Psyllid ID: psy18180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MLDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQHMI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccHHHcccHHHHHHEEccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHccccccEEEEccccHHHHcc
Coil and Loop (DISEMBL)
mldkkvfrDVSLLLVNskmdnedcnsnntltpdsVLCLVCQgilikpiklpcnhhvCLECLQRicdnsnlscpmcRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVdqklfdqddgvweNYHQHISTYLLTAPTYLQHMI
Flexible Loop (DISEMBL)
mldkkvfrDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRIcdnsnlscpMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQHMI
Low Complexity Region (SEG)
MLDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQHMI
Disordered region (IsUnstruct)
******FRDVSLLLVN***********NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYL****
Disordered Region (DISOPRED)
**DKKVFRDVS**********************SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY************************STYLLTAPTYLQH**
Disordered Region (DISEMBL)
MLDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQHMI
Disordered Region (DISPRO)
MLDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQHMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
B2RYR0	564	E3 ubiquitin-protein liga	yes	N/A	0.720	0.182	0.361	3e-15
Q6INS5	557	E3 ubiquitin-protein liga	N/A	N/A	0.573	0.147	0.402	5e-15
B0BLU1	535	E3 ubiquitin-protein liga	yes	N/A	0.573	0.153	0.390	9e-15
Q80XJ2	565	E3 ubiquitin-protein liga	yes	N/A	0.566	0.143	0.407	2e-14
Q7T308	474	E3 ubiquitin-protein liga	yes	N/A	0.650	0.196	0.354	3e-14
Q8IYW5	571	E3 ubiquitin-protein liga	yes	N/A	0.713	0.178	0.346	6e-14
Q0IIM1	573	E3 ubiquitin-protein liga	yes	N/A	0.720	0.179	0.342	4e-13
E7FAP1	630	E3 ubiquitin-protein liga	no	N/A	0.622	0.141	0.344	1e-11
Q8HXH0	718	LON peptidase N-terminal	N/A	N/A	0.657	0.130	0.3	2e-07
Q496Y0	759	LON peptidase N-terminal	no	N/A	0.657	0.123	0.3	2e-07

>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 2/105 (1%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL++P+ LPCNH +C  C Q   + +NL CP CR+R+S W R +   + L++ +
Sbjct: 16  CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75

Query: 97  LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQH 141
           LW  IQK+Y KE   ++  Q+     + +Q +   LL+ P  L+ 
Sbjct: 76  LWEIIQKHYAKECKLRISGQESKEIVDEYQPV--RLLSKPGELRR 118

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1.
Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 36  LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
           +C +CQ IL++P+ LPC H +C  C Q   + ++L CP CRKR+S W R +     L++ 
Sbjct: 15  ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARLHSRTRTLVNT 74

Query: 96  NLWNQIQKYYKKEVDQKLFDQD 117
            LW +IQK Y KE  ++   Q+
Sbjct: 75  ELWERIQKQYPKECQRRASGQE 96

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with ube2n/ubc13 to amplify the rnf8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the rnf8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of tp53bp1 and brca1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%)

Query: 36  LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
           +C +CQ IL++P+ LPC H +C  C Q   + ++L CP CRKR+S W R++     L+++
Sbjct: 15  ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARQHSRTRTLVNK 74

Query: 96  NLWNQIQKYYKKEVDQKLFDQD 117
            LW  IQK Y K+  ++   Q+
Sbjct: 75  ELWEVIQKQYPKQCQRRASGQE 96

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with ube2n/ubc13 to amplify the rnf8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the rnf8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of tp53bp1 and brca1.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2 SV=3

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL++P+ LPCNH +C  C Q   + +NL CP CR+R+S W R +   + L++ +
Sbjct: 16  CGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75

Query: 97  LWNQIQKYYKKEVDQKLFDQD 117
           LW  IQK+Y KE   ++  Q+
Sbjct: 76  LWEIIQKHYAKECKLRISGQE 96

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%)

Query: 26  SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
           S+  L     +C VC  I ++P+ LPC H  C  C     D SN+ CP+CRKR+S W R 
Sbjct: 15  SSGGLKRSDCVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARL 74

Query: 86  NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDD 118
           N     L++  LW +IQ  +  + ++++   DD
Sbjct: 75  NSRNKTLVNMELWRRIQDAFPSQCERRVQGIDD 107

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with ube2n/ubc13 to amplify the rnf8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the rnf8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of tp53bp1 and brca1.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL++P+ LPCNH +C  C Q   + ++L CP CR+R+S W R +   + L++  
Sbjct: 16  CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 75

Query: 97  LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQ 140
           LW  IQK+Y +E   +   Q+     + +Q +   LL+ P  L+
Sbjct: 76  LWTIIQKHYPRECKLRASGQESEEVADDYQPV--RLLSKPGELR 117

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL +P+ LPCNH +C  C +   + ++L CP CR+R+S W R     + L++  
Sbjct: 16  CQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLVNME 75

Query: 97  LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQH 141
           LW  IQK+Y KE   +   Q+     + +Q +   LL+ P  L+ 
Sbjct: 76  LWEIIQKHYPKECKLRASGQESKEIVDDYQPV--RLLSKPGELRR 118

E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 30  LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 89
           L+ +   C VC  IL++P+ +PC H VCL C QR     +L CP+CR R+S W R+    
Sbjct: 29  LSLEEARCPVCSEILLEPVTMPCGHSVCLHCFQRTVKLISLCCPLCRLRVSSWARKQSRE 88

Query: 90  SLLIDENLWNQIQKYYKKEVDQKLFDQDDG 119
             L++  LW  ++  + +   +++ +Q DG
Sbjct: 89  KSLVNAELWELVRLSHPERCKRRM-EQRDG 117

Probable E3 ubiquitin-protein ligase that acts as a negative regulator of double-strand breaks (DSBs) repair following DNA damage.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  +  +P+  PC H  CL+CL+R C + N  CP+C+  LS  L   K    +I E 
Sbjct: 426 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 484

Query: 97  LWNQIQKYYKKEVDQ--KLFDQDDGVWENYHQHISTYLLT 134
           L   I K+  +E+ +  KL++++     N ++++  ++ T
Sbjct: 485 L---IAKFLPEELKERRKLYEEEMEELSNLNKNVPIFVCT 521

Macaca fascicularis (taxid: 9541)

>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  +  +P+  PC H  CL+CL+R C + N  CP+C+  LS  L   K    +I E 
Sbjct: 467 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 525

Query: 97  LWNQIQKYYKKEVDQ--KLFDQDDGVWENYHQHISTYLLT 134
           L   I K+  +E+ +  KL++++     N ++++  ++ T
Sbjct: 526 L---IAKFLPEELKERRKLYEEEMEELSNLNKNVPIFVCT 562

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
326430762	465	hypothetical protein PTSG_01034 [Salping	0.566	0.174	0.433	1e-16
328724837	394	PREDICTED: hypothetical protein LOC10016	0.685	0.248	0.393	2e-16
157117835	730	hypothetical protein AaeL_AAEL001357 [Ae	0.573	0.112	0.414	8e-16
326925712	574	PREDICTED: e3 ubiquitin-protein ligase R	0.643	0.160	0.423	2e-15
395839692	572	PREDICTED: E3 ubiquitin-protein ligase R	0.734	0.183	0.390	2e-15
410926879	218	PREDICTED: E3 ubiquitin-protein ligase R	0.860	0.564	0.341	3e-15
118094925	605	PREDICTED: E3 ubiquitin-protein ligase R	0.643	0.152	0.413	3e-15
405958055	868	hypothetical protein CGI_10012050 [Crass	0.699	0.115	0.33	3e-15
307207595	926	RING finger protein 168 [Harpegnathos sa	0.545	0.084	0.435	1e-14
347965673	706	AGAP001292-PA [Anopheles gambiae str. PE	0.748	0.151	0.348	1e-14

>gi|326430762|gb|EGD76332.1| hypothetical protein PTSG_01034 [Salpingoeca sp. ATCC 50818]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 36  LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
           +C +C G+LI P+ LPC H VC EC +RI + SN+ CPMCR+RL +W R+ K    ++D+
Sbjct: 52  VCFLCMGLLIPPVVLPCTHRVCEECFRRIEELSNMECPMCRRRLHVWCRKLK--GSVVDQ 109

Query: 96  NLWNQIQKYYKKEVDQKLFDQDD 118
            LW ++Q+ Y K+      D  D
Sbjct: 110 TLWEEMQRLYPKQCQAHTKDLGD 132

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|328724837|ref|XP_001947631.2| PREDICTED: hypothetical protein LOC100167466 [Acyrthosiphon pisum]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 30  LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNK-D 88
           L  + V C+ C+ I ++P+ +PC H +CLEC + + D +   CPMCR+R+S WLR+ K D
Sbjct: 10  LNFEEVFCIACRSIYLQPVTMPCGHTLCLECFKSMVDLTAYQCPMCRRRISNWLRKFKHD 69

Query: 89  FSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQH 127
           +  +++  LW  I++ Y  EV ++L D+DDG+ E    H
Sbjct: 70  WDAMLNVKLWEAIKQQYPVEVQKRLNDEDDGLEERIVNH 108

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117835|ref|XP_001653059.1| hypothetical protein AaeL_AAEL001357 [Aedes aegypti] gi|108883323|gb|EAT47548.1| AAEL001357-PA [Aedes aegypti]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query: 30  LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 89
           L  D +LC VCQ +L++P+ LPC H  C  CL    + +NL+CP CRKR   W R     
Sbjct: 46  LQLDDILCTVCQSVLVEPVFLPCQHRFCRNCLSGTIEKNNLNCPCCRKRFGTWYRNASRV 105

Query: 90  SLLIDENLWNQIQKYYKKEVDQ 111
           + L+ E LWN IQ  ++  +D+
Sbjct: 106 NKLVHEQLWNAIQSQFRDYLDE 127

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326925712|ref|XP_003209054.1| PREDICTED: e3 ubiquitin-protein ligase RNF168-like [Meleagris gallopavo]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%)

Query: 26  SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
           S   L+ D  LC +C  I ++P+ LPCNH +C  C Q   +N++L CP CR+R+S W R 
Sbjct: 5   SEAPLSLDDCLCQICMEIFVEPVTLPCNHTICNSCFQLTVENASLCCPFCRRRVSSWARY 64

Query: 86  NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQD 117
           N   + LI+  LW +IQK Y KE ++++  QD
Sbjct: 65  NARRNTLINWELWEKIQKKYPKECERRINGQD 96

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395839692|ref|XP_003792716.1| PREDICTED: E3 ubiquitin-protein ligase RNF168 [Otolemur garnettii]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  ILI+P+ LPCNH +C  C Q   + +NLSCP CR+R+S W R +   + LI+  
Sbjct: 16  CQICMEILIEPVTLPCNHTLCNPCFQSTVEKANLSCPFCRRRVSSWTRYHTRKNTLINME 75

Query: 97  LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQH 141
           LWN IQK+Y +E   +   Q+    E    +   +LL+ P  L+ 
Sbjct: 76  LWNIIQKHYPRECKLRASGQESEEIETVDDYQPVHLLSKPGELRR 120

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410926879|ref|XP_003976896.1| PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Takifugu rubripes]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 62/123 (50%)

Query: 19  MDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKR 78
           M        +TLT     C VC  IL +P+ LPC H  C  C     D + L CP+CRKR
Sbjct: 1   MSGRGGRRESTLTLQDCRCPVCLEILCEPVTLPCTHTFCKGCFLESVDKATLCCPLCRKR 60

Query: 79  LSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTY 138
           +S W R+N   + L+++ LWNQIQ  +     ++L  QD G+ +N    +    ++ P  
Sbjct: 61  VSTWARQNSRNNTLVNQQLWNQIQDQFPLHCQRRLSGQDGGMEDNLGVAVCVPRVSEPGE 120

Query: 139 LQH 141
           L+ 
Sbjct: 121 LRQ 123

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118094925|ref|XP_001233498.1| PREDICTED: E3 ubiquitin-protein ligase RNF168 [Gallus gallus]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%)

Query: 26  SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
           S   L+ D  LC +C  + ++P+ LPCNH +C  C Q   +N++L CP CR+R+S W R 
Sbjct: 5   SEAPLSLDDCLCQICMEVFVEPVTLPCNHTICNSCFQLTVENASLCCPFCRRRVSSWARY 64

Query: 86  NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQD 117
           N   + LI+  LW +IQK Y KE ++++  QD
Sbjct: 65  NARRNTLINWELWEKIQKKYPKECERRINGQD 96

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405958055|gb|EKC24219.1| hypothetical protein CGI_10012050 [Crassostrea gigas]

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 64/100 (64%)

Query: 29  TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 88
           TL+ +  +C +C  I+++P+ +PC H +C  C ++  + ++L+CPMCR R+S+W RR+  
Sbjct: 26  TLSVEDCMCPICMCIMVEPVTMPCKHTLCYPCFKQNVEEASLACPMCRVRISVWARRSSK 85

Query: 89  FSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHI 128
              L+++ LW QIQ+ + ++V+++    DD + E   Q +
Sbjct: 86  NGTLVNKKLWTQIQQLFPEKVEKRQKGLDDSIEEPVFQPV 125

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|307207595|gb|EFN85259.1| RING finger protein 168 [Harpegnathos saltator]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 53/78 (67%)

Query: 35  VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLID 94
           ++C VC+GILI+P+ LPC H++CL CL+   ++++LSCP+CR R+  WLR       L++
Sbjct: 28  LMCPVCRGILIEPVTLPCTHNLCLRCLKGTFEHNSLSCPLCRLRVGSWLRTATKSETLVN 87

Query: 95  ENLWNQIQKYYKKEVDQK 112
             LW  I+  + KEV+ K
Sbjct: 88  HGLWEFIRTKFPKEVEDK 105

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965673|ref|XP_321855.5| AGAP001292-PA [Anopheles gambiae str. PEST] gi|333470402|gb|EAA01307.5| AGAP001292-PA [Anopheles gambiae str. PEST]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 28  NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNK 87
           + L  D +LC VCQ +LI+P+ LPC H  C  C++   + + L CP CRKR   W R   
Sbjct: 43  DNLRLDDILCAVCQSVLIEPVFLPCQHLFCRSCIRETIETNKLCCPCCRKRFGTWYRNAS 102

Query: 88  DFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAP 136
             + L+ E LW  IQ  +++ +D+   +   G  +    H +  L TAP
Sbjct: 103 RANELVHEQLWRAIQSQFREHLDED--NPSAGSSKRSATHQTKPLYTAP 149

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|E1BSL1	572	E1BSL1 "Uncharacterized protei	0.713	0.178	0.394	6.6e-18
UNIPROTKB|Q6INS5	557	rnf168 "E3 ubiquitin-protein l	0.573	0.147	0.402	2.5e-15
RGD|1585168	564	Rnf168 "ring finger protein 16	0.713	0.180	0.365	2.5e-15
UNIPROTKB|F1M8E0	565	Rnf168 "E3 ubiquitin-protein l	0.713	0.180	0.365	2.5e-15
UNIPROTKB|B0BLU1	535	rnf168 "E3 ubiquitin-protein l	0.573	0.153	0.390	2.9e-15
MGI|MGI:1917488	565	Rnf168 "ring finger protein 16	0.566	0.143	0.407	5.3e-15
UNIPROTKB|F8WD60	116	RNF168 "E3 ubiquitin-protein l	0.566	0.698	0.382	8.8e-15
UNIPROTKB|G3X8D4	190	RNF168 "E3 ubiquitin-protein l	0.713	0.536	0.346	1.1e-14
RGD|1560267	197	RGD1560267 "similar to ring fi	0.552	0.401	0.392	3.8e-14
UNIPROTKB|E2R9S2	570	RNF168 "Uncharacterized protei	0.706	0.177	0.361	4e-14

UNIPROTKB|E1BSL1 E1BSL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query:    26 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
             S   L+ D  LC +C  + ++P+ LPCNH +C  C Q   +N++L CP CR+R+S W R 
Sbjct:     5 SEAPLSLDDCLCQICMEVFVEPVTLPCNHTICNSCFQLTVENASLCCPFCRRRVSSWARY 64

Query:    86 NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQD--DGVWENYHQH 127
             N   + LI+  LW +IQK Y KE ++++  QD  + V+  + QH
Sbjct:    65 NARRNTLINWELWEKIQKKYPKECERRINGQDLEELVFVPHPQH 108

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0031491 "nucleosome binding" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0035861 "site of double-strand break" evidence=IEA

GO:0036351 "histone H2A-K13 ubiquitination" evidence=IEA

GO:0036352 "histone H2A-K15 ubiquitination" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=IEA

UNIPROTKB|Q6INS5 rnf168 "E3 ubiquitin-protein ligase RNF168" [Xenopus laevis (taxid:8355)]

 Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:    36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
             +C +CQ IL++P+ LPC H +C  C Q   + ++L CP CRKR+S W R +     L++ 
Sbjct:    15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARLHSRTRTLVNT 74

Query:    96 NLWNQIQKYYKKEVDQKLFDQD 117
              LW +IQK Y KE  ++   Q+
Sbjct:    75 ELWERIQKQYPKECQRRASGQE 96

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0035518 "histone H2A monoubiquitination" evidence=ISS

GO:0035861 "site of double-strand break" evidence=ISS

GO:0036351 "histone H2A-K13 ubiquitination" evidence=ISS

GO:0036352 "histone H2A-K15 ubiquitination" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045190 "isotype switching" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0045900 "negative regulation of translational elongation" evidence=ISS

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=ISS

RGD|1585168 Rnf168 "ring finger protein 168, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL++P+ LPCNH +C  C Q   + +NL CP CR+R+S W R +   + L++ +
Sbjct:    16 CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75

Query:    97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQ 140
             LW  IQK+Y KE   ++  Q+     + +Q +   LL+ P  L+
Sbjct:    76 LWEIIQKHYAKECKLRISGQESKEIVDEYQPVR--LLSKPGELR 117

GO:0000151 "ubiquitin ligase complex" evidence=ISO;ISS

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006302 "double-strand break repair" evidence=ISO;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=ISO;ISS

GO:0016567 "protein ubiquitination" evidence=ISO;ISS

GO:0031491 "nucleosome binding" evidence=IEA;ISO

GO:0035518 "histone H2A monoubiquitination" evidence=ISO;ISS

GO:0035861 "site of double-strand break" evidence=ISO;ISS

GO:0036351 "histone H2A-K13 ubiquitination" evidence=ISO;ISS

GO:0036352 "histone H2A-K15 ubiquitination" evidence=ISO;ISS

GO:0042393 "histone binding" evidence=ISO;ISS

GO:0043130 "ubiquitin binding" evidence=ISO;ISS

GO:0045190 "isotype switching" evidence=ISO;ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISO;ISS

GO:0045900 "negative regulation of translational elongation" evidence=ISO;ISS

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISO;ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO;ISS

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=ISO;ISS

UNIPROTKB|F1M8E0 Rnf168 "E3 ubiquitin-protein ligase RNF168" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 38/104 (36%), Positives = 61/104 (58%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL++P+ LPCNH +C  C Q   + +NL CP CR+R+S W R +   + L++ +
Sbjct:    18 CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 77

Query:    97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQ 140
             LW  IQK+Y KE   ++  Q+     + +Q +   LL+ P  L+
Sbjct:    78 LWEIIQKHYAKECKLRISGQESKEIVDEYQPVR--LLSKPGELR 119

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B0BLU1 rnf168 "E3 ubiquitin-protein ligase RNF168" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 201 (75.8 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 32/82 (39%), Positives = 51/82 (62%)

Query:    36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
             +C +CQ IL++P+ LPC H +C  C Q   + ++L CP CRKR+S W R++     L+++
Sbjct:    15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARQHSRTRTLVNK 74

Query:    96 NLWNQIQKYYKKEVDQKLFDQD 117
              LW  IQK Y K+  ++   Q+
Sbjct:    75 ELWEVIQKQYPKQCQRRASGQE 96

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0010212 "response to ionizing radiation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0035518 "histone H2A monoubiquitination" evidence=ISS

GO:0035861 "site of double-strand break" evidence=ISS

GO:0036351 "histone H2A-K13 ubiquitination" evidence=ISS

GO:0036352 "histone H2A-K15 ubiquitination" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045190 "isotype switching" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0045900 "negative regulation of translational elongation" evidence=ISS

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=ISS

MGI|MGI:1917488 Rnf168 "ring finger protein 168" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL++P+ LPCNH +C  C Q   + +NL CP CR+R+S W R +   + L++ +
Sbjct:    16 CGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75

Query:    97 LWNQIQKYYKKEVDQKLFDQD 117
             LW  IQK+Y KE   ++  Q+
Sbjct:    76 LWEIIQKHYAKECKLRISGQE 96

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0031491 "nucleosome binding" evidence=ISO

GO:0035518 "histone H2A monoubiquitination" evidence=ISO

GO:0035861 "site of double-strand break" evidence=ISO

GO:0036351 "histone H2A-K13 ubiquitination" evidence=ISO

GO:0036352 "histone H2A-K15 ubiquitination" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0045190 "isotype switching" evidence=IMP

GO:0045739 "positive regulation of DNA repair" evidence=ISO

GO:0045900 "negative regulation of translational elongation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=ISO

UNIPROTKB|F8WD60 RNF168 "E3 ubiquitin-protein ligase RNF168" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 31/81 (38%), Positives = 49/81 (60%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL++P+ LPCNH +C  C Q   + ++L CP CR+R+S W R +   + L++  
Sbjct:    16 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 75

