Psyllid ID: psy18133

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRLPPL
cEEcccccccHHcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccc
cHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccEccccccEcccccEccEHHHHHHHHHHHHHccccccccccccccEcccHHHHHHHcccccccccc
mvqhpigkldainLSKAVEFILSCCnfdggfgsrpgseshagltYCCVGFLSITGHLHEIDADKLAWWLAergdhssdnlqpsqlsWYNFVRAHfegdffsgrfcnrasLVSLdvesggisdrpldipdpfhtLFGVAaltmldpptpdvlpvdptycmpryvierlnlnpqrlppl
mvqhpigkldaiNLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIErlnlnpqrlppl
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAAltmldpptpdvlpvdptYCMPRYVIErlnlnpqrlppl
******GKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERG*********SQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLN*********
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRLPPL
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRLPPL
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRLPPL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSSDNLQPSQLSWYNFVRAHFEGDFFSGRFCNRASLVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRLPPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query177 2.2.26 [Sep-21-2011]
P53612339 Geranylgeranyl transferas yes N/A 0.915 0.477 0.483 5e-41
Q08603331 Geranylgeranyl transferas yes N/A 0.915 0.489 0.483 6e-41
P53611331 Geranylgeranyl transferas yes N/A 0.915 0.489 0.477 1e-40
Q5E9B3331 Geranylgeranyl transferas yes N/A 0.915 0.489 0.483 1e-40
P41992335 Probable geranylgeranyl t yes N/A 0.881 0.465 0.433 1e-30
B0G172339 Probable geranylgeranyl t yes N/A 0.915 0.477 0.423 2e-30
P46960311 Geranylgeranyl transferas yes N/A 0.898 0.511 0.354 2e-24
P20133325 Geranylgeranyl transferas yes N/A 0.937 0.510 0.368 2e-23
O93830341 Geranylgeranyl transferas N/A N/A 0.853 0.442 0.365 5e-20
Q55D51500 Protein farnesyltransfera no N/A 0.683 0.242 0.272 1e-10
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 Back     alignment and function desciption
 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 16/178 (8%)

Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           +GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG  YCC GFL+IT  LH++++D L
Sbjct: 164 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 223

Query: 66  AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
            WWL ER   S   N +P +L     SW+        G      + +R  L S      D
Sbjct: 224 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQD 280

Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQ 172
            E+GG +DRP D+ DPFHTLFG+A L++L      + PV P +CMP  V++R+N+ P+
Sbjct: 281 EETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQRVNVQPE 336
Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 Back     alignment and function description
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 Back     alignment and function description
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 Back     alignment and function description
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 Back     alignment and function description
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 Back     alignment and function description
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 Back     alignment and function description
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
242004790 294 Geranylgeranyl transferase type-2 subuni 0.926 0.557 0.561 1e-45
322799480 332 hypothetical protein SINV_02131 [Solenop 0.949 0.506 0.536 4e-44
307172449 332 Geranylgeranyl transferase type-2 subuni 0.932 0.496 0.527 8e-44
332018919 339 Geranylgeranyl transferase type-2 subuni 0.949 0.495 0.525 2e-43
380018992 334 PREDICTED: LOW QUALITY PROTEIN: geranylg 0.932 0.494 0.516 3e-43
383860088 334 PREDICTED: geranylgeranyl transferase ty 0.920 0.488 0.511 2e-42
328790560 306 PREDICTED: geranylgeranyl transferase ty 0.932 0.539 0.511 6e-42
350421497 311 PREDICTED: geranylgeranyl transferase ty 0.932 0.530 0.505 9e-42
340726881 311 PREDICTED: geranylgeranyl transferase ty 0.932 0.530 0.505 1e-41
193613282 330 PREDICTED: geranylgeranyl transferase ty 0.943 0.506 0.542 3e-41
>gi|242004790|ref|XP_002423260.1| Geranylgeranyl transferase type-2 subunit beta, putative [Pediculus humanus corporis] gi|212506251|gb|EEB10522.1| Geranylgeranyl transferase type-2 subunit beta, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 125/180 (69%), Gaps = 16/180 (8%)

Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           IGKLDAIN++KAVEF+LSC NFDGGFGSRPGSESHAGL YCCVGFLSIT +LH ++AD L
Sbjct: 116 IGKLDAINVNKAVEFVLSCMNFDGGFGSRPGSESHAGLIYCCVGFLSITNNLHLVNADLL 175

Query: 66  AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
            WWL ER  +S   N +P +L     SW+        G      +  + SLV       D
Sbjct: 176 GWWLCERQLNSGGLNGRPEKLPDVCYSWWVLSSLTILGRL---HWIQKESLVKFVLACQD 232

Query: 115 VESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRL 174
            E+GG SDRP D+PDPFHTLFG+AAL++L   +  +  V+PTYCMP+ VI++LNL PQ+L
Sbjct: 233 SENGGFSDRPGDLPDPFHTLFGLAALSLLGEKS--LKQVNPTYCMPQNVIDKLNLKPQKL 290

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322799480|gb|EFZ20788.1| hypothetical protein SINV_02131 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307172449|gb|EFN63902.1| Geranylgeranyl transferase type-2 subunit beta [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332018919|gb|EGI59465.1| Geranylgeranyl transferase type-2 subunit beta [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380018992|ref|XP_003693402.1| PREDICTED: LOW QUALITY PROTEIN: geranylgeranyl transferase type-2 subunit beta-like [Apis florea] Back     alignment and taxonomy information
>gi|383860088|ref|XP_003705523.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328790560|ref|XP_001122542.2| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Apis mellifera] Back     alignment and taxonomy information
>gi|350421497|ref|XP_003492861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340726881|ref|XP_003401780.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|193613282|ref|XP_001944304.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
ZFIN|ZDB-GENE-040426-2116331 rabggtb "Rab geranylgeranyltra 0.892 0.477 0.464 2e-33
MGI|MGI:99537339 Rabggtb "RAB geranylgeranyl tr 0.892 0.466 0.458 4.1e-33
RGD|3530331 Rabggtb "Rab geranylgeranyltra 0.892 0.477 0.458 4.1e-33
UNIPROTKB|F1LSM6331 Rabggtb "Geranylgeranyl transf 0.892 0.477 0.458 5.2e-33
UNIPROTKB|F1M052337 Rabggtb "Geranylgeranyl transf 0.892 0.468 0.458 5.2e-33
UNIPROTKB|G8JKY6331 RABGGTB "Geranylgeranyl transf 0.887 0.474 0.461 6.7e-33
UNIPROTKB|Q5E9B3331 RABGGTB "Geranylgeranyl transf 0.887 0.474 0.461 6.7e-33
UNIPROTKB|F1P6X0331 RABGGTB "Uncharacterized prote 0.887 0.474 0.461 6.7e-33
UNIPROTKB|P53611331 RABGGTB "Geranylgeranyl transf 0.892 0.477 0.452 6.7e-33
UNIPROTKB|F1P4E5343 RABGGTB "Uncharacterized prote 0.892 0.460 0.464 1.8e-32
ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 78/168 (46%), Positives = 96/168 (57%)

Query:     6 IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
             +GKLD IN+ KAVEF++SC NFDGGFG RPGSESHAG  YCC GFLS+TG LH+++AD L
Sbjct:   156 LGKLDVINVDKAVEFVMSCMNFDGGFGCRPGSESHAGQIYCCTGFLSVTGQLHQVNADLL 215

Query:    66 AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEG--DFFSGRFCNRASLVSLDVES 117
              WWL ER   S   N +P +L     SW+        G   +          L   D E+
Sbjct:   216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRIHWIDKAKLRNFILACQDEET 275

Query:   118 GGISDRPLDIPDPFHTLFGVAAXXXXXXXXXXXXXXXXXYCMPRYVIE 165
             GG +DRP D+ DPFHTLFGVA                  +CMP  V++
Sbjct:   276 GGFADRPGDMVDPFHTLFGVAGLSLLGDEQIKPVNPV--FCMPEDVLQ 321
GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA
GO:0018344 "protein geranylgeranylation" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016740 "transferase activity" evidence=IEA
MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M052 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4E5 RABGGTB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 2e-50
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 8e-49
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 3e-38
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 6e-30
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 9e-22
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 5e-21
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 4e-14
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 5e-13
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 2e-07
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 5e-07
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-06
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-05
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 3e-04
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 5e-04
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 6e-04
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 6e-04
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 7e-04
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information 
 Score =  164 bits (416), Expect = 2e-50
 Identities = 80/181 (44%), Positives = 103/181 (56%), Gaps = 28/181 (15%)

Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           + +LD IN+ KAV++I+SC NFDGGFG  PG ESHAG  +CCVG L+ITG LH +D D L
Sbjct: 146 LKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLL 205

Query: 66  AWWLAERGDHSSD-NLQPSQL-----SWYNFV------RAHFEGDFFSGRFCNRASLVSL 113
            WWL ER   S   N +P +L     SW+         R H         + ++  L   
Sbjct: 206 GWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVH---------WIDKDKLAKF 256

Query: 114 -----DVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLN 168
                D E+GGISDRP D  D FHT FGVA L++L    P + P+DP Y +P  V+ R+ 
Sbjct: 257 ILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL--GYPGLKPIDPAYALPVDVVNRIG 314

Query: 169 L 169
           L
Sbjct: 315 L 315

Length = 316
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 177
KOG0366|consensus329 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
KOG0367|consensus347 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
KOG0365|consensus423 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
KOG0366|consensus329 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.97
KOG0365|consensus 423 99.97
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.96
KOG0367|consensus347 99.94
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.73
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.6
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.57
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.56
COG1689 274 Uncharacterized protein conserved in archaea [Func 99.5
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.47
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.32
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.24
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.23
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.22
PLN02993763 lupeol synthase 99.15
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.13
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.09
PLN03012759 Camelliol C synthase 99.09
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 98.79
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 98.69
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 98.62
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.55
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 98.54
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 98.51
COG1689274 Uncharacterized protein conserved in archaea [Func 98.37
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.36
PLN03012759 Camelliol C synthase 98.33
PLN02993763 lupeol synthase 98.31
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.29
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.02
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 97.85
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.7
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 97.08
KOG0497|consensus760 96.88
KOG0497|consensus760 96.84
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 96.5
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 93.57
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 93.13
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 88.9
PF07678246 A2M_comp: A-macroglobulin complement component; In 82.95
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 80.67
>KOG0366|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.1e-48  Score=313.16  Aligned_cols=166  Identities=50%  Similarity=0.950  Sum_probs=161.8

Q ss_pred             cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133          2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL   80 (177)
Q Consensus         2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g   80 (177)
                      .|++|+.++.+++++.|+|+.+|.|.|||||..||.|||.+..||++++|+++++++.+|++.+..||..||.+.| .+|
T Consensus       152 ~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNG  231 (329)
T KOG0366|consen  152 CLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNG  231 (329)
T ss_pred             HHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133         81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV  150 (177)
Q Consensus        81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l  150 (177)
                      ||+|     |+||++++|+|+|+.   +|||+++     ++||+.+.|||++||+.+.|.+||++++|+|+||+.  +++
T Consensus       232 RpeKlpDVCYSwWvlsSL~iigrl---~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~--~~l  306 (329)
T KOG0366|consen  232 RPEKLPDVCYSWWVLSSLAIIGRL---HWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGY--PGL  306 (329)
T ss_pred             CcccCcchhhHHHHHhHHHHhhhh---hhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCC--CCc
Confidence            9998     999999999999999   9999998     789999999999999999999999999999999999  899


Q ss_pred             CcCCccccCCHHHHHHhhcCCC
Q psy18133        151 LPVDPTYCMPRYVIERLNLNPQ  172 (177)
Q Consensus       151 ~~~~p~~~i~~~~~~~~~~~~~  172 (177)
                      ++|||.||+|+++++|+++++.
T Consensus       307 ~~idP~fcmp~~v~~r~~~~~~  328 (329)
T KOG0366|consen  307 KPIDPIFCMPKEVLQRIKVTPY  328 (329)
T ss_pred             eecCCcccCcHHHHhhhccccC
Confidence            9999999999999999998875

