ G        + ++V  +   G+AS+ G +  GD+++ +
Sbjct: 1  PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 58

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 2e-08
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMA-VFVCGLNPSGSASKTGSVLVGDELLEI 76
          P   V+T+ +  TGLG+ + G  +R +   V++  + P G   K G +  GD+L+ I
Sbjct: 7  PAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 62

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (106), Expect = 2e-08
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          G  +  V L+R    LGI+++G ++     + +  L   G A +TG++ +GD +L I
Sbjct: 1  GAIIYTVELKRYGGPLGITISGTEEPF-DPIIISSLTKGGLAERTGAIHIGDRILAI 56

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 3e-08
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +L  V LE+   GLGIS+ G          K+ +FV  +   G+A + G + V D+++E+
Sbjct: 2  ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 61

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (102), Expect = 8e-08
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +    V +   +    L ++L G  D     V V  +   G+A + G V+ GDE++ I
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 1e-07
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GS G   + V L R  +G G  + G  +     + +  +   GSA + G +  GDEL+ +
Sbjct: 4  GSSGYKELDVHLRRMESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYV 62

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 1e-07
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +  LE+   G G  L G K   K+  ++  + P   A K G +L GD L+E+
Sbjct: 6  LCCLEKGPNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 22 DLVVVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           + V  L +    GLG SLAG  D     + V  + P+G AS+ G++  G+E+L I
Sbjct: 8  GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 63

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 4e-07
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          P+++ VTL++ + G+G+S+   K   + K+ ++V  +   G+A   G +  GD+LL +
Sbjct: 3  PEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 59

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 4e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          D   V +E+   G G S+ G ++  KM ++V  L   G A + G + VGD+++EI
Sbjct: 11 DYFTVDMEKGAKGFGFSIRGGRE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (95), Expect = 6e-07
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 26 VTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +TLER ++GLG S+AG  D        ++F+  + P G+A++ G + V D +L +
Sbjct: 5  ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 59

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 23 LVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          ++ V L +   GLG S+AG           ++++  +   G+A K G + +GD LL +
Sbjct: 2  IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 59

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (92), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           + + R  TGLG ++ G +D     +F+  +   G A  +G +  GD++L +
Sbjct: 12 RIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV 61

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 4e-06
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 26 VTLER-SHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V L     +G G+ L G    T+       VC + P   A + G + VGD +L I
Sbjct: 12 VVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSI 66

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 5e-06
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          S    ++   L   + GLG+ +  +       + +  L   G+A+  G +  GD L+ +
Sbjct: 23 SSLNKVIQTKLTVGNLGLGLVVIQNGP----YLQISHLINKGAAASDGILQPGDVLISV 77

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 6e-06
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLER--SHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKT 64
          SS  + ++      +L  V L R  S   LG+++    D    + +++  ++P+  A+K 
Sbjct: 5  SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 65 GSVLVGDELLEI 76
          G +  GD +++I
Sbjct: 65 GRIREGDRIIQI 76

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (88), Expect = 8e-06
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 26 VTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          VT+ ++   GLGIS+ G ++  KM + +  +    +A +T ++ VGD +L +
Sbjct: 8  VTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSV 58

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 8e-06
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 25 VVTLERS-HTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
           V L R     LGIS+ G +              +F+  +     A K G++  GD ++E
Sbjct: 4  RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 63

Query: 76 I 76
          +
Sbjct: 64 V 64

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 9e-06
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
          S D V    G L     +V + ++  + LGISL     R K  + +  + P+    ++G+
Sbjct: 6  SGDTVANASGPL-----MVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGA 60

Query: 67 VLVGDELLEI 76
          +  GD +L I
Sbjct: 61 LHPGDHILSI 70

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-05
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 20 GPDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
             +  V LER  +GLG+ L            +++  L P   A+  G + +GD +LE+
Sbjct: 6  SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTK--MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
            +  VTLE+   GLG SL G K        + +  +    ++ ++ +V  GDE+L++
Sbjct: 28 ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL 85

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.2 bits (86), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 20 GPDLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDEL 73
          G  + +VTL+++     GI +   + +         +F+ G+ P   A   G + VGD +
Sbjct: 1  GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRI 60

Query: 74 LEI 76
          L +
Sbjct: 61 LSL 63

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 24 VVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
               + S   LG+ + G K     ++  F+  +     A   G +  GDE+LE 
Sbjct: 21 RTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEW 75

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 23 LVVVTLER-SHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          ++ VTL    +  LGIS+ G  + R    +++  +   G+ +  G +  GD LL++
Sbjct: 2  IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 57

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLE 75
           + + +T+ R   GLGIS+AG K  T        +F+  ++  G A++   V VGD+LLE
Sbjct: 7  EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLE 65

Query: 76 I 76
          +
Sbjct: 66 V 66

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 3e-05
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 25 VVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V  L RS  GLG S+AG K  T        +FV  +   G+A + G++ VGD +L I
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 6e-05
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 8  SSDKVKKKYGSLGPDLV-VVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTG 65
          + ++V +  G  G + V +V +E++    LG ++    D     V +  +   G+A K+G
Sbjct: 3  TDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDS----VIISRIVKGGAAEKSG 58

Query: 66 SVLVGDELLEI 76
           +  GDE+LEI
Sbjct: 59 LLHEGDEVLEI 69

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 6e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDEL 73
           D   V L ++   LGIS+    D+           ++V  + P G+A   G +  GD +
Sbjct: 3  GDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRV 62

Query: 74 LEI 76
          L +
Sbjct: 63 LAV 65

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 7e-05
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +T+ R   G G ++          V V  ++  G A + G +   D +L++
Sbjct: 1  ITIPRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQL 45

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (81), Expect = 8e-05
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 26 VTLER-SHTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V L +     LGI+++    R     + +  +     A +TG++ +GD+LL I
Sbjct: 14 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 66

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 9e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 22 DLVVVTLER-SHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
          +   VTL++ S  G GI+++G     H +  + ++ +  + P G A   G +   D ++ 
Sbjct: 7  EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVM 64

Query: 76 I 76
          +
Sbjct: 65 V 65

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (80), Expect = 9e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 21 PDLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           +L  VTL +       G S+A      +  V+V  + P+G     G +   D LL++
Sbjct: 5  VELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDL-GGLKPYDRLLQV 59