Query:    97 LWNQIQKYYKKEVDQKLFDQD 117
             LW  IQK+Y +E   +   Q+
Sbjct:    76 LWTIIQKHYPRECKLRASGQE 96

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3X8D4 RNF168 "E3 ubiquitin-protein ligase RNF168" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/104 (34%), Positives = 57/104 (54%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL +P+ LPCNH +C  C +   + ++L CP CR+R+S W R     + L++  
Sbjct:    16 CQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLVNME 75

Query:    97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQ 140
             LW  IQK+Y KE   +   Q+     + +Q +   LL+ P  L+
Sbjct:    76 LWEIIQKHYPKECKLRASGQESKEIVDDYQPVR--LLSKPGELR 117

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1560267 RGD1560267 "similar to ring finger protein 168" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query:    30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 89
             L+ +   CL+C   LI+PI +PCNH +C  C + +   +NL CP CR  +S W R +   
Sbjct:    11 LSLEDCQCLLCMEFLIEPITMPCNHTMCKSCFKALLRKTNLFCPFCRSWISSWARYHTHV 70

Query:    90 SLLIDENLWNQIQKYYKKE 108
             + LI++ LW +IQ  Y +E
Sbjct:    71 NSLINKELWERIQTQYPEE 89

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R9S2 RNF168 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 38/105 (36%), Positives = 62/105 (59%)

Query:    37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
             C +C  IL++PI LPC H +C  C Q   + ++L CP CR+R+S W R +   + L++  
Sbjct:    16 CRICVDILVEPITLPCGHTLCSPCFQATVEKASLCCPFCRRRVSSWTRYHTRRNSLVNAE 75

Query:    97 LWNQIQKYYKKEVDQKLFDQD-DGVWENYHQHISTYLLTAPTYLQ 140
             LW  IQK+Y +E  ++   Q+ + V ++Y Q +   LL+ P  L+
Sbjct:    76 LWAVIQKHYARECKRRASGQEPEDVVDDY-QPVR--LLSKPGELR 117

GO:0070535 "histone H2A K63-linked ubiquitination" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0036352 "histone H2A-K15 ubiquitination" evidence=IEA

GO:0036351 "histone H2A-K13 ubiquitination" evidence=IEA

GO:0035861 "site of double-strand break" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0031491 "nucleosome binding" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-05
smart00184	40	smart00184, RING, Ring finger	2e-05
COG5222	427	COG5222, COG5222, Uncharacterized conserved protei	2e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-05
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.001
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.003
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.004

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 43.6 bits (103), Expect = 4e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 37 CLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRL 79
          C +C     +P+ L PC H  C  C+ +   +   +CP+CR  +
Sbjct: 2  CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRK 77
          + + C +C  +L  P+ L PC H  C EC+ R     +  CP+CR 
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKS-KCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 37 CLVCQGILIK-PIKLPCNHHVCLECLQRICDNSNLSCPMC 75
          C +C    +K P+ LPC H  C  C+++  ++ N +CP+C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 34  SVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKR 78
           S+ C +C  +L  P+K P C H  C EC+     +S+  CP C ++
Sbjct: 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319

Length = 427

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 37 CLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKR 78
          C +C        + + LPC H    ECL +   +SN +CP+CR  
Sbjct: 3  CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN-TCPLCRAP 46

Length = 46

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCR 76
          S+ C +C+     P+   C+H  C  C++R C ++   CP+CR
Sbjct: 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRR-CLSNQPKCPLCR 67

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRK 77
          +  LC++C       + LPC H   C EC +R+       CP+CR+
Sbjct: 1  EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKK--CPICRQ 44

Length = 49

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 37 CLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMC 75
          C +C      P+  LPC H  C +C+    ++ N++CP+C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.6
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.53
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.5
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.5
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.41
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.41
KOG0287|consensus	442		99.34
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.33
KOG0823|consensus	230		99.33
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.33
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.3
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.28
KOG0320|consensus	187		99.26
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.23
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.21
PHA02929	238	N1R/p28-like protein; Provisional	99.21
KOG0317|consensus	293		99.19
PF14634	44	zf-RING_5: zinc-RING finger domain	99.16
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.14
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	99.14
PHA02926	242	zinc finger-like protein; Provisional	99.06
KOG2177|consensus	386		99.04
KOG2660|consensus	331		99.02
KOG0311|consensus	381		99.01
KOG4159|consensus	398		98.97
KOG2164|consensus	513		98.91
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.87
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.86
KOG4628|consensus	348		98.72
KOG0978|consensus	698		98.65
COG5152	259	Uncharacterized conserved protein, contains RING a	98.64
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.62
KOG2879|consensus	298		98.62
KOG0802|consensus	543		98.59
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.56
KOG0824|consensus	324		98.55
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.48
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.46
KOG1813|consensus	313		98.38
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.36
KOG0297|consensus	391		98.22
KOG4172|consensus	62		98.2
KOG1002|consensus	791		98.14
KOG4265|consensus	349		98.02
KOG0804|consensus	493		97.99
KOG1039|consensus	344		97.9
KOG1785|consensus	563		97.89
KOG4692|consensus	489		97.82
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.82
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.82
KOG4367|consensus	699		97.81
KOG4185|consensus	296		97.77
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.77
KOG1734|consensus	328		97.71
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.67
KOG4275|consensus	350		97.57
KOG1493|consensus	84		97.56
KOG0827|consensus	465		97.53
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.45
KOG0828|consensus	636		97.43
KOG1941|consensus	518		97.4
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.32
KOG0825|consensus	1134		97.22
KOG2930|consensus	114		97.18
KOG1645|consensus	463		97.16
KOG3800|consensus	300		97.15
KOG3039|consensus	303		97.1
KOG4739|consensus	233		97.06
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.04
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.92
KOG1001|consensus	674		96.87
KOG1571|consensus	355		96.84
KOG1814|consensus	445		96.73
KOG2817|consensus	394		96.67
KOG2114|consensus	933		96.6
KOG1940|consensus	276		96.54
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.51
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	96.5
PF04641	260	Rtf2: Rtf2 RING-finger	96.46
KOG3970|consensus	299		96.37
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	96.2
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	96.17
KOG3161|consensus	861		96.14
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.83
KOG1952|consensus	950		95.73
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.69
KOG4362|consensus	684		95.48
KOG0826|consensus	357		95.23
KOG3002|consensus	299		95.22
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	95.16
KOG1812|consensus	384		94.79
PHA03096	284	p28-like protein; Provisional	94.71
PHA02862	156	5L protein; Provisional	94.51
KOG1428|consensus	3738		94.5
KOG4445|consensus	368		94.41
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	94.28
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.2
KOG0298|consensus	1394		93.88
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	93.61
KOG1815|consensus	444		93.33
KOG2932|consensus	389		93.21
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.0
COG5109	396	Uncharacterized conserved protein, contains RING Z	92.66
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	91.96
KOG3268|consensus	234		91.89
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.75
KOG3579|consensus	352		91.17
KOG1100|consensus	207		91.0
KOG4185|consensus	296		90.21
KOG3899|consensus	381		89.78
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	89.42
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	89.32
KOG3039|consensus	303		89.28
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.85
KOG2034|consensus	911		87.3
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	87.23
KOG4718|consensus	235		86.89
PLN02189	1040	cellulose synthase	85.35
PF10497	105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	85.32
PLN02436	1094	cellulose synthase A	85.24
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	85.16
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	84.06
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	83.73
PRK04023	1121	DNA polymerase II large subunit; Validated	82.94
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	82.18
KOG0309|consensus	1081		82.08
PLN02915	1044	cellulose synthase A [UDP-forming], catalytic subu	82.03
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	81.57
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	81.32
PF06844	68	DUF1244: Protein of unknown function (DUF1244); In	81.09
PLN02400	1085	cellulose synthase	80.95
PRK03564	309	formate dehydrogenase accessory protein FdhE; Prov	80.82
KOG3053|consensus	293		80.74
PLN02195	977	cellulose synthase A	80.6
KOG3113|consensus	293		80.57
KOG0825|consensus	1134		80.38

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.60  E-value=4.9e-16  Score=85.42  Aligned_cols=39  Identities=38%  Similarity=1.143  Sum_probs=31.0

Q ss_pred             cccccccccCcEEccCCChhHHHHHHHHhhcC---CCccccc
Q psy18180         37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNS---NLSCPMC   75 (143)
Q Consensus        37 C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~---~~~CP~C   75 (143)
                      ||||+++|.+|++++|||+||..||.+|++..   ...||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999999843   2569987

>smart00504 Ubox Modified RING finger domain

Probab=99.53  E-value=1.1e-14  Score=86.82  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      ++.|+||++.+.+|+.++|||+||+.||.+|+..+ ..||.|+..+.       ..++..|..+.+.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~-~~cP~~~~~~~-------~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH-GTDPVTGQPLT-------HEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC-CCCCCCcCCCC-------hhhceeCHHHHHHHHh
Confidence            47899999999999999999999999999999874 46999999886       3456667777777664

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.50  E-value=2.6e-14  Score=101.73  Aligned_cols=52  Identities=21%  Similarity=0.577  Sum_probs=44.6

Q ss_pred             CCCCccccccccccccCcEEccCCChhHHHHHHHHhhc---------------CCCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN---------------SNLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~---------------~~~~CP~Cr~~~~~   81 (143)
                      ...+++.|+||++.+.+|++++|||.||..||.+|+..               +...||.||..+..
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            34468999999999999999999999999999999752               23579999999874

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.50  E-value=1.6e-14  Score=88.70  Aligned_cols=68  Identities=22%  Similarity=0.430  Sum_probs=55.6

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      +.|.|||+.++|.+||++++||+|++.+|.+|+..++..||.|+..+.       ...+..|..|+..|+.|..+
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-------~~~l~pn~~Lk~~I~~~~~~   70 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS-------ESDLIPNRALKSAIEEWCAE   70 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-------GGGSEE-HHHHHHHHHHHHH
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-------cccceECHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999986677999999887       34778899999999998764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.41  E-value=2.2e-13  Score=106.99  Aligned_cols=69  Identities=22%  Similarity=0.495  Sum_probs=55.7

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY  105 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  105 (143)
                      ...+..+.|+||.++|.+|++++|||+||..||..|+.... .||.|+..+..       ..+..|..|.++++.|.
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~-------~~Lr~N~~L~~iVe~~~   89 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQE-------SKLRSNWLVSEIVESFK   89 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC-CCCCCCCcccc-------ccCccchHHHHHHHHHH
Confidence            44567899999999999999999999999999999998654 69999998863       24555666666666553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.41  E-value=1.2e-13  Score=74.78  Aligned_cols=38  Identities=37%  Similarity=1.065  Sum_probs=32.8

Q ss_pred             cccccccccCc-EEccCCChhHHHHHHHHhhcCCCccccc
Q psy18180         37 CLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMC   75 (143)
Q Consensus        37 C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~C   75 (143)
                      |+||.+.+.+| +.++|||+||..|+.+|+.. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 56799999999999999988 5679987

>KOG0287|consensus

Probab=99.34  E-value=6.6e-13  Score=100.93  Aligned_cols=65  Identities=22%  Similarity=0.527  Sum_probs=53.2

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      .+-++|.||.++|..|+++||||+||.-||..++.... .||.|+..+.       ...+.-|..|.++++.+
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p-~CP~C~~~~~-------Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKP-QCPTCCVTVT-------ESDLRNNRILDEIVKSL   85 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCC-CCCceecccc-------hhhhhhhhHHHHHHHHH
Confidence            45679999999999999999999999999999998655 4999999887       34555566666666555

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.33  E-value=7.6e-13  Score=72.25  Aligned_cols=39  Identities=33%  Similarity=1.069  Sum_probs=36.1

Q ss_pred             cccccccccCcE-EccCCChhHHHHHHHHhh-cCCCccccc
Q psy18180         37 CLVCQGILIKPI-KLPCNHHVCLECLQRICD-NSNLSCPMC   75 (143)
Q Consensus        37 C~IC~~~~~~pv-~l~CgH~fC~~Ci~~~~~-~~~~~CP~C   75 (143)
                      |+||.+.+.+|+ +++|||+||..|+.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 789999999999999999 667789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0823|consensus

Probab=99.33  E-value=5.9e-13  Score=96.51  Aligned_cols=51  Identities=25%  Similarity=0.654  Sum_probs=45.3

Q ss_pred             CCCccccccccccccCcEEccCCChhHHHHHHHHhh--cCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD--NSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~   81 (143)
                      ....|.|.||++..++||++.|||.||-.||++|+.  .+...||+|+..++.
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            455899999999999999999999999999999998  345669999998874

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.33  E-value=7.8e-13  Score=75.35  Aligned_cols=47  Identities=30%  Similarity=0.781  Sum_probs=39.9

Q ss_pred             CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++..|.||++...+++.+||||. ||..|+.+|+.. ...||.||+.+.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            36789999999999999999999 999999999984 456999999875

...

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.30  E-value=5.3e-13  Score=78.42  Aligned_cols=58  Identities=28%  Similarity=0.630  Sum_probs=32.6

Q ss_pred             ccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHH
Q psy18180         34 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQI  101 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i  101 (143)
                      -+.|++|.+++.+|+.+ .|.|.||+.|+...+..   .||+|..+..       ..++.+|..|.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw-------~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAW-------IQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S--------SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHH-------HHHHHhhhhhhccC
Confidence            68999999999999976 89999999999876542   4999999876       45889999988765

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.28  E-value=1.1e-12  Score=72.73  Aligned_cols=40  Identities=38%  Similarity=0.872  Sum_probs=33.9

Q ss_pred             cccccccccc---CcEEccCCChhHHHHHHHHhhcCCCcccccc
Q psy18180         36 LCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCR   76 (143)
Q Consensus        36 ~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr   76 (143)
                      .|+||++.+.   .++.++|||.||..||.+|+..+. .||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence            6999999885   556779999999999999998754 699997

...

>KOG0320|consensus

Probab=99.26  E-value=4.7e-12  Score=88.46  Aligned_cols=49  Identities=29%  Similarity=0.790  Sum_probs=42.2

Q ss_pred             CCcccccccccccc--CcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILI--KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~--~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +..+.||||++.+.  .|+.+.|||.||..||+..++.+.. ||+|++.++.
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~  179 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITH  179 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCC-CCCcccccch
Confidence            44689999999998  4566899999999999999987765 9999998874

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.23  E-value=3.7e-12  Score=70.04  Aligned_cols=36  Identities=39%  Similarity=1.125  Sum_probs=23.0

Q ss_pred             cccccccccC----cEEccCCChhHHHHHHHHhhcC---CCccc
Q psy18180         37 CLVCQGILIK----PIKLPCNHHVCLECLQRICDNS---NLSCP   73 (143)
Q Consensus        37 C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~---~~~CP   73 (143)
                      ||||.+ +.+    |+.|+|||+||..|+.+++.++   .+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 887    9999999999999999999843   56676

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.21  E-value=1.1e-11  Score=68.09  Aligned_cols=43  Identities=28%  Similarity=0.821  Sum_probs=37.5

Q ss_pred             ccccccccccCcEEcc-CCChhHHHHHHHHhhcCCCcccccccc
Q psy18180         36 LCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKR   78 (143)
Q Consensus        36 ~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~   78 (143)
                      .|+||.+.+.+++.++ |||.||..|+..|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4899999998887775 999999999999998756679999875

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.21  E-value=1e-11  Score=91.73  Aligned_cols=48  Identities=29%  Similarity=0.724  Sum_probs=39.9

Q ss_pred             CccccccccccccCc--------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKP--------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p--------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ++..|+||++.+.++        +.++|||.||..||.+|+.... +||+||..+..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEeeE
Confidence            468999999987653        4458999999999999998654 69999998873

>KOG0317|consensus

Probab=99.19  E-value=1.5e-11  Score=91.75  Aligned_cols=54  Identities=24%  Similarity=0.725  Sum_probs=47.0

Q ss_pred             CCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         27 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        27 ~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..+..+....|.+|++...+|..+||||.||-.||..|..... .||.||..+..
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~p  285 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQP  285 (293)
T ss_pred             CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCC
Confidence            4455667799999999999999999999999999999997544 59999998873

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.16  E-value=3.5e-11  Score=66.71  Aligned_cols=41  Identities=32%  Similarity=0.877  Sum_probs=34.6

Q ss_pred             ccccccccc---cCcEEccCCChhHHHHHHHHhhcCCCccccccc
Q psy18180         36 LCLVCQGIL---IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK   77 (143)
Q Consensus        36 ~C~IC~~~~---~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~   77 (143)
                      .|+||++.+   ..|..++|||+||..|+..+. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999999   256788999999999999988 44567999985

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.14  E-value=2.7e-11  Score=90.59  Aligned_cols=47  Identities=26%  Similarity=0.731  Sum_probs=42.9

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-+.|.||.+.+..|+.++|||+||.-||.+++....+ ||.||....
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~-CP~Cr~~~~   70 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF-CPVCREDPC   70 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCC-CccccccHH
Confidence            46799999999999999999999999999999987665 999999876

>smart00184 RING Ring finger

Probab=99.14  E-value=5.5e-11  Score=63.16  Aligned_cols=39  Identities=36%  Similarity=1.036  Sum_probs=35.1

Q ss_pred             cccccccccCcEEccCCChhHHHHHHHHhhcCCCccccc
Q psy18180         37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMC   75 (143)
Q Consensus        37 C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~C   75 (143)
                      |+||.+....++.++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999988999999999999999999998555679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02926 zinc finger-like protein; Provisional

Probab=99.06  E-value=2.2e-10  Score=82.91  Aligned_cols=49  Identities=24%  Similarity=0.663  Sum_probs=38.6

Q ss_pred             CccccccccccccC---------cEEccCCChhHHHHHHHHhhcC-----CCcccccccccch
Q psy18180         33 DSVLCLVCQGILIK---------PIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~---------pv~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~   81 (143)
                      ++..|+||++...+         ++..+|+|.||..||..|....     ...||.||..+..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            47899999987643         2344899999999999999732     2459999998763

>KOG2177|consensus

Probab=99.04  E-value=1.6e-10  Score=86.83  Aligned_cols=64  Identities=33%  Similarity=0.725  Sum_probs=50.6

Q ss_pred             CCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      ..+.+.|+||++.|.+|++++|||+||..|+..++. ....||.||. ...        ....|..+.+++..+
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--------~~~~n~~l~~~~~~~   73 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--------NLRPNVLLANLVERL   73 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh--------ccCccHHHHHHHHHH
Confidence            456899999999999998889999999999999998 6678999995 321        333555565555555

>KOG2660|consensus

Probab=99.02  E-value=1.5e-10  Score=87.90  Aligned_cols=73  Identities=22%  Similarity=0.489  Sum_probs=62.4

Q ss_pred             CccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHH
Q psy18180         33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEV  109 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  109 (143)
                      ....|.+|.++|.++.++ .|-|+||++||.+++... ..||.|...+..   .+...++..+..|+.++.+++|.-.
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~-~~CP~C~i~ih~---t~pl~ni~~DrtlqdiVyKLVPgl~   87 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES-KYCPTCDIVIHK---THPLLNIRSDRTLQDIVYKLVPGLQ   87 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh-ccCCccceeccC---ccccccCCcchHHHHHHHHHcchHH
Confidence            367999999999999987 699999999999999874 469999998874   3445688899999999999998643

>KOG0311|consensus

Probab=99.01  E-value=5.4e-11  Score=90.98  Aligned_cols=51  Identities=31%  Similarity=0.773  Sum_probs=46.1

Q ss_pred             CCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ...+++|+||+++++...++ .|+|.||..||...+..++..||.||+.+.+
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            34588999999999998888 5999999999999999888889999999886

>KOG4159|consensus

Probab=98.97  E-value=4.2e-10  Score=88.70  Aligned_cols=106  Identities=25%  Similarity=0.451  Sum_probs=70.0

Q ss_pred             CCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHHh
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVD  110 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  110 (143)
                      ...+|.|.||...+..|+++||||+||..||.+.++.. ..||.||..+.....  ......+++.+..++..+++....
T Consensus        81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~--~~~~~~~~r~~~~li~~F~~~~~~  157 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPA--LEQALSLNRLLCKLITKFLEGSSS  157 (398)
T ss_pred             ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchH--HHHHHHHHHHHHHHHHHhhhhhhc
Confidence            36799999999999999999999999999999977754 469999999874211  011112466666777777766544


Q ss_pred             hhhcCCc--hhHHh--hhccccc-cccccCCccc
Q psy18180        111 QKLFDQD--DGVWE--NYHQHIS-TYLLTAPTYL  139 (143)
Q Consensus       111 ~~~~~~e--~~~~~--~~~~~i~-~~~~s~p~~~  139 (143)
                      .+....+  ..+.+  +...|++ +..+++|+..
T Consensus       158 ~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~  191 (398)
T KOG4159|consen  158 FSPKASEKSKEEESSRECESPLFPVCTLAFPEVP  191 (398)
T ss_pred             cchhhhhhhccccccccccCCccccccccccccc
Confidence            2222111  11111  2234666 6677777654

>KOG2164|consensus

Probab=98.91  E-value=5.4e-10  Score=89.15  Aligned_cols=48  Identities=27%  Similarity=0.744  Sum_probs=43.0

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcC----CCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS----NLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~   81 (143)
                      +..||||++...-|+.+.|||.||..||-++|..+    -..||+|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            88999999999999999999999999999998743    3569999998875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.88  E-value=1.5e-09  Score=66.50  Aligned_cols=40  Identities=35%  Similarity=0.916  Sum_probs=31.8

Q ss_pred             ccccccccccC------------cEE-ccCCChhHHHHHHHHhhcCCCcccccc
Q psy18180         36 LCLVCQGILIK------------PIK-LPCNHHVCLECLQRICDNSNLSCPMCR   76 (143)
Q Consensus        36 ~C~IC~~~~~~------------pv~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr   76 (143)
                      .|.||++.|.+            ++. .+|||.|+..||.+|+..+. .||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            49999998832            333 37999999999999998766 699997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.87  E-value=2.9e-09  Score=81.05  Aligned_cols=49  Identities=27%  Similarity=0.603  Sum_probs=39.0

Q ss_pred             Ccccccccccc-ccCcE---Ec-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGI-LIKPI---KL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~-~~~pv---~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ++..||+|... +.+|.   .+ +|||.||..|+..+|..+...||.|+..+..
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            35789999973 44553   22 6999999999999887777789999998874

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.4e-09  Score=80.48  Aligned_cols=49  Identities=29%  Similarity=0.644  Sum_probs=43.0

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHH-HhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQR-ICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~-~~~~~~~~CP~Cr~~~~   80 (143)
                      +.++.|.||.+....|..++|||.||..||-. |-....-.||.||+...
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56899999999999999999999999999999 65554445999999876

>KOG4628|consensus

Probab=98.72  E-value=4.8e-09  Score=81.06  Aligned_cols=47  Identities=23%  Similarity=0.636  Sum_probs=40.6

Q ss_pred             cccccccccccCc---EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         35 VLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        35 ~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..|.||++.|..-   ..|||+|.|+..||..|+......||+|++.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            5999999999832   4579999999999999999776679999998764

>KOG0978|consensus

Probab=98.65  E-value=1.3e-08  Score=84.71  Aligned_cols=48  Identities=25%  Similarity=0.643  Sum_probs=43.6

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-+.||+|..-+.+.+++.|||.||..|+...+......||.|...|.
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG  689 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            467999999999999999999999999999999865667999999987

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.64  E-value=2.9e-08  Score=70.80  Aligned_cols=61  Identities=21%  Similarity=0.476  Sum_probs=48.4

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHH
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQI  101 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i  101 (143)
                      .-.|.|.||...|..||.+.|||.||..|..+-...+. .|-+|.+.+..        ...+...++.++
T Consensus       194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t~G--------~f~V~~d~~kmL  254 (259)
T COG5152         194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD-ECGVCGKATYG--------RFWVVSDLQKML  254 (259)
T ss_pred             CCceeehhchhhccchhhhhcchhHHHHHHHHHhccCC-cceecchhhcc--------ceeHHhhHHHHH
Confidence            34679999999999999999999999999988777654 59999988764        444555555544

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.62  E-value=4e-08  Score=61.29  Aligned_cols=47  Identities=26%  Similarity=0.656  Sum_probs=37.0

Q ss_pred             cccccccccccc------------CcEEc-cCCChhHHHHHHHHhhc--CCCcccccccccc
Q psy18180         34 SVLCLVCQGILI------------KPIKL-PCNHHVCLECLQRICDN--SNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~------------~pv~l-~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~   80 (143)
                      +-.|.||+..|.            -|+.+ .|+|.|+..||.+|+..  +...||+||+...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            567888887665            14444 79999999999999984  3457999999875

>KOG2879|consensus

Probab=98.62  E-value=5.5e-08  Score=72.42  Aligned_cols=74  Identities=22%  Similarity=0.514  Sum_probs=55.9

Q ss_pred             HHHHHHHhhccccc-ccccCCCCCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180          7 FRDVSLLLVNSKMD-NEDCNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      |+.++..+..-..+ .+..+.+++....+.+|++|.+....|.+. +|||.||..|+..... ...+.||.|.....
T Consensus       211 ~~k~r~~l~sw~~~l~~ap~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  211 FRKLRRVLKSWKLDLDRAPKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             HHHHHHHHHhhcccccCCCCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            45555544443333 223445677788899999999999999987 5999999999998765 44678999988876

>KOG0802|consensus

Probab=98.59  E-value=2.7e-08  Score=81.95  Aligned_cols=49  Identities=33%  Similarity=0.762  Sum_probs=42.4

Q ss_pred             CCCccccccccccccC-----cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGILIK-----PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~-----pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...+..|+||.+.+..     |..++|||.||..|+..|++..+ +||.||..+.
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~~  341 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVLY  341 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-cCCcchhhhh
Confidence            3447899999999998     78999999999999999999865 4999999443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.56  E-value=2.3e-07  Score=70.14  Aligned_cols=44  Identities=32%  Similarity=0.859  Sum_probs=40.5

Q ss_pred             cccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccc
Q psy18180         35 VLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKR   78 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~   78 (143)
                      +.|+.|..++.+|+.+ -|||+||..||...+....+.||.|...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk  319 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK  319 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence            8999999999999999 5999999999999888778889999774

>KOG0824|consensus

Probab=98.55  E-value=3.6e-08  Score=74.29  Aligned_cols=49  Identities=27%  Similarity=0.647  Sum_probs=44.5

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+-.|+||+....-|+.++|+|.||.-||+....++...|++||.++..
T Consensus         6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            3568999999999999999999999999999887777789999999985

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.3e-08  Score=74.62  Aligned_cols=49  Identities=31%  Similarity=0.820  Sum_probs=40.8

Q ss_pred             CCCccccccccccc-c------------CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGIL-I------------KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~-~------------~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..+|-.|.||.+-+ .            .|..+||||.++..|++.|+.++. +||.||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCccc
Confidence            34578999999874 3            347899999999999999999765 4999999854

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.9e-08  Score=72.90  Aligned_cols=49  Identities=29%  Similarity=0.697  Sum_probs=40.7

Q ss_pred             CCccccccccccccC---cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .....|.||+..|.+   -+.+||.|.|+..|+.+|+..-...||+||..++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            346799999998863   2457999999999999999855556999999886

>KOG1813|consensus

Probab=98.38  E-value=1.7e-07  Score=70.53  Aligned_cols=47  Identities=19%  Similarity=0.636  Sum_probs=41.4

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+.|-||...|.+||.+.|||.||..|..+-+..+. .|.+|.+.+..
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g  287 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHG  287 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhccccccCC-cceeccccccc
Confidence            456999999999999999999999999988877654 49999998874

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.36  E-value=2e-07  Score=54.29  Aligned_cols=43  Identities=23%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             CCccccccccccccCcEEc-cCCChhHHHHHHHHhh-cCCCcccc
Q psy18180         32 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICD-NSNLSCPM   74 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~-~~~~~CP~   74 (143)
                      ...+.|||....|.+||.- .|||+|.+..|.+++. ++...||.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3468999999999999985 8999999999999994 45567997

>KOG0297|consensus

Probab=98.22  E-value=9.3e-07  Score=70.22  Aligned_cols=51  Identities=31%  Similarity=0.849  Sum_probs=45.2

Q ss_pred             CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +.++++.|++|...+.+|+.+ .|||.||..|+..|+.. ...||.|+..+..
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQ   68 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccch
Confidence            367789999999999999995 99999999999999987 4569999888774

>KOG4172|consensus

Probab=98.20  E-value=3.9e-07  Score=51.78  Aligned_cols=46  Identities=24%  Similarity=0.663  Sum_probs=40.2

Q ss_pred             cccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccc
Q psy18180         35 VLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      -.|.||++...+.|..-|||. .|..|-.+.++.....||.||+++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            689999998888888899995 7999999988866667999999886

>KOG1002|consensus

Probab=98.14  E-value=2.1e-06  Score=69.36  Aligned_cols=50  Identities=32%  Similarity=0.748  Sum_probs=43.7

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhh----cCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~   81 (143)
                      ..+..|.+|.+.-.+++...|.|.||+.|+..+..    +.+.+||.|...++.
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            45779999999999999999999999999988775    456889999888764

>KOG4265|consensus

Probab=98.02  E-value=5e-06  Score=64.20  Aligned_cols=49  Identities=27%  Similarity=0.750  Sum_probs=41.3

Q ss_pred             CCccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +....|.||+.-.++-+.+||.|. .|..|.+...-+.+ .||+||+.+..
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc-CCCccccchHh
Confidence            447799999999999999999996 79999987764444 49999999874

>KOG0804|consensus

Probab=97.99  E-value=3.4e-06  Score=66.84  Aligned_cols=46  Identities=33%  Similarity=0.655  Sum_probs=37.6

Q ss_pred             CCccccccccccccCcE----EccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .+--+||||++-+...+    ++.|.|+|...|+..|+..   +||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence            34559999999998664    4589999999999999863   5999987655

>KOG1039|consensus

Probab=97.90  E-value=8e-06  Score=63.58  Aligned_cols=54  Identities=26%  Similarity=0.597  Sum_probs=41.8

Q ss_pred             CCCCCCccccccccccccCcE-----E---ccCCChhHHHHHHHHhhcC------CCcccccccccch
Q psy18180         28 NTLTPDSVLCLVCQGILIKPI-----K---LPCNHHVCLECLQRICDNS------NLSCPMCRKRLSI   81 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv-----~---l~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~   81 (143)
                      +.....+..|.||++...+..     .   .+|.|.||..||..|-...      ...||.||.....
T Consensus       155 a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  155 ALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             CcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            344456889999999887665     3   3699999999999998421      3579999987663

>KOG1785|consensus

Probab=97.89  E-value=6.1e-06  Score=64.72  Aligned_cols=47  Identities=30%  Similarity=0.652  Sum_probs=40.4

Q ss_pred             ccccccccccCcEEccCCChhHHHHHHHHhhcC-CCcccccccccchh
Q psy18180         36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-NLSCPMCRKRLSIW   82 (143)
Q Consensus        36 ~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~   82 (143)
                      .|.||-+.=++-.+-||||..|..|+..|.... +..||.||..+..+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            689999988887777999999999999999643 56799999998864

>KOG4692|consensus

Probab=97.82  E-value=2.6e-05  Score=60.41  Aligned_cols=53  Identities=23%  Similarity=0.614  Sum_probs=43.9

Q ss_pred             CCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         27 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        27 ~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-+..++-.||||..-..+.+..||+|.-|..||.+.+-+.. .|=.|...+.
T Consensus       415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k-~CFfCktTv~  467 (489)
T KOG4692|consen  415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK-RCFFCKTTVI  467 (489)
T ss_pred             CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCC-eeeEecceee
Confidence            3344567889999999888889999999999999999887654 5999987665

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.82  E-value=2.6e-06  Score=51.70  Aligned_cols=47  Identities=26%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             cccccccccccc----CcEEc----cCCChhHHHHHHHHhhc---C-------CCcccccccccc
Q psy18180         34 SVLCLVCQGILI----KPIKL----PCNHHVCLECLQRICDN---S-------NLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~----~pv~l----~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~   80 (143)
                      +..|+||+..+.    .|...    .|++.|+..||.+|+..   +       ...||.|++.+.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            578999998754    24333    59999999999999872   1       125999999886

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.82  E-value=2.7e-05  Score=43.88  Aligned_cols=41  Identities=34%  Similarity=0.822  Sum_probs=31.8

Q ss_pred             ccccccc--cccCcEEccCC-----ChhHHHHHHHHhhcC-CCcccccc
Q psy18180         36 LCLVCQG--ILIKPIKLPCN-----HHVCLECLQRICDNS-NLSCPMCR   76 (143)
Q Consensus        36 ~C~IC~~--~~~~pv~l~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr   76 (143)
                      .|.||++  .-.+|...||.     |.++..|+.+|+... ...||+|.
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  33467777885     789999999999743 45799984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4367|consensus

Probab=97.81  E-value=1.2e-05  Score=63.83  Aligned_cols=36  Identities=33%  Similarity=0.823  Sum_probs=32.6

Q ss_pred             CCCccccccccccccCcEEccCCChhHHHHHHHHhh
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD   66 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~   66 (143)
                      +++++.|+||...|.+|++++|+|..|+.|....+.
T Consensus         1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            357899999999999999999999999999987764

>KOG4185|consensus

Probab=97.77  E-value=2.2e-05  Score=60.02  Aligned_cols=69  Identities=28%  Similarity=0.526  Sum_probs=50.5

Q ss_pred             cccccccccccc------CcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         34 SVLCLVCQGILI------KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        34 ~~~C~IC~~~~~------~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      .+.|-||.+.|.      .|..+.|||++|..|+.+.+.++...||.||..+..+  ......+..|..+...++..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~--~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIP--DGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCC--chhHhhhhhhHHHHHHHHHH
Confidence            467999998887      5777889999999999999988888899999986431  11223444555555555443

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.77  E-value=2.9e-05  Score=47.57  Aligned_cols=30  Identities=30%  Similarity=0.680  Sum_probs=26.4

Q ss_pred             cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         51 PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        51 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      -|.|.|...||.+|++..+. ||++++....
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~-CPld~q~w~~   82 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGV-CPLDRQTWVL   82 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCC-CCCCCceeEE
Confidence            59999999999999997665 9999998763

>KOG1734|consensus

Probab=97.71  E-value=1.2e-05  Score=60.05  Aligned_cols=51  Identities=25%  Similarity=0.657  Sum_probs=40.7

Q ss_pred             CCCccccccccccccCc----------EEccCCChhHHHHHHHHhh-cCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKP----------IKLPCNHHVCLECLQRICD-NSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~p----------v~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   81 (143)
                      -.++-.|.||.+.+...          .+++|+|.|+..||+.|-- ....+||.|+..+..
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            34677999999876533          4679999999999999976 344579999998774

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.67  E-value=1.6e-05  Score=68.26  Aligned_cols=47  Identities=26%  Similarity=0.684  Sum_probs=37.3

Q ss_pred             cccccccccccc-----CcEEc--cCCChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180         34 SVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      .-.|+||+.++.     -|...  .|.|.|+..|+.+|++ .++..||.||..++
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            458999998876     23322  5999999999999999 34557999998775

>KOG4275|consensus

Probab=97.57  E-value=2e-05  Score=59.52  Aligned_cols=43  Identities=30%  Similarity=0.794  Sum_probs=36.9

Q ss_pred             CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .+..|.||++...+-+.|+|||. -|..|-.++.     .||+||+.+.
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----eCPICRqyi~  342 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----ECPICRQYIV  342 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhccccc-----cCchHHHHHH
Confidence            37899999999999999999995 5999977642     5999999875

>KOG1493|consensus

Probab=97.56  E-value=2.3e-05  Score=47.58  Aligned_cols=45  Identities=27%  Similarity=0.606  Sum_probs=34.6

Q ss_pred             cccccccccc------------CcEEc-cCCChhHHHHHHHHhh--cCCCcccccccccc
Q psy18180         36 LCLVCQGILI------------KPIKL-PCNHHVCLECLQRICD--NSNLSCPMCRKRLS   80 (143)
Q Consensus        36 ~C~IC~~~~~------------~pv~l-~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~   80 (143)
                      .|.||.-.|.            -|.++ -|.|.|...||.+|+.  .+...||+||+...
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            7888886664            24444 5999999999999998  23356999999765

>KOG0827|consensus

Probab=97.53  E-value=5.2e-05  Score=59.34  Aligned_cols=46  Identities=24%  Similarity=0.616  Sum_probs=34.0

Q ss_pred             cccccccccccCcEE---c-cCCChhHHHHHHHHhhcC--CCcccccccccc
Q psy18180         35 VLCLVCQGILIKPIK---L-PCNHHVCLECLQRICDNS--NLSCPMCRKRLS   80 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~---l-~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~   80 (143)
                      -.|.||.+.+-.-.-   + .|||+|+..|+.+|+...  +..||.|+-.+.
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            479999766553332   3 499999999999999843  346999994443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.45  E-value=0.00011  Score=41.07  Aligned_cols=43  Identities=28%  Similarity=0.652  Sum_probs=21.9

Q ss_pred             cccccccccC--cEEc--cCCChhHHHHHHHHhhcCCCccccccccc
Q psy18180         37 CLVCQGILIK--PIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRL   79 (143)
Q Consensus        37 C~IC~~~~~~--pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~   79 (143)
                      ||+|.+.+..  -...  +||+.+|..|..+.....+..||-||+..
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            6888887732  1223  69999999999999876566799999864

>KOG0828|consensus

Probab=97.43  E-value=7.3e-05  Score=60.17  Aligned_cols=50  Identities=28%  Similarity=0.614  Sum_probs=38.4

Q ss_pred             CCCcccccccccccc-----------------CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGILI-----------------KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~-----------------~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .+....|+||.....                 +-..+||.|.|+..|+.+|.+.-...||.||..++
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            344568999996432                 12235999999999999999855567999999876

>KOG1941|consensus

Probab=97.40  E-value=7.8e-05  Score=58.51  Aligned_cols=48  Identities=42%  Similarity=0.763  Sum_probs=38.4

Q ss_pred             Ccccccccccccc-CcE---EccCCChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-KPI---KLPCNHHVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-~pv---~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      -++.|..|.+.+. .|-   .+||.|.|+..|++.++. ++..+||.||+-.+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            3789999999886 333   369999999999999987 44568999996544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.32  E-value=6.7e-05  Score=42.89  Aligned_cols=45  Identities=29%  Similarity=0.684  Sum_probs=35.4

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ....|-.|...-...++++|||..|..|+.-+-.+   .||.|..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYn---gCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYN---GCPFCGTPFE   50 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChhhcc---CCCCCCCccc
Confidence            35677778887778889999999999997654322   3999999886

>KOG0825|consensus

Probab=97.22  E-value=7e-05  Score=63.24  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=37.3

Q ss_pred             CccccccccccccCcEE---ccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIK---LPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~---l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.||+|+..+.+-..   .+|+|.||..|+..|-+... +||+||..+.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhh
Confidence            34478888887775543   37999999999999988655 4999999886

>KOG2930|consensus

Probab=97.18  E-value=0.00027  Score=45.43  Aligned_cols=29  Identities=31%  Similarity=0.725  Sum_probs=25.1

Q ss_pred             cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         51 PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        51 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .|.|.|+..||.+|++..+. ||+|.+.-.
T Consensus        80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~  108 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV  108 (114)
T ss_pred             ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence            69999999999999997765 999977643

>KOG1645|consensus

Probab=97.16  E-value=0.00055  Score=54.06  Aligned_cols=48  Identities=19%  Similarity=0.588  Sum_probs=38.1

Q ss_pred             CccccccccccccCcE-----EccCCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKPI-----KLPCNHHVCLECLQRICDNS-NLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv-----~l~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   80 (143)
                      ...+||||++.+.-|.     .+.|||.|=..||++|+.+. ...||.|.....
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            3569999999988663     45799999999999999622 246999977655

>KOG3800|consensus

Probab=97.15  E-value=0.00033  Score=52.93  Aligned_cols=45  Identities=31%  Similarity=0.730  Sum_probs=35.9

Q ss_pred             ccccccc-cccCcEE-c---cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         36 LCLVCQG-ILIKPIK-L---PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        36 ~C~IC~~-~~~~pv~-l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .||+|.. .+.+|-. +   +|||..|.+|+...+..+...||.|...+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            5899984 4455532 2   899999999999999988888999977654

>KOG3039|consensus

Probab=97.10  E-value=0.00029  Score=52.17  Aligned_cols=48  Identities=25%  Similarity=0.463  Sum_probs=40.6

Q ss_pred             CccccccccccccCcEE---c-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIK---L-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~---l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..+.||+|.+.+.+.+.   | +|||.||..|+++++....+ ||+|..++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v-~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMV-DPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccccc-ccCCCCcCcc
Confidence            57899999999996532   3 89999999999999987665 9999988774

>KOG4739|consensus

Probab=97.06  E-value=0.00022  Score=52.59  Aligned_cols=44  Identities=32%  Similarity=0.788  Sum_probs=31.7

Q ss_pred             ccccccccccc-CcE-EccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         35 VLCLVCQGILI-KPI-KLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        35 ~~C~IC~~~~~-~pv-~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..|..|..... +|. .+.|+|.||..|...-...   .||.|++.+..
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~lCkk~ir~   49 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCPLCKKSIRI   49 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCcc---ccccccceeee
Confidence            46887776544 444 3489999999998754322   59999998764

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.04  E-value=0.00055  Score=52.97  Aligned_cols=51  Identities=25%  Similarity=0.591  Sum_probs=37.5

Q ss_pred             CCCCCccccccccccccC--cEE--ccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIK--PIK--LPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~--pv~--l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      +..++++ ||+|.+.+..  --.  .+||-..|+-|...+-.+-+..||.||....
T Consensus        10 sedeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          10 SEDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            3445565 9999987762  222  3799999999988876654557999999876

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.92  E-value=0.00081  Score=52.23  Aligned_cols=52  Identities=25%  Similarity=0.735  Sum_probs=41.2

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      ...++...|.||-+-+.-...+||+|..|.-|..+... .....||.||....
T Consensus        56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            34566789999999888888899999999999877544 23456999998643

>KOG1001|consensus

Probab=96.87  E-value=0.00055  Score=57.94  Aligned_cols=46  Identities=35%  Similarity=0.794  Sum_probs=39.7

Q ss_pred             cccccccccccCcEEccCCChhHHHHHHHHhhcC-CCcccccccccch
Q psy18180         35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-NLSCPMCRKRLSI   81 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   81 (143)
                      +.|.+|.+ ...++.+.|||.||..|+...+... ...||.||..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            79999999 8888899999999999999988743 3359999998774

>KOG1571|consensus

Probab=96.84  E-value=0.00042  Score=53.84  Aligned_cols=45  Identities=31%  Similarity=0.775  Sum_probs=35.6

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....|.||.+-..+.+.+||||.-|  |..-...  ...||+||..+..
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL  348 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence            3568999999999999999999877  6655433  3359999998863

>KOG1814|consensus

Probab=96.73  E-value=0.0038  Score=49.49  Aligned_cols=45  Identities=29%  Similarity=0.581  Sum_probs=33.3

Q ss_pred             CccccccccccccCc---EEccCCChhHHHHHHHHhh----c---CCCccccccc
Q psy18180         33 DSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICD----N---SNLSCPMCRK   77 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~----~---~~~~CP~Cr~   77 (143)
                      .-+.|.||++...-.   +.+||+|.||+.|+..++.    .   +...||.+.-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            368999999876632   4569999999999999886    1   2345776543

>KOG2817|consensus

Probab=96.67  E-value=0.0012  Score=51.88  Aligned_cols=50  Identities=24%  Similarity=0.535  Sum_probs=41.1

Q ss_pred             CCCcccccccccccc---CcEEccCCChhHHHHHHHHhhcCC--Ccccccccccc
Q psy18180         31 TPDSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~   80 (143)
                      ...-|.|||=.+.-.   .|..+.|||..+..-+.+..+++.  +.||.|-....
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~  385 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL  385 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence            345789999776554   678899999999999999998877  88999976654

>KOG2114|consensus

Probab=96.60  E-value=0.0022  Score=54.80  Aligned_cols=43  Identities=30%  Similarity=0.702  Sum_probs=35.5

Q ss_pred             ccccccccccccCcEE-ccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-.|..|...+.-|.+ ..|||.|+++|+.    .+...||.|+....
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPELR  883 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhhh
Confidence            3699999999999976 4999999999999    34456999977543

>KOG1940|consensus

Probab=96.54  E-value=0.0021  Score=48.69  Aligned_cols=60  Identities=20%  Similarity=0.439  Sum_probs=44.5

Q ss_pred             cccccccccccc----CcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180         34 SVLCLVCQGILI----KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        34 ~~~C~IC~~~~~----~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      ...||||.+.+.    .|..++|||.....|+......+ ..||.|.+ +..        ...+.+.+...|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~-~~d--------~~~~~~~~d~~l~~  221 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK-PGD--------MSHYFRKLDKELAG  221 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc-hHH--------HHHHHHHHHHHHhc
Confidence            345999998765    56677999999999999988877 89999988 442        34455555555554

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.51  E-value=0.0025  Score=44.26  Aligned_cols=50  Identities=28%  Similarity=0.738  Sum_probs=36.7

Q ss_pred             CccccccccccccCcEEccCCCh------------h-HHHHHHHHhhc------------------------------CC
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH------------V-CLECLQRICDN------------------------------SN   69 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~------------f-C~~Ci~~~~~~------------------------------~~   69 (143)
                      ++.+||||++...+.|.|-|.-.            | ...|+.++-+.                              ..
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE   80 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence            47899999999999999865421            1 46788776431                              13


Q ss_pred             Ccccccccccchh
Q psy18180         70 LSCPMCRKRLSIW   82 (143)
Q Consensus        70 ~~CP~Cr~~~~~~   82 (143)
                      ..||+||..+..|
T Consensus        81 L~CPLCRG~V~GW   93 (162)
T PF07800_consen   81 LACPLCRGEVKGW   93 (162)
T ss_pred             ccCccccCceece
Confidence            4699999999865

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=96.50  E-value=0.0025  Score=42.95  Aligned_cols=49  Identities=20%  Similarity=0.571  Sum_probs=41.1

Q ss_pred             CccccccccccccCcEEc-c---CCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKL-P---CNHHVCLECLQRICDNS--NLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l-~---CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   81 (143)
                      .-++|.||.+.-.+...+ |   ||-..|..|-...|+..  ...||.|+..+.+
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            457999999999988887 3   99999999999988833  3569999998874

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.46  E-value=0.0031  Score=47.63  Aligned_cols=49  Identities=20%  Similarity=0.464  Sum_probs=38.4

Q ss_pred             CCCccccccccccccCc---EEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKP---IKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~p---v~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....+.|||....|..-   +.+ +|||.|+..++...-  ....||.|..++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCcccc
Confidence            46688999999988632   223 999999999999873  23459999999873

>KOG3970|consensus

Probab=96.37  E-value=0.0068  Score=44.56  Aligned_cols=48  Identities=25%  Similarity=0.598  Sum_probs=39.0

Q ss_pred             cccccccccccc--CcEEccCCChhHHHHHHHHhhc-------CCCcccccccccch
Q psy18180         34 SVLCLVCQGILI--KPIKLPCNHHVCLECLQRICDN-------SNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~--~pv~l~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~   81 (143)
                      .-.|.+|...+.  +-+.+.|-|.|+-.|+..|..+       .+..||.|...+..
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            347999998887  5667899999999999999762       24679999998864

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=96.20  E-value=0.0018  Score=47.98  Aligned_cols=47  Identities=36%  Similarity=0.823  Sum_probs=36.3

Q ss_pred             ccccccccc-cccCcE--Ec--c-CCChhHHHHHHHHhhcCCCccc--ccccccc
Q psy18180         34 SVLCLVCQG-ILIKPI--KL--P-CNHHVCLECLQRICDNSNLSCP--MCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~-~~~~pv--~l--~-CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~   80 (143)
                      +-.||||.. .|-+|-  .+  | |-|..|.+|+.+.+..+...||  -|.+-+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            568999995 344552  22  5 9999999999999998888899  6866443

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.17  E-value=0.0065  Score=34.27  Aligned_cols=44  Identities=25%  Similarity=0.616  Sum_probs=23.0

Q ss_pred             ccccccccccccCcEEc-cCCChhHHH---HHHHHhhcCCCccccccc
Q psy18180         34 SVLCLVCQGILIKPIKL-PCNHHVCLE---CLQRICDNSNLSCPMCRK   77 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~---Ci~~~~~~~~~~CP~Cr~   77 (143)
                      .+.|||....+..|+.- .|.|.-|.+   -+......+...||.|.+
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence            37899999999999976 799997743   233333355678999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG3161|consensus

Probab=96.14  E-value=0.0027  Score=52.91  Aligned_cols=41  Identities=32%  Similarity=0.848  Sum_probs=32.5

Q ss_pred             CCCCcccccccccccc----CcEEccCCChhHHHHHHHHhhcCCCccc
Q psy18180         30 LTPDSVLCLVCQGILI----KPIKLPCNHHVCLECLQRICDNSNLSCP   73 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~----~pv~l~CgH~fC~~Ci~~~~~~~~~~CP   73 (143)
                      ...+-+.|+||...|.    .|+.+-|||+.|..|++.....   .||
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp   51 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP   51 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence            3445678999987765    7899999999999999986543   477

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.83  E-value=0.0027  Score=41.06  Aligned_cols=32  Identities=31%  Similarity=0.688  Sum_probs=26.0

Q ss_pred             CCCccccccccccccCcEE--ccCCChhHHHHHH
Q psy18180         31 TPDSVLCLVCQGILIKPIK--LPCNHHVCLECLQ   62 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~--l~CgH~fC~~Ci~   62 (143)
                      ..++-.|++|...+.+...  .||||.|+..|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3456789999999987654  3999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1952|consensus

Probab=95.73  E-value=0.013  Score=50.28  Aligned_cols=47  Identities=21%  Similarity=0.641  Sum_probs=36.8

Q ss_pred             Ccccccccccccc--CcEEc--cCCChhHHHHHHHHhhc------CCCccccccccc
Q psy18180         33 DSVLCLVCQGILI--KPIKL--PCNHHVCLECLQRICDN------SNLSCPMCRKRL   79 (143)
Q Consensus        33 ~~~~C~IC~~~~~--~pv~l--~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~   79 (143)
                      ..+.|.||.+.+.  .|+-.  .|.|.|...||.+|..+      ..+.||.|+...
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            4689999999876  44422  69999999999999873      357899998543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.69  E-value=0.017  Score=40.19  Aligned_cols=51  Identities=25%  Similarity=0.500  Sum_probs=37.2

Q ss_pred             CCCCccccccccccccCcEEccCCC-----hhHHHHHHHHhh-cCCCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILIKPIKLPCNH-----HVCLECLQRICD-NSNLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   81 (143)
                      .+..+-.|-||.+... +..-||.-     ..++.|+++|+. ++...|+.|...+..
T Consensus         4 ~s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          4 VSLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             cCCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            3445779999998754 33346554     349999999998 446779999988764

>KOG4362|consensus

Probab=95.48  E-value=0.007  Score=51.00  Aligned_cols=49  Identities=20%  Similarity=0.589  Sum_probs=41.5

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhh--cCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD--NSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~   81 (143)
                      ..+.|+||...+..|+.+.|.|.||..|+-..+.  ++...||+|+..+..
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence            3789999999999999999999999999987665  335679999977663

>KOG0826|consensus

Probab=95.23  E-value=0.014  Score=45.04  Aligned_cols=49  Identities=27%  Similarity=0.487  Sum_probs=39.5

Q ss_pred             CCCccccccccccccCcEEcc-CCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..+.-.||||...-.+|..+. =|-.||..|+-.++.+.+ .||+-..++.
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~-~CPVT~~p~~  346 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG-HCPVTGYPAS  346 (357)
T ss_pred             CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC-CCCccCCcch
Confidence            345669999999999998886 499999999999998544 5997655544

>KOG3002|consensus

Probab=95.22  E-value=0.012  Score=45.26  Aligned_cols=47  Identities=32%  Similarity=0.634  Sum_probs=37.2

Q ss_pred             CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...+-+.||||.+.+..|+.- +=||.-|..|-.+.    ...||.||..+.
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIG   91 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCccccccc
Confidence            345677999999999998643 56899999997643    235999999987

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=95.16  E-value=0.026  Score=30.73  Aligned_cols=39  Identities=23%  Similarity=0.693  Sum_probs=23.0

Q ss_pred             cccccccccCcEEc---cCCChhHHHHHHHHhhcCCC-ccccc
Q psy18180         37 CLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNL-SCPMC   75 (143)
Q Consensus        37 C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~-~CP~C   75 (143)
                      |.+|.++...-+.-   .|+-.++..|+..++..... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67788887766654   39989999999999985442 59987

; PDB: 3NW0_A 2CT0_A.

>KOG1812|consensus

Probab=94.79  E-value=0.026  Score=45.02  Aligned_cols=48  Identities=25%  Similarity=0.621  Sum_probs=32.6

Q ss_pred             CccccccccccccCc-E---EccCCChhHHHHHHHHhh-----cCCCcccc--cccccc
Q psy18180         33 DSVLCLVCQGILIKP-I---KLPCNHHVCLECLQRICD-----NSNLSCPM--CRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p-v---~l~CgH~fC~~Ci~~~~~-----~~~~~CP~--Cr~~~~   80 (143)
                      ....|.||..-...+ .   +..|+|.||..|+.+.+.     .....||.  |...++
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~  203 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT  203 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence            467999999333322 2   347999999999998887     33456764  544444

>PHA03096 p28-like protein; Provisional

Probab=94.71  E-value=0.023  Score=43.50  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             ccccccccccc-CcE------Ec-cCCChhHHHHHHHHhhcC--CCccccccccc
Q psy18180         35 VLCLVCQGILI-KPI------KL-PCNHHVCLECLQRICDNS--NLSCPMCRKRL   79 (143)
Q Consensus        35 ~~C~IC~~~~~-~pv------~l-~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~   79 (143)
                      -.|.||++... .+.      ++ .|.|.||..|+..|....  ...||.|+...
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~  233 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLN  233 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchh
Confidence            57999998654 221      23 699999999999997622  23466665543

>PHA02862 5L protein; Provisional

Probab=94.51  E-value=0.042  Score=37.73  Aligned_cols=46  Identities=20%  Similarity=0.596  Sum_probs=34.4

Q ss_pred             cccccccccccCcEEccCCC-----hhHHHHHHHHhh-cCCCcccccccccch
Q psy18180         35 VLCLVCQGILIKPIKLPCNH-----HVCLECLQRICD-NSNLSCPMCRKRLSI   81 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l~CgH-----~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   81 (143)
                      -.|-||.+.-.+. .-||.-     -.++.|+.+|+. .+...|+.|+..+..
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            3688999876544 346654     368999999998 445679999998764

>KOG1428|consensus

Probab=94.50  E-value=0.062  Score=49.27  Aligned_cols=53  Identities=32%  Similarity=0.817  Sum_probs=38.5

Q ss_pred             CCCCCccccccccc-ccc-Cc-EEccCCChhHHHHHHHHhhcC---------CCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQG-ILI-KP-IKLPCNHHVCLECLQRICDNS---------NLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~-~~~-~p-v~l~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~~~~~   81 (143)
                      .....+-.|-||+. .+. .| +.+.|+|.|+..|..+.+.+.         -..||.|...+..
T Consensus      3481 tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            34445678999984 333 33 568999999999998877632         2469999888763

>KOG4445|consensus

Probab=94.41  E-value=0.034  Score=42.62  Aligned_cols=48  Identities=29%  Similarity=0.731  Sum_probs=36.2

Q ss_pred             cccccccccccc-Cc--EEccCCChhHHHHHHHHhhc----------------------CCCcccccccccch
Q psy18180         34 SVLCLVCQGILI-KP--IKLPCNHHVCLECLQRICDN----------------------SNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~-~p--v~l~CgH~fC~~Ci~~~~~~----------------------~~~~CP~Cr~~~~~   81 (143)
                      .-+|.||+-=|. .|  +.++|.|-|+..|+.+++..                      -...||+||..+..
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            458999997665 34  34699999999999988741                      12359999998875

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=94.28  E-value=0.057  Score=33.08  Aligned_cols=48  Identities=23%  Similarity=0.604  Sum_probs=22.8

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+..-     ++.+.  .|+--.|+.|.+--.+.++..||.|+....
T Consensus         8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk   62 (80)
T PF14569_consen    8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK   62 (80)
T ss_dssp             SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred             CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence            3568999998654     34333  688889999998777777788999997765

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.20  E-value=0.018  Score=31.85  Aligned_cols=35  Identities=34%  Similarity=0.814  Sum_probs=22.8

Q ss_pred             cCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         45 IKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        45 ~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .+--.+.|. |-.|..|+...+..+.. ||+|..+++
T Consensus        11 ~~k~Li~C~dHYLCl~CLt~ml~~s~~-C~iC~~~LP   46 (50)
T PF03854_consen   11 ANKGLIKCSDHYLCLNCLTLMLSRSDR-CPICGKPLP   46 (50)
T ss_dssp             --SSEEE-SS-EEEHHHHHHT-SSSSE-ETTTTEE--
T ss_pred             cCCCeeeecchhHHHHHHHHHhccccC-CCcccCcCc
Confidence            344456787 77899999998887654 999999886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG0298|consensus

Probab=93.88  E-value=0.024  Score=50.73  Aligned_cols=46  Identities=26%  Similarity=0.579  Sum_probs=38.2

Q ss_pred             cccccccccccc-CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~-~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...|+||.+++. .-....|||.+|..|...|+..... ||.|.....
T Consensus      1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~-~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSR-CPICKSIKG 1199 (1394)
T ss_pred             ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhcc-Ccchhhhhh
Confidence            458999999999 4456689999999999999987665 999975443

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=93.61  E-value=0.033  Score=30.92  Aligned_cols=39  Identities=31%  Similarity=0.698  Sum_probs=24.0

Q ss_pred             ccccccccc--CcEEccCCC-----hhHHHHHHHHhh-cCCCccccc
Q psy18180         37 CLVCQGILI--KPIKLPCNH-----HVCLECLQRICD-NSNLSCPMC   75 (143)
Q Consensus        37 C~IC~~~~~--~pv~l~CgH-----~fC~~Ci~~~~~-~~~~~CP~C   75 (143)
                      |-||++.-.  .|...||+-     ..+..|+.+|+. +++..|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            668887654  256667663     358899999998 445668877

>KOG1815|consensus

Probab=93.33  E-value=0.11  Score=42.12  Aligned_cols=37  Identities=24%  Similarity=0.438  Sum_probs=31.0

Q ss_pred             CCCCccccccccccccC-cEEccCCChhHHHHHHHHhh
Q psy18180         30 LTPDSVLCLVCQGILIK-PIKLPCNHHVCLECLQRICD   66 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~~~   66 (143)
                      ......+|.||.+.+.. .+.+.|||.||..|+..++.
T Consensus        66 ~~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~  103 (444)
T KOG1815|consen   66 KKKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG  103 (444)
T ss_pred             CCCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence            34557899999998885 55669999999999999886

>KOG2932|consensus

Probab=93.21  E-value=0.041  Score=42.38  Aligned_cols=30  Identities=40%  Similarity=1.007  Sum_probs=22.7

Q ss_pred             EccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         49 KLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        49 ~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .++|.|.||.+|...-   ..+.||.|...+..
T Consensus       106 mIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen  106 MIPCKHVFCLECARSD---SDKICPLCDDRVQR  135 (389)
T ss_pred             ccccchhhhhhhhhcC---ccccCcCcccHHHH
Confidence            4699999999997642   23469999776654

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.00  E-value=0.076  Score=41.92  Aligned_cols=30  Identities=33%  Similarity=0.923  Sum_probs=22.6

Q ss_pred             CCChhHHHHHHHHhhc------------CCCcccccccccch
Q psy18180         52 CNHHVCLECLQRICDN------------SNLSCPMCRKRLSI   81 (143)
Q Consensus        52 CgH~fC~~Ci~~~~~~------------~~~~CP~Cr~~~~~   81 (143)
                      |.-..|..|+-+|+..            +...||+||+.+..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            3344589999999862            34579999999873

They are purported to be transmembrane protein-precursors but their function is unknown.

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.66  E-value=0.073  Score=41.13  Aligned_cols=50  Identities=24%  Similarity=0.547  Sum_probs=38.7

Q ss_pred             CCCCcccccccccccc---CcEEccCCChhHHHHHHHHhhcC--CCccccccccc
Q psy18180         30 LTPDSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRL   79 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~   79 (143)
                      ....-|.||+=.+.-.   .|+.+.|||..-..-+.+..++|  ++.||.|-...
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~  386 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS  386 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence            4456789998776554   68889999999999998887765  46799996543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=91.96  E-value=0.12  Score=29.39  Aligned_cols=40  Identities=25%  Similarity=0.591  Sum_probs=25.7

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhh-cCCCccccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD-NSNLSCPMCRKRL   79 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~   79 (143)
                      +.|.||.|.+.+...       .+...|...-.. .....||+|...+
T Consensus         1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~~   41 (54)
T PF05605_consen    1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSRV   41 (54)
T ss_pred             CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhhh
Confidence            368999999954422       355556555443 3457799997643

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3268|consensus

Probab=91.89  E-value=0.16  Score=36.22  Aligned_cols=46  Identities=20%  Similarity=0.553  Sum_probs=32.0

Q ss_pred             cccccccccc---CcE----EccCCChhHHHHHHHHhhc-----CC-----Ccccccccccch
Q psy18180         36 LCLVCQGILI---KPI----KLPCNHHVCLECLQRICDN-----SN-----LSCPMCRKRLSI   81 (143)
Q Consensus        36 ~C~IC~~~~~---~pv----~l~CgH~fC~~Ci~~~~~~-----~~-----~~CP~Cr~~~~~   81 (143)
                      -|.||+.+--   .|-    .+.||..|++-|+..|++.     ++     ..||.|..++..
T Consensus       167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            5777775432   121    2379999999999999972     11     259999888763

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.75  E-value=0.11  Score=35.32  Aligned_cols=33  Identities=18%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             ccccccccccccC--cE-EccCC------ChhHHHHHHHHhh
Q psy18180         34 SVLCLVCQGILIK--PI-KLPCN------HHVCLECLQRICD   66 (143)
Q Consensus        34 ~~~C~IC~~~~~~--pv-~l~Cg------H~fC~~Ci~~~~~   66 (143)
                      ...|.||.+...+  -+ .++||      |.||..|+.+|-.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            6799999998876  33 34666      5699999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3579|consensus

Probab=91.17  E-value=0.13  Score=39.26  Aligned_cols=70  Identities=20%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             CccccccccccccCcEEccC----CChhHHHHHHHHhhcC----CCccccccc-ccchhccccCCCCchhhHHHHHHHHH
Q psy18180         33 DSVLCLVCQGILIKPIKLPC----NHHVCLECLQRICDNS----NLSCPMCRK-RLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~C----gH~fC~~Ci~~~~~~~----~~~CP~Cr~-~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      .-+.|.+|.+-+.+-..+.|    .|.||..|-.+.++..    .+.||.-.+ ++.        ........++..|..
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLv--------gS~vPWAFMQGEIat  338 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLV--------GSNVPWAFMQGEIAT  338 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCccc--------CCcccHHHhhhhHHH
Confidence            35899999999999887766    5999999999888732    234553211 111        123334455556665


Q ss_pred             HhhhHHh
Q psy18180        104 YYKKEVD  110 (143)
Q Consensus       104 ~~~~~~~  110 (143)
                      .+..+.+
T Consensus       339 ILagdvk  345 (352)
T KOG3579|consen  339 ILAGDVK  345 (352)
T ss_pred             Hhcccee
Confidence            5555443

>KOG1100|consensus

Probab=91.00  E-value=0.097  Score=38.29  Aligned_cols=39  Identities=31%  Similarity=0.709  Sum_probs=30.4

Q ss_pred             cccccccccCcEEccCCC-hhHHHHHHHHhhcCCCcccccccccc
Q psy18180         37 CLVCQGILIKPIKLPCNH-HVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        37 C~IC~~~~~~pv~l~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      |-.|.+--..-+.+||.| .+|..|-..     -..||.|+....
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhh
Confidence            889998777766779998 589999553     235999988765

>KOG4185|consensus

Probab=90.21  E-value=0.046  Score=41.80  Aligned_cols=45  Identities=31%  Similarity=0.787  Sum_probs=36.5

Q ss_pred             cccccccccccc------CcEEcc--------CCChhHHHHHHHHhhcCCCcccccccc
Q psy18180         34 SVLCLVCQGILI------KPIKLP--------CNHHVCLECLQRICDNSNLSCPMCRKR   78 (143)
Q Consensus        34 ~~~C~IC~~~~~------~pv~l~--------CgH~fC~~Ci~~~~~~~~~~CP~Cr~~   78 (143)
                      +..|.||...+.      .|..+.        |||+.|..|+...+...+..||.|+..
T Consensus       207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~  265 (296)
T KOG4185|consen  207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS  265 (296)
T ss_pred             HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence            357889987766      355566        999999999999988666889999875

>KOG3899|consensus

Probab=89.78  E-value=0.25  Score=37.91  Aligned_cols=30  Identities=37%  Similarity=0.853  Sum_probs=23.4

Q ss_pred             CCChhHHHHHHHHhh------------cCCCcccccccccch
Q psy18180         52 CNHHVCLECLQRICD------------NSNLSCPMCRKRLSI   81 (143)
Q Consensus        52 CgH~fC~~Ci~~~~~------------~~~~~CP~Cr~~~~~   81 (143)
                      |....|.+|+.+|+.            .++..||+||+.+..
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            455678999999985            245679999999874

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=89.42  E-value=0.015  Score=35.00  Aligned_cols=42  Identities=26%  Similarity=0.463  Sum_probs=22.9

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ++.||.|...+..--    ||.+|..|-..+...  ..||.|.+.+..
T Consensus         1 e~~CP~C~~~L~~~~----~~~~C~~C~~~~~~~--a~CPdC~~~Le~   42 (70)
T PF07191_consen    1 ENTCPKCQQELEWQG----GHYHCEACQKDYKKE--AFCPDCGQPLEV   42 (70)
T ss_dssp             --B-SSS-SBEEEET----TEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred             CCcCCCCCCccEEeC----CEEECccccccceec--ccCCCcccHHHH
Confidence            368999998765321    788888887765443  359999888763

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.32  E-value=0.43  Score=28.87  Aligned_cols=27  Identities=22%  Similarity=0.599  Sum_probs=21.6

Q ss_pred             cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         51 PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        51 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .=.|+||..|.+..+..   .||.|...+.
T Consensus        26 tfEcTFCadCae~~l~g---~CPnCGGelv   52 (84)
T COG3813          26 TFECTFCADCAENRLHG---LCPNCGGELV   52 (84)
T ss_pred             EEeeehhHhHHHHhhcC---cCCCCCchhh
Confidence            34578999999987643   4999998887

>KOG3039|consensus

Probab=89.28  E-value=0.22  Score=37.25  Aligned_cols=32  Identities=13%  Similarity=0.006  Sum_probs=29.0

Q ss_pred             cccccccccccCcEEccCCChhHHHHHHHHhh
Q psy18180         35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICD   66 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~   66 (143)
                      --|.+|++.+.+|+.++=||.||+.||-+++.
T Consensus        44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            36799999999999999999999999988765

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.85  E-value=0.19  Score=24.26  Aligned_cols=21  Identities=24%  Similarity=0.592  Sum_probs=10.1

Q ss_pred             ccccccccccCcEEc-c-CCChh
Q psy18180         36 LCLVCQGILIKPIKL-P-CNHHV   56 (143)
Q Consensus        36 ~C~IC~~~~~~pv~l-~-CgH~f   56 (143)
                      .||-|.......... | |||.|
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCC
Confidence            466666555432222 2 55554

Several members are annotated as putative helicases.

>KOG2034|consensus

Probab=87.30  E-value=0.31  Score=42.45  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=27.3

Q ss_pred             CCcccccccccccc-CcEE-ccCCChhHHHHHHHHhh
Q psy18180         32 PDSVLCLVCQGILI-KPIK-LPCNHHVCLECLQRICD   66 (143)
Q Consensus        32 ~~~~~C~IC~~~~~-~pv~-l~CgH~fC~~Ci~~~~~   66 (143)
                      +..-.|.+|...+. .|-. .+|||.|+..|+.+...
T Consensus       815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            34568999997654 6654 49999999999988754

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=87.23  E-value=0.045  Score=36.36  Aligned_cols=47  Identities=21%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             Ccccccccccccc---Cc-E-EccCCChhHHHHHHHHhhcCCCccccccccc
Q psy18180         33 DSVLCLVCQGILI---KP-I-KLPCNHHVCLECLQRICDNSNLSCPMCRKRL   79 (143)
Q Consensus        33 ~~~~C~IC~~~~~---~p-v-~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~   79 (143)
                      .+-.|.+|...|.   ++ . -..|+|.+|..|-...-......|.+|.+.-
T Consensus        53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~r  104 (118)
T PF02318_consen   53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQR  104 (118)
T ss_dssp             CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHHH
T ss_pred             CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHHH
Confidence            4669999987543   32 2 2379999999996652223345699997643

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>KOG4718|consensus

Probab=86.89  E-value=0.49  Score=34.62  Aligned_cols=66  Identities=20%  Similarity=0.515  Sum_probs=47.0

Q ss_pred             cchHHHHHHHHHhhcccccccccCCCCCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180          2 LDKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      |+.-.+.++...+.+-            ....-..|.+|..+.-.-+.- +||-.|...|+..++.... .||.|.--.+
T Consensus       161 l~~ralaELe~YL~s~------------y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~-~cphc~d~w~  227 (235)
T KOG4718|consen  161 LGPRALAELEFYLSSN------------YADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRD-ICPHCGDLWT  227 (235)
T ss_pred             EchHHHHHHHHHHHhh------------hHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccC-cCCchhcccC
Confidence            3445666777777661            112245899999988766655 6888899999999998744 5999966554

>PLN02189 cellulose synthase

Probab=85.35  E-value=0.57  Score=41.73  Aligned_cols=47  Identities=21%  Similarity=0.581  Sum_probs=36.2

Q ss_pred             cccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-.|.||.+.+.     ++-+.  .|+--.|+.|.+--.+.++..||.|+....
T Consensus        34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK   87 (1040)
T ss_pred             CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            459999998765     33322  488889999997666677888999998876

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression

Probab=85.32  E-value=0.92  Score=29.55  Aligned_cols=45  Identities=24%  Similarity=0.578  Sum_probs=29.2

Q ss_pred             ccccccccccccCcEE--------ccC---CChhHHHHHHHHhh--------cCCCcccccccc
Q psy18180         34 SVLCLVCQGILIKPIK--------LPC---NHHVCLECLQRICD--------NSNLSCPMCRKR   78 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~--------l~C---gH~fC~~Ci~~~~~--------~~~~~CP~Cr~~   78 (143)
                      ...|..|..--.+..+        ..|   .-.||..||..++.        .....||.||..
T Consensus         7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi   70 (105)
T PF10497_consen    7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI   70 (105)
T ss_pred             CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence            4567777764333321        235   66799999987764        345679999774

This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].

>PLN02436 cellulose synthase A

Probab=85.24  E-value=0.57  Score=41.85  Aligned_cols=48  Identities=25%  Similarity=0.665  Sum_probs=36.6

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+...     ++-+.  .|+--.|+.|.+--.+.++..||.|++...
T Consensus        35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~   89 (1094)
T PLN02436         35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK   89 (1094)
T ss_pred             CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            3459999998764     33332  488889999997666677788999998876

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=85.16  E-value=0.96  Score=25.84  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=24.4

Q ss_pred             ccccccccccc--cCcEEc--cCCChhHHHHHHH
Q psy18180         34 SVLCLVCQGIL--IKPIKL--PCNHHVCLECLQR   63 (143)
Q Consensus        34 ~~~C~IC~~~~--~~pv~l--~CgH~fC~~Ci~~   63 (143)
                      .-.|++|.+.|  .+.++.  .||-.|++.|..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            56899999999  566655  5999999999765

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=84.06  E-value=0.74  Score=41.21  Aligned_cols=48  Identities=25%  Similarity=0.663  Sum_probs=36.5

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+...     +|-+.  .||--.|+.|.+--.+.++..||.|+....
T Consensus        16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            3559999998754     34332  588889999997655677788999998876

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=83.73  E-value=0.55  Score=29.73  Aligned_cols=37  Identities=27%  Similarity=0.740  Sum_probs=28.5

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-.|.||...+..+     ||.||..|..+    .+ .|.+|.+.+.
T Consensus        44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk----kG-iCamCGKki~   80 (90)
T PF10235_consen   44 SSKCKICKTKVHQP-----GAKYCQTCAYK----KG-ICAMCGKKIL   80 (90)
T ss_pred             CccccccccccccC-----CCccChhhhcc----cC-cccccCCeec
Confidence            45899998766654     88999999664    23 4999999875

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>PRK04023 DNA polymerase II large subunit; Validated

Probab=82.94  E-value=1.6  Score=38.89  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=38.5

Q ss_pred             CCccccccccccccCcEEccCCC-----hhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNH-----HVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH-----~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      .....|+-|.........-.||.     .||..|-..   .+...||.|...+..    .....+.+...+...++.
T Consensus       624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~---~~~y~CPKCG~El~~----~s~~~i~l~~~~~~A~~~  693 (1121)
T PRK04023        624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE---VEEDECEKCGREPTP----YSKRKIDLKELYDRALEN  693 (1121)
T ss_pred             ccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc---CCCCcCCCCCCCCCc----cceEEecHHHHHHHHHHH
Confidence            34568999998754332335884     499999332   234569999998874    223344444444444333

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=82.18  E-value=1.8  Score=37.80  Aligned_cols=53  Identities=23%  Similarity=0.584  Sum_probs=39.4

Q ss_pred             CCCCCccccccccc--cccCcEEccCCCh-----hHHHHHHHHhh-cCCCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQG--ILIKPIKLPCNHH-----VCLECLQRICD-NSNLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~--~~~~pv~l~CgH~-----fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   81 (143)
                      +.-+|+-.|.||..  .-.+|..=||..+     .++.|+.+|+. ++.+.|-.|..++.-
T Consensus         7 ~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F   67 (1175)
T COG5183           7 PMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF   67 (1175)
T ss_pred             CCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence            34456789999984  4447766677654     58999999998 556789999887653

>KOG0309|consensus

Probab=82.08  E-value=0.87  Score=39.36  Aligned_cols=40  Identities=18%  Similarity=0.430  Sum_probs=28.4

Q ss_pred             ccccccccccccCcE--EccCCChhHHHHHHHHhhcCCCcccc
Q psy18180         34 SVLCLVCQGILIKPI--KLPCNHHVCLECLQRICDNSNLSCPM   74 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv--~l~CgH~fC~~Ci~~~~~~~~~~CP~   74 (143)
                      .+.|.||.-...-..  ...|||..+.+|...|+..+. .||.
T Consensus      1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred             eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCC
Confidence            445666654444322  237999999999999999776 4885

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit

Probab=82.03  E-value=1.5  Score=39.22  Aligned_cols=48  Identities=29%  Similarity=0.656  Sum_probs=36.8

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+...     +|-+.  .|+--.|+.|.+--.+.++..||.|+....
T Consensus        14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~   68 (1044)
T PLN02915         14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK   68 (1044)
T ss_pred             CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            3568999998754     34333  588889999997656677788999998876

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=81.57  E-value=1.8  Score=24.89  Aligned_cols=43  Identities=23%  Similarity=0.568  Sum_probs=28.4

Q ss_pred             ccccccccccCc--EEccCC--ChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         36 LCLVCQGILIKP--IKLPCN--HHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        36 ~C~IC~~~~~~p--v~l~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .|-.|...+...  -..-|.  .+||..|....+.  + .||.|...+..
T Consensus         7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~--~-~CPNCgGelv~   53 (57)
T PF06906_consen    7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN--G-VCPNCGGELVR   53 (57)
T ss_pred             CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc--C-cCcCCCCcccc
Confidence            466666655422  122343  4799999999874  2 49999888763

This family contains a number of conserved cysteine residues and its function is unknown.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=81.32  E-value=0.19  Score=23.51  Aligned_cols=7  Identities=43%  Similarity=1.265  Sum_probs=3.7

Q ss_pred             ccccccc
Q psy18180         72 CPMCRKR   78 (143)
Q Consensus        72 CP~Cr~~   78 (143)
                      ||.|.+.
T Consensus        16 C~~CG~~   22 (23)
T PF13240_consen   16 CPNCGTP   22 (23)
T ss_pred             hhhhCCc
Confidence            6655543

>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length

Probab=81.09  E-value=0.97  Score=26.82  Aligned_cols=12  Identities=25%  Similarity=0.686  Sum_probs=9.0

Q ss_pred             hhHHHHHHHHhh
Q psy18180         55 HVCLECLQRICD   66 (143)
Q Consensus        55 ~fC~~Ci~~~~~   66 (143)
                      .||+.|+.+|..
T Consensus        11 gFCRNCLskWy~   22 (68)
T PF06844_consen   11 GFCRNCLSKWYR   22 (68)
T ss_dssp             S--HHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            499999999987

The function of this family is unknown.; PDB: 2O35_A 3FYB_B.

>PLN02400 cellulose synthase

Probab=80.95  E-value=0.84  Score=40.90  Aligned_cols=48  Identities=21%  Similarity=0.591  Sum_probs=36.3

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+...     +|-+.  .|+--.|+.|.+--.+.++..||.|+....
T Consensus        35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk   89 (1085)
T PLN02400         35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR   89 (1085)
T ss_pred             CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence            3459999998754     34333  588889999996555567778999998876

>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional

Probab=80.82  E-value=1.2  Score=34.53  Aligned_cols=50  Identities=14%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             CCCCCCccccccccccccCcEE-c--cCC--ChhHHHHHHHHhhcCCCcccccccc
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIK-L--PCN--HHVCLECLQRICDNSNLSCPMCRKR   78 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~-l--~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~   78 (143)
                      .+..+..-.||||.....-.+. +  .=|  +.+|..|-..|--. ...||.|...
T Consensus       181 ~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~  235 (309)
T PRK03564        181 AEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQS  235 (309)
T ss_pred             cccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence            3334457899999997654432 1  223  44688898888765 3459999763

>KOG3053|consensus

Probab=80.74  E-value=3  Score=31.51  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=36.2

Q ss_pred             CCCCccccccccccccCcEEc----cCC-----ChhHHHHHHHHhhcC-------CCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIKPIKL----PCN-----HHVCLECLQRICDNS-------NLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l----~Cg-----H~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~   80 (143)
                      ..+.+-.|-||+..=.+-...    ||.     |-.+..|+.+|++..       .+.||.|+....
T Consensus        16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi   82 (293)
T KOG3053|consen   16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI   82 (293)
T ss_pred             ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence            345577899999765543221    553     558999999999832       357999998765

>PLN02195 cellulose synthase A

Probab=80.60  E-value=1.2  Score=39.45  Aligned_cols=47  Identities=17%  Similarity=0.449  Sum_probs=35.9

Q ss_pred             cccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .-.|.||.+...     +|-+.  .|+--.|+.|.+--.+.++..||.|+....
T Consensus         6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk   59 (977)
T PLN02195          6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD   59 (977)
T ss_pred             CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence            348999998654     44333  688889999996555577788999988776

>KOG3113|consensus

Probab=80.57  E-value=3.6  Score=31.09  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             CCccccccccccccCcE----EccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ...|+|||-.-.|..-.    .-+|||.|-..-+.+.-   ...|++|.+.+.-
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~  159 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQE  159 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccc
Confidence            45789999887666443    33899999999888764   2359999998763

>KOG0825|consensus

Probab=80.38  E-value=1.1  Score=38.94  Aligned_cols=50  Identities=20%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             ccccccccccccCcE----Ecc---CCChhHHHHHHHHhhc-----CCCcccccccccchhc
Q psy18180         34 SVLCLVCQGILIKPI----KLP---CNHHVCLECLQRICDN-----SNLSCPMCRKRLSIWL   83 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv----~l~---CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~   83 (143)
                      ...|.+|..-+.+|+    ..+   |+|.||..||..|.++     ....|++|...+..|.
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs  157 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS  157 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence            447888887777643    224   9999999999999872     2345889988888773

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3l11_A	115	Crystal Structure Of The Ring Domain Of Rnf168 Leng		1e-14
1z6u_A	150	Np95-Like Ring Finger Protein Isoform B [homo Sapie		2e-05
3fl2_A	124	Crystal Structure Of The Ring Domain Of The E3 Ubiq		1e-04

>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168 Length = 115

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL++P+ LPCNH +C  C Q   + ++L CP CR+R+S W R +   + L++  
Sbjct: 18  CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 77
Query: 97  LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAP 136
           LW  IQK+Y +E   +   Q+     + +Q +   LL+ P
Sbjct: 78  LWTIIQKHYPRECKLRASGQESEEVADDYQPVR--LLSKP 115

>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens] Length = 150

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 34  SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
           S +C+ CQ ++ +P+   C H+VC +CLQR       SCP CR  L 
Sbjct: 78  SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124

>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin- Protein Ligase Uhrf1 Length = 124

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          ++  C+ CQ ++ +PI   C H+VC +CL R       SCP CR  L 
Sbjct: 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-21
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-13
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-09
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	2e-08
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-08
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	3e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	5e-08
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	4e-07
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	5e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	9e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	3e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	6e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	6e-04

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 82.7 bits (204), Expect = 1e-21
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query: 37  CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
           C +C  IL++P+ LPCNH +C  C Q   + ++L CP CR+R+S W R +   + L++  
Sbjct: 18  CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 77

Query: 97  LWNQIQKYYKKEVDQKL 113
           LW  IQK+Y +E   + 
Sbjct: 78  LWTIIQKHYPRECKLRA 94

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 3   DKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQ 62
           + K++ +V   L +            +   ++  C+ CQ ++ +PI   C H+VC +CL 
Sbjct: 21  NAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLD 80

Query: 63  RICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQK 112
           R       SCP CR  L       + +++ +++ L   + + +    + +
Sbjct: 81  RSFRAQVFSCPACRYDLG------RSYAMQVNQPLQTVLNQLFPGYGNGR 124

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 61.2 bits (148), Expect = 5e-13
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 33  DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLL 92
            S +C+ CQ ++ +P+   C H+VC +CLQR       SCP CR  L       +++ ++
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG------QNYIMI 130

Query: 93  IDENLWNQIQKYYKKEVDQK 112
            +E L   +  ++      +
Sbjct: 131 PNEILQTLLDLFFPGYSKGR 150

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
           D   C  C  +L  P +  C H  C  C+  +  +S+  C  C++ + 
Sbjct: 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          C +C    + P+ LPC H  C  C++         C +CR+ + 
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIP 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 17  SKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCR 76
                E  +  N +  + + C++C    I+ + L C H  C  C+          CP+CR
Sbjct: 47  QAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-ECPICR 105

Query: 77  KRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQK 112
           K +     ++K +SL++D N  N++      EV ++
Sbjct: 106 KDI-----KSKTYSLVLD-NCINKMVNNLSSEVKER 135

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 90
               C +C   L + ++ PC H  C  C+ +   ++   CP+  + L    L  +    
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75

Query: 91 LLIDE 95
            I  
Sbjct: 76 REILS 80

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.5 bits (125), Expect = 5e-09
 Identities = 15/63 (23%), Positives = 22/63 (34%)

Query: 18  KMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
           K+  E       +     LC +C          PC H +C  CL    ++    CP CR 
Sbjct: 316 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375

Query: 78  RLS 80
            + 
Sbjct: 376 EIK 378

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN-----LSCPMCRKRLSIW-LRRN 86
          + V C +C  +L +P+   CNH  C  C+    +++       +CP+CR       L+ N
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 47.4 bits (113), Expect = 1e-08
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
          C  CQ     P  LPC H +C  CL+     S + CP+C+    +
Sbjct: 9  CQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKR 78
          + V+C +C  IL KP+ + C H+ CL+C+ +I + S     CP+C+  
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSIW-LRRN 86
          V C +C  +L +P+ L C H  C  CL      S       SCP+CR       +R N
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIW-LRRN 86
            + C +C  ++ +P+   C+H  C  C+ ++ +       CP+C+  ++   L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
              LC  C+ +L +P +  C H  C  CL  I  +   +C  C     
Sbjct: 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 46.5 bits (111), Expect = 5e-08
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN------LSCPMCRKRLSIW-LRR 85
          + V C +C  +L +P+ L C H +C  C+      +        SCP+C    S   L+ 
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70

Query: 86 N 86
          N
Sbjct: 71 N 71

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 33  DSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW--LRRNKDF 89
             ++C +C  +L   +    C H  C +C+     + N  CP CRK+L     LR + +F
Sbjct: 53  SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 90  SLLIDENLWNQIQKYYKKE 108
             LI   ++    +Y   +
Sbjct: 113 DALI-SKIYPSRDEYEAHQ 130

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQR-ICDNSNLSCPMCRKRLS 80
           PD +LCL+C+ I+   + +P C +  C EC++  + ++   +CP C +   
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 43.5 bits (103), Expect = 4e-07
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMC 75
          + V+C +C  IL KP+ + C H+ CL+C+ +I + S     CP+C
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 43.1 bits (102), Expect = 5e-07
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMC 75
              C VC   L +P+ + C H+ C  C+ R  ++      CP+C
Sbjct: 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQR-ICDNSNLSCPMCRKRLSIW--LRRN 86
           PD +LCL+C+ I+   + +P C +  C EC++  + ++   +CP C +       L  N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 87 KDFSLLIDE 95
          K     ++ 
Sbjct: 70 KFLRQAVNN 78

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
               C +C   L + ++ PC H  C  C+ +   ++   CP+  + L 
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
            +LC +C+G LI    +  C H  C  C+ R    SN  CP C   + 
Sbjct: 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVH 61

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 33  DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSL 91
             ++C++C G  I    +  C H  C  C+ R  + S   CP+C  ++    +     ++
Sbjct: 14  PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVH---KTRPLLNI 69

Query: 92  LIDENLWNQIQKY----YKKEVDQK 112
             D+ L + + K     +K E+ ++
Sbjct: 70  RSDKTLQDIVYKLVPGLFKNEMKRR 94

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
           S+ C +C+ IL  P++  C H  C  C+ R        CP CR    
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
          C +C+     P+   C H+ C  C       +   C +C +         K+    + ++
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATP-RCYICDQPTGGIFNPAKELMAKLQKS 76

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 32 PDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSI-WLRRNKDF 89
           +   C +C   L      P C+   C  C++R        CP CR  L +  L   +  
Sbjct: 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 90 SLLIDE 95
            +  +
Sbjct: 80 EEVTQQ 85

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 37 CLVC----QGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRK 77
          C +C        ++P  L C H +C +CL+++  +S   + CP C K
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 25 NSNNTLTPDSVLCLVCQGIL----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
          + +     D V C +C   L    I      C + +C  C  RI  + N  CP CRK
Sbjct: 2  SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 40.3 bits (94), Expect = 9e-06
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 25 NSNNTLTPDSVLCLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRK 77
          +        +V C +C     + ++         C H  C +CL+    N+N +CP CRK
Sbjct: 6  SGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRK 64

Query: 78 RLS 80
          +++
Sbjct: 65 KIN 67

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 32 PDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 87
           D + C +C       + +P C+H+ C  C+++   +    CP C   ++   L+ N+
Sbjct: 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRK-FLSYKTQCPTCCVTVTEPDLKNNR 76

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 33 DSVLCLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
           +V C +C     + ++         C H  C +CL+    N+N +CP CRK+++
Sbjct: 9  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 62

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 37 CLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 88
          C +C        + LPC H  C  C+ R    +  +CP+C+  +   +   + 
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESVVHTIES 59

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 33 DSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 90
            + C  C  IL +P+ L  C H  C  C+          CP+C     I  L+ N+   
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLD 77

Query: 91 LLID 94
           +I 
Sbjct: 78 SMIQ 81

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 37 CLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          C +C     + ++         C H  C +CL+    N+N +CP CRK+++
Sbjct: 6  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 55

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          C +C       + LPC H  C +C+ +  D    +CP+CR +++
Sbjct: 18 CCICMDGR-ADLILPCAHSFCQKCIDKWSDRHR-NCPICRLQMT 59

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 21 NEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRK 77
          +   +       +S  C+VCQ   +  + LPC H   C  C++         CPMCR+
Sbjct: 2  SSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ-----QCPMCRQ 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.87
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.81
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.77
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.76
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.74
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.72
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.72
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.72
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.71
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.67
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.67
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.66
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.64
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.64
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.64
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.64
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.63
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.63
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.62
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.61
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.61
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.61
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.6
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.6
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.59
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.58
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.58
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.57
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.57
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.56
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.56
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.55
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.54
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.54
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.52
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.51
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.5
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.49
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.48
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.47
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.47
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.46
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.46
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.45
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.45
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.45
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.44
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.41
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.41
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.39
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.36
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.35
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.28
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.28
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.25
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.24
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.18
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.18
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.18
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.16
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.14
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.08
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.07
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.0
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.99
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.93
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.67
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.45
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.43
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.33
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	98.0
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.57
3nw0_A	238	Non-structural maintenance of chromosomes element	97.52
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	95.78
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	94.97
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	94.91
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.34
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.94
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	92.24
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	91.85
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	89.0
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.72
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	88.24
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	86.54
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	85.95
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	84.91
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	84.84
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	84.25
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	83.9
1z60_A	59	TFIIH basal transcription factor complex P44 subun	83.83
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	83.2
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	82.76
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	81.15

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.87  E-value=1.4e-23  Score=138.62  Aligned_cols=109  Identities=32%  Similarity=0.700  Sum_probs=83.2

Q ss_pred             CCCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180         26 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY  105 (143)
Q Consensus        26 ~~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  105 (143)
                      ..+....+++.|+||++.+.+|++++|||+||..||.+|+..+...||.||..+..+.......+..+|..+.+++++++
T Consensus         7 ~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A            7 KDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             TTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             ccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            34566778999999999999999999999999999999998767789999999875322223456778999999999999


Q ss_pred             hhHHhhhhcCCchhHHhhhccccccccccCC
Q psy18180        106 KKEVDQKLFDQDDGVWENYHQHISTYLLTAP  136 (143)
Q Consensus       106 ~~~~~~~~~~~e~~~~~~~~~~i~~~~~s~p  136 (143)
                      +.+.+.+..+.+.+++.+.+++.  ..+|.|
T Consensus        87 p~~~~~r~~~~e~e~~~~~~~p~--~~~s~P  115 (115)
T 3l11_A           87 PRECKLRASGQESEEVADDYQPV--RLLSKP  115 (115)
T ss_dssp             HHHHHHHHHC---------CCSC--CCSCC-
T ss_pred             CHHHHHHHhhhhHHHHHHhhCCc--eeccCC
Confidence            99999999999998888888877  455654

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.81  E-value=2.8e-21  Score=129.23  Aligned_cols=74  Identities=26%  Similarity=0.693  Sum_probs=64.9

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHHhh
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQ  111 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~  111 (143)
                      .+++.|+||++.|.+|++++|||+||..||..|+..+...||.||..+..      ...+..|..+.++++.++|.....
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i~~~~p~~~~~  123 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR------SYAMQVNQPLQTVLNQLFPGYGNG  123 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCCCHHHHHHHHHHSTTTTTT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC------CCCCCCCHHHHHHHHHHccccccc
Confidence            46789999999999999999999999999999998666689999999973      356788999999999999976543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.77  E-value=2e-19  Score=110.78  Aligned_cols=70  Identities=16%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhh
Q psy18180         30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK  106 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  106 (143)
                      ...+++.|+||+++|.+|++++|||+||..||.+|+..+...||.||..+..       ..+..|..+.++++.+..
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-------~~l~~n~~l~~~i~~~~~   73 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-------AGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-------CCCEECTTTHHHHHHHHH
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-------hhCccCHHHHHHHHHHHH
Confidence            3466899999999999999999999999999999998766779999999873       355667777777777764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.76  E-value=6.6e-19  Score=111.67  Aligned_cols=75  Identities=23%  Similarity=0.633  Sum_probs=62.0

Q ss_pred             CCCCCCccccccccccccCcEEcc-CCChhHHHHHHHHhhc-CCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDN-SNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY  105 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  105 (143)
                      .....+++.|+||+++|.+|++++ |||+||..||..|+.. +...||.||..+..      ...+..|..+.++++.+.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i~~~~   80 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS------PDALIANKFLRQAVNNFK   80 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC------TTSCEECHHHHHHHHHHH
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC------ccccCcCHHHHHHHHHHH
Confidence            345567899999999999999999 9999999999999974 34679999999742      346778888888888886


Q ss_pred             hhH
Q psy18180        106 KKE  108 (143)
Q Consensus       106 ~~~  108 (143)
                      ...
T Consensus        81 ~~~   83 (92)
T 3ztg_A           81 NET   83 (92)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.74  E-value=3.2e-18  Score=107.31  Aligned_cols=73  Identities=22%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE  108 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  108 (143)
                      ....+++.||||+++|.+||+++|||+||+.||.+|+... ..||.|+..+..       ..+..|..|.++|+.+....
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~-------~~l~pn~~L~~~i~~~~~~~   80 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTE-------SMLEPVPELKEQIQAWMREK   80 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-CCCCCCcCCCCh-------HhcchHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999999999864 569999999873       46778899999999887654


Q ss_pred             H
Q psy18180        109 V  109 (143)
Q Consensus       109 ~  109 (143)
                      .
T Consensus        81 ~   81 (85)
T 2kr4_A           81 Q   81 (85)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.72  E-value=2.4e-18  Score=118.58  Aligned_cols=73  Identities=29%  Similarity=0.714  Sum_probs=63.7

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHHh
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVD  110 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  110 (143)
                      .+++.|+||++.|.+|++++|||+||..||..|+..+...||.||..+..      ...+..|..+.++++.+++....
T Consensus        76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~n~~l~~lv~~~~p~~~~  148 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ------NYIMIPNEILQTLLDLFFPGYSK  148 (150)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCBCHHHHHHHHHHSTTTTT
T ss_pred             ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC------CCCCCCCHHHHHHHHHHhhHhhc
Confidence            45789999999999999999999999999999999776679999999984      23677889999999999986544

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.72  E-value=6.1e-18  Score=109.08  Aligned_cols=71  Identities=21%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      ....+++.||||+++|.+||+++|||+||+.||.+|+.. ...||.|+..+.       ...+..|..|.+.|+.+...
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~~   94 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT-------ESMLEPVPELKEQIQAWMRE   94 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC-------TTSSEECHHHHHHHHHHHHT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC-------hhhceECHHHHHHHHHHHHH
Confidence            344678999999999999999999999999999999985 457999999987       35778899999999988754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.72  E-value=1e-17  Score=107.59  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             CCCCCccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      ....++|.||||+++|.+||+++|| |+||+.||.+|+... ..||.|+..+.       ...+..|..|.+.|+.+...
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLT-------MDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCC-------TTTSEECHHHHHHHHHHHHH
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCC-------hhhceEcHHHHHHHHHHHHH
Confidence            3456799999999999999999999 999999999999864 56999999987       34777899999999988764


Q ss_pred             H
Q psy18180        108 E  108 (143)
Q Consensus       108 ~  108 (143)
                      .
T Consensus        89 ~   89 (98)
T 1wgm_A           89 R   89 (98)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.71  E-value=4.3e-18  Score=115.68  Aligned_cols=65  Identities=25%  Similarity=0.749  Sum_probs=51.2

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      +++.|+||++.|.+|++++|||+||..||..|+... ..||.||+.+...     ..+..++..+..++..
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~~~  116 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK-----TYSLVLDNCINKMVNN  116 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE-----EECHHHHHHHHHHHTT
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC-----CCccchhHHHHHHHHH
Confidence            478999999999999999999999999999999865 4699999998731     1244555555555443

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.7e-17  Score=104.88  Aligned_cols=70  Identities=24%  Similarity=0.480  Sum_probs=59.2

Q ss_pred             CCCccccccccccccCcEEcc-CCChhHHHHHHHHhhcC-----CCcccc--cccc-cchhccccCCCCchhhHHHHHHH
Q psy18180         31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-----NLSCPM--CRKR-LSIWLRRNKDFSLLIDENLWNQI  101 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~l~~~i  101 (143)
                      ..+++.||||+++|.+||+++ |||+||+.||..|+..+     ...||.  |+.. +.       ..++..|..|..+|
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-------~~~L~pn~~L~~~I   76 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-------KSDLIQDEALRRAI   76 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-------GGGEEECHHHHHHH
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-------HhhCcCCHHHHHHH
Confidence            456899999999999999996 99999999999999853     457999  8876 55       34778899999999


Q ss_pred             HHHhhh
Q psy18180        102 QKYYKK  107 (143)
Q Consensus       102 ~~~~~~  107 (143)
                      +.+...
T Consensus        77 ~~~~~~   82 (94)
T 2yu4_A           77 ENHNKK   82 (94)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            988654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.67  E-value=2e-17  Score=115.36  Aligned_cols=73  Identities=29%  Similarity=0.585  Sum_probs=60.4

Q ss_pred             CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180         30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE  108 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  108 (143)
                      ...+++.|+||++.|.+|+++ +|||+||..||..|+..+...||.||..+..      ...+..|..+.+++..+++..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~~~~l~~~i~~~~~~~  123 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS------KRSLRPDPNFDALISKIYPSR  123 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS------GGGEEECHHHHHHHHHHC---
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC------cccCCcCHHHHHHHHHHHcch
Confidence            345678999999999999988 9999999999999999766779999999863      345677888999999887753

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.66  E-value=7.8e-17  Score=105.04  Aligned_cols=73  Identities=22%  Similarity=0.547  Sum_probs=59.9

Q ss_pred             CCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180         32 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE  108 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  108 (143)
                      .+++.|+||++.+.+|+++ +|||+||..||..|+..+ ..||.||..+..   ......+..|..+.++++.+++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~---~~~~~~l~~n~~l~~~i~~~~~~~   86 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHK---TRPLLNIRSDKTLQDIVYKLVPGL   86 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCS---SCGGGGEEECHHHHHHHHHHSTTH
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccc---cCcccccCcCHHHHHHHHHHhhhH
Confidence            4589999999999999998 999999999999999865 569999999873   111125667888999999888753

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.66  E-value=2.4e-17  Score=106.21  Aligned_cols=50  Identities=24%  Similarity=0.671  Sum_probs=45.4

Q ss_pred             CCccccccccccccCcEE-ccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+++.|+||++.|.+|++ ++|||+||..||.+|+......||.||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            348999999999999999 89999999999999999765679999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.64  E-value=2.1e-16  Score=117.80  Aligned_cols=72  Identities=13%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      ....+.+.||||.++|.+||+++|||+||+.||.+|+..++..||.|+..+.       ...+..|..|.+.|+.+...
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-------~~~l~~n~~l~~~i~~~~~~  274 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-------QEQLIPNLAMKEVIDAFISE  274 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-------GGGCEECHHHHHHHHHHHTT
T ss_pred             CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-------hhcCcccHHHHHHHHHHHHH
Confidence            3455789999999999999999999999999999999865556999999987       34677899999999988754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=8.8e-17  Score=99.60  Aligned_cols=51  Identities=18%  Similarity=0.509  Sum_probs=45.3

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ....+.+.|+||++.+.+|++++|||+||..|+.+|+... ..||+||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~   60 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG   60 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence            4455688999999999999999999999999999999864 46999999986

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=102.39  Aligned_cols=68  Identities=18%  Similarity=0.396  Sum_probs=56.6

Q ss_pred             CCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         32 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      .+++.|+||++.+.+|+++ +|||+||..|+.+|+..+ ..||.||..+..       ..+..|..+.++++.+...
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~-------~~l~~n~~l~~~i~~~~~~   88 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTE-------PDLKNNRILDELVKSLNFA   88 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCCh-------hhCCcCHHHHHHHHHHHHH
Confidence            3478999999999999998 899999999999999864 469999999873       3566677787877777543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.64  E-value=5.8e-18  Score=104.26  Aligned_cols=53  Identities=28%  Similarity=0.731  Sum_probs=46.7

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcC------CCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS------NLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~   81 (143)
                      ....+++.|+||++.+.+|++++|||+||..|+.+|+...      ...||.||..+..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            4456789999999999999999999999999999999852      5679999999873

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2e-16  Score=94.31  Aligned_cols=52  Identities=23%  Similarity=0.627  Sum_probs=46.6

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ....+++.|+||++.+.+|+.++|||+||..|+.+|+..+...||.||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            4456789999999999999999999999999999999755667999999887

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.63  E-value=3.3e-16  Score=110.38  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=61.3

Q ss_pred             CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      ...+.+.||||+++|.+||+++|||+||+.||..|+..++..||.|+..+..       ..+..|..|.++++.+...
T Consensus       102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-------~~L~pN~~Lk~~Ie~~~~~  172 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-------DQLIPNLAMKEVIDAFIQE  172 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred             CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-------hhCcchHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999998644469999999873       4677889999999988643

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.7e-16  Score=94.25  Aligned_cols=52  Identities=31%  Similarity=0.910  Sum_probs=46.1

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhh--cCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD--NSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~   80 (143)
                      ....+++.|+||++.+.+|+.++|||+||..|+..|+.  .+...||.||+.+.
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            44567899999999999999999999999999999997  34567999999887

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.61  E-value=3.6e-16  Score=95.29  Aligned_cols=53  Identities=30%  Similarity=0.825  Sum_probs=46.1

Q ss_pred             CCCCCCccccccccccccCcEEcc-CCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCRKRLS   80 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   80 (143)
                      .....+++.|+||++.|.+|++++ |||+||..||.+|+... ...||.||+.+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            344567899999999999999999 99999999999999853 357999999865

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.61  E-value=2.7e-16  Score=104.05  Aligned_cols=70  Identities=20%  Similarity=0.416  Sum_probs=56.0

Q ss_pred             CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      .....+++.|+||++.+.+|++++|||+||..||..|+..+...||.||..+..       ..+..+..+.+.+..+
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-------~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-------NQLFPDNFAKREILSL   81 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-------GGCEECHHHHHHHHTS
T ss_pred             ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-------HhcccCHHHHHHHccc
Confidence            345677899999999999999999999999999999998766579999999873       2344555555555544

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=8.4e-16  Score=90.69  Aligned_cols=48  Identities=33%  Similarity=0.958  Sum_probs=42.1

Q ss_pred             CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc--CCCccccc
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC   75 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~--~~~~CP~C   75 (143)
                      .....+++.|+||++.+.+|++++|||+||..||.+|+..  +...||.|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456678999999999999999999999999999999984  45679988

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=8.3e-17  Score=100.07  Aligned_cols=53  Identities=26%  Similarity=0.751  Sum_probs=46.7

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcC-----CCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~   81 (143)
                      ....+++.|+||++.+.+|+.++|||+||..|+..|+...     ...||.||..+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4456789999999999999999999999999999999862     5679999999873

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4.6e-16  Score=94.02  Aligned_cols=54  Identities=24%  Similarity=0.641  Sum_probs=47.4

Q ss_pred             CCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         27 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        27 ~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ......+++.|+||++.+.+|+.++|||.||..|+.+|+..+ ..||+||..+..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~   61 (71)
T 2d8t_A            8 NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE   61 (71)
T ss_dssp             CCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred             CcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence            345567789999999999999999999999999999999865 569999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=9.5e-16  Score=92.88  Aligned_cols=53  Identities=28%  Similarity=0.625  Sum_probs=46.3

Q ss_pred             CCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....++++.|+||++.+.+|+++ +|||+||..||.+|+... ..||.||+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~   62 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCS
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCc
Confidence            34456789999999999999997 999999999999999764 469999999874

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.58  E-value=4.5e-16  Score=102.85  Aligned_cols=65  Identities=29%  Similarity=0.522  Sum_probs=54.9

Q ss_pred             CccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      +++.|+||++.|.+|+++ +|||+||..||..|+.   ..||.||..+.       ...+..|..+.+++..+...
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-------~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-------IQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-------CSSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-------cccccccHHHHHHHHHHHHH
Confidence            479999999999999999 9999999999999987   56999999986       34666777777777766443

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.58  E-value=3.2e-15  Score=97.62  Aligned_cols=48  Identities=21%  Similarity=0.771  Sum_probs=43.5

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   81 (143)
                      .+.|+||++.+.+|++++|||+||..|+..|+..+  ...||.||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            78999999999999999999999999999999853  3579999999874

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-16  Score=99.08  Aligned_cols=53  Identities=30%  Similarity=0.740  Sum_probs=46.5

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc-----CCCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN-----SNLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~   81 (143)
                      ....+++.|+||++.+.+|+.++|||+||..|+..|+..     +...||.||..+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            445678999999999999999999999999999999875     35679999999873

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.8e-15  Score=93.85  Aligned_cols=54  Identities=28%  Similarity=0.719  Sum_probs=47.1

Q ss_pred             CCCCCCccccccccccccC----cEEccCCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180         28 NTLTPDSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI   81 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   81 (143)
                      .....+.+.|+||++.|.+    |+.++|||+||..|+.+|+...  ...||.||+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            4456678999999999998    9999999999999999999864  4679999998863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.56  E-value=1.5e-15  Score=100.06  Aligned_cols=50  Identities=30%  Similarity=0.671  Sum_probs=45.5

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+++.|+||++.+.+|++++|||+||..||.+|+...+..||.||..+..
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            45789999999999999999999999999999998755679999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.56  E-value=1.3e-15  Score=90.41  Aligned_cols=48  Identities=25%  Similarity=0.592  Sum_probs=42.8

Q ss_pred             Cccccccccc-cccCc----EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQG-ILIKP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~-~~~~p----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      +++.|+||++ .+.+|    +.++|||+||..|+.+|+..+...||.||+.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            4689999999 99998    467999999999999998766677999999987

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=3.9e-15  Score=86.18  Aligned_cols=48  Identities=27%  Similarity=0.758  Sum_probs=41.5

Q ss_pred             CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc--CCCccccc
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC   75 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~--~~~~CP~C   75 (143)
                      .....+++.|+||++.+.+|+.++|||+||..||.+|+..  ....||+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3445678899999999999999999999999999999764  45679987

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.54  E-value=1.7e-15  Score=91.22  Aligned_cols=51  Identities=29%  Similarity=0.726  Sum_probs=44.8

Q ss_pred             CCCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ...+++.|+||++.+.+|       +.++|||+||..|+.+|+.... .||.||+.+..
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   63 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH   63 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccCh
Confidence            345688999999999988       8889999999999999998654 69999999873

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.4e-15  Score=89.31  Aligned_cols=53  Identities=26%  Similarity=0.667  Sum_probs=45.6

Q ss_pred             CCCCCCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         27 NNTLTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        27 ~~~~~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ......+++.|+||++.+.+|       +.++|||.||..|+.+|+... ..||+||+.+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   67 (69)
T 2ea6_A            8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKIN   67 (69)
T ss_dssp             CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCC
T ss_pred             cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccC
Confidence            344566789999999999987       888999999999999999874 46999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.52  E-value=2.4e-15  Score=102.46  Aligned_cols=51  Identities=25%  Similarity=0.614  Sum_probs=46.2

Q ss_pred             CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..++++.|+||++++.+|++++|||+||..||.+|+..+...||.||..+.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            456789999999999999999999999999999999877667999999764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.51  E-value=5.6e-15  Score=103.38  Aligned_cols=69  Identities=20%  Similarity=0.412  Sum_probs=54.7

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      ....+++.|+||++++.+|++++|||+||..|+.+|+..+...||.||..+..       ..+..+..+.+.+..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-------~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-------NQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-------GGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-------hhhhhhHHHHHHHhhc
Confidence            45677899999999999999999999999999999998655579999999873       2233445555555443

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.50  E-value=1.3e-14  Score=89.27  Aligned_cols=52  Identities=33%  Similarity=0.623  Sum_probs=43.5

Q ss_pred             CCCCcccccccccccc--CcEEcc--CCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILI--KPIKLP--CNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~--~pv~l~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..++++.||||++.+.  ++..++  |||+||..|+.+++..+...||.||+.+..
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3567899999999885  455555  999999999999987666789999999874

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.49  E-value=7.6e-14  Score=103.04  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhcccccccc-------cCCCCCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhc-CCCcccc--
Q psy18180          6 VFRDVSLLLVNSKMDNED-------CNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDN-SNLSCPM--   74 (143)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~-~~~~CP~--   74 (143)
                      .|+.+.-.+.+....-++       ..-.......++.||||+++|.+||+. .|||+||+.||.+|+.. +...||.  
T Consensus       146 ~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtG  225 (267)
T 3htk_C          146 ILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAA  225 (267)
T ss_dssp             HHHHHHHHHHCTTBCCCCCSSTTCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGG
T ss_pred             HHHHccccccCCCCCCCCCCCCCCCccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCccc
Confidence            455555555554432221       111233456789999999999999985 99999999999999985 3467999  


Q ss_pred             cccccchhccccCCCCchhhHHHHHHHHHHhh
Q psy18180         75 CRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK  106 (143)
Q Consensus        75 Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  106 (143)
                      |++.+.       ..++..|..|..+++.+..
T Consensus       226 Cr~~l~-------~~dL~pN~~L~~lve~~k~  250 (267)
T 3htk_C          226 CSQVVS-------MRDFVRDPIMELRCKIAKM  250 (267)
T ss_dssp             CSCEEC-------GGGEEECHHHHHHHHHHHH
T ss_pred             ccCcCc-------hhhCCcCHHHHHHHHHHHH
Confidence            999887       3477788888888877643

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.48  E-value=8.6e-15  Score=92.59  Aligned_cols=50  Identities=26%  Similarity=0.650  Sum_probs=43.2

Q ss_pred             CCCCccccccccccccC---cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...++..|+||++.|..   ++.++|||.||..||..|+.... .||+||+.+.
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~   88 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP   88 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSS
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCC
Confidence            34567899999999886   77789999999999999998654 6999999876

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.47  E-value=9.6e-15  Score=86.03  Aligned_cols=48  Identities=29%  Similarity=0.713  Sum_probs=42.4

Q ss_pred             CccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +++.|+||++.+.+|       +.++|||.||..|+.+|+... ..||.||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCc
Confidence            478999999999887       788999999999999999874 469999999873

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.47  E-value=4e-14  Score=84.80  Aligned_cols=52  Identities=27%  Similarity=0.592  Sum_probs=43.4

Q ss_pred             CCCCCcccccccccccc---CcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....++..|+||++.+.   .++.++|||.||..|+.+|+..+. .||+||+.+..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   63 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEA   63 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccC
Confidence            34556789999999885   457789999999999999998755 59999999873

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.46  E-value=2.5e-14  Score=81.92  Aligned_cols=48  Identities=33%  Similarity=0.681  Sum_probs=41.4

Q ss_pred             CCccccccccccccC---cEEcc-CCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIK---PIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~---pv~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      +++..|+||++.+.+   ++.++ |||.||..|+.+|+..+ ..||.||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence            457899999999987   77786 99999999999999865 46999998764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.46  E-value=6.3e-15  Score=85.12  Aligned_cols=46  Identities=30%  Similarity=0.738  Sum_probs=40.9

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+++.|+||++.+.+|++++|||+||..|+..|    ...||.||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            468899999999999999999999999999873    4569999999874

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.45  E-value=2.5e-14  Score=81.89  Aligned_cols=47  Identities=26%  Similarity=0.603  Sum_probs=41.1

Q ss_pred             CccccccccccccC----cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++..|+||++.+.+    ++.++|||.||..|+.+|+..+ ..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46799999999865    7778999999999999999876 56999998874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=3e-14  Score=87.34  Aligned_cols=53  Identities=30%  Similarity=0.565  Sum_probs=44.3

Q ss_pred             CCCCCCccccccccccccCc---EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         28 NTLTPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .....+++.|+||++.|.++   +.++|||.||..||.+|+... ..||+||+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~   64 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCC
Confidence            34456688999999999865   456999999999999999865 469999999874

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.6e-14  Score=85.89  Aligned_cols=51  Identities=27%  Similarity=0.737  Sum_probs=44.3

Q ss_pred             CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....+++.|+||++.+.+ +.++|||.||..|+.+|+.. ...||.||+.+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence            345668899999999999 88999999999999999985 4569999998873

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.44  E-value=2.7e-14  Score=85.31  Aligned_cols=49  Identities=24%  Similarity=0.641  Sum_probs=42.6

Q ss_pred             CCccccccccccccCc-EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .++..|+||++.+.+| +.++|||.||..|+.+|+..+. .||.||+.+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence            3467999999999997 6789999999999999998654 69999998874

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5.3e-14  Score=85.69  Aligned_cols=50  Identities=28%  Similarity=0.701  Sum_probs=43.1

Q ss_pred             CCCCccccccccccccCc---EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...++..|+||++.+..+   +.++|||.||..||.+|+..+. .||+||+.+.
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~   71 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSG   71 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCC
Confidence            345678999999999877   6679999999999999998754 6999999886

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9e-14  Score=84.36  Aligned_cols=52  Identities=25%  Similarity=0.494  Sum_probs=43.4

Q ss_pred             CCCCCccccccccccccCcEEc---cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ....++..|+||++.+.++..+   +|||.||..||.+|+.... .||+||+.+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccc
Confidence            3445678999999999866544   9999999999999998755 69999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.39  E-value=8.5e-14  Score=93.00  Aligned_cols=49  Identities=31%  Similarity=0.770  Sum_probs=44.0

Q ss_pred             CCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         32 PDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+++.|+||++.|.+|       +.++|||+||..||.+|+..+. .||.||+.+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcc
Confidence            4579999999999998       8899999999999999998654 69999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.36  E-value=3.2e-13  Score=88.46  Aligned_cols=48  Identities=27%  Similarity=0.567  Sum_probs=40.2

Q ss_pred             ccccccccccccCcE------------------EccCCChhHHHHHHHHhhc----CCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPI------------------KLPCNHHVCLECLQRICDN----SNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv------------------~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~   81 (143)
                      +..|+||++.|.+|.                  .++|||.||..||..|+..    ....||+||+.+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            569999999997664                  6799999999999999952    34579999998864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.35  E-value=1.6e-13  Score=83.53  Aligned_cols=44  Identities=30%  Similarity=0.813  Sum_probs=40.1

Q ss_pred             CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +++.|+||++.+.+|+.++|||. ||..|+..|     ..||.||+.+..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            37899999999999999999999 999999988     469999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.3e-12  Score=79.70  Aligned_cols=48  Identities=21%  Similarity=0.596  Sum_probs=40.2

Q ss_pred             CCccccccccccccC--------------cEEc-cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIK--------------PIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~--------------pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .++..|+||++.|.+              ++.+ +|||.||..||.+|+..+. .||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~   75 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWV   75 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcc
Confidence            356789999999876              4555 5999999999999998765 6999999876

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.28  E-value=2.7e-12  Score=99.87  Aligned_cols=48  Identities=27%  Similarity=0.612  Sum_probs=43.4

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ...|+||++.+.+|+.++|||.||..|+..|+......||.||..+..
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            479999999999999999999999999999998555679999999874

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.25  E-value=1.8e-12  Score=76.67  Aligned_cols=49  Identities=22%  Similarity=0.623  Sum_probs=42.8

Q ss_pred             CCCccccccccccccCcEEc--cCCCh-hHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..++..|+||++.+.+++.+  ||||. ||..|+.+|+..+ ..||+||+.+.
T Consensus         5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~   56 (64)
T 2vje_A            5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ   56 (64)
T ss_dssp             CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred             CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence            34577999999999999987  99999 8999999998754 45999999886

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.4e-12  Score=77.73  Aligned_cols=44  Identities=30%  Similarity=0.813  Sum_probs=38.8

Q ss_pred             CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +++.|+||++.+.+|+.++|||. ||..|+.+.     ..||.||..+..
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            36799999999999999999999 999999753     469999999873

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.18  E-value=5e-12  Score=84.29  Aligned_cols=50  Identities=30%  Similarity=0.747  Sum_probs=43.9

Q ss_pred             CCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..+.+.|+||++.+.++       +.++|||.||..|+.+|+.... .||.||..+..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCCh
Confidence            45688999999999887       8889999999999999998754 69999999873

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.18  E-value=6.2e-12  Score=77.40  Aligned_cols=43  Identities=37%  Similarity=0.905  Sum_probs=39.3

Q ss_pred             ccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +..|+||++.+.+++.+||||. ||..|+..|.     .||.||..+..
T Consensus        18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            6799999999999999999999 9999998763     69999999875

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.18  E-value=7.2e-12  Score=73.84  Aligned_cols=48  Identities=23%  Similarity=0.578  Sum_probs=41.9

Q ss_pred             CccccccccccccCcEEc--cCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+..|+||++.+.+++.+  ||||. ||..|+.+|+..+ ..||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence            356899999999999887  99998 9999999998765 469999998863

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.16  E-value=1.9e-11  Score=79.27  Aligned_cols=47  Identities=19%  Similarity=0.463  Sum_probs=39.5

Q ss_pred             CccccccccccccCc------------------EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKP------------------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p------------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++..|+||++.|.++                  +.++|||.||..||.+|+... ..||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence            466899999998865                  346899999999999999874 46999999865

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.14  E-value=1.6e-11  Score=77.83  Aligned_cols=46  Identities=28%  Similarity=0.606  Sum_probs=39.0

Q ss_pred             CccccccccccccCcEEc---cCCChhHHHHHHHHhhc-------CCCcccc--cccc
Q psy18180         33 DSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDN-------SNLSCPM--CRKR   78 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~   78 (143)
                      +.+.|+||++.+..|..+   +|||.||..|+..++..       ....||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            478999999999988654   79999999999999862       2357999  9988

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.08  E-value=3.1e-11  Score=70.67  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=42.1

Q ss_pred             ccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .+.|+|+++++.+||.+ ++||+|++.||.+|+..++ .||..+..+..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCCh
Confidence            58999999999999999 8999999999999998655 49999998874

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=5.4e-11  Score=71.11  Aligned_cols=46  Identities=35%  Similarity=0.803  Sum_probs=40.1

Q ss_pred             CCCccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ..++..|+||++...+++.+||||. ||..|+...     ..||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhc
Confidence            3457899999999999999999999 999999852     469999999874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.1e-10  Score=70.63  Aligned_cols=52  Identities=25%  Similarity=0.600  Sum_probs=42.7

Q ss_pred             CCCCcccccccccccc--CcEEccCC-----ChhHHHHHHHHhhcC-CCcccccccccch
Q psy18180         30 LTPDSVLCLVCQGILI--KPIKLPCN-----HHVCLECLQRICDNS-NLSCPMCRKRLSI   81 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~--~pv~l~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~   81 (143)
                      ...++..|.||++.+.  +++.+||.     |.|+..||.+|+... ...||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3455679999998774  67888996     999999999999854 3679999999874

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.99  E-value=5.9e-11  Score=91.45  Aligned_cols=44  Identities=32%  Similarity=0.802  Sum_probs=40.1

Q ss_pred             CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +++.|+||++.+.+|+.+||||. ||..|+..|     ..||.||..+..
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            57899999999999999999999 999999987     469999999873

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.93  E-value=1.1e-10  Score=76.77  Aligned_cols=47  Identities=19%  Similarity=0.529  Sum_probs=0.8

Q ss_pred             CccccccccccccCc-----------------EE-ccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILIKP-----------------IK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~~p-----------------v~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++-.|+||++.|.++                 +. ++|+|.||..||.+|+.... .||+||+.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE  111 (117)
T ss_dssp             CC----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeee
Confidence            346899999998763                 22 48999999999999998754 5999999865

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=3.3e-08  Score=59.77  Aligned_cols=51  Identities=20%  Similarity=0.581  Sum_probs=41.0

Q ss_pred             CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180         30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLS   80 (143)
Q Consensus        30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   80 (143)
                      ..+....|.||.+++..-..- .|+|.|+..||.+|++.. ...||.|+....
T Consensus        11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            344567999999999854444 799999999999999854 256999998876

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.45  E-value=1.2e-07  Score=54.98  Aligned_cols=49  Identities=22%  Similarity=0.462  Sum_probs=39.8

Q ss_pred             CCccccccccccccCcEEccCC--C---hhHHHHHHHHhh-cCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCN--H---HVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~Cg--H---~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      ++...|.||++...++..+||.  +   .|+..|+.+|+. +++..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3466899999887777777865  4   799999999998 34678999998875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.43  E-value=1.1e-07  Score=60.06  Aligned_cols=47  Identities=21%  Similarity=0.498  Sum_probs=38.0

Q ss_pred             ccccccccccCc-EEccCCChhHHHHHHHHhhcCCCcccccccccchh
Q psy18180         36 LCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW   82 (143)
Q Consensus        36 ~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   82 (143)
                      .|++|.-.+..- ..+||.|.||.+|+..|..++...||.|+..+...
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            578887766644 35699999999999999887767799999988753

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.33  E-value=1.5e-07  Score=72.01  Aligned_cols=50  Identities=22%  Similarity=0.559  Sum_probs=39.2

Q ss_pred             CCccccccccccccC----cEE----ccCCChhHHHHHHHHhhcCC----------Ccccccccccch
Q psy18180         32 PDSVLCLVCQGILIK----PIK----LPCNHHVCLECLQRICDNSN----------LSCPMCRKRLSI   81 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~----pv~----l~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   81 (143)
                      +....|+||+..+.+    |..    ..|||.|+..|+.+|+....          ..||.||+.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            456689999998875    322    36999999999999997311          359999999874

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=98.00  E-value=2.7e-06  Score=72.60  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             CCCccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHH
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEV  109 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  109 (143)
                      ..++|.|||-.+++.+||+++-| ++|=+..|.+|+..+. +||.-|.++.       ...+..|..|...|+.|..+..
T Consensus       888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~-------~~~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLK-------LEDVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCC-------GGGCEECHHHHHHHHHHHHHHH
T ss_pred             CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCC-------cccccccHHHHHHHHHHHHHHH
Confidence            45699999999999999999998 6999999999998754 6999999887       3467789999999999987654


Q ss_pred             h
Q psy18180        110 D  110 (143)
Q Consensus       110 ~  110 (143)
                      .
T Consensus       960 ~  960 (968)
T 3m62_A          960 E  960 (968)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.57  E-value=2.1e-05  Score=49.74  Aligned_cols=33  Identities=30%  Similarity=0.691  Sum_probs=28.1

Q ss_pred             Ccccccccccc-ccCcEE--ccCCChhHHHHHHHHh
Q psy18180         33 DSVLCLVCQGI-LIKPIK--LPCNHHVCLECLQRIC   65 (143)
Q Consensus        33 ~~~~C~IC~~~-~~~pv~--l~CgH~fC~~Ci~~~~   65 (143)
                      +++.|+||.+. +.+|+.  +.|+|+||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            46899999975 678887  8999999999999843

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.52  E-value=0.00013  Score=53.31  Aligned_cols=47  Identities=21%  Similarity=0.637  Sum_probs=38.9

Q ss_pred             ccccccccccccCcEEc-cCCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180         34 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~   80 (143)
                      -..|.||.++...-+.- .|+|.|+..|+.+|+... ...||.|+...+
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            56899999999865555 499999999999999743 457999998765

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=95.78  E-value=0.0085  Score=36.13  Aligned_cols=38  Identities=18%  Similarity=0.542  Sum_probs=30.7

Q ss_pred             CCCCCccccccccccccCcEEccC----CChhHHHHHHHHhh
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKLPC----NHHVCLECLQRICD   66 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l~C----gH~fC~~Ci~~~~~   66 (143)
                      ......+.|.+|.+-+.+-..+.|    +|.||..|-+..++
T Consensus        10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk   51 (93)
T 2cs3_A           10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   51 (93)
T ss_dssp             SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence            334567899999999998766544    69999999998887

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=94.97  E-value=0.023  Score=34.88  Aligned_cols=48  Identities=21%  Similarity=0.586  Sum_probs=37.8

Q ss_pred             Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ..-.|.||.+..-     ++.+.  .|+-..|+.|.+--.+.++..||.|...+.
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            4569999998754     23332  688889999999888888889999998876

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.023  Score=43.85  Aligned_cols=66  Identities=21%  Similarity=0.380  Sum_probs=48.6

Q ss_pred             CCccccccccccccCcEEc-cCCChhHHHH--HHHH-hhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180         32 PDSVLCLVCQGILIKPIKL-PCNHHVCLEC--LQRI-CDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY  104 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~C--i~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~  104 (143)
                      .-.+.||+-...+..|+.- .|.|.-|.+-  +-.+ .......||+|.+.+.       ..++.+|..+.+++...
T Consensus       247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-------~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-------LENLAISEFVDDILQNC  316 (371)
T ss_dssp             EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-------GGGEEEBHHHHHHHTTS
T ss_pred             EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-------HHHeeEcHHHHHHHHhc
Confidence            4468999999999999975 7999966432  2221 2255688999999887       45788888888776644

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.34  E-value=0.045  Score=42.13  Aligned_cols=66  Identities=21%  Similarity=0.481  Sum_probs=48.3

Q ss_pred             CCCccccccccccccCcEEc-cCCChhHHHH--HHHHh-hcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180         31 TPDSVLCLVCQGILIKPIKL-PCNHHVCLEC--LQRIC-DNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK  103 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~C--i~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~  103 (143)
                      ..-.+.||+-...+..|+.- .|.|.-|.+-  +-.+. ......||+|.+.+.       ..++.+|..+.+++..
T Consensus       212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-------~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-------YESLILDGLFMEILND  281 (360)
T ss_dssp             EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-------GGGEEEBHHHHHHHTT
T ss_pred             eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-------HHHeEEcHHHHHHHHh
Confidence            34477999999999999975 8999966432  12221 245688999999887       4578888888877754

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=92.24  E-value=0.13  Score=29.19  Aligned_cols=49  Identities=31%  Similarity=0.546  Sum_probs=34.2

Q ss_pred             CCCCCCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR   78 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~   78 (143)
                      ......+..|.+|.+.  .-+.+  .|...|+..|+..-+.   .+...||.|...
T Consensus         5 ~~~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            5 SYETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCSSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             cccCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3345557899999973  22333  6889999999987443   456789999653

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=91.85  E-value=0.021  Score=37.28  Aligned_cols=51  Identities=18%  Similarity=0.478  Sum_probs=29.8

Q ss_pred             CCCCCccccccccccccCc----EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~p----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++..+...|..|...|.--    .--.||..||..|....... ...|-.|-..+.
T Consensus        14 ~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~~   68 (120)
T 1y02_A           14 SPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFRA   68 (120)
T ss_dssp             ------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHHH
T ss_pred             cCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHHh
Confidence            4555667999999887632    12379999999997665443 234888865443