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>KOG0367|consensus Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0365|consensus Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>KOG0366|consensus Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0365|consensus Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367|consensus Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0497|consensus Back     alignment and domain information
>KOG0497|consensus Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 3e-34
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 3e-34
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 2e-05
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 2e-05
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 3e-05
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 3e-05
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 3e-05
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 3e-05
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 3e-05
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 3e-05
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 4e-05
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 4e-05
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 4e-05
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 4e-05
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 4e-05
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 4e-05
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 8e-05
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 16/171 (9%)
Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           +GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG  YCC GFL+IT  LH++++D L
Sbjct: 156 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 215
Query: 66  AWWLAERGDHSSD-NLQPSQL-----SWYNFVRAHFEGDFFSGRFCNRASLVSL-----D 114
            WWL ER   S   N +P +L     SW+        G      + +R  L S      D
Sbjct: 216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQD 272
Query: 115 VESGGISDRPLDIPDPFHTLFGVAAXXXXXXXXXXXXXXXXXYCMPRYVIE 165
            E+GG +DRP D+ DPFHTLFG+A                  +CMP  V++
Sbjct: 273 EETGGFADRPGDMVDPFHTLFGIAG--LSLLGEEQIKPVSPVFCMPEEVLQ 321
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 9e-41
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 2e-09
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 9e-05
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 7e-38
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 3e-05
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 6e-36
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 6e-36
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 5e-10
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 2e-09
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 4e-22
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 2e-07
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 1e-05
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
 Score =  139 bits (350), Expect = 9e-41
 Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 10/177 (5%)

Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           +GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG  YCC GFL+IT  LH++++D L
Sbjct: 156 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 215

Query: 66  AWWLAER-GDHSSDNLQPSQLS------WYNFVRAHFEGDFFSGRFCNRAS-LVSLDVES 117
            WWL ER       N +P +L       W            +  R   R+  L   D E+
Sbjct: 216 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEET 275

Query: 118 GGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRL 174
           GG +DRP D+ DPFHTLFG+A L++L      + PV P +CMP  V++R+N+ P+ +
Sbjct: 276 GGFADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVLQRVNVQPELV 330
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.97
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 99.97
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 99.96
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 99.96
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.44
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.35
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.16
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 98.91
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.87
2wy7_A310 Complement C3D fragment; immune system, immune res 98.8
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.11
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.03
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 97.92
2wy7_A310 Complement C3D fragment; immune system, immune res 97.68
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 97.31
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.1
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 96.82
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 96.81
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 96.14
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 95.89
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 95.79
2hr0_B 915 Complement C3 alpha' chain; complement component C 95.15
3prx_B 1642 Cobra venom factor; immune system, complement, imm 95.06
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 94.73
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 94.3
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 89.82
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 89.76
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 88.97
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 85.83
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 85.79
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 85.27
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 85.09
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 81.01
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
Probab=100.00  E-value=1.1e-45  Score=313.93  Aligned_cols=168  Identities=50%  Similarity=0.984  Sum_probs=160.2

Q ss_pred             cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133          2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL   80 (177)
Q Consensus         2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g   80 (177)
                      +|.+|+.++.++++++++||++||++||||++.|+.|||+++||||+++|.+++.++.+|.+++++||.++|+++| |+|
T Consensus       152 ~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~g  231 (331)
T 3dss_B          152 TLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNG  231 (331)
T ss_dssp             HHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCC
Confidence            4678888888999999999999999999999999999999999999999999999989999999999999999999 999


Q ss_pred             CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133         81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV  150 (177)
Q Consensus        81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l  150 (177)
                      |++|     ||||++++|++||+.   +++|.++     ++||+.+.|||+++|+++||.+||||||++|+++++  ++|
T Consensus       232 r~~k~~D~cys~w~l~~L~llg~~---~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~--~~l  306 (331)
T 3dss_B          232 RPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQI  306 (331)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTTCG---GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC--TTS
T ss_pred             CCCCCCcchhHHHHHHHHHHcCCc---chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC--CCC
Confidence            9997     999999999999987   7888876     789998779999999999999999999999999999  889


Q ss_pred             CcCCccccCCHHHHHHhhcCCCCC
Q psy18133        151 LPVDPTYCMPRYVIERLNLNPQRL  174 (177)
Q Consensus       151 ~~~~p~~~i~~~~~~~~~~~~~~~  174 (177)
                      ++|||+||||+++++|+++.++.|
T Consensus       307 ~~~~p~~~~~~~~~~~~~~~~~~~  330 (331)
T 3dss_B          307 KPVSPVFCMPEEVLQRVNVQPELV  330 (331)
T ss_dssp             CCBCTTTSSBHHHHHHHTCCCCCC
T ss_pred             CCCCccccCCHHHHHHhCCChhhc
Confidence            999999999999999999998876
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 177
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 3e-41
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 5e-10
d3dssb1 325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 7e-07
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 4e-37
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-33
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-07
d2h6fb1 401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-06
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 0.003
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (351), Expect = 3e-41
 Identities = 82/177 (46%), Positives = 108/177 (61%), Gaps = 10/177 (5%)