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 25 VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +V  +++    +GI+L  ++        V  +   G   + G++ VGDE+ EI
Sbjct: 4  LVQFQKNTDEPMGITLKMNELN---HCIVARIMHGGMIHRQGTLHVGDEIREI 53

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21 PDLVVVTLERSHTGLGISLAGHKDRT-------KMAVFVCGLNPSGSASKTGSVLVGDEL 73
             + + L R    LG ++ G +             +FV  +  SG A+K G + + D +
Sbjct: 7  GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 74 LEI 76
          +E+
Sbjct: 67 IEV 69

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 26 VTLERSH-TGLGISLAGHKDRTKM-AVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V +E+     LG+ +      + +  V +  +   G A K+G + +GD+++ I
Sbjct: 2  VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI 54

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 8  SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
          SS   ++K      +   V +++    LGIS+   +      ++V  +     A + G +
Sbjct: 5  SSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-L 60

Query: 68 LVGDELLEI 76
            GD+LLE 
Sbjct: 61 EYGDQLLEF 69

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 26 VTLER-SHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          V L     TG GI L G    T+       +  +     A + G + +GD ++ I
Sbjct: 19 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 73

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.9 bits (77), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 22 DLVVVTL-ERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +++ V L +R   GLG  +       K  V +  L   G+A ++G +  GD +L +
Sbjct: 1  NVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV 54

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 34 GLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          GLGI + G K+      ++  ++  + P GSA +TG ++ G ++LE 
Sbjct: 31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (76), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 25 VVTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          +   +    GLG+SL G+K R     + +F+  +   G+A K G + + D+L+ +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 9/69 (13%)

Query: 17 GSLGPDLVVVTLERSHT-GLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSV 67
          GS GP L  + ++++    LGIS+ G         +D T   +F+  ++P+G+A + G +
Sbjct: 4  GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63

Query: 68 LVGDELLEI 76
           VG  LLE+
Sbjct: 64 RVGLRLLEV 72

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 8e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
          LV +   ++H GLG S+ G  +   + ++V  + P   A K G + VGD++L +
Sbjct: 11 LVSLRRAKAHEGLGFSIRGGSE-HGVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.5 bits (71), Expect = 0.002
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
           S   +L+ +T+ +   G G ++A      ++                  +  GD ++EI
Sbjct: 5  SSGQAELMTLTIVKGAQGFGFTIADSPTGQRVK-------QILDIQGCPGLCEGDLIVEI 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.66
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.65
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.65
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.65
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.64
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.63
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.63
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.6
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.59
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.59
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.58
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.57
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.56
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.56
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.56
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.55
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.54
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.54
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.53
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.53
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.52
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.52
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.52
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.52
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.51
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.5
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.5
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.49
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.47
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.47
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.47
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.46
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.45
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.43
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.41
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.41
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.4
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.38
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.34
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.34
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.32
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.31
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.29
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.26
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.26
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.24
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.22
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.12
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.11
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.06
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.9
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.72
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.49
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.59
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.55
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.54
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.46
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.4
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	96.66
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	95.66

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.5e-17  Score=96.28  Aligned_cols=55  Identities=35%  Similarity=0.655  Sum_probs=50.2

Q ss_pred             cEEEEEEecCCCcccEEEecCCCC----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |+++|+|.|+..||||+|.||.+.    ...+|||++|.|+|||+++|+|++||+|++|
T Consensus         1 E~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~V   59 (93)
T d1rgra_           1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV   59 (93)
T ss_dssp             CEEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CCEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEE
Confidence            578999999988999999999874    2569999999999999999999999999986

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.65  E-value=6.1e-17  Score=96.42  Aligned_cols=54  Identities=26%  Similarity=0.498  Sum_probs=48.9

Q ss_pred             EEEEEEecC-CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+|+|.|+ .++|||+|.||.+. .+.+|||++|.|+|||+++|+|++||+|++|
T Consensus         2 i~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~V   57 (92)
T d2f0aa1           2 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV   57 (92)
T ss_dssp             EEEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEE
Confidence            578999998 68999999999874 3579999999999999999999999999986

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=99.32  Aligned_cols=56  Identities=29%  Similarity=0.480  Sum_probs=50.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++++|+|.|...||||+|.||.+.  .+.+|||++|.|+|+|+++|+|++||+||+|
T Consensus        28 ~~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V   85 (130)
T d1i16a_          28 ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL   85 (130)
T ss_dssp             EEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEEC
T ss_pred             CeEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeE
Confidence            3578899999988999999999874  3568999999999999999999999999997

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=94.59  Aligned_cols=54  Identities=30%  Similarity=0.580  Sum_probs=49.0

Q ss_pred             EEEEEEecCCCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+|+|.|+..||||+|.||.+..    ..+|||+.|.|+|||+++|+|++||+|++|
T Consensus         2 v~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~V   59 (92)
T d2fe5a1           2 IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV   59 (92)
T ss_dssp             EEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEe
Confidence            578999999889999999998632    468999999999999999999999999986

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=96.30  Aligned_cols=57  Identities=25%  Similarity=0.501  Sum_probs=51.3

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.++|+|.|+..+|||+|+||.+.       .+.+|||++|.|++||+++|+|++||+|++|
T Consensus         6 ~g~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~V   69 (107)
T d1uhpa_           6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV   69 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEE
T ss_pred             CCCEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEE
Confidence            46789999999988999999999763       2568999999999999999999999999986

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.5e-16  Score=93.55  Aligned_cols=57  Identities=28%  Similarity=0.463  Sum_probs=50.2

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |++.++|+|.|+..+|||+|.++.+.       ...+|||+.|.|+|+|+++|+|++||+|++|
T Consensus         2 pg~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~V   65 (99)
T d1ozia_           2 PGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAV   65 (99)
T ss_dssp             TTCEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEE
Confidence            57899999999988999999865541       2468999999999999999999999999986

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.6e-16  Score=95.23  Aligned_cols=57  Identities=28%  Similarity=0.493  Sum_probs=51.9

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++++|+|.|+..+|||+|.++.+.  ...+|||++|.|+|||+++|+|++||+|++|
T Consensus         6 ~g~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~I   64 (110)
T d1um1a_           6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV   64 (110)
T ss_dssp             CCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEE
Confidence            46799999999988999999999874  3568999999999999999999999999986

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-16  Score=93.24  Aligned_cols=55  Identities=35%  Similarity=0.634  Sum_probs=48.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCC-----CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKD-----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~-----~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |+++|+|.|+..+|||+|.|+..     ....+|||++|.|+|||+++|+|++||+|++|
T Consensus         2 e~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~V   61 (94)
T d1wf8a1           2 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV   61 (94)
T ss_dssp             EEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEE
T ss_pred             eEEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEE
Confidence            57899999998899999998643     22458999999999999999999999999986

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=4.9e-16  Score=94.11  Aligned_cols=57  Identities=25%  Similarity=0.510  Sum_probs=52.7

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++|.+.++|+|.|+..||||+|.|+.+  ..++||+.|.|+|+|+++|+|++||+|++|
T Consensus         5 ~~~~~~r~V~l~k~~~glG~~i~~~~~--~~gv~V~~v~~gs~A~~~G~l~~GD~Il~I   61 (102)
T d1tp5a1           5 DIPREPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV   61 (102)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGG--GCCEEEEEECTTSHHHHHSCCCTTEEEEEE
T ss_pred             CCCCCCEEEEEEeCCCcccEEEEeccC--CCCEEEEEecCCchHHHcCCCcccCEEEEE
Confidence            577889999999998899999999876  468999999999999999999999999986

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=94.47  Aligned_cols=58  Identities=26%  Similarity=0.467  Sum_probs=52.9

Q ss_pred             CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+++..++|.|...||||+|.||.+. ..+|||++|.|+++|+++|+|++||+|++|
T Consensus        15 ~~~~~~~~v~l~k~~~glG~~i~gg~~~-~~~i~I~~v~~gg~A~~~g~L~~GD~Il~I   72 (123)
T d1ueqa_          15 QLKGTFLSTTLKKSNMGFGFTIIGGDEP-DEFLQVKSVIPDGPAAQDGKMETGDVIVYI   72 (123)
T ss_dssp             TCCSEEEEEEEECCTTSCSEEEECCSSS-SCCCEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             HcCCeEEEEEEEECCCeeCEEEEeecCC-CCCEEEEEECCCCHHHHcCCCeeCCEEEEE
Confidence            3457889999999989999999999884 578999999999999999999999999986

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.7e-16  Score=93.71  Aligned_cols=56  Identities=36%  Similarity=0.554  Sum_probs=51.4

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++.|.|.|. ..+|||+|.||.+....++||+.|.|+|+|+++|+|++||+|++|
T Consensus         7 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~V   63 (107)
T d1x6da1           7 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI   63 (107)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEE
T ss_pred             CCcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEE
Confidence            46888999988 679999999999876789999999999999999999999999986

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.8e-16  Score=91.72  Aligned_cols=56  Identities=30%  Similarity=0.582  Sum_probs=50.2

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++++|+|.|+..+|||+|.||.+..  ..++||++|.++|+|+++|+|++||+|++|
T Consensus         1 P~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~I   58 (88)
T d2fnea1           1 PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV   58 (88)
T ss_dssp             CEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEE
T ss_pred             CeEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEE
Confidence            36789999999889999999987742  468999999999999999999999999986

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=89.98  Aligned_cols=55  Identities=31%  Similarity=0.681  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.+|+|.|. .||||+|.|+.+.  ...+|||+.|.|+|||+++|+|++||+|++|
T Consensus         3 pei~~v~l~~~-~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~V   59 (92)
T d1t2ma1           3 PEIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV   59 (92)
T ss_dssp             CEEEEEEEECS-SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEE
T ss_pred             CeEEEEEEeCC-CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeee
Confidence            46788999885 6899999999874  3468999999999999999999999999986

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-15  Score=90.20  Aligned_cols=54  Identities=28%  Similarity=0.430  Sum_probs=44.9

Q ss_pred             EEEEEEecC-CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++|+|.|. ..+|||+|.||.+.        ...+|||++|.|+|||+++|+|++||+|++|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~V   64 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV   64 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEE
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEE
Confidence            478999999 67999999998752        2458999999999999999999999999986

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=91.31  Aligned_cols=56  Identities=38%  Similarity=0.626  Sum_probs=50.0

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.++|.|+..||||+|.||.+.     .+.+|||++|.|+++|+++|+|++||+|++|
T Consensus         6 ~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~I   66 (105)
T d1whaa_           6 SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI   66 (105)
T ss_dssp             CEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEE
T ss_pred             CCCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEE
Confidence            3468899999988999999999863     2568999999999999999999999999986

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.5e-15  Score=88.98  Aligned_cols=54  Identities=30%  Similarity=0.539  Sum_probs=49.6

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|+|.|...+|||+|.|+.+. ..++||++|.|++||+++|+|++||+|++|
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g~~~~-~~~v~I~~I~~g~~A~~~g~L~~GD~Il~I   56 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISGTEEP-FDPIIISSLTKGGLAERTGAIHIGDRILAI   56 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSST-TSCCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             EEEEEEEEECCCcEeEEEEecccC-CCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            578999999988999999998774 567999999999999999999999999986

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-15  Score=91.35  Aligned_cols=54  Identities=26%  Similarity=0.478  Sum_probs=49.0

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|...||||+|.||.+. ..++||+.|.|++||+++|+|++||+|++|
T Consensus         9 ~~~~V~l~k~~~glG~~i~gg~~~-~~~i~V~~v~~g~~A~~~G~L~~GD~Il~V   62 (103)
T d1uepa_           9 KELDVHLRRMESGFGFRILGGDEP-GQPILIGAVIAMGSADRDGRLHPGDELVYV   62 (103)
T ss_dssp             EEECCEEESSSSSCCEEECCCCST-TSCCBEEEECTTSTTGGGTCCCTTCEEEEE
T ss_pred             EEEEEEEEeCCceEeEEEEecccC-CCcEEEEEECCCChHHHcCCCCcCCEEEEE
Confidence            456789999988999999999874 578999999999999999999999999986

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=2.7e-15  Score=88.97  Aligned_cols=55  Identities=25%  Similarity=0.532  Sum_probs=48.5

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCC-----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~-----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|+|.|. ..+|||+|.||.+..     ..+|||+.|.|+|||+++|+|++||+|++|
T Consensus         3 ~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~V   63 (94)
T d1ihja_           3 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL   63 (94)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEE
T ss_pred             EEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEE
Confidence            4788999997 679999999987632     347999999999999999999999999986

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=4.6e-15  Score=89.92  Aligned_cols=52  Identities=27%  Similarity=0.450  Sum_probs=47.6

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+|+|.|. ..||||+|.++.+  ..+|||+.|.|+|||+++|+|++||+|++|
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~--~~~i~I~~v~~ggpA~~~G~L~~GD~Il~I   54 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV   54 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSS--SSCEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             eEEEEEEECCCCcEeEEEEeecC--CCCEEEEEEcCCCHHHHhhhcccccEeEEE
Confidence            678999987 6799999999876  478999999999999999999999999986

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.2e-15  Score=89.28  Aligned_cols=54  Identities=30%  Similarity=0.546  Sum_probs=48.8

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|. ..+|||+|+||.+. ..++||+.|.|++||+++|+|++||+|++|
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~-~~~i~V~~V~~~~~A~~~G~L~~GD~Il~I   58 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGREN-KMPILISKIFKGLAADQTEALFVGDAILSV   58 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTTCCCTTEEEEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccC-CCCEEEEEEcCCCceeeCCCCCccCEEEEE
Confidence            4578999997 67999999999874 578999999999999999999999999986

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=5.3e-15  Score=88.43  Aligned_cols=55  Identities=33%  Similarity=0.625  Sum_probs=48.5

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++++++.|. .||||+|.||.+. ...+|||+.|.|+|+|+++|+|++||+|++|
T Consensus         7 ~~~~~v~~~~~-~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V   62 (96)
T d1wi4a1           7 PAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI   62 (96)
T ss_dssp             TTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEE
T ss_pred             CcEEEEEecCC-CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEE
Confidence            46788888875 6899999999874 3568999999999999999999999999986

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-15  Score=93.96  Aligned_cols=59  Identities=24%  Similarity=0.478  Sum_probs=50.5

Q ss_pred             CCCCcEEEEEEecC--CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         18 SLGPDLVVVTLERS--HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        18 ~~~~e~~~v~L~k~--~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ....++..|+|.|.  ..+|||+|.++.+. .+.+|||+.|.|+|||+++|+|++||+|++|
T Consensus        15 ~~~~e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~I   76 (124)
T d1wh1a_          15 REELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI   76 (124)
T ss_dssp             CSSCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEE
T ss_pred             CCCceeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEE
Confidence            33346778999884  57999999999874 3678999999999999999999999999986

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-15  Score=90.18  Aligned_cols=53  Identities=26%  Similarity=0.469  Sum_probs=49.0

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.|++.|...+|||+|.||.+.....+||+.|.|+++|+++|+|++||+||+|
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~V   60 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV   60 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEE
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEE
Confidence            56888898889999999999876678999999999999999999999999986

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=86.25  Aligned_cols=57  Identities=37%  Similarity=0.666  Sum_probs=50.2

Q ss_pred             CCCcEEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+..+++|.|...||||+|.|+.+.     ...+|||+.|.|+|||+++| |++||+|++|
T Consensus         5 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~V   66 (97)
T d1x5qa1           5 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV   66 (97)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             cCCeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEE
Confidence            345778999999988999999999863     24689999999999999999 9999999986

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.7e-15  Score=89.24  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=49.9

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcc-cCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASK-TGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~-dG~L~~GD~ileV   76 (76)
                      ..++++|+|.|+ ..+|||+|.||.+. ..++||++|.|+|||++ +|+|++||+|++|
T Consensus         6 ~~~~~~v~l~~~~~g~lG~~l~gg~d~-~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~V   63 (106)
T d2cs5a1           6 HDNLVLIRMKPDENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI   63 (106)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGG-TEEEEEEEECSSSTTTSSSSCCCTTCEEEEE
T ss_pred             CCcEEEEEEEeCCCCCccEEEEeeecC-CCCEEEEEEcCCCcchhccCCCCCCCEEEEE
Confidence            456889999998 56799999999884 57899999999999998 7999999999986

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-14  Score=90.42  Aligned_cols=55  Identities=29%  Similarity=0.611  Sum_probs=49.7

Q ss_pred             CCcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.++|+|.|. ..+|||+|.||.+. ..+|||+.|.|+++|+++| |++||+||+|
T Consensus        18 ~~~~~~v~l~~~~~~~lGf~i~gg~~~-~~gv~V~~V~~g~~A~~~g-L~~GD~Il~I   73 (128)
T d1uf1a_          18 GGDEKKVNLVLGDGRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEV   73 (128)
T ss_dssp             CSSEEEEEEECCSSCCCCEEEECCTTT-TCCCEEEEECTTCHHHHHT-CCTTCEEEEE
T ss_pred             CCCeEEEEEEECCCCccCEEEEeeccC-CCCEEEEEECCCChHHhcC-CCCCCEEEEE
Confidence            457789999998 67999999999985 5689999999999999988 9999999986

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-15  Score=91.14  Aligned_cols=56  Identities=32%  Similarity=0.615  Sum_probs=49.4

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+++|+|.|. ..+|||+|.||.+.        ...+|||+.|.|++||+++|+|++||+||+|
T Consensus         8 ~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~V   72 (111)
T d1ujua_           8 PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV   72 (111)
T ss_dssp             CSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBB
T ss_pred             CCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeee
Confidence            45678999998 57999999998762        2468999999999999999999999999986

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=85.56  Aligned_cols=52  Identities=23%  Similarity=0.415  Sum_probs=44.7

Q ss_pred             EEEEecC-CCcccEEEecCC-CCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLERS-HTGLGISLAGHK-DRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k~-~~gLG~si~Gg~-~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .|+|.|. +.+|||+|.++. +....++||++|.|+|||+++|+|++||+|++|
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~V   54 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI   54 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEE
Confidence            3788888 679999997544 444678999999999999999999999999986

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.1e-14  Score=87.22  Aligned_cols=56  Identities=25%  Similarity=0.452  Sum_probs=49.4

Q ss_pred             CcEEEEEEecC-CCcccEEEecCCCC-CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERS-HTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~-~~gLG~si~Gg~~~-~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ....+|+|.|. ..+|||++.++.+. ...++||+.|.|+|+|+++|+|++||+|++|
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V   66 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI   66 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEE
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEee
Confidence            45678999987 67999999998874 3568999999999999999999999999986

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-15  Score=91.91  Aligned_cols=55  Identities=35%  Similarity=0.652  Sum_probs=50.7

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      -+.++|+|.|+.+||||+|.||.+. ..++||+.|.|+++|+++|+|++||+|++|
T Consensus        10 ~e~~~v~l~k~~~glG~~i~gg~~~-~~~i~I~~v~~gg~A~~~g~L~~GD~Il~I   64 (103)
T d1wfva_          10 FDYFTVDMEKGAKGFGFSIRGGREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEI   64 (103)
T ss_dssp             SCCEECCEECCTTSSSBCCEEETTT-TEEEECCCBCTTSHHHHHCSSCTTCEEEEE
T ss_pred             ceEEEEEEEeCCCccCEEEEeeccC-CCCEEEEEEcCCChHHhcCCCCCCCEEEEE
Confidence            4678899999988999999999985 578999999999999999999999999986

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.5e-14  Score=89.83  Aligned_cols=58  Identities=22%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...+.+.|+|.|. ..+|||+|.||.+.   ...++||+.|.|+++|+++|+|++||+|++|
T Consensus        12 ~~~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~I   73 (122)
T d1v5qa_          12 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI   73 (122)
T ss_dssp             CCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEE
T ss_pred             ccceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEE
Confidence            3457889999997 67999999999864   2468999999999999999999999999986

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.4e-14  Score=86.53  Aligned_cols=53  Identities=26%  Similarity=0.548  Sum_probs=47.8

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|+|.|. ..+|||+|.||.+. ..+|||+.|.|++||+++| |++||+||+|
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~-~~gi~V~~V~~~s~A~~~G-L~~GD~Il~V   68 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKAS-QLGIFISKVIPDSDAHRAG-LQEGDQVLAV   68 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSS-CCCCEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             cCEEEEEEeCCCCCcceEEEccccC-CCCEEEEEECCCChhHhcc-cccCCEEEEE
Confidence            3578999998 57999999999874 5789999999999999998 9999999986

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.5e-14  Score=88.53  Aligned_cols=55  Identities=27%  Similarity=0.492  Sum_probs=47.0

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++.+.+. ...+|||+|.||.+.+..+|||+.|.|+|+|+++|+|++||+|++|
T Consensus        17 ~~v~~~~~~-~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~V   71 (118)
T d1v6ba_          17 KDVRLLRIK-KEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI   71 (118)
T ss_dssp             CCEEEEEEE-SCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEE
T ss_pred             ceEEEEEec-CCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeE
Confidence            345555544 4579999999999976678999999999999999999999999986

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=86.00  Aligned_cols=58  Identities=28%  Similarity=0.451  Sum_probs=50.5

Q ss_pred             CCCcEEEEEEecC-CCcccEEEecCCCC---CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS-HTGLGISLAGHKDR---TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~~---~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.+..+|.|.|. ..+|||+|.||.+.   ...++||+.|.+++||+++|+|++||+|++|
T Consensus         5 ~~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~I   66 (99)
T d1x5ra1           5 VHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSI   66 (99)
T ss_dssp             CSSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEE
T ss_pred             ceeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            3457788999988 67999999999762   3568999999999999999999999999986

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.4e-14  Score=85.62  Aligned_cols=55  Identities=18%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCC------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRT------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|. ..+|||+|.++.+..      ..++||.+|.|+++|+++|+|++||+|++|
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~V   71 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV   71 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEE
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEe
Confidence            5688999997 679999999998742      357999999999999999999999999986

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=7.5e-14  Score=82.58  Aligned_cols=55  Identities=27%  Similarity=0.370  Sum_probs=48.9

Q ss_pred             CCCcEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         19 LGPDLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        19 ~~~e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .|.|++.|+|.|.  ..+|||+|.++.+  ..++||+.|.++|+|+++| |++||+|++|
T Consensus         3 ~p~e~~~v~l~k~~~~~~~Gf~i~~~~~--~~g~~V~~V~~~g~A~~~g-L~~GD~Il~V   59 (91)
T d1m5za_           3 TPVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV   59 (91)
T ss_dssp             SCCEEEEEEEECCTTCSSSSEEEEECTT--SSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCCceEEEEEEECCCCCceeEEEeccCC--CCCEEEEEECCCChhHhCc-CCCCCEEEEE
Confidence            4568999999997  4689999999876  4689999999999999988 9999999986

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-14  Score=87.66  Aligned_cols=54  Identities=26%  Similarity=0.483  Sum_probs=49.3

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|+|.|. ..+|||+|.++.+....++||+.|.|+++|+++|+|++||+|++|
T Consensus        16 p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~V   70 (117)
T d1v62a_          16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI   70 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEE
T ss_pred             CEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeE
Confidence            466999998 568999999999876789999999999999999999999999986

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.7e-14  Score=86.03  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=49.3

Q ss_pred             CCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        17 ~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+...+.++|+|.|+..+|||+|.|+.+   .+|||+.|.|++||+++ .|++||+||+|
T Consensus        14 ~p~~~~~r~v~l~k~~~glG~~i~gg~~---~gi~V~~V~~gs~A~~~-gL~~GD~Il~I   69 (117)
T d1uita_          14 RPYVEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQA-GLEYGDQLLEF   69 (117)
T ss_dssp             CCCSCCCEEEEEECSSCCCCEEEEECTT---SCEEEEEECTTSHHHHH-TCCTTCEECEE
T ss_pred             CCCCCCCEEEEEEeCCCccCEEEEccCC---CCEEEEEEecCChHHhC-CCCCCCEeeeE
Confidence            3455678999999998899999999875   58999999999999986 59999999986

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.4e-14  Score=81.85  Aligned_cols=51  Identities=25%  Similarity=0.411  Sum_probs=45.7

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|+|.|. ..+|||+|.++.+   .++||++|.|+|||+++|+|++||+|++|
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~---~~~~I~~v~~gg~A~~~g~l~~GD~Il~I   53 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNEL---NHCIVARIMHGGMIHRQGTLHVGDEIREI   53 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCG---GGEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCC---CCEEEEEECCCCHHHHcCCCccCcEEEEE
Confidence            367999998 7799999997753   58999999999999999999999999986

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.4e-14  Score=84.70  Aligned_cols=55  Identities=33%  Similarity=0.674  Sum_probs=48.7

Q ss_pred             CCcEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++.|+|.|.  ..+|||+|.|+.+. ..++||+.|.+++||+++| |++||+|++|
T Consensus         6 ~~~~~~v~l~r~~~~~glG~~i~gg~~~-~~~i~V~~v~~gg~A~~~g-L~~GD~Il~I   62 (101)
T d1ueza_           6 SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRV   62 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTT-TCCEEEEEECTTSHHHHHT-CCSSCCEEEE
T ss_pred             CCCEEEEEEEECCCCCeeCEEEEecccC-CCCEEEEEECCCChHHhcC-CCCCcEEEEE
Confidence            357889999886  46899999999985 5689999999999999988 9999999986

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.3e-13  Score=80.59  Aligned_cols=51  Identities=33%  Similarity=0.627  Sum_probs=46.1

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|+|.|+..||||+|.++..  ..++||..|.|++||++.| |++||+|++|
T Consensus         4 Pr~v~l~k~~~g~Gf~i~~~~~--~~~~~V~~V~~g~~A~~aG-l~~GD~Il~V   54 (91)
T d1g9oa_           4 PRLCCLEKGPNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEV   54 (91)
T ss_dssp             CEEEEEECBTTBCCEEEEECTT--CSSEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CEEEEEEECCCeeeEEEEecCC--CCCEEEEEEcCCCHHHHcC-CCCCCEEEEE
Confidence            3679999998899999998865  5789999999999999988 9999999986

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=5.5e-14  Score=84.17  Aligned_cols=54  Identities=28%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             EEEEEEecC--CCcccEEEecCCCC--------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS--HTGLGISLAGHKDR--------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~--~~gLG~si~Gg~~~--------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|+|.|.  ..+|||+|.||.+.        ...+|||+.|.|+|||+++|+|++||+|++|
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~V   66 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV   66 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEE
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeE
Confidence            357889886  56899999998762        1357999999999999999999999999986

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.3e-14  Score=88.30  Aligned_cols=52  Identities=33%  Similarity=0.638  Sum_probs=44.0

Q ss_pred             EEEEecC-CCcccEEEecCCCCC---CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         25 VVTLERS-HTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        25 ~v~L~k~-~~gLG~si~Gg~~~~---~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +|+|.|. ..||||+|+||.+.+   +.++||+.|.|+|+|+++|+|++||+|++|
T Consensus        28 ~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V   83 (127)
T d1wg6a_          28 EIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV   83 (127)
T ss_dssp             EEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEE
T ss_pred             EEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeE
Confidence            3444444 678999999998743   358999999999999999999999999986

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.4e-13  Score=80.75  Aligned_cols=52  Identities=23%  Similarity=0.457  Sum_probs=45.3

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+.|.|.+. ..||||+|.||.+. ..++||+.|.+++||++.| |++||+|++|
T Consensus         9 ~~~v~i~~~~~~glG~~i~~g~~~-~~gi~V~~V~~gs~A~~~g-L~~GD~Il~V   61 (101)
T d1x5na1           9 EKKVFISLVGSRGLGCSISSGPIQ-KPGIFISHVKPGSLSAEVG-LEIGDQIVEV   61 (101)
T ss_dssp             SEEEEECCCSSCCCCEEEEECCSS-SCSEEEEEECTTSTTTTTT-CCTTCEEEEE
T ss_pred             cEEEEEEeeCCCcccEEEeccCCC-CCCEEEEEECCCChHHhCC-CCcccEEEEE
Confidence            466777665 78999999999885 5789999999999999876 9999999986

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.7e-14  Score=85.45  Aligned_cols=45  Identities=27%  Similarity=0.449  Sum_probs=40.7

Q ss_pred             CCcccEEEecCCCCC--CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~--~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+|||+|.||.+.+  +.+|||+.|.|+|+|+++|+|++||+|++|
T Consensus        29 ~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~V   75 (108)
T d2cssa1          29 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEW   75 (108)
T ss_dssp             SSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             CCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEE
Confidence            578999999997743  469999999999999999999999999986

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=6.9e-13  Score=79.82  Aligned_cols=53  Identities=25%  Similarity=0.562  Sum_probs=46.1

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCC-----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~-----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+ ..+|||+|.||.+..     ..+|||++|.|+|||+  +.|++||+|++|
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~I   65 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV   65 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEE
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEE
Confidence            4678999998 679999999998742     4689999999999996  679999999986

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=4.8e-13  Score=80.36  Aligned_cols=51  Identities=29%  Similarity=0.508  Sum_probs=45.4

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.|+|.|. ..+|||++.++.    .++||++|.|+|+|+++|+|++||+|++|
T Consensus        18 ~i~~V~l~k~~~~~lG~~v~~~~----~~i~I~~V~~gs~A~~~g~l~~GD~Il~V   69 (100)
T d1va8a1          18 TVKIVRIEKARDIPLGATVRNEM----DSVIISRIVKGGAAEKSGLLHEGDEVLEI   69 (100)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECS----SSEEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             eEEEEEEEeCCCCCccEEEEecC----CCEEEEEECCCChhhhhcccCccCEEEEE
Confidence            4678999998 678999998653    57999999999999999999999999986

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-12  Score=80.48  Aligned_cols=54  Identities=30%  Similarity=0.596  Sum_probs=45.4

Q ss_pred             EEEEEEecC-------CCcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-------HTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-------~~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...++|.|.       ..||||+|.||.+.+    ..+|||+.|.|+++|+++|+|++||+|++|
T Consensus        13 ~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~I   77 (117)
T d1ujda_          13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW   77 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEE
T ss_pred             ceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            456777665       258999999998742    358999999999999999999999999986

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.8e-13  Score=77.42  Aligned_cols=50  Identities=28%  Similarity=0.416  Sum_probs=44.0

Q ss_pred             EEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ++|+|.+ ..+|||+|.||.+. ..++||+.|.|++||++ ++|++||+|++|
T Consensus         3 ~~V~l~~-~~~~Gf~i~gg~~~-~~~v~V~~v~~gs~A~~-~~L~~GD~Il~V   52 (85)
T d1rgwa_           3 YSVTLTG-PGPWGFRLQGGKDF-NMPLTISRITPGSKAAQ-SQLSQGDLVVAI   52 (85)
T ss_dssp             EEEEECC-SSCCCEEECCCGGG-TSCCBEEEECTTSHHHH-SSCCCCSBEEEE
T ss_pred             EEEEecC-CCCCCEEEEeecCC-CCCEEEEEecCCChHHh-CCCCCCCEEEEE
Confidence            6788876 57999999999985 56799999999999997 679999999986

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-12  Score=77.26  Aligned_cols=52  Identities=29%  Similarity=0.520  Sum_probs=42.5

Q ss_pred             cEEEEEEecCCCcccEEEecCCCC-------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~-------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +...|++.|+ .+|||+|.||.+.       .+.+|||+.|.|++||++  +|++||+||+|
T Consensus        11 ~~v~v~~~~~-~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~V   69 (103)
T d2h3la1          11 QEIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQA   69 (103)
T ss_dssp             EEEEEEEECS-SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEE
T ss_pred             EEEEEEEccC-CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEE
Confidence            3455666664 6899999999863       246899999999999975  69999999986

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.1e-12  Score=75.89  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=46.3

Q ss_pred             cEEEEEEecC-CCcccEEEecCCCCC-----------CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERS-HTGLGISLAGHKDRT-----------KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~-~~gLG~si~Gg~~~~-----------~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|.|.|. +.+|||++.|+.+.+           ..++||..|.|+|||++.| |++||+|++|
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~I   70 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEV   70 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            4578999887 779999999997632           3479999999999999987 9999999986

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.1e-12  Score=80.53  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             CcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        21 ~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.+++|.|+..||||+|..+    ...+||..|.|+|||+++|+|++||+|++|
T Consensus        26 ~~~~~v~l~~g~~GlG~~i~~~----~~~i~V~~v~~gg~A~~~G~l~~GD~Il~I   77 (126)
T d1wifa_          26 NKVIQTKLTVGNLGLGLVVIQN----GPYLQISHLINKGAAASDGILQPGDVLISV   77 (126)
T ss_dssp             CCEEEEEEECCTTCCCCCEEEE----TTEEEECCCCTTSSGGGCSSSCTTCBEEEE
T ss_pred             CcEEEEEEeeCCCcEEEEEEec----CCcEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            4688999999999999999865    356999999999999999999999999986

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.6e-12  Score=74.09  Aligned_cols=46  Identities=20%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             cEEEEEEecCC-CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~-~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.++|+|.|+. .+|||+|.++        +|++|.+++||+++| |++||+|++|
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~g--------~V~~v~~g~~A~~~G-l~~GD~Il~I   50 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEI   50 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSEEEEEE
T ss_pred             CCEEEEEEeCCCCCcCEEEEEE--------EEEEECCCChHHhcC-cCCCCEEEEe
Confidence            56889999994 4699999876        699999999999999 9999999986

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.5e-12  Score=73.27  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=40.7

Q ss_pred             EEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        26 v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |+|.|+..||||++.|+     .++||++|.|++||++.| |++||+|++|
T Consensus         1 v~l~r~~~g~Gf~l~~~-----~~~~V~~V~~gspA~~aG-L~~GD~Il~V   45 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQL   45 (77)
T ss_dssp             EEEECBTTBTSEEEECS-----SSCEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CEEecCCCcccEEEECC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            68899988999999964     358999999999999998 9999999986

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.9e-12  Score=73.48  Aligned_cols=49  Identities=27%  Similarity=0.383  Sum_probs=43.3

Q ss_pred             EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++|.|.|+ ..+|||++.+..    .++||.+|.++|||++.| |++||+|++|
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~----~g~~V~~v~~gspA~~aG-L~~GD~Il~V   52 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSID----NGIFVQLVQANSPASLVG-LRFGDQVLQI   52 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEET----TEEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             CEEEEEEeCCCCCEeEEEEeCC----CCEEEEEECCCCHHHHcC-CCCccEEEEE
Confidence            478999998 668999998763    479999999999999987 9999999986

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.3e-13  Score=82.32  Aligned_cols=55  Identities=29%  Similarity=0.396  Sum_probs=46.2

Q ss_pred             hhhhcCCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         12 VKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        12 ~~~~~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..++|..    .++|+|.|+..+|||+|.|+.     ++||+.|.|++||+++| |++||+|++|
T Consensus         9 ~~~~~~~----pr~v~l~k~~~g~Gf~i~g~~-----~v~V~~V~~~spA~~~G-L~~GD~Il~I   63 (111)
T d1vaea_           9 ASKRWSP----PRGIHFTVEEGDLGFTLRGNT-----PVQVHFLDPHCSASLAG-AKEGDYIVSI   63 (111)
T ss_dssp             CCCEECC----CCCCCEECCSSCCSCCEESSS-----SCEECCCCTTSSHHHHH-CCTTCEEEEE
T ss_pred             CccCCCC----CEEEEEEECCCccCEEEECCc-----cEEEEEEcCCChHHhcc-cCcccEEEEE
Confidence            3456644    246889999889999998753     58999999999999998 9999999986

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2e-12  Score=76.66  Aligned_cols=52  Identities=19%  Similarity=0.348  Sum_probs=44.2

Q ss_pred             cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +..+|++. +..+|||+|.||.+. ..+|||..|.|++||++ ++|++||+|++|
T Consensus         6 ~~~tv~~~-g~~~~Gf~i~gg~d~-~~~i~V~~v~~gs~A~~-~gL~~GD~Il~V   57 (94)
T d1vb7a_           6 SGLTVDVA-GPAPWGFRISGGRDF-HTPIIVTKVTERGKAEA-ADLRPGDIIVAI   57 (94)
T ss_dssp             CCEEEEEC-SSSCCSBCCEEETTT-TEEEECCCBCTTSSHHH-HTCCTTCEEEEE
T ss_pred             ceEEEEEE-CCCcCCEEEEeeccC-CCCEEEEeccCCChhhh-CCCCCCCEEEEE
Confidence            34667774 457999999999985 56899999999999998 569999999986

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.9e-11  Score=73.42  Aligned_cols=51  Identities=33%  Similarity=0.444  Sum_probs=43.6

Q ss_pred             EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ...|++.. ..+|||+|.||.+. ..++||+.|.|+++|++ ++|++||+|++|
T Consensus         6 ~~~v~~~g-~~g~Gf~i~gg~d~-~~~v~V~~v~~g~~a~~-~~L~~GD~Il~I   56 (103)
T d1wf7a_           6 SGSVSLVG-PAPWGFRLQGGKDF-NMPLTISSLKDGGKASQ-AHVRIGDVVLSI   56 (103)
T ss_dssp             CEEEEEES-SSCCSCCEEEETTT-TEEEEECCCCTTCHHHH-TTCCTTCBEEEE
T ss_pred             eeEEEEEC-CCCccEEEEcccCC-CCCEEEEecCCCChHHH-CCCCCCCEEEEE
Confidence            45677754 57999999999985 57899999999999885 789999999986

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.6e-11  Score=68.78  Aligned_cols=44  Identities=34%  Similarity=0.622  Sum_probs=38.1

Q ss_pred             EEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         24 VVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        24 ~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +++.|.|.  ..+|||++.||        +|.+|.|+|+|++ ++|++||+|++|
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g--------~V~~V~~gs~A~~-~gL~~GD~Il~I   47 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAER-GGVRVGHRIIEI   47 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT--------EEEEECTTSHHHH-HTCCSSCEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC--------EEEEEcCCCHHHH-CCCCCCCEEEEE
Confidence            56777775  56999999876        7999999999998 579999999986

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.6e-11  Score=73.92  Aligned_cols=48  Identities=25%  Similarity=0.416  Sum_probs=41.6

Q ss_pred             EEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        26 v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      |.| ++..+|||+|.||.|. ..++||+.|.|++||++ ++|++||+|++|
T Consensus         9 v~~-~g~~~~Gf~l~gg~d~-~~~i~V~~v~~g~~A~~-~~L~~GD~Il~V   56 (103)
T d1v5la_           9 VVL-PGPAPWGFRLSGGIDF-NQPLVITRITPGSKAAA-ANLCPGDVILAI   56 (103)
T ss_dssp             CEE-ESSSCCSBCCEEETTT-TEEEECSCBCTTSTTGG-GTCCTTCBEEEE
T ss_pred             EEE-ECCCCCCEEEEeecCC-CCCEEEEEccCCChHHh-CCCCCCCEEEEE
Confidence            444 5678999999999985 57899999999999985 779999999986

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.5e-10  Score=65.38  Aligned_cols=50  Identities=20%  Similarity=0.307  Sum_probs=39.1

Q ss_pred             CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+.+|+|.|+..||||+|.++.+.    .++..+   .+|+.+++|++||+|++|
T Consensus         8 ~~e~~~v~l~k~~~glGf~i~g~~~~----~~~~~~---~~~~~~~~L~~GD~Il~V   57 (96)
T d1ujva_           8 QAELMTLTIVKGAQGFGFTIADSPTG----QRVKQI---LDIQGCPGLCEGDLIVEI   57 (96)
T ss_dssp             CCCCEEEEEECCSSSSSEEEEEETTE----EEEEEE---SCGGGSTTCCSSCEEEEE
T ss_pred             CceEEEEEEEeCCCcccEEEEeeCCC----ceEeec---cCcccccCCCCCCEEEEE
Confidence            35789999999988999999998652    233333   356677899999999986

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.72  E-value=7.4e-09  Score=60.47  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=36.9

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..|+|+++....+. ...++|..|.+++||++.| |++||+|++|
T Consensus         4 ~~GiGi~i~~~~~~-~~~v~V~~v~~gsPA~~AG-l~~GD~I~~I   46 (92)
T d1fc6a3           4 VTGVGLEITYDGGS-GKDVVVLTPAPGGPAEKAG-ARAGDVIVTV   46 (92)
T ss_dssp             CBBCSEEEEECTTC-SSCEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             eEEEEEEEEEcCCC-CceEEEEEecCCCChhHHh-hHcCCcceec
Confidence            46999999765543 4689999999999999998 9999999986

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=9.2e-08  Score=55.02  Aligned_cols=42  Identities=24%  Similarity=0.477  Sum_probs=35.6

Q ss_pred             CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      +.+||+.+....+  ..+++|.+|.|++||++.| |++||.|++|
T Consensus         2 ~~~LGv~~~~~~~--~~Gv~V~~V~~~spA~~aG-l~~GD~I~~i   43 (88)
T d2z9ia1           2 HASLGVQVTNDKD--TLGAKIVEVVAGGAAANAG-VPKGVVVTKV   43 (88)
T ss_dssp             CEECCEEEECCC---CCSEEEEEECTTSTTGGGT-CCTTCEEEEE
T ss_pred             CCEEeEEEEecCC--CCcEEEEEECCCCHHHHcC-CCCCCEEEEe
Confidence            3578999886554  5789999999999999988 9999999985

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=8e-06  Score=46.65  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=26.4

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++.| |++||.|++|
T Consensus        24 ~~Gv~V~~V~~~spA~~aG-l~~GDvI~~i   52 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGA   52 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGT-CCSSCEEEEE
T ss_pred             CCeEEEEEECCCCHHHHcC-CCCCcEEEEE
Confidence            5689999999999999976 9999999985

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=3.2e-05  Score=45.34  Aligned_cols=27  Identities=26%  Similarity=0.188  Sum_probs=24.3

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .+++|..|.+++||++ + |++||.|++|
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~i   29 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESI   29 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEE
Confidence            3799999999999986 6 9999999975

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.6e-05  Score=44.93  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++.| |++||.|++|
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~i   58 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAI   58 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEE
Confidence            4689999999999999966 9999999985

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=1.7e-05  Score=45.65  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=26.1

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|..|.|++||++.| |++||.|++|
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i   54 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSL   54 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBS
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEE
Confidence            3589999999999999976 9999999986

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=2.4e-05  Score=45.45  Aligned_cols=29  Identities=24%  Similarity=0.539  Sum_probs=25.2

Q ss_pred             CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      ..+++|.+|.+++||++.| |++||.|++|
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~i   53 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISV   53 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBS
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEE
Confidence            3589999999999999976 9999999986

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.66  E-value=0.00094  Score=38.19  Aligned_cols=29  Identities=14%  Similarity=0.001  Sum_probs=25.2

Q ss_pred             CcEEEEEeCCC--------ChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPS--------GSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~g--------g~A~~dG~L~~GD~ileV   76 (76)
                      ..+.|.+|.++        +||++.|-+|+||.|++|
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~I   48 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDI   48 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEE
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEE
Confidence            56889999987        999998866999999986

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=95.66  E-value=0.0018  Score=36.45  Aligned_cols=28  Identities=14%  Similarity=0.069  Sum_probs=24.7

Q ss_pred             CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106         48 MAVFVCGLNPSGSASKTGSVLVGDELLEI   76 (76)
Q Consensus        48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV   76 (76)
                      .++.|..+.++++|++.| |++||.|++|
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~i   46 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVAL   46 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEE
Confidence            578889999999999976 9999999975