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=89.00  E-value=0.3  Score=28.17  Aligned_cols=44  Identities=18%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             ccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180         34 SVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL   79 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~   79 (143)
                      +-.|.||.+-= + +.+  .|...|+..|+...+.   .+...||.|....
T Consensus        12 ~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           12 GARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45799998632 2 333  6999999999976665   3567899997654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.72  E-value=0.048  Score=27.42  Aligned_cols=16  Identities=19%  Similarity=0.364  Sum_probs=11.7

Q ss_pred             CccccccccccccCcE
Q psy18180         33 DSVLCLVCQGILIKPI   48 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv   48 (143)
                      +.|.||+|...+..+.
T Consensus         4 EGFiCP~C~~~l~s~~   19 (34)
T 3mjh_B            4 EGFICPQCMKSLGSAD   19 (34)
T ss_dssp             EEEECTTTCCEESSHH
T ss_pred             cccCCcHHHHHcCCHH
Confidence            4688888887777653

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=88.24  E-value=0.2  Score=29.43  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=37.5

Q ss_pred             cCCCCCCCCCccccccccccc---cCcEEc--cCCChhHHHHHHHHhh-cCCCccccccccc
Q psy18180         24 CNSNNTLTPDSVLCLVCQGIL---IKPIKL--PCNHHVCLECLQRICD-NSNLSCPMCRKRL   79 (143)
Q Consensus        24 ~~~~~~~~~~~~~C~IC~~~~---~~pv~l--~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~   79 (143)
                      +..+.+...++..|.||.+.-   .+..++  .|.-.|...|+..-.. .+...||.|....
T Consensus         6 ~~~~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~   67 (71)
T 2ku3_A            6 HHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR   67 (71)
T ss_dssp             ----CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcC
Confidence            345677788899999998753   233443  6999999999874322 4567899996643

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=86.54  E-value=0.67  Score=28.11  Aligned_cols=45  Identities=22%  Similarity=0.495  Sum_probs=31.4

Q ss_pred             CCccccccccccccCcEEc---cCCChhHHHHHHHHhh---------------cCCCccccccc
Q psy18180         32 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD---------------NSNLSCPMCRK   77 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~---------------~~~~~CP~Cr~   77 (143)
                      ..|-.|.||...-.. ..+   -|+-.|+..|+++.-.               .....||.|..
T Consensus        13 ~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen   75 (89)
T 1wil_A           13 VNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence            357799999864433 333   4899999999999611               23468999943

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=85.95  E-value=0.29  Score=26.44  Aligned_cols=43  Identities=28%  Similarity=0.586  Sum_probs=28.0

Q ss_pred             cccccccccc-CcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180         36 LCLVCQGILI-KPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR   78 (143)
Q Consensus        36 ~C~IC~~~~~-~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~   78 (143)
                      .|.||...-. +..++  .|...|+..|+..-+.   .+...||.|...
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~   50 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence            4778876432 22222  6888999999965443   345679999653

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=84.91  E-value=0.26  Score=28.98  Aligned_cols=49  Identities=14%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCccccccccccccCc-EEc--cCCChhHHHHHHHHhh---cCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIKP-IKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~p-v~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~   80 (143)
                      .+...|+||......- .+.  .|...|+..|+.-...   .+...||.|...+.
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            4566899999875432 232  6888999999865443   24577999977654

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=84.84  E-value=0.96  Score=30.16  Aligned_cols=45  Identities=20%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHh----------hcCCCccccccc
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----------DNSNLSCPMCRK   77 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~   77 (143)
                      .+..|.+|.+-=.--.--.|-.+||..|+..-+          ..+...||.|+.
T Consensus        62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            356888888632210111799999999999654          245778999974

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=84.25  E-value=0.33  Score=28.45  Aligned_cols=31  Identities=23%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CccccccccccccCcE----EccCCChhHHHHHHH
Q psy18180         33 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQR   63 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~   63 (143)
                      ++-.|.+|...|.--.    --.||..||..|...
T Consensus        10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~   44 (73)
T 1vfy_A           10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   44 (73)
T ss_dssp             CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence            3458999998876321    127999999999754

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=83.90  E-value=0.55  Score=28.27  Aligned_cols=32  Identities=19%  Similarity=0.488  Sum_probs=23.4

Q ss_pred             CccccccccccccCcE----EccCCChhHHHHHHHH
Q psy18180         33 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI   64 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~   64 (143)
                      +...|.+|...|.--.    --.||+.||..|....
T Consensus        20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~   55 (84)
T 1z2q_A           20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR   55 (84)
T ss_dssp             TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred             CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence            4558999998876321    1379999999997654

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=83.83  E-value=0.92  Score=25.59  Aligned_cols=39  Identities=33%  Similarity=0.756  Sum_probs=27.1

Q ss_pred             ccccccccccCcEEc---cCCChhHHHHHHHHhhcCCCccccc
Q psy18180         36 LCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMC   75 (143)
Q Consensus        36 ~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~~CP~C   75 (143)
                      .|--|+..+.+....   .|++.||.+|=. ++...--.||-|
T Consensus        17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC   58 (59)
T 1z60_A           17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC   58 (59)
T ss_dssp             EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred             cccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence            588899888665433   699999999943 333333459987

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=83.20  E-value=0.76  Score=32.88  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=26.4

Q ss_pred             CCCCCCccccccccccccCc----EEccCCChhHHHHHHHH
Q psy18180         28 NTLTPDSVLCLVCQGILIKP----IKLPCNHHVCLECLQRI   64 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~p----v~l~CgH~fC~~Ci~~~   64 (143)
                      ++...++-.|.+|...|.--    .--.||+.||..|....
T Consensus       158 ~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~  198 (226)
T 3zyq_A          158 APDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY  198 (226)
T ss_dssp             CCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred             ccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence            44455667999999877622    12379999999997654

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=82.76  E-value=0.095  Score=35.54  Aligned_cols=45  Identities=20%  Similarity=0.485  Sum_probs=31.5

Q ss_pred             Ccccccccccccc---CcEE--ccCCChhHHHHHHHHhh-cCCCcccccccc
Q psy18180         33 DSVLCLVCQGILI---KPIK--LPCNHHVCLECLQRICD-NSNLSCPMCRKR   78 (143)
Q Consensus        33 ~~~~C~IC~~~~~---~pv~--l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~   78 (143)
                      ++-.|.+|...|.   ++-.  ..|.|.+|..|-. +.. .....|-+|++.
T Consensus        67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~  117 (153)
T 2zet_C           67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA  117 (153)
T ss_dssp             GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred             CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence            5789999998764   3322  3799999999973 222 345678888664

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=81.15  E-value=0.38  Score=29.94  Aligned_cols=49  Identities=16%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CCCCCccccccccccccCcEEc---cCCChhHHHHHHHHhh--cCCCcccccccc
Q psy18180         29 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRKR   78 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~   78 (143)
                      +...+...| ||......-..+   .|...|+..|+..-..  ...+.||.|+..
T Consensus        23 ~~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~   76 (98)
T 2lv9_A           23 SYGTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR   76 (98)
T ss_dssp             CCCCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred             CCCCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence            334556778 898765543343   5888888888754332  235789999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-08
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	4e-05
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.004

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          LC +C          PC H +C  CL    ++    CP CR  + 
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 5e-08
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
          C  CQ     P  LPC H +C  CL+     S + CP+C+    +
Sbjct: 9  CQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
           S+ C +C+ IL  P++  C H  C  C+ R        CP CR    
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIW-LRRNKDFSLLI 93
          C +C  ++ +P+   C+H  C  C+ ++ +       CP+C+  ++   L+ +  FS L+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLV 83

Query: 94 DE 95
          +E
Sbjct: 84 EE 85

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 37 CLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWL---RRNKDFS 90
          C +C        + LPC H  C  C+ R    +  +CP+C+  +   +     + +F 
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESVVHTIESDSEFG 64

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.8 bits (87), Expect = 4e-05
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 32  PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSL 91
           P+   C +   ++  P+ +          +Q+  D  + +CP  ++ L           L
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-------HAGL 58

Query: 92  LIDENLWNQIQKY 104
             +  L + I  +
Sbjct: 59  TPNYVLKSLIALW 71

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (71), Expect = 0.004
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 33 DSVLCLVCQGIL-----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
          D   C  C+        +K +   C H +C  C+  +      +CP C   L 
Sbjct: 2  DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.78
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.77
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.71
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.7
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.64
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.62
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.54
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.53
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.51
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.51
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.46
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.43
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.21
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.13
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.66
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	95.16
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	94.53
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	90.36
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	90.02
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	87.73
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.85
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	83.55
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	83.19
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.18

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=3.3e-20  Score=113.14  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhh
Q psy18180         28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK  106 (143)
Q Consensus        28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  106 (143)
                      ++...++|.|+||+++|.+||+++|||+||+.||.+|+..+...||.|+..+.       ...+..|..|+++|+.|..
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~-------~~~l~pN~~L~~~I~~~~~   73 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-------HAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-------SCCCEECTTTHHHHHHHHH
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCC-------cccccchHHHHHHHHHHHH
Confidence            34456899999999999999999999999999999999876667999999887       3456677888888888754

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6e-20  Score=112.48  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180         32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK  107 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  107 (143)
                      .++|.||||+++|.+||+++|||+||+.||.+|+..++..||.|+..+..       ..+..|..|.++|+.+..+
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~-------~~l~pN~~L~~~I~~~l~~   73 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-------EQLIPNLAMKEVIDAFISE   73 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-------GGCEECHHHHHHHHHHHTT
T ss_pred             CccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccc-------cccccHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998766679999998873       3566788999999988653

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.4e-18  Score=107.40  Aligned_cols=48  Identities=21%  Similarity=0.771  Sum_probs=43.2

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   81 (143)
                      .+.|+||+++|.+|++++|||+||..||.+|+...  ...||.||..+..
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            79999999999999999999999999999999743  3579999999873

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.6e-18  Score=105.50  Aligned_cols=49  Identities=31%  Similarity=0.697  Sum_probs=44.6

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +.+.|+||.+.+.+|++++|||+||..||.+|++.++..||.||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            4679999999999999999999999999999998666679999998874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=100.77  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             CCCccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180         31 TPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE  108 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  108 (143)
                      ..++|.||||+++|.+||+++|| |+||+.||.+|+..+. .||.|+..+.       ...+..|..|.+.|+.|....
T Consensus        19 ~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~-~~P~~~~~l~-------~~~L~pN~~Lr~~I~~~~~~~   89 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLT-------MDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCC-------TTTSEECHHHHHHHHHHHHHS
T ss_pred             CcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcC-Cccccccccc-------chhhcchHHHHHHHHHHHHHH
Confidence            34589999999999999999876 5899999999998755 5999999987       457778999999999887643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-16  Score=100.85  Aligned_cols=63  Identities=29%  Similarity=0.542  Sum_probs=52.6

Q ss_pred             CccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180         33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY  105 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  105 (143)
                      +.+.|+||.++|.+|+++ +|||+||..||.+|+..   .||.||..+.       ..++..|..+..+++.+.
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~-------~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAW-------IQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCS-------CSSCCCCHHHHHHHHHHH
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCc-------hhhCcccHHHHHHHHHHH
Confidence            378999999999999986 89999999999999853   4999999876       346677888878777654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-16  Score=96.99  Aligned_cols=48  Identities=27%  Similarity=0.612  Sum_probs=43.4

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ...|+||++.+.+|++++|||.||..||.+|+..+...||+||..+..
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            357999999999999999999999999999998665679999999874

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=5.4e-16  Score=88.33  Aligned_cols=46  Identities=17%  Similarity=0.326  Sum_probs=41.4

Q ss_pred             cccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         35 VLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        35 ~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +.|+||++.+.+|+.+ .|||+||..||.+|+..++ .||.||+.+..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~-~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc-CCCccCCcCCH
Confidence            5799999999999988 5999999999999999755 59999998874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=89.51  Aligned_cols=48  Identities=25%  Similarity=0.600  Sum_probs=39.7

Q ss_pred             Ccccccccccccc-Cc----EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         33 DSVLCLVCQGILI-KP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        33 ~~~~C~IC~~~~~-~p----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ++..||||++.+. .+    ++++|||.||..||.+|+..++..||.||+.+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            5789999998653 22    456899999999999999766667999999886

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.9e-16  Score=88.36  Aligned_cols=45  Identities=31%  Similarity=0.782  Sum_probs=40.0

Q ss_pred             CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      +.+.|+||++.+.+|++++|||+||..|+.+|    ...||.||+.+..
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccC
Confidence            46799999999999999999999999998754    4569999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-15  Score=83.88  Aligned_cols=46  Identities=33%  Similarity=0.638  Sum_probs=38.8

Q ss_pred             cccccccccccC----cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         35 VLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        35 ~~C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      +.|+||++.|..    ++.++|||.||..|+.+|+..++..||+||+.+.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            479999998863    3445899999999999999876667999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.46  E-value=8.3e-15  Score=86.48  Aligned_cols=47  Identities=26%  Similarity=0.651  Sum_probs=40.2

Q ss_pred             ccccccccccccCcEE-ccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      .-.|+||++.+.+++. ++|||+||..|+.+|+..+. .||.||+.+..
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred             CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC-cCCCCCcchHh
Confidence            3469999999988765 69999999999999998754 69999998763

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.43  E-value=1.8e-14  Score=81.55  Aligned_cols=49  Identities=31%  Similarity=0.626  Sum_probs=40.1

Q ss_pred             CCCccccccccccccC---cEEc-cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         31 TPDSVLCLVCQGILIK---PIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~---pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      .+++..|+||++.|.+   .+.+ +|||.||..|+.+|+..++ .||+||+.+.
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC-cCCCCCCEeE
Confidence            3567889999999974   3445 6999999999999998754 5999998763

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.2e-12  Score=82.27  Aligned_cols=48  Identities=27%  Similarity=0.563  Sum_probs=38.3

Q ss_pred             ccccccccccccCc------------------EEccCCChhHHHHHHHHhhcC----CCcccccccccch
Q psy18180         34 SVLCLVCQGILIKP------------------IKLPCNHHVCLECLQRICDNS----NLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~p------------------v~l~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~   81 (143)
                      +..|+||++.|..+                  ..++|||.||..||..|+...    ...||+||+.+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            45799999987542                  346899999999999999743    3579999988753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.7e-12  Score=76.54  Aligned_cols=46  Identities=20%  Similarity=0.515  Sum_probs=36.6

Q ss_pred             ccccccccccccC------------------cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         34 SVLCLVCQGILIK------------------PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        34 ~~~C~IC~~~~~~------------------pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      +-.|+||++.+.+                  ++.++|||.||..||.+|+..++ +||+||+.+.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC-cCCCCCCccc
Confidence            3358888876653                  24468999999999999998765 5999999876

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.13  E-value=1.2e-11  Score=70.77  Aligned_cols=49  Identities=22%  Similarity=0.451  Sum_probs=40.8

Q ss_pred             CCccccccccccccCcEEccC-----CChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILIKPIKLPC-----NHHVCLECLQRICD-NSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~~pv~l~C-----gH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~   80 (143)
                      ++...|+||++.+.++...+|     +|.||..||.+|+. +++.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            457799999999888776655     59999999999997 45567999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.7e-09  Score=64.02  Aligned_cols=44  Identities=25%  Similarity=0.529  Sum_probs=33.6

Q ss_pred             cccccccccccc--C-cEEccCCChhHHHHHHHHhhc-------CCCccccccc
Q psy18180         34 SVLCLVCQGILI--K-PIKLPCNHHVCLECLQRICDN-------SNLSCPMCRK   77 (143)
Q Consensus        34 ~~~C~IC~~~~~--~-pv~l~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~   77 (143)
                      ...|+||++.+.  + +..++|||.||..|+..|+..       ..+.||.|.-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            568999999875  3 344589999999999999862       1346998643

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0045  Score=34.92  Aligned_cols=33  Identities=21%  Similarity=0.632  Sum_probs=28.0

Q ss_pred             ccccccccccccCcEEccC----CChhHHHHHHHHhh
Q psy18180         34 SVLCLVCQGILIKPIKLPC----NHHVCLECLQRICD   66 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~C----gH~fC~~Ci~~~~~   66 (143)
                      .+.|.+|.+.+.+-..+.|    +|.||..|-...++
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence            4899999999998766544    69999999998887

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.53  E-value=0.04  Score=32.06  Aligned_cols=49  Identities=20%  Similarity=0.558  Sum_probs=37.9

Q ss_pred             CCcccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180         32 PDSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS   80 (143)
Q Consensus        32 ~~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   80 (143)
                      ...-.|.||.+..-     ++.+.  .|+--.|+.|.+--.+.++..||.|...+.
T Consensus        14 ~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             cccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            34669999998664     33222  588889999998777777888999998876

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.048  Score=28.37  Aligned_cols=43  Identities=28%  Similarity=0.586  Sum_probs=28.9

Q ss_pred             ccccccccccCc-EEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180         36 LCLVCQGILIKP-IKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR   78 (143)
Q Consensus        36 ~C~IC~~~~~~p-v~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~   78 (143)
                      .|.||...-..- .++  .|...|+..|+..-+.   .+...||.|+..
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            577887544322 222  6999999999987654   345679999753

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.11  Score=29.99  Aligned_cols=46  Identities=24%  Similarity=0.575  Sum_probs=33.5

Q ss_pred             CCCccccccccccccCcEEcc---CCChhHHHHHHHHh-hc--------------CCCccccccc
Q psy18180         31 TPDSVLCLVCQGILIKPIKLP---CNHHVCLECLQRIC-DN--------------SNLSCPMCRK   77 (143)
Q Consensus        31 ~~~~~~C~IC~~~~~~pv~l~---CgH~fC~~Ci~~~~-~~--------------~~~~CP~Cr~   77 (143)
                      ...|-.|.|| +.+..-..+|   |+..|+..|+++.- .+              .+.+|+.|..
T Consensus        12 v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~n   75 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCcCcccccc-CcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcc
Confidence            4457899999 6666555665   88899999999872 11              2467999954

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.26  Score=26.47  Aligned_cols=41  Identities=32%  Similarity=0.705  Sum_probs=28.6

Q ss_pred             ccccccccccccCcEEc---cCCChhHHHHHHHHhhcCCCccccc
Q psy18180         34 SVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMC   75 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~~CP~C   75 (143)
                      ...|--|+..+.+....   .|++.||.+|=. ++...--.||-|
T Consensus        15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~-fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCCceEECcCCCCccccccch-hhhhhhcCCCCC
Confidence            45788888888766543   699999999944 333333459987

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.85  E-value=0.09  Score=29.53  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=24.7

Q ss_pred             CCCCCccccccccccccCc---EE-ccCCChhHHHHHHHH
Q psy18180         29 TLTPDSVLCLVCQGILIKP---IK-LPCNHHVCLECLQRI   64 (143)
Q Consensus        29 ~~~~~~~~C~IC~~~~~~p---v~-l~CgH~fC~~Ci~~~   64 (143)
                      +...++-.|.+|...|.--   .- -.||+.||..|....
T Consensus         8 p~W~~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~   47 (72)
T d1dvpa2           8 PNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ   47 (72)
T ss_dssp             CCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred             CCCCcCCccccCCCcccCccccccccccCCeeChhhhCCc
Confidence            3344556799999877632   22 279999999997543

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=83.55  E-value=0.0099  Score=33.43  Aligned_cols=42  Identities=29%  Similarity=0.581  Sum_probs=27.7

Q ss_pred             ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180         34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI   81 (143)
Q Consensus        34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   81 (143)
                      ++.||.|...+..-    =||.+|..|-..+...  ..||.|.+++..
T Consensus         2 ~~~CP~C~~eL~~~----~~~~~C~~C~~~~~~~--a~CPdC~~~Le~   43 (71)
T d2jnea1           2 ELHCPQCQHVLDQD----NGHARCRSCGEFIEMK--ALCPDCHQPLQV   43 (71)
T ss_dssp             CCBCSSSCSBEEEE----TTEEEETTTCCEEEEE--EECTTTCSBCEE
T ss_pred             CCcCCCccCccccc----CCCEehhhhhhhheeE--EeCCccccHHHH
Confidence            46899999876531    1567777775544332  359999888763

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.19  E-value=0.17  Score=31.27  Aligned_cols=47  Identities=19%  Similarity=0.482  Sum_probs=29.3

Q ss_pred             Ccccccccccccc---CcEE--ccCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180         33 DSVLCLVCQGILI---KPIK--LPCNHHVCLECLQRICD---NSNLSCPMCRKRL   79 (143)
Q Consensus        33 ~~~~C~IC~~~~~---~pv~--l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~   79 (143)
                      ..-.|.+|...|.   ....  ..||+.||..|-.....   .....|..|....
T Consensus        47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k~r  101 (124)
T d1zbdb_          47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQR  101 (124)
T ss_dssp             SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHH
T ss_pred             CCCcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCCCCCCEECccCcchH
Confidence            3457999987655   2222  37999999999543221   1124588886543

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.23  Score=22.57  Aligned_cols=12  Identities=25%  Similarity=0.373  Sum_probs=6.4

Q ss_pred             cccccccccccc
Q psy18180         34 SVLCLVCQGILI   45 (143)
Q Consensus        34 ~~~C~IC~~~~~   45 (143)
                      .+.||||..-|.
T Consensus         3 p~~cpic~qrfk   14 (32)
T d2epqa1           3 PYSCPVCGLRFK   14 (32)
T ss_dssp             SSEETTTTEECS
T ss_pred             CcccchHHHHhh
Confidence            355556555544