Query: 6   IGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 65
           +GKLDAIN+ KA+EF+LSC NFDGGFG RPGSESHAG  YCC GFL+IT  LH++++D L
Sbjct: 150 LGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLL 209

Query: 66  AWWLAER-----GDHSSDNLQPSQL-SWYNFVRAHFEG--DFFSGRFCNRASLVSLDVES 117
            WWL ER     G +      P    SW+        G   +          L   D E+
Sbjct: 210 GWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEET 269

Query: 118 GGISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPRYVIERLNLNPQRL 174
           GG +DRP D+ DPFHTLFG+A L++L      + PV P +CMP  V++R+N+ P+ +
Sbjct: 270 GGFADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVLQRVNVQPELV 324
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.97
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.32
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.19
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.01
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.7
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.45
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.15
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 97.3
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 97.0
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 96.99
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 94.97
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 90.25
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 89.45
d1c3da_ 294 C3D, a C3 fragment and ligand for complement recep 89.42
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 87.93
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 86.4
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-47  Score=323.18  Aligned_cols=168  Identities=50%  Similarity=0.984  Sum_probs=160.1

Q ss_pred             cccccCCCChhcHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHHhCCCCccCHHHHHHHHHHcCCCCC-Ccc
Q psy18133          2 VQHPIGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERGDHSS-DNL   80 (177)
Q Consensus         2 ~l~lL~~l~~~~~~~~~~~I~scq~~dGGF~~~pg~esh~~~Ty~Al~~L~llg~l~~id~~~l~~~l~~~Q~~~G-F~g   80 (177)
                      ++++|+.++.++.+++++||.+||++||||+..|+.|+|+++||||+++|.+++.++.++.+++++||.+||.++| |+|
T Consensus       146 ~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~G  225 (325)
T d3dssb1         146 TLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNG  225 (325)
T ss_dssp             HHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred             HHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCC
Confidence            4678898899999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCc-----chHHHHHHHhhhCCcccCCccchhh-----hcccCCCCCCccCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy18133         81 QPSQ-----LSWYNFVRAHFEGDFFSGRFCNRAS-----LVSLDVESGGISDRPLDIPDPFHTLFGVAALTMLDPPTPDV  150 (177)
Q Consensus        81 r~~k-----~ty~a~a~l~lL~~~~~~~~~d~~~-----l~cq~~d~GGF~~~p~~~~d~~~T~~alasL~ll~~~~~~l  150 (177)
                      |+||     ||||++++|.+|+..   +++|.++     ++||+.+.|||+++|++.||++||||+|++|+|++.  +++
T Consensus       226 R~~K~~D~cys~W~~~~l~~L~~~---~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~--~~l  300 (325)
T d3dssb1         226 RPEKLPDVCYSWWVLASLKIIGRL---HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE--EQI  300 (325)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTTCG---GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC--TTS
T ss_pred             CCCCCCchHHHHHHHHHHHHcCcc---ccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCC--CCC
Confidence            9998     999999999999987   7889887     689877779999999999999999999999999999  899


Q ss_pred             CcCCccccCCHHHHHHhhcCCCCC
Q psy18133        151 LPVDPTYCMPRYVIERLNLNPQRL  174 (177)
Q Consensus       151 ~~~~p~~~i~~~~~~~~~~~~~~~  174 (177)
                      ++|||+||||+++++|+++-+|.+
T Consensus       301 ~~~~p~~~i~~~~~~~~~~~~~~~  324 (325)
T d3dssb1         301 KPVSPVFCMPEEVLQRVNVQPELV  324 (325)
T ss_dssp             CCBCTTTSSBHHHHHHHTCCCCCC
T ss_pred             CCCCCcccCCHHHHHHhccchhhc
Confidence            999999999999999999988865
